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<body class="quarto-dark">
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<div class="slides">
<section id="title-slide" class="quarto-title-block center">
<h1 class="title">、R语言实践前篇</h1>
<p class="subtitle">《区域水环境污染数据分析实践》<br>Data analysis practice of regional water environment pollution</p>
<div class="quarto-title-authors">
<div class="quarto-title-author">
<div class="quarto-title-author-name">
苏命、王为东<br>中国科学院大学资源与环境学院<br>中国科学院生态环境研究中心
</div>
</div>
</div>
<p class="date">2025-03-19</p>
</section>
<section id="r语言实践部分课程简介" class="slide level2">
<h2>R语言实践部分课程简介</h2>
<p><strong>接下来的课程由我来带着大家一起学习、实践基于R语言的数据分析。</strong></p>
<h3 id="自我介绍">自我介绍</h3>
<ul>
<li>苏命:来自中国科学院生态环境研究中心</li>
<li>主要从事<strong>水源水质水生态</strong>方面的研究</li>
</ul>
<h3 id="课件">课件</h3>
<ul>
<li>采用<code>R语言</code>+<code>quarto</code>完成</li>
<li>网页公开:<a href="https://drc.drwater.net/course/public/RWEP/PUB/index.html">https://drc.drwater.net/course/public/RWEP/PUB/index.html</a></li>
<li>课件代码:<a href="https://git.drwater.net/course/RWEP.git">https://git.drwater.net/course/RWEP.git</a></li>
</ul>
</section>
<section id="如何学习接下来的内容" class="slide level2">
<h2>如何学习接下来的内容?</h2>
<ul>
<li>上课形式:
<ul>
<li><strong>实践操作为主</strong>目的是让每一位同学都能独立开展基于R的数据分析</li>
<li><strong>2-3人一组</strong>,自由分组,相互帮助</li>
</ul></li>
<li>准备工作:
<ul>
<li>个人笔记本电脑Microsoft Windows、GNU/Linux、MacOS系统</li>
<li>安装好<strong>Microsoft Excel</strong></li>
<li>能联网</li>
<li>如果电池不够用,建议带上插座</li>
</ul></li>
<li>上课规则
<ul>
<li>可随时打断,<strong>不懂就问</strong></li>
<li><strong>无特殊情况不迟到</strong>,否则操作过程容易跟不上</li>
</ul></li>
</ul>
</section>
<section id="rstudio-server使用" class="slide level2">
<h2>Rstudio Server使用</h2>
<ul>
<li>服务网址:<a href="https://rs1.drwater.net/">https://rs1.drwater.net/</a></li>
<li>每位同学使用1个账号随机生成</li>
<li>密码:****</li>
<li>后面的实践课程可在该服务器上完成</li>
</ul>
</section>
<section id="请记住自己的账号" class="slide level2">
<h2>请记住自己的账号!</h2>
<div>
</div>
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<tbody>
<tr class="odd">
<td style="text-align: left;">ruser01</td>
<td style="text-align: left;">XX</td>
</tr>
<tr class="even">
<td style="text-align: left;">ruser02</td>
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<section id="请记住自己的账号-1" class="slide level2">
<h2>请记住自己的账号!</h2>
<div>
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<th style="text-align: left;">uid</th>
<th style="text-align: left;">姓名</th>
</tr>
</thead>
<tbody>
<tr class="odd">
<td style="text-align: left;">ruser21</td>
<td style="text-align: left;">XX</td>
</tr>
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<td style="text-align: left;">XX</td>
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</section>
<section id="课后作业" class="slide level2">
<h2>课后作业</h2>
<p>提交形式:<code>第*次作业_姓名.qmd</code>文件</p>
<p>模板:</p>
<pre><code>---
title: "课后作业*"
author: 姓名
---
# 第1题
说明
::: {.cell}
```{.r .cell-code}
# Here is the code
```
:::
# 第2题
说明
::: {.cell}
```{.r .cell-code}
# Here is the code
```
:::
</code></pre>
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<h2>欢迎讨论!</h2>
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<h1 class="title">一、R语言介绍</h1>
<p class="subtitle">《区域水环境污染数据分析实践》<br>Data analysis practice of regional water environment pollution</p>
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苏命、王为东<br>中国科学院大学资源与环境学院<br>中国科学院生态环境研究中心
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<p class="date">2025-03-19</p>
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<section id="r的历史" class="slide level2">
<h2>R的历史</h2>
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<div class="column" style="width:85%;">
<ul>
<li>1976年
<ul>
<li>前身是S语言由贝尔实验室John Chambers及其同事开发</li>
</ul></li>
<li>1993年
<ul>
<li>R语言由Ross Ihaka和Robert Gentleman在奥克兰大学开发</li>
<li>R的诞生是为了提供一个强大的统计计算和图形显示的平台</li>
</ul></li>
</ul>
</div><div class="column" style="width:15%;">
<p><img data-src="https://cran.r-project.org/Rlogo.svg"></p>
</div></div>
<ul>
<li>1995年R发布第一个公开版本</li>
<li>2000年代 R语言逐渐成为统计学和数据科学领域重要工具</li>
<li>2010年Hadley Wickham发布了ggplot2包数据可视化方面更强</li>
<li>2016年创建CRANComprehensive R Archive NetworkR包中央库</li>
<li>至今
<ul>
<li><strong>R语言已成为数据科学和统计学领域最受欢迎的工具之一被广泛用于数据分析、机器学习、数据可视化等领域</strong></li>
</ul></li>
</ul>
</section>
<section id="r的特点" class="slide level2">
<h2>R的特点</h2>
<h3 id="一般特点">一般特点</h3>
<ul>
<li>免费、开源、支持各个主要计算机系统。</li>
<li>完整的程序设计语言,基于函数和对象。</li>
<li>支持完善的数据类型,如向量、矩阵、数据框等。</li>
</ul>
<h3 id="技术特点">技术特点</h3>
<ul>
<li>所有存在都是对象。</li>
<li>所有动作都是函数调用。</li>
<li>支持函数编程和对象类。</li>
<li>是动态类型语言,运行速度相对较慢。</li>
</ul>
</section>
<section id="r的参考资料" class="slide level2">
<h2>R的参考资料</h2>
<h3 id="推荐参考书">推荐参考书</h3>
<ul>
<li>Hadley Wickham and Garrett Grolemund(2022). <a href="https://r4ds.hadley.nz/">R for Data Science</a></li>
<li>Hadley Wickham(2019). <a href="https://adv-r.hadley.nz/">Advanced R</a></li>
<li>Hadley Wickham(2016). <a href="https://ggplot2-book.org/">ggplot2 Elegant Graphics for Data Analysis</a></li>
<li>John M. Chambers(2008). <a href="https://www.springer.com/gp/book/9780387759357">Software for Data Analysis-Programming with R</a></li>
<li>Venables, W. N. &amp; Ripley, B. D.(2002). <a href="https://www.springer.com/gp/book/9780387954578">Modern Applied Statistics with S (MASS)</a></li>
</ul>
</section>
<section id="r的参考资料-1" class="slide level2">
<h2>R的参考资料</h2>
<h3 id="中文参考书">中文参考书</h3>
<ul>
<li>《R语言编程艺术》</li>
<li>《R语言实战》</li>
<li>《R语言教程与实践》</li>
<li>《R语言数据可视化实战》</li>
<li>《R语言从入门到精通》</li>
</ul>
</section>
<section id="r的下载与安装" class="slide level2">
<h2>R的下载与安装</h2>
<h3 id="r的下载与安装-1">R的下载与安装</h3>
<ul>
<li>R的官方网站<a href="https://www.r-project.org/">https://www.r-project.org/</a></li>
<li>CRAN镜像网站<a href="http://mirror.bjtu.edu.cn/cran/">http://mirror.bjtu.edu.cn/cran/</a></li>
<li>下载官方的R软件后按提示安装</li>
</ul>
<iframe data-external="1" src="https://player.vimeo.com/video/203516510" width="600" height="400" frameborder="0" title="" allow="autoplay; fullscreen; picture-in-picture" allowfullscreen=""></iframe>
</section>
<section id="rstudio" class="slide level2">
<h2>RStudio</h2>
<h3 id="什么是rstudio">什么是RStudio</h3>
<ul>
<li>RStudio官方网站: <a href="https://posit.co/products/open-source/rstudio/">https://posit.co/products/open-source/rstudio/</a></li>
<li>RStudio是一个集成开发环境IDE专门用于R语言编程和数据分析。</li>
<li>它提供了一个直观的界面使得编写、调试和运行R代码变得更加容易。</li>
</ul>
</section>
<section id="rstudio-1" class="slide level2">
<h2>RStudio</h2>
<h3 id="rstudio的功能">RStudio的功能</h3>
<ol type="1">
<li><strong>代码编辑器</strong>:提供了语法高亮、自动补全和代码折叠等功能。</li>
<li><strong>控制台</strong>用于直接执行R代码并查看结果。</li>
<li><strong>环境和历史记录</strong>:可以查看当前加载的数据、函数和变量,以及之前执行过的命令。</li>
<li><strong>图形和可视化</strong>RStudio内置了绘图设备可以方便地创建各种统计图表。</li>
<li><strong>文件管理器</strong>可直接在RStudio中管理文件和项目。</li>
<li><strong>包管理器</strong>方便地安装、更新和管理R包。</li>
<li><strong>Markdown编辑器</strong>支持Markdown格式可以创建美观的文档和报告。</li>
</ol>
</section>
<section id="如何获取rstudio" class="slide level2">
<h2>如何获取RStudio</h2>
<ul>
<li>RStudio可以从官方网站免费下载并安装<a href="https://posit.co/download/rstudio-desktop/">RStudio官网</a></li>
<li>RStudio是一个强大的R编程环境为R用户提供了丰富的功能和工具。</li>
<li>它简化了R语言的使用提高了数据分析和可视化的效率。</li>
</ul>
<iframe data-external="1" src="https://player.vimeo.com/video/203516968" width="600" height="400" frameborder="0" title="" allow="autoplay; fullscreen; picture-in-picture" allowfullscreen=""></iframe>
</section>
<section id="扩展包r-package" class="slide level2">
<h2>扩展包R package</h2>
<ul>
<li>R有一万多个扩展软件包提供了各种各样的功能</li>
<li>已安装的基本R包如base, stats, graphics等启动R时默认载入</li>
<li>其它扩展包需要用<code>library(.)</code>函数载入运行;或者采用<code>dplyr::filter(.)</code>方式</li>
</ul>
<div class="panel-tabset">
<ul id="tabset-1" class="panel-tabset-tabby"><li><a data-tabby-default="" href="#tabset-1-1">Code</a></li><li><a href="#tabset-1-2">Output</a></li></ul>
<div class="tab-content">
<div id="tabset-1-1">
<div class="cell">
<div class="sourceCode cell-code" id="cb1"><pre class="sourceCode numberSource r number-lines code-with-copy"><code class="sourceCode r"><span id="cb1-1"><a></a><span class="co"># load a R package</span></span>
<span id="cb1-2"><a></a><span class="fu">library</span>(ggplot2)</span>
<span id="cb1-3"><a></a></span>
<span id="cb1-4"><a></a><span class="co"># plot it based on the functions from `ggplot2` package</span></span>
<span id="cb1-5"><a></a>mtcars <span class="sc">|&gt;</span></span>
<span id="cb1-6"><a></a> dplyr<span class="sc">::</span><span class="fu">filter</span>(cyl <span class="sc">!=</span> <span class="dv">8</span>) <span class="sc">|&gt;</span></span>
<span id="cb1-7"><a></a> <span class="fu">ggplot</span>(<span class="fu">aes</span>(hp, mpg, <span class="at">color =</span> am)) <span class="sc">+</span></span>
<span id="cb1-8"><a></a> <span class="fu">geom_point</span>() <span class="sc">+</span></span>
<span id="cb1-9"><a></a> <span class="fu">geom_smooth</span>(<span class="at">formula =</span> y <span class="sc">~</span> x, <span class="at">method =</span> <span class="st">"loess"</span>)</span></code><button title="复制到剪贴板" class="code-copy-button"><i class="bi"></i></button></pre></div>
</div>
</div>
<div id="tabset-1-2">
<div class="cell">
<div class="cell-output-display">
<div>
<figure>
<p><img data-src="index_files/figure-revealjs/unnamed-chunk-3-1.png" style="width:80.0%"></p>
</figure>
</div>
</div>
</div>
</div>
</div>
</div>
</section>
<section id="安装r包" class="slide level2">
<h2>安装R包</h2>
<ul>
<li>以安装sos包为例。</li>
<li>在RStudio中调用“Tools”菜单的“Install Packages”输入或选择sos即可安装。</li>
<li>R图形界面安装</li>
<li>如果不用RStudio 在R图形界面选菜单“程序包-安装程序包”进行安装。</li>
<li>在CRAN镜像选择窗口中选择中国的镜像如“China (Beijing 2)”,然后选择要安装的扩展软件包名称即可完成下载和安装。</li>
<li>程序安装</li>
</ul>
<div class="sourceCode" id="cb2"><pre class="sourceCode numberSource r number-lines code-with-copy"><code class="sourceCode r"><span id="cb2-1"><a></a><span class="co"># 指定镜像网站并安装扩展包</span></span>
<span id="cb2-2"><a></a><span class="fu">options</span>(<span class="at">repos=</span><span class="fu">c</span>(<span class="at">CRAN=</span><span class="st">"https://mirror.tuna.tsinghua.edu.cn/CRAN/"</span>))</span>
<span id="cb2-3"><a></a><span class="fu">install.packages</span>(<span class="st">"sos"</span>)</span>
<span id="cb2-4"><a></a></span>
<span id="cb2-5"><a></a><span class="co"># 当R包不是CRAN标准包代码放在[github](https://github.com)</span></span>
<span id="cb2-6"><a></a><span class="cf">if</span> (<span class="sc">!</span><span class="fu">require</span>(devtools)) <span class="fu">install.packages</span>(<span class="st">'devtools'</span>)</span>
<span id="cb2-7"><a></a>devtools<span class="sc">::</span><span class="fu">install_github</span>(<span class="st">"kjhealy/socviz"</span>)</span></code><button title="复制到剪贴板" class="code-copy-button"><i class="bi"></i></button></pre></div>
</section>
<section id="安装r包-1" class="slide level2">
<h2>安装R包</h2>
<iframe data-external="1" src="https://player.vimeo.com/video/203516241" width="600" height="400" frameborder="0" title="" allow="autoplay; fullscreen; picture-in-picture" allowfullscreen=""></iframe>
</section>
<section id="结语" class="slide level2">
<h2>结语</h2>
<ul>
<li>R语言是一种强大的统计计算和数据分析工具适用于各种领域。</li>
<li>通过学习R语言可以进行数据处理、统计分析和数据可视化。</li>
</ul>
</section>
<section id="欢迎讨论" class="slide level2 center">
<h2>欢迎讨论!</h2>
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