update

MS/RN.qmd

@@ -13,6 +13,8 @@ filters:
   - latex-environment
   - authoraffil
 lightbox: auto
+execute:
+  excute: false
 ---
 
 ```{r}

MS/SM.qmd

@@ -17,7 +17,6 @@ format:
 filters:
   - latex-environment
   - authoraffil
-lightbox: auto
 commands: [clab]
 ---
 

RP/20231231_XX项目报告/index.qmd

@@ -1,44 +0,0 @@
----
-author: "中国科学院生态环境研究中心"
-metadata-files:
-  - ../_metadata.yml
----
-
-::: {.content-visible when-format="html"}
-# Color tip {.unnumbered}
-
--   [Something should be deleted]{.del}
--   [Something bad]{.bad}
--   [Something good]{.good}
--   [Something todo]{.todo}
--   [Something should be added]{.add}
--   [I am a comment]{.com}
-:::
-
-
-```{r}
-#| label: setup
-#| include: false
-#| cache: false
-lang <- "cn"
-RM <- "F" # global rendermode, L: load pdata; F: fast load pdf
-isRendering <- !isTRUE(getOption('knitr.in.progress'))
-require(lubridate)
-require(tidyverse)
-require(patchwork)
-require(drwateR)
-rmdify::rmd_init()
-```
-
-# 摘要
-
-# 项目背景与国内外现状介绍
-
-# 主要进展1
-
-# 主要进展2
-
-# 结论与下一步计划
-
-
-# 参考文献{-}

RP/20231231_report/index.qmd

@@ -0,0 +1,33 @@
+---
+subtitle: "Research Progress Report"
+author: ""
+format:
+  dwhm-html: default
+  dwms-docx: default
+  dwev-pdf: default
+---
+
+```{r}
+#| include: false
+lang <- "cn"
+RM <- "F" # global rendermode, L: load pdata; F: fast load pdf
+isRendering <- !isTRUE(getOption('knitr.in.progress'))
+require(lubridate)
+require(tidyverse)
+require(patchwork)
+require(drwateR)
+rmdify::rmd_init()
+```
+
+# 摘要
+
+# 研究背景与国内外现状介绍
+
+# 主要进展1
+
+# 主要进展2
+
+# 结论与下一步计划
+
+
+# 参考文献{-}

RP/_metadata.yml

@@ -50,11 +50,8 @@ CJKsansfont: "Noto Sans CJK SC"
 CJKmonofont: "Noto Sans Mono CJK SC"
 CJKoptions: |
   AutoFakeBold=true
+
 # include-in-header: header.tex
 # watermark: "drwater"
 # watermark-color: "gray!3"
-format:
+
-  dwhm-html: default
-  dwms-docx: default
-  # epub: default
-  dwev-pdf: default

RP/index.qmd

@@ -1,8 +1,10 @@
 ---
-subtitle: "Report"
+subtitle: "Reports"
+author: ""
+execute:
+  freeze: false
 ---
 
-
 ```{r}
 #| output: asis
 data.frame(fd = dir(".", pattern = "\\d{4}[-_]")) |>
@@ -26,11 +28,9 @@ data.frame(fd = dir(".", pattern = "\\d{4}[-_]")) |>
           !grepl("qmd$", .x),
           "",
           paste0(
-            "<iframe title='",
+            "{{< pdf ",
-            gsub("^.*[_-]([^\\/]*)\\/.*$", "\\1", .x),
+            gsub("qmd$", "pdf", .x),
-            "' width=800 height=600 src = '",
+            " width=400 height=510 button=\"Download\" >}}\n\n"
-            gsub("qmd$", "html", .x),
-            "'></iframe>\n\n"
           )
         )
       )

SD/20230101_outline/index.qmd

@@ -2,10 +2,6 @@
 subtitle: "Outline & Key figures"
 author: "AUTHOR"
 institute: "RCEES, CAS"
-lang: en
-background-image: _extensions/drwater/dwsd/inst/rceeslogo.svg
-format: 
-  dwsd-revealjs: default
 # filters:
 #   - watermark
 ---

SD/_metadata.yml

@@ -0,0 +1,6 @@
+author: ""
+background-image: _extensions/drwater/dwsd/inst/rceeslogo.svg
+format:
+  dwsd-revealjs: default
+execute:
+  freeze: true

SD/index.qmd

@@ -1,5 +1,8 @@
 ---
 subtitle: "Slides"
+author: ""
+execute:
+  freeze: false
 ---
 
 

_metadata-protected.yml

@@ -0,0 +1,72 @@
+project:
+  type: website
+  output-dir: www/
+  render:
+    - index.qmd
+    - version.qmd
+    - MS/SM.qmd
+    - MS/MS.qmd
+    - MS/RN.qmd
+    - MS/CL.qmd
+    - MS/HL.qmd
+    - MS/RP.qmd
+    - MS/index.qmd
+    - TC/index.qmd
+    - SD/
+    - MS/RN.qmd
+    - MS/AC.qmd
+    - RP/
+    - AC/
+    - about.qmd
+
+website:
+  navbar:
+    logo: "./_extensions/drwater/dwinst/drwater-white0.svg"
+    background: "#3D6E3B"
+    search: true
+    right:
+      - icon: house
+        text: "Home"
+        file: index.qmd
+      - text: "Main files"
+        menu:
+          - text: "Manuscript"
+            file: MS/MS.qmd
+          - text: "Supplementary Materials"
+            file: MS/SM.qmd
+          - text: "Highlights"
+            file: MS/HL.qmd
+          - text: "Revision Notes"
+            file: MS/RN.qmd
+          - text: "Cover Letter"
+            file: MS/CL.qmd
+      - text: "Slides"
+        file: SD/index.qmd
+      - text: "Links"
+        menu:
+          - text: "Version"
+            href: version.qmd
+          - text: "DRC"
+            href: "https://drc.drwater.net/"
+          - text: "Dr. Water"
+            href: "https://drwater.net/"
+      - text: "Others"
+        menu:
+          - text: "Reports"
+            file: RP/index.qmd
+          - text: "Author Credits"
+            file: MS/AC.qmd
+          - text: "Accomplishment"
+            file: AC/index.qmd
+          - text: "Trackchanges"
+            file: TC/index.qmd
+          # - text: "MS with raw bibkey"
+          #   file: MS/MS_nobib.docx
+      - text: "About"
+        file: about.qmd
+      - icon: git
+        menu:
+          - text: Codes
+            url: https://git.drwater.net/{{< var projtype >}}/{{< var reponame >}}/src/branch/{{< var branch >}}
+          - text: Issue
+            url: https://git.drwater.net/manuscript/{{< var reponame >}}/issues

_metadata-public.yml

@@ -0,0 +1,56 @@
+project:
+  type: website
+  output-dir: www/
+  render:
+    - index.qmd
+    - version.qmd
+    - MS/HL.qmd
+    - MS/SM.qmd
+    - MS/MS.qmd
+    - MS/index.qmd
+    - PS/
+    - SD/
+    - MS/AC.qmd
+    - about.qmd
+
+website:
+  navbar:
+    logo: "./_extensions/drwater/dwinst/drwater-white0.svg"
+    background: "#3D6E3B"
+    search: true
+    right:
+      - icon: house
+        text: "Home"
+        file: index.qmd
+      - text: "Main files"
+        menu:
+          - text: "Manuscript"
+            file: MS/MS.qmd
+          - text: "Supplementary Materials"
+            file: MS/SM.qmd
+          - text: "Highlights"
+            file: MS/HL.qmd
+      - text: "Poster"
+        file: PS/index.qmd
+      - text: "Slides"
+        file: SD/index.qmd
+      - text: "Links"
+        menu:
+          - text: "Version"
+            href: version.qmd
+          - text: "DRC"
+            href: "https://drc.drwater.net/"
+          - text: "Dr. Water"
+            href: "https://drwater.net/"
+      - text: "Others"
+        menu:
+          - text: "Accomplishment"
+            file: AC/index.qmd
+      - text: "About"
+        file: about.qmd
+      - icon: git
+        menu:
+          - text: Codes
+            url: https://git.drwater.net/{{< var projtype >}}/{{< var reponame >}}/src/branch/{{< var branch >}}
+          - text: Issue
+            url: https://git.drwater.net/manuscript/{{< var reponame >}}/issues

_metadata.yml

@@ -1,29 +1,12 @@
 project:
   type: website
   output-dir: www/
-  render:
-    - index.qmd
-    - version.qmd
-    - MS/SM.qmd
-    - MS/MS.qmd
-    - MS/RN.qmd
-    - MS/CL.qmd
-    - MS/HL.qmd
-    - MS/RP.qmd
-    - MS/index.qmd
-    - TC/index.qmd
-    - SD/
-    - MS/RN.qmd
-    - MS/AC.qmd
-    - RP/
-    - AC/
-    - about.qmd
 
 bibliography: [BB/Ref.bib, BB/localRef.bib]
 lang: en
 date: last-modified
-# bibliography: [BB/Ref.bib, BB/localRef.bib]
 prefer-html: true
+
 crossref:
   fig-title: Fig. # (default is "Figure")
   tbl-title: Table # (default is "Table")
@@ -98,6 +81,7 @@ crossref:
       latex-env: etb
       latex-list-of-file-extension: lost
       latex-list-of-description: Extended Data Table
+
 website:
   title: "{{< var reponame >}}: {{< var branch >}}"
   reader-mode: true
@@ -105,58 +89,12 @@ website:
   repo-url: https://git.drwater.net/{{< var projtype >}}/{{< var reponame >}}
   repo-actions: [edit, source, issue]
   page-navigation: true
-  page-footer: "Copyright 2025, [Dr. Water](https://drwater.net)"
+  page-footer: "© 2024 [DRWATER Resource Center](https://drc.drwater.net).All rights reserved.<br>Empowering Research and Innovation"
-  navbar:
+  google-analytics: "G-047QTSHC6Y"
-    logo: "./_extensions/drwater/dwinst/drwater-white0.svg"
+  twitter-card:
-    background: "#3D6E3B"
+    card-style: summary_large_image
-    search: true
+    creator: "@msu86"
-    right:
+    site: "@msu86"
-      - icon: house
-        text: "Home"
-        file: index.qmd
-      - text: "Main files"
-        menu:
-          - text: "Manuscript"
-            file: MS/MS.qmd
-          - text: "Supplementary Materials"
-            file: MS/SM.qmd
-          - text: "Revision Notes"
-            file: MS/RN.qmd
-          - text: "Cover Letter"
-            file: MS/CL.qmd
-          - text: "Highlights"
-            file: MS/HL.qmd
-      - text: "Slides"
-        file: SD/index.qmd
-      - text: "Links"
-        menu:
-          - text: "Version"
-            href: version.qmd
-          - text: "DRC"
-            href: "https://drc.drwater.net/"
-          - text: "Dr. Water"
-            href: "https://drwater.net/"
-      - text: "Others"
-        menu:
-          - text: "Reports"
-            file: RP/index.qmd
-          - text: "Author Credits"
-            file: MS/AC.qmd
-          - text: "Accomplishment"
-            file: AC/index.qmd
-          - text: "Trackchanges"
-            file: TC/index.qmd
-          # - text: "MS with raw bibkey"
-          #   file: MS/MS_nobib.docx
-      - text: "About"
-        file: about.qmd
-      - icon: git
-        menu:
-          - text: Codes
-            url: https://git.drwater.net/{{< var projtype >}}/{{< var reponame >}}/src/branch/{{< var branch >}}
-          - text: Issue
-            url: https://git.drwater.net/manuscript/{{< var reponame >}}/issues
-
   comments:
     hypothesis:
       theme: clean
@@ -186,3 +124,5 @@ watermark:
 
 revealjs-plugins:
   - pointer
+
+lightbox: auto

_metadata_pub.yml

@@ -1,164 +0,0 @@
-project:
-  type: website
-  output-dir: www/
-  render:
-    - index.qmd
-    - version.qmd
-    - MS/HL.qmd
-    - MS/SM.qmd
-    - MS/MS.qmd
-    - MS/index.qmd
-    - PS/
-    - SD/
-    - MS/AC.qmd
-    # - RP/
-    # - AC/
-    - about.qmd
-
-lang: en
-date: last-modified
-bibliography: [BB/Ref.bib, BB/localRef.bib]
-prefer-html: true
-crossref:
-  fig-title: Fig. # (default is "Figure")
-  tbl-title: Table # (default is "Table")
-  eq-title: Eq. # (default is "Equation")
-  title-delim: ":" # (default is ":")
-  fig-prefix: Fig. # (default is "Figure")
-  tbl-prefix: Table # (default is "Table")
-  eq-prefix: Eq.
-  ref-hyperlink: true # (default is true)
-  custom:
-    - kind: float
-      key: sfg
-      reference-prefix: "Supplementary Fig."
-      space-before-numbering: true
-      caption-prefix: "Supplementary Fig."
-      latex-env: sfg
-      latex-list-of-file-extension: lost
-      latex-list-of-description: Supplementary Figure
-    - kind: float
-      key: stb
-      reference-prefix: "Supplementary Table"
-      space-before-numbering: true
-      caption-prefix: "Supplementary Table"
-      latex-env: stb
-      latex-list-of-file-extension: lost
-      latex-list-of-description: Supplementary Table
-    - kind: float
-      key: seq
-      reference-prefix: "Supplementary Eq."
-      space-before-numbering: true
-      caption-prefix: "Supplementary Eq."
-      latex-env: seq
-      latex-list-of-file-extension: lost
-      latex-list-of-description: Supplementary Equation
-    - kind: float
-      key: rfg
-      reference-prefix: "Fig. R"
-      space-before-numbering: false
-      caption-prefix: "Fig. R"
-      latex-env: rfg
-      latex-list-of-file-extension: lost
-      latex-list-of-description: Revision Figure
-    - kind: float
-      key: rtb
-      reference-prefix: "Table R"
-      space-before-numbering: false
-      caption-prefix: "Table R"
-      latex-env: rtb
-      latex-list-of-file-extension: lost
-      latex-list-of-description: Revision Table
-    - kind: float
-      key: req
-      reference-prefix: "Eq R"
-      space-before-numbering: false
-      caption-prefix: "Eq R"
-      latex-env: req
-      latex-list-of-file-extension: lost
-      latex-list-of-description: Revision Equation
-    - kind: float
-      key: efg
-      reference-prefix: "Extended Data Fig."
-      space-before-numbering: true
-      caption-prefix: "Extended Data Fig."
-      latex-env: efg
-      latex-list-of-file-extension: lost
-      latex-list-of-description: Extended Data Figure
-    - kind: float
-      key: etb
-      reference-prefix: "Extended Data Table"
-      space-before-numbering: true
-      caption-prefix: "Extended Data Table"
-      latex-env: etb
-      latex-list-of-file-extension: lost
-      latex-list-of-description: Extended Data Table
-website:
-  title: "{{< var reponame >}}: {{< var branch >}}"
-  reader-mode: true
-  site-url: https://drc.drwater.net/{{< var projtype >}}/{{< var reponame >}}/{{< var branch >}}
-  repo-url: https://git.drwater.net/{{< var projtype >}}/{{< var reponame >}}
-  repo-actions: [edit, source, issue]
-  page-navigation: true
-  page-footer: "Copyright 2025, [Dr. Water](https://drwater.net)"
-  navbar:
-    logo: "./_extensions/drwater/dwinst/drwater-white0.svg"
-    background: "#3D6E3B"
-    search: true
-    right:
-      - icon: house
-        text: "Home"
-        file: index.qmd
-      - text: "Main files"
-        menu:
-          - text: "Manuscript"
-            file: MS/MS.qmd
-          - text: "Supplementary Materials"
-            file: MS/SM.qmd
-          - text: "Highlights"
-            file: MS/HL.qmd
-      - text: "Poster"
-        file: PS/index.qmd
-      - text: "Slides"
-        file: SD/index.qmd
-      - text: "Links"
-        menu:
-          - text: "Version"
-            href: version.qmd
-          - text: "DRC"
-            href: "https://drc.drwater.net/"
-          - text: "Dr. Water"
-            href: "https://drwater.net/"
-      - text: "Others"
-        menu:
-          # - text: "Reports"
-          #   file: RP/index.qmd
-          # - text: "Author Credits"
-          #   file: MS/AC.qmd
-          - text: "Accomplishment"
-            file: AC/index.qmd
-          # - text: "Trackchanges"
-          # file: TC/index.qmd
-          # - text: "MS with raw bibkey"
-          #   file: MS/MS_nobib.docx
-      - text: "About"
-        file: about.qmd
-      - icon: git
-        menu:
-          - text: Codes
-            url: https://git.drwater.net/{{< var projtype >}}/{{< var reponame >}}/src/branch/{{< var branch >}}
-          - text: Issue
-            url: https://git.drwater.net/manuscript/{{< var reponame >}}/issues
-
-  comments:
-    hypothesis:
-      theme: clean
-      openSidebar: false
-
-execute:
-  freeze: true # re-render only when source changes
-  cache: false
-  echo: false
-
-format:
-  dwhm-html: default

_quarto.yml

@@ -62,3 +62,5 @@ affiliations:
 
 metadata-files:
   - _metadata.yml
+  - _metadata-protected.yml
+