add _extensions

_extensions/drwater/autocorrect/_extension.yaml

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+title: TO DO
+authors:
+  - name: Ming Su
+    email: mingsu@rcees.ac.cn
+    orcid: 0000-0001-9821-1268
+    url: https://drwater.net/team/ming-su/
+  - name: Lorenz A. Kapsner
+    orcid: 0000-0003-1866-860X
+  - name: Albert Krewinkel
+    orcid: 0000-0002-9455-0796
+  - name: Robert Winkler
+version: 0.3.2
+quarto-required: ">=1.3.0"
+contributes:
+  filters:
+    - autocorrect.py

_extensions/drwater/autocorrect/autocorrect.py

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+# Improve copywriting, correct spaces, words, and punctuations between CJK and English with AutoCorrect
+
+# Copyright: © 2024–Present Tom Ben
+# License: MIT License
+
+import autocorrect_py as autocorrect
+import json
+import panflute as pf
+from panflute import elements as pf_elements
+
+# Allow typst and comment raw blocks until upstream panflute adds support.
+ADDITIONAL_RAW_FORMATS = {'typst', 'comment'}
+if hasattr(pf_elements, 'RAW_FORMATS'):
+    pf_elements.RAW_FORMATS = set(pf_elements.RAW_FORMATS)
+    pf_elements.RAW_FORMATS.update(ADDITIONAL_RAW_FORMATS)
+
+
+def load_config():
+    # yaml-language-server: $schema=https://huacnlee.github.io/autocorrect/schema.json
+    config = {
+        # 0 - off, 1 - error, 2 - warning
+        "rules": {
+            # Add space between some punctuations
+            "space-punctuation": 0,
+            # Add space between brackets (), [] when near the CJK
+            "space-bracket": 0,
+            # Add space between ``, when near the CJK
+            "space-backticks": 0,
+            # Add space between dash `-`
+            "space-dash": 0,
+            # Convert to fullwidth
+            "fullwidth": 0,
+            # To remove space arouned the fullwidth quotes “”, ‘’
+            "no-space-fullwidth-quote": 0,
+            # Fullwidth alphanumeric characters to halfwidth
+            "halfwidth-word": 1,
+            # Fullwidth punctuations to halfwidth in English
+            "halfwidth-punctuation": 1,
+            # Spellcheck
+            "spellcheck": 0
+        }
+    }
+    config_str = json.dumps(config)
+    autocorrect.load_config(config_str)
+
+
+def correct_text(elem, doc):
+    if isinstance(elem, pf.Str):
+        # Apply autocorrect formatting to each text node
+        corrected_text = autocorrect.format(elem.text)
+        return pf.Str(corrected_text)
+
+
+def main(doc=None):
+    # Load autocorrect configuration
+    load_config()
+    return pf.run_filter(correct_text, doc=doc)
+
+
+if __name__ == "__main__":
+    main()

_extensions/drwater/autocorrect/template.qmd

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+---
+title: "MANUSCRIPT TITLE"
+subtitle: "Supplementary Information"
+submitjournal: "JOURNAL"
+submitid: 
+lang: en
+date: ""
+# bibliography: [BB/Ref.bib, BB/localRef.bib]
+affilstyle: alphabeta # number
+author:
+  - name: Xxxxx Yyyy
+    affiliations:
+      - ref: kleac
+    # email: 13586740928@163.com
+    attributes:
+      corresponding: false
+      equal-contributor: true
+    role:
+      - data-curation: lead
+      - methodology: lead
+      - formalanalysis: lead
+      - writingoriginal: equal
+      - writingediting: eqaul
+      - visualisation: supporting
+  - name: Ming Su
+    email: mingsu@rcees.ac.cn
+    url: https://drwater.net/team/ming-su/
+    role:
+      - conceptualization: lead
+      - methodology: supporting
+      - formalanalysis: lead
+      - writingoriginal: equal
+      - writingediting: equal
+      - visualisation: lead
+      - projectadmin: lead
+      - supervision
+    affiliations:
+      - ref: kleac
+      - ref: ucas
+    attributes:
+      corresponding: true
+      equal-contributor: true
+  - name: Min Yang
+    email: yangmin@rcees.ac.cn
+    affiliations:
+      - ref: kleac
+      - ref: ucas
+    attributes:
+      corresponding: true
+affiliations:
+  - id: kleac
+    name: State Key Laboratory of Environmental Aquatic Chemistry, Research Center for Eco-Environmental Sciences, Chinese Academy of Sciences
+    # address: No. 18 Shuangqing Road
+    city: Beijing
+    postal-code: 100085
+    country: China
+    url: https://www.skleac.ac.cn
+  - id: ucas
+    name: University of Chinese Academy of Sciences
+    # address: No. 19A Yuquan Road
+    city: Beijing
+    postal-code: 100049
+    country: China
+    url: https://www.ucas.ac.cn
+prefer-html: true
+format:
+  # elsevier-html:
+  #   toc: true
+  #   css: _extensions/drwater/dwms/inst/css/style.css
+  # docx:
+  #   reference-doc: _extensions/drwater/dwms/inst/word/MS.docx
+  pdf:
+    fontsize: 12pt
+    keep-md: false
+    keep-tex: false
+filters:
+  # - latex-environment
+  # - authoraffil
+  - autocorrect
+---
+
+
+```{r}
+#| include: false
+#| cache: false
+
+lang <- "en"
+isRendering <- isTRUE(getOption("knitr.in.progress"))
+require(tidyverse)
+require(drwateR)
+require(patchwork)
+rmdify::rmd_init()
+dwfun::init()
+```
+
+
+{{< pagebreak >}}
+
+# Abstract {-}
+
+
+{{< pagebreak >}}
+
+
+{{< pagebreak >}}
+
+<!-- {{< include _est.qmd >}} -->
+
+# References {-}
+
+::: {#refs}
+:::
+
+{{< pagebreak >}}
+
+<!-- {{< include _nature.qmd >}} -->