% Options for packages loaded elsewhere
% Options for packages loaded elsewhere
\PassOptionsToPackage{unicode}{hyperref}
\PassOptionsToPackage{hyphens}{url}
\PassOptionsToPackage{dvipsnames,svgnames,x11names}{xcolor}
\PassOptionsToPackage{space}{xeCJK}
%
\documentclass[
  english,
  12pt,
  letterpaper,
]{article}
\usepackage{xcolor}
\usepackage[margin=1in]{geometry}
\usepackage{amsmath,amssymb}
\setcounter{secnumdepth}{-\maxdimen} % remove section numbering
\usepackage{iftex}
\ifPDFTeX
  \usepackage[T1]{fontenc}
  \usepackage[utf8]{inputenc}
  \usepackage{textcomp} % provide euro and other symbols
\else % if luatex or xetex
  \usepackage{unicode-math} % this also loads fontspec
  \defaultfontfeatures{Scale=MatchLowercase}
  \defaultfontfeatures[\rmfamily]{Ligatures=TeX,Scale=1}
\fi
\usepackage{lmodern}
\ifPDFTeX\else
  % xetex/luatex font selection
  \setmainfont[]{Source Sans 3}
  \setsansfont[Color=39729E]{Gill Sans}
  \setmonofont[]{JetBrains Mono}
  \setmathfont[]{Cambria Math}
  \ifXeTeX
    \usepackage{xeCJK}
    \setCJKmainfont[]{SimHei}
  \fi
  \ifLuaTeX
    \usepackage[]{luatexja-fontspec}
    \setmainjfont[]{SimHei}
  \fi
\fi
% Use upquote if available, for straight quotes in verbatim environments
\IfFileExists{upquote.sty}{\usepackage{upquote}}{}
\IfFileExists{microtype.sty}{% use microtype if available
  \usepackage[]{microtype}
  \UseMicrotypeSet[protrusion]{basicmath} % disable protrusion for tt fonts
}{}
\makeatletter
\@ifundefined{KOMAClassName}{% if non-KOMA class
  \IfFileExists{parskip.sty}{%
    \usepackage{parskip}
  }{% else
    \setlength{\parindent}{0pt}
    \setlength{\parskip}{6pt plus 2pt minus 1pt}}
}{% if KOMA class
  \KOMAoptions{parskip=half}}
\makeatother


\usepackage{longtable,booktabs,array}
\usepackage{calc} % for calculating minipage widths
% Correct order of tables after \paragraph or \subparagraph
\usepackage{etoolbox}
\makeatletter
\patchcmd\longtable{\par}{\if@noskipsec\mbox{}\fi\par}{}{}
\makeatother
% Allow footnotes in longtable head/foot
\IfFileExists{footnotehyper.sty}{\usepackage{footnotehyper}}{\usepackage{footnote}}
\makesavenoteenv{longtable}
\usepackage{graphicx}
\makeatletter
\newsavebox\pandoc@box
\newcommand*\pandocbounded[1]{% scales image to fit in text height/width
  \sbox\pandoc@box{#1}%
  \Gscale@div\@tempa{\textheight}{\dimexpr\ht\pandoc@box+\dp\pandoc@box\relax}%
  \Gscale@div\@tempb{\linewidth}{\wd\pandoc@box}%
  \ifdim\@tempb\p@<\@tempa\p@\let\@tempa\@tempb\fi% select the smaller of both
  \ifdim\@tempa\p@<\p@\scalebox{\@tempa}{\usebox\pandoc@box}%
  \else\usebox{\pandoc@box}%
  \fi%
}
% Set default figure placement to htbp
\def\fps@figure{htbp}
\makeatother



\ifLuaTeX
\usepackage[bidi=basic]{babel}
\else
\usepackage[bidi=default]{babel}
\fi
\ifPDFTeX
\else
\babelfont{rm}[]{Source Sans 3}
\fi
% get rid of language-specific shorthands (see #6817):
\let\LanguageShortHands\languageshorthands
\def\languageshorthands#1{}
\ifLuaTeX
  \usepackage[english]{selnolig} % disable illegal ligatures
\fi


\setlength{\emergencystretch}{3em} % prevent overfull lines

\providecommand{\tightlist}{%
  \setlength{\itemsep}{0pt}\setlength{\parskip}{0pt}}



 


% -----------------------
% CUSTOM PREAMBLE STUFF
% -----------------------
\usepackage{enumitem}
\usepackage{fontspec}
\usepackage{float}
\usepackage[normalem]{ulem}
\usepackage{hyperref}
\usepackage{nameref} %needed by zref-xr
\usepackage{zref-xr,zref-hyperref,zref-user}
\usepackage{xr-hyper}
\usepackage[normalem]{ulem}
\usepackage{setspace}
\usepackage{lineno}
\usepackage{caption}
\captionsetup{singlelinecheck=off}
\usepackage[UTF8, scheme=plain]{ctex}
\usepackage{orcidlink}

% \setkomafont{author}{\normalsize}

% for revision
\usepackage{adjustbox}
% \usepackage{xcolor}
\usepackage{mdframed}
\newmdenv[topline=false,
          leftline=true,
          bottomline=false,
          rightline=false,
          linewidth=3pt,
          %backgroundcolor=lightgray,
          linecolor=gray!30,
          backgroundcolor=gray!5,
          skipabove=\topsep,
          skipbelow=\topsep,
          leftmargin=0pt,
          rightmargin=0pt,
          innertopmargin=0pt,
          innerbottommargin=0pt
          ]{refquote}
\newmdenv[topline=false,
          leftline=true,
          bottomline=false,
          rightline=false,
          linewidth=3pt,
          %backgroundcolor=lightgray,
          backgroundcolor=red!3!white,
          linecolor=red!30!white,
          skipabove=\topsep,
          skipbelow=\topsep,
          leftmargin=0pt,
          rightmargin=0pt,
          innertopmargin=10pt,
          innerbottommargin=10pt
          ]{question}
% setup hyperlink for page and line number
\def\msname{MS}
\def\smname{SM}
\setenumerate{labelsep=*, leftmargin=1.0pc}
%\zexternaldocument*{ManuscriptNew\veraa}
\zexternaldocument*{\msname}
\zexternaldocument*{\smname}
\newcommand{\hlabel}[1]{\label{#1}\hypertarget{#1}{
    \linelabel{line:#1}}}
%\externaldocument[si-]{\smname\veraa}[\smname\veraa.pdf]
\makeatletter
\newcommand{\clab}[2][]{
		\protected@write\@auxout{\let\clab\@secondoftwo}{
				\string\newlabel{r:#1}{{#2}{}}}%
		\hlabel{#1}#2\hlabel{#1end}}
\makeatother 
\newcommand{\zhypera}[1]{\href[pdfnewwindow]{\msname.pdf\##1}{\\[1ex]\textbf{Page \zpageref{#1}, Line
\zref{line:#1}--\zref{line:#1end}:}\\}}
\newcommand{\cref}[1]{\begin{refquote}\zhypera{#1}{\zref{r:#1}}\\[-0.5ex]\end{refquote}}
% \newenvironment{ra}[1][\unskip]{\par \noindent \\[-1ex] \textbf{Response/Action:}\par\bf}{\ \\}
\renewenvironment{quote}{\begin{question}}{\end{question}}
% \renewenvironment{verbatim}{\begin{ra}}{\end{ra}}




% -----------------
% Title block stuff
% -----------------

% Title
\makeatletter
\renewcommand{\title}[1]{\gdef\@title{\large\textbf{#1}}} % Adjust \Huge or other font commands
\makeatother


% ------------------
% Section headings
% ------------------
\usepackage{titlesec}
\titleformat*{\section}{\Large\sffamily\bfseries\raggedright}
\titleformat*{\subsection}{\large\sffamily\bfseries\raggedright}
\titleformat*{\subsubsection}{\normalsize\sffamily\bfseries\raggedright}
\titleformat*{\paragraph}{\small\sffamily\bfseries\raggedright}

%\titlespacing{<command>}{<left>}{<before-sep>}{<after-sep>}
% Starred version removes indentation in following paragraph
\titlespacing*{\section}{0em}{2em}{0.1em}
\titlespacing*{\subsection}{0em}{1.25em}{0.1em}
\titlespacing*{\subsubsection}{0em}{0.75em}{0em}

% ------------------
% Headers/Footers
% ------------------
% \usepackage{fancyhdr}
% \pagestyle{fancy}
% \fancyhf{}
% \fancyhead[L,C,R]{}
% \fancyfoot[L,C]{}
% \fancyfoot[R]{\thepage}
% \renewcommand{\headrulewidth}{1pt}
% \fancypagestyle{plain}{%
%     \renewcommand{\headrulewidth}{0pt}%
%     \fancyhf{}%
%     \fancyfoot[R]{\thepage}%
% }
% \renewcommand\footnoterule{\rule{\linewidth}{0.1pt}\vspace{5pt}}

% ------------------
% Captions
% ------------------
\usepackage[labelfont=bf,labelsep=period]{caption}
\captionsetup[figure]{font=footnotesize,justification=raggedright,singlelinecheck=false,format=hang}


% ---------------------------
% END CUSTOM PREAMBLE STUFF
% ---------------------------
\doublespacing
\linenumbers
\let\oldsection\section
\renewcommand{\section}{\clearpage\oldsection}
\let\oldsubsection\subsection
\renewcommand{\subsection}{\clearpage\oldsubsection}
\makeatletter
\@ifpackageloaded{float}{}{\usepackage{float}}
\floatstyle{plain}
\@ifundefined{c@chapter}{\newfloat{sfg}{h}{lost}}{\newfloat{sfg}{h}{lost}[chapter]}
\floatname{sfg}{Supplementary Fig.}
\newcommand*\listofsfgs{\listof{sfg}{List of Supplementary Figures}}
\makeatother
\makeatletter
\@ifpackageloaded{float}{}{\usepackage{float}}
\floatstyle{plain}
\@ifundefined{c@chapter}{\newfloat{stb}{h}{lost}}{\newfloat{stb}{h}{lost}[chapter]}
\floatname{stb}{Supplementary Table}
\newcommand*\listofstbs{\listof{stb}{List of Supplementary Tables}}
\makeatother
\makeatletter
\@ifpackageloaded{float}{}{\usepackage{float}}
\floatstyle{plain}
\@ifundefined{c@chapter}{\newfloat{seq}{h}{lost}}{\newfloat{seq}{h}{lost}[chapter]}
\floatname{seq}{Supplementary Eq.}
\newcommand*\listofseqs{\listof{seq}{List of Supplementary Equations}}
\makeatother
\makeatletter
\@ifpackageloaded{float}{}{\usepackage{float}}
\floatstyle{plain}
\@ifundefined{c@chapter}{\newfloat{rfg}{h}{lost}}{\newfloat{rfg}{h}{lost}[chapter]}
\floatname{rfg}{Fig. R}
\newcommand*\quartorfgref[1]{Fig. \hyperref[#1]{R\ref{#1}}}
\@ifpackageloaded{caption}{}{\usepackage{caption}}
\DeclareCaptionLabelFormat{quartorfgreflabelformat}{#1#2}
\captionsetup[rfg]{labelformat=quartorfgreflabelformat}
\newcommand*\listofrfgs{\listof{rfg}{List of Revision Figures}}
\makeatother
\makeatletter
\@ifpackageloaded{float}{}{\usepackage{float}}
\floatstyle{plain}
\@ifundefined{c@chapter}{\newfloat{rtb}{h}{lost}}{\newfloat{rtb}{h}{lost}[chapter]}
\floatname{rtb}{Table R}
\newcommand*\quartortbref[1]{Table \hyperref[#1]{R\ref{#1}}}
\@ifpackageloaded{caption}{}{\usepackage{caption}}
\DeclareCaptionLabelFormat{quartortbreflabelformat}{#1#2}
\captionsetup[rtb]{labelformat=quartortbreflabelformat}
\newcommand*\listofrtbs{\listof{rtb}{List of Revision Tables}}
\makeatother
\makeatletter
\@ifpackageloaded{float}{}{\usepackage{float}}
\floatstyle{plain}
\@ifundefined{c@chapter}{\newfloat{req}{h}{lost}}{\newfloat{req}{h}{lost}[chapter]}
\floatname{req}{Eq R}
\newcommand*\quartoreqref[1]{Eq \hyperref[#1]{R\ref{#1}}}
\@ifpackageloaded{caption}{}{\usepackage{caption}}
\DeclareCaptionLabelFormat{quartoreqreflabelformat}{#1#2}
\captionsetup[req]{labelformat=quartoreqreflabelformat}
\newcommand*\listofreqs{\listof{req}{List of Revision Equations}}
\makeatother
\makeatletter
\@ifpackageloaded{caption}{}{\usepackage{caption}}
\AtBeginDocument{%
\ifdefined\contentsname
  \renewcommand*\contentsname{Table of contents}
\else
  \newcommand\contentsname{Table of contents}
\fi
\ifdefined\listfigurename
  \renewcommand*\listfigurename{List of Figures}
\else
  \newcommand\listfigurename{List of Figures}
\fi
\ifdefined\listtablename
  \renewcommand*\listtablename{List of Tables}
\else
  \newcommand\listtablename{List of Tables}
\fi
\ifdefined\figurename
  \renewcommand*\figurename{Fig.}
\else
  \newcommand\figurename{Fig.}
\fi
\ifdefined\tablename
  \renewcommand*\tablename{Table}
\else
  \newcommand\tablename{Table}
\fi
}
\@ifpackageloaded{float}{}{\usepackage{float}}
\floatstyle{ruled}
\@ifundefined{c@chapter}{\newfloat{codelisting}{h}{lop}}{\newfloat{codelisting}{h}{lop}[chapter]}
\floatname{codelisting}{Listing}
\newcommand*\listoflistings{\listof{codelisting}{List of Listings}}
\captionsetup{labelsep=colon}
\makeatother
\makeatletter
\makeatother
\makeatletter
\@ifpackageloaded{caption}{}{\usepackage{caption}}
\@ifpackageloaded{subcaption}{}{\usepackage{subcaption}}
\makeatother
\usepackage{bookmark}
\IfFileExists{xurl.sty}{\usepackage{xurl}}{} % add URL line breaks if available
\urlstyle{same}
\hypersetup{
  pdftitle={MANUSCRIPT TITLE},
  pdfauthor={Xxxxx Yyyy; Ming Su; Min Yang},
  pdflang={en},
  colorlinks=true,
  linkcolor={blue},
  filecolor={Maroon},
  citecolor={Blue},
  urlcolor={blue},
  pdfcreator={LaTeX via pandoc}}


\title{MANUSCRIPT TITLE}
\usepackage{etoolbox}
\makeatletter
\providecommand{\subtitle}[1]{% add subtitle to \maketitle
  \apptocmd{\@title}{\par {\large\sffamily\bfseries #1 \par}}{}{}
}
\makeatother
\subtitle{Supplementary Information}
\author{\footnotesize Xxxxx Yyyy \and \footnotesize Ming
Su \and \footnotesize Min Yang}
\date{}
\begin{document}

% for some reason this does not work in header
\renewcommand{\abstractname}{Abstract.}

% add the short title to the fancy header

\maketitle
%\noindent \rule{\linewidth}{.5pt}
%\noindent \rule{\linewidth}{.5pt}


\thispagestyle{empty}

Figures and/or tables are provided below as the supplementary evidences
to the main text.

\newpage{}

\clearpage
{
\hypersetup{linkcolor=black}
\setcounter{tocdepth}{3}
\tableofcontents
}

\newpage{}

\begin{sfg}

\centering{

\begin{verbatim}
#> NULL
\end{verbatim}

}

\caption{\label{sfg-demo}Caption of demo figure}

\end{sfg}%




\end{document}
