适配updated publish2dw

.gitignore

@@ -1,3 +1,5 @@
 /.quarto/
 site_libs/
-*.html.md
+BB/Ref/bib
+_variables.yml
+www/

MS/MS.html.md

@@ -0,0 +1,101 @@
+---
+msname: MS
+smname: SM
+abstract: ABSTRACT
+keywords: 
+  - KEYWORD1
+  - KEYWORD2
+  - KEYWORD3
+# date: last-modified
+bibliography: [../BB/Ref.bib, ../BB/localRef.bib]
+# csl: https://www.zotero.org/styles/elsevier-harvard
+csl: _extensions/inst/tex/elsevier-harvard.csl
+format:
+  elsevier-html:
+    css: _extensions/inst/css/style.css
+    keep-md: true
+    filters:
+      - author-info-blocks
+  epub: default
+  docx:
+    reference-doc: _extensions/inst/word/MS.docx
+    filters:
+      - author-info-blocks
+  elsevier-pdf:
+    keep-tex: true
+    keep-md: true
+    include-in-header: "./_extensions/quarto-journals/elsevier/partials/revision.tex"
+    latex-clean: false
+    header-includes:
+      # - \usepackage{threeparttable}
+      # - \usepackage{fontspec}
+      # - \usepackage{endfloat}
+      - \setmainfont{Calibri}
+      # - \usepackage[UTF8, scheme=plain]{ctex}
+      # - \usepackage{float}
+      - \usepackage[normalem]{ulem}
+      - \usepackage[doublespacing]{setspace}
+      - \usepackage{lineno}
+      - \linenumbers
+    journal:
+      formatting: preprint # preprint | review | doublebind
+      model: 1p
+      cite-style: authoryear
+      # graphical-abstract: "![](./figures/GA3.pdf)"
+      # highlights:
+      #   - A comprehensive model was contructed to evaluate the risk of odor occurrences
+      #   - Turbidity distribution determine underwater light and MIB-producing *Planktothrix*
+      #   - Increasing flowrate increases turbidity that can control *Planktothrix* and MIB
+      #   - Odor control based on flow regulation in source water is "green" and fundamental
+filters:
+   - latex-environment
+commands: [clab]
+---
+
+
+
+
+
+
+::: {.content-visible when-format="html"}
+# Color tip {.unnumbered}
+
+-   [Something should be deleted]{.del}
+-   [Something bad]{.bad}
+-   [Something good]{.good}
+-   [Something todo]{.todo}
+-   [Something should be added]{.add}
+-   [I am a comment]{.com}
+:::
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+# Introduction
+
+Blabla. [Bla blaBla blaBla blaBla blaBla bla     Bla bla.]{.clab options=r1q0101}
+
+# Materials and methods
+
+# Results
+
+# Discussion
+
+# Conclusions
+
+# Acknowledgements {.unnumbered}
+
+This work was financially supported by the National Natural Science Foundation of China (52030002, 51878649), and Youth Innovation Promotion Association CAS.
+
+# References {.unnumbered}
+

MS/MS.qmd

@@ -80,6 +80,8 @@ require(uniteR)
 require(langeR)
 require(patchwork)
 require(lubridate)
+biburl <- "http://drwater.rcees.ac.cn/cloud/s/ref_ming/download/Ref.bib"
+if (!isRendering) { download.file(biburl, destfile = "Ref.bib") }
 ```
 
 

RP/20231231_XX项目报告/index.html.md

@@ -0,0 +1,72 @@
+---
+author: "中国科学院生态环境研究中心"
+lang: zh
+date: today
+csl: _extensions/inst/tex/china-national-standard-gb-t-7714-2015-numeric.csl
+format:
+  html:
+    theme: cosmo
+    keep-md: true
+    css: _extensions/inst/css/style.css
+    code-link: true
+  epub: default
+  pdf:
+    pdf-engine: xelatex
+    keep-tex: false
+    toc-title: 目录
+    classoption:
+      - 12pt
+      - lang=cn
+      - chinesefont=founder # founder|ctexfont|nofont
+      - scheme=chinese
+      - color=blue # blue|green|
+      - titlestyle=hang
+      # - twoside
+    header-includes:
+      - \usepackage{ctex}
+      - \linespread{1.5}
+  docx:
+    toc: false
+    highlight-style: github
+    reference-doc: _extensions/inst/word/repcn.docx
+---
+
+
+
+
+
+
+::: {.content-visible when-format="html"}
+# Color tip {.unnumbered}
+
+-   [Something should be deleted]{.del}
+-   [Something bad]{.bad}
+-   [Something good]{.good}
+-   [Something todo]{.todo}
+-   [Something should be added]{.add}
+-   [I am a comment]{.com}
+:::
+
+
+
+
+
+
+
+
+
+
+
+
+# 摘要
+
+# 项目背景与国内外现状介绍
+
+# 主要进展1
+
+# 主要进展2
+
+# 结论与下一步计划
+
+
+# 参考文献{-}

_extensions/inst/css/style.css

@@ -57,3 +57,13 @@ ins {
     text-decoration-style: initial;
     text-decoration-thickness: 2px;
 }
+
+.clab {
+    background-color: rgb(255, 245, 240);
+}
+
+.rem {
+    background-color: darkorange;
+    color: lightyellow;
+    text-decoration-thickness: 2.0px;
+}

_quarto.yml

@@ -1,6 +1,6 @@
 title: "MANUSCRIPT TITLE"
-submitjournal: "Water Research"
-submitid: WR73679
+submitjournal: "JOURNAL"
+submitid: 
 lang: en
 date: today
 bibliography: [BB/Ref.bib, BB/localRef.bib]
@@ -43,7 +43,7 @@ crossref:
 
 project:
   type: website
-  output-dir: ../www/manuscript/protected/su2023temp/@main
+  output-dir: www/
   # render:
   #   - index.qmd
   #   - MS/SM.qmd
@@ -53,10 +53,10 @@ project:
   #   - MS/RN.qmd
   #   - MS/AC.qmd
 website:
-  title: "Version: main"
+  title: "Version: {{< var branch >}}"
   reader-mode: true
-  site-url: https://drwater.rcees.ac.cn/manuscript/protected/su2023temp/@main
-  repo-url: https://drwater.rcees.ac.cn/git/manuscript/su2023temp/src/branch/main
+  site-url: https://drwater.rcees.ac.cn/{{< var projtype >}}/{{< var reponame >}}/@{{< var branch >}}
+  repo-url: https://drwater.rcees.ac.cn/git/{{< var projtype >}}/{{< var reponame >}}/src/branch/{{< var branch >}}
   repo-actions: [edit, source, issue]
   page-navigation: true
   page-footer: "Copyright 2023, [Ming Su](https://drwater.rcees.ac.cn)"
@@ -92,9 +92,9 @@ website:
       - icon: git
         menu:
           - text: Edit
-            url: https://drwater.rcees.ac.cn/git/manuscript/su2023temp/_edit/
+            url: https://drwater.rcees.ac.cn/git/{{< var projtype >}}/{{< var reponame >}}/_edit/
           - text: Issue
-            url: https://drwater.rcees.ac.cn/git/manuscript/su2023temp/issues
+            url: https://drwater.rcees.ac.cn/git/{{< var projtype >}}/{{< var reponame >}}/issues
   comments: 
     hypothesis:
       theme: clean