diff --git a/MS/AC.qmd b/MS/AC.qmd index 474004c..b32a0a1 100644 --- a/MS/AC.qmd +++ b/MS/AC.qmd @@ -1,26 +1,11 @@ --- format: - elsevier-html: - css: _extensions/inst/css/style.css - docx: - reference-doc: _extensions/inst/word/MS.docx - elsevier-pdf: - latex-clean: false - header-includes: - # - \usepackage{threeparttable} - # - \usepackage{fontspec} - # - \usepackage{endfloat} - - \setmainfont{Calibri} - # - \usepackage[UTF8, scheme=plain]{ctex} - # - \usepackage{float} - - \usepackage[normalem]{ulem} - - \usepackage[doublespacing]{setspace} - journal: - formatting: preprint - model: 1p - cite-style: authoryear + dwms-html: default + dwms-docx: default + dwms-pdf: default filters: - - authors-block + - latex-environment + - authoraffil --- # CRediT authorship contribution statement {-} diff --git a/MS/CL.qmd b/MS/CL.qmd index f37d3b6..185a5b5 100644 --- a/MS/CL.qmd +++ b/MS/CL.qmd @@ -1,19 +1,15 @@ --- format: - html: - css: _extensions/inst/css/style.css - pdf: - latex_engine: xelatex - keep-tex: false - keep-md: false - template: _extensions/inst/tex/cv.tex + dwcl-html: default + dwcl-docx: default + dwcl-pdf: default date: today author: "Min Yang" affliction: State Key Laboratory of Environmental Aquatic Chemistry, Research Center for Eco-Environmental Sciences, Chinese Academy of Sciences from_email: "yangmin@rcees.ac.cn" from_phone: "+86 (10) 62843038" -from_institution_logo: "_extensions/inst/img/rceeslonglogo.png" -from_sign: "_extensions/inst/img/signmy.png" +from_institution_logo: "_extensions/drwater/dwcl/inst/rceeslonglogo.pdf" +from_sign: "_extensions/drwater/dwcl/inst/signmy.pdf" from_position: "Vice Director, Professor" from_professional_title: "Ph.D." from_institution: "Chinese Academy of Sciences" @@ -31,3 +27,4 @@ Thank you for your consideration our manuscript (`{{< meta submitid >}}`) in pub We have carefully revised the manuscript according to each comment from the reviewers. As requested, revision note with point to point responses and actions, change tracking manuscript and revised manuscript have been prepared and included in the revision submission. We believe that the paper has been greatly improved. Looking forward to your further instruction regarding its publication. + diff --git a/MS/GA.qmd b/MS/GA.qmd index b1e3e13..aa25082 100644 --- a/MS/GA.qmd +++ b/MS/GA.qmd @@ -1,22 +1,15 @@ --- +subtitle: "Graphical Abstract" format: - docx: - reference-doc: _extensions/inst/word/MS.docx - filters: - - author-info-blocks - elsevier-html: - filters: - - author-info-blocks - css: _extensions/inst/css/style.css - elsevier-pdf: - header-includes: - - \setmainfont{Calibri} - - \usepackage[normalem]{ulem} - - \usepackage[doublespacing]{setspace} + dwms-html: default + dwms-docx: default + dwms-pdf: default +filters: + - latex-environment + - authoraffil --- -# Graphical Abstract {-} - +# diff --git a/MS/HL.qmd b/MS/HL.qmd index 9c55ae0..950117b 100644 --- a/MS/HL.qmd +++ b/MS/HL.qmd @@ -1,21 +1,16 @@ --- +subtitle: "Highlights" +date: "" format: - elsevier-html: - filters: - - author-info-blocks - css: _extensions/inst/css/style.css - docx: - reference-doc: _extensions/inst/word/MS.docx - filters: - - author-info-blocks - elsevier-pdf: - header-includes: - - \setmainfont{Calibri} - - \usepackage[normalem]{ulem} - - \usepackage[doublespacing]{setspace} + dwms-html: default + dwms-docx: default + dwms-pdf: default +filters: + - latex-environment + - authoraffil --- -# Highlights {-} +# - A comprehensive model was contructed to evaluate the risk of odor occurrences - Turbidity distribution determine underwater light and MIB-producing *Planktothrix* diff --git a/MS/MS.aux b/MS/MS.aux deleted file mode 100644 index 792cadc..0000000 --- a/MS/MS.aux +++ /dev/null @@ -1,21 +0,0 @@ -\relax -\providecommand\zref@newlabel[2]{} -\providecommand*\new@tpo@label[2]{} -\providecommand \babel@aux [2]{\global \let \babel@toc \@gobbletwo } -\@nameuse{bbl@beforestart} -\providecommand\hyper@newdestlabel[2]{} -\providecommand*\HyPL@Entry[1]{} -\HyPL@Entry{0<>} -\babel@aux{english}{} -\newlabel{abstract}{{}{2}{Abstract}{section*.1}{}} -\@writefile{toc}{\contentsline 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-date: "" -bibliography: [../BB/Ref.bib, ../BB/localRef.bib] -# csl: https://www.zotero.org/styles/elsevier-harvard -csl: ./_extensions/inst/tex/american-chemical-society.csl -# csl: ./_extensions/inst/tex/nature.csl -# titlegraphical: "../figures/GA.pdf" -format: - elsevier-html: - toc: true - css: _extensions/inst/css/style.css - keep-md: true - epub: default - docx: - reference-doc: _extensions/inst/word/MS.docx - pdf: - # documentclass: article - latex-clean: false # to keep aux - citecolor: blue - colorlinks: true - number-sections: false - sansfont: "Gill Sans" - papersize: a4paper - sansfontoptions: - # - Color=39729E - - Color=2A303B - mainfont: "Source Sans 3" #| Verdana (fontsize: 11pt) # Source Sans 3 | Times New Roman| Helvetica | PT Sans - monofont: "JetBrains Mono" - mathfont: "Cambria Math" - CJKmainfont: SimHei - fontsize: 12pt - keep-md: false - include-in-header: "./_extensions/inst/tex/header.tex" - header-includes: - # - \usepackage{threeparttable} - # - \usepackage{fontspec} - # - \usepackage{endfloat} - # - \usepackage[UTF8, scheme=plain]{ctex} - - \usepackage{float} - - \usepackage[normalem]{ulem} - - \usepackage[doublespacing]{setspace} - - \usepackage{lineno} - - \linenumbers - - \usepackage{caption} - - \captionsetup{singlelinecheck=off} - # elsevier-pdf: - # keep-tex: true - # keep-md: false - # include-in-header: "./_extensions/quarto-journals/elsevier/partials/revision.tex" - # latex-clean: false - # header-includes: - # # - \usepackage{threeparttable} - # # - \usepackage{fontspec} - # # - \usepackage{endfloat} - # - \setmainfont{Calibri} - # - \usepackage[UTF8, scheme=plain]{ctex} - # - \usepackage{float} - # - \usepackage[normalem]{ulem} - # - \usepackage[doublespacing]{setspace} - # - \usepackage{lineno} - # - \linenumbers - # journal: - # # - A comprehensive model was contructed to evaluate the risk of odor occurrences - # # - Turbidity distribution determine underwater light and MIB-producing *Planktothrix* - # # - Increasing flowrate increases turbidity that can control *Planktothrix* and MIB - # # - Odor control based on flow regulation in source water is "green" and fundamental - # formatting: preprint # preprint | review | doublebind - # model: 1p - # cite-style: authoryear - # # graphical-abstract: "![](../figures/GA.pdf)" - # # highlights: -filters: - - latex-environment - - authors-block -lightbox: auto -commands: [clab] ---- - - - - - -{{< pagebreak >}} - -# Abstract {-} - - -{{< pagebreak >}} - -# Main - - -# Methods - - -# Results - - - - -{{< pagebreak >}} - - - -# References {-} - -::: {#refs} -::: - -{{< pagebreak >}} - - diff --git a/MS/MS.qmd b/MS/MS.qmd index 1d482c4..2bf2639 100644 --- a/MS/MS.qmd +++ b/MS/MS.qmd @@ -8,79 +8,22 @@ smname: SM highlights: "" date: "" bibliography: [../BB/Ref.bib, ../BB/localRef.bib] -# csl: https://www.zotero.org/styles/elsevier-harvard -csl: ./_extensions/inst/tex/american-chemical-society.csl -# csl: ./_extensions/inst/tex/nature.csl +csl: 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\usepackage[normalem]{ulem} - - \usepackage[doublespacing]{setspace} - - \usepackage{lineno} + - \usepackage{endfloat} + - \doublespacing - \linenumbers - - \usepackage{caption} - - \captionsetup{singlelinecheck=off} - # elsevier-pdf: - # keep-tex: true - # keep-md: false - # include-in-header: "./_extensions/quarto-journals/elsevier/partials/revision.tex" - # latex-clean: false - # header-includes: - # # - \usepackage{threeparttable} - # # - \usepackage{fontspec} - # # - \usepackage{endfloat} - # - \setmainfont{Calibri} - # - \usepackage[UTF8, scheme=plain]{ctex} - # - \usepackage{float} - # - \usepackage[normalem]{ulem} - # - \usepackage[doublespacing]{setspace} - # - \usepackage{lineno} - # - \linenumbers - # journal: - # # - A comprehensive model was contructed to evaluate the risk of odor occurrences - # # - Turbidity distribution determine underwater light and MIB-producing *Planktothrix* - # # - Increasing flowrate increases turbidity that can control *Planktothrix* and MIB - # # - Odor control based on flow regulation in source water is "green" and fundamental - # formatting: preprint # preprint | review | doublebind - # model: 1p - # cite-style: authoryear - # # graphical-abstract: "![](../figures/GA.pdf)" - # # highlights: filters: - latex-environment - - authors-block -lightbox: auto -commands: [clab] + - authoraffil --- diff --git a/MS/MS.tex b/MS/MS.tex new file mode 100644 index 0000000..e0276f1 --- /dev/null +++ b/MS/MS.tex @@ -0,0 +1,418 @@ +% Options for packages loaded elsewhere +% Options for packages loaded elsewhere +\PassOptionsToPackage{unicode}{hyperref} +\PassOptionsToPackage{hyphens}{url} +\PassOptionsToPackage{dvipsnames,svgnames,x11names}{xcolor} +\PassOptionsToPackage{space}{xeCJK} +% +\documentclass[ + english, + 12pt, + letterpaper, +]{article} +\usepackage{xcolor} +\usepackage[margin=1in]{geometry} +\usepackage{amsmath,amssymb} +\setcounter{secnumdepth}{-\maxdimen} % remove section numbering +\usepackage{iftex} +\ifPDFTeX + 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+\usepackage{xr-hyper} +\usepackage[normalem]{ulem} +\usepackage{setspace} +\usepackage{lineno} +\usepackage{caption} +\captionsetup{singlelinecheck=off} +\usepackage[UTF8, scheme=plain]{ctex} +\usepackage{orcidlink} + +% \setkomafont{author}{\normalsize} + +% for revision +\usepackage{adjustbox} +% \usepackage{xcolor} +\usepackage{mdframed} +\newmdenv[topline=false, + leftline=true, + bottomline=false, + rightline=false, + linewidth=3pt, + %backgroundcolor=lightgray, + linecolor=gray!30, + backgroundcolor=gray!5, + skipabove=\topsep, + skipbelow=\topsep, + leftmargin=0pt, + rightmargin=0pt, + innertopmargin=0pt, + innerbottommargin=0pt + ]{refquote} +\newmdenv[topline=false, + leftline=true, + bottomline=false, + rightline=false, + linewidth=3pt, + %backgroundcolor=lightgray, + backgroundcolor=red!3!white, + linecolor=red!30!white, + skipabove=\topsep, + skipbelow=\topsep, + leftmargin=0pt, + rightmargin=0pt, + innertopmargin=10pt, + innerbottommargin=10pt + ]{question} +% setup hyperlink for page and line number +\def\msname{MS} +\def\smname{SM} +\setenumerate{labelsep=*, leftmargin=1.0pc} +%\zexternaldocument*{ManuscriptNew\veraa} +\zexternaldocument*{\msname} +\zexternaldocument*{\smname} +\newcommand{\hlabel}[1]{\label{#1}\hypertarget{#1}{ + \linelabel{line:#1}}} +%\externaldocument[si-]{\smname\veraa}[\smname\veraa.pdf] +\makeatletter +\newcommand{\clab}[2][]{ + \protected@write\@auxout{\let\clab\@secondoftwo}{ + \string\newlabel{r:#1}{{#2}{}}}% + \hlabel{#1}#2\hlabel{#1end}} +\makeatother +\newcommand{\zhypera}[1]{\href[pdfnewwindow]{\msname.pdf\##1}{\\[1ex]\textbf{Page \zpageref{#1}, Line +\zref{line:#1}--\zref{line:#1end}:}\\}} +\newcommand{\cref}[1]{\begin{refquote}\zhypera{#1}{\zref{r:#1}}\\[-0.5ex]\end{refquote}} +% \newenvironment{ra}[1][\unskip]{\par \noindent \\[-1ex] \textbf{Response/Action:}\par\bf}{\ \\} +\renewenvironment{quote}{\begin{question}}{\end{question}} +% \renewenvironment{verbatim}{\begin{ra}}{\end{ra}} + + + + +% ----------------- 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+\makeatletter +\makeatother +\makeatletter +\@ifpackageloaded{caption}{}{\usepackage{caption}} +\@ifpackageloaded{subcaption}{}{\usepackage{subcaption}} +\makeatother +\usepackage{bookmark} +\IfFileExists{xurl.sty}{\usepackage{xurl}}{} % add URL line breaks if available +\urlstyle{same} +\hypersetup{ + pdftitle={MANUSCRIPT TITLE}, + pdfauthor={, , and }, + pdflang={en}, + colorlinks=true, + linkcolor={blue}, + filecolor={Maroon}, + citecolor={Blue}, + urlcolor={blue}, + pdfcreator={LaTeX via pandoc}} + + +\title{MANUSCRIPT TITLE} +\author{\footnotesize Xxxxx +Yyyy\textsuperscript{a,\#} \and \footnotesize Ming +Su\textsuperscript{\orcidlink{0000000198211268},a,b,\#,*} \and \footnotesize Min +Yang\textsuperscript{a,b,*}} +\date{} +\begin{document} + +% for some reason this does not work in header +\renewcommand{\abstractname}{Abstract.} + +% add the short title to the fancy header + +\maketitle +%\noindent \rule{\linewidth}{.5pt} +%\noindent \rule{\linewidth}{.5pt} + + +\textsuperscript{\#} These authors contributed equally to this work. + +\textsuperscript{a} State Key Laboratory of Environmental Aquatic +Chemistry, Research Center for Eco-Environmental Sciences, Chinese +Academy of Sciences, Beijing 100085, China.\\ +\textsuperscript{b} University of Chinese Academy of Sciences, Beijing +100049, China. + +\textsuperscript{*} Corresponding to: +\href{mailto:mingsu@rcees.ac.cn}{Ming Su (mingsu@rcees.ac.cn)}, +\href{mailto:yangmin@rcees.ac.cn}{Min Yang (yangmin@rcees.ac.cn)} + +\newpage{} + +\section*{Abstract}\label{abstract} +\addcontentsline{toc}{section}{Abstract} + +\newpage{} + +\section{Main}\label{main} + +\section{Methods}\label{methods} + +\section{Results}\label{results} + +\newpage{} + +\section*{References}\label{references} +\addcontentsline{toc}{section}{References} + +\phantomsection\label{refs} + +\newpage{} + + + + +\end{document} diff --git a/MS/RN.qmd b/MS/RN.qmd index fc0555a..2cc9af1 100644 --- a/MS/RN.qmd +++ b/MS/RN.qmd @@ -4,60 +4,34 @@ msname: MS smname: SM # date: last-modified bibliography: [../BB/Ref.bib, ../BB/localRef.bib] -csl: _extensions/inst/tex/elsevier-harvard.csl +csl: _extensions/drwater/dwinst/nature.csl format: - elsevier-html: - filters: - - author-info-blocks - css: _extensions/inst/css/style.css - docx: - reference-doc: _extensions/inst/word/MS.docx - filters: - - author-info-blocks - elsevier-pdf: + dwms-html: default + dwms-docx: default + dwms-pdf: number-sections: true - classoption: [nopreprintline] - include-in-header: "./_extensions/quarto-journals/elsevier/partials/revision.tex" latex-clean: true header-includes: - # - \usepackage{threeparttable} - # - \usepackage{fontspec} - # - \usepackage{endfloat} - - \setmainfont{Calibri} - - \usepackage[UTF8, scheme=plain]{ctex} - # - \usepackage{float} - - \usepackage[normalem]{ulem} - - \usepackage[doublespacing]{setspace} - \renewcommand{\thetable}{R\arabic{table}} - \renewcommand{\thefigure}{R\arabic{figure}} - \renewcommand{\theequation}{R\arabic{equation}} - \renewcommand{\figurename}{Figure} - \renewcommand{\tablename}{Table} - journal: - name: {{< meta submitjournal >}} - formatting: preprint # preprint | review | doublebind - model: 1p - cite-style: authoryear +filters: + - latex-environment + - authoraffil --- ```{r} #| include: false #| cache: false lang <- "en" -RM <- "F" # global rendermode, L: load pdata; F: fast load pdf -isrendering = isTRUE(getOption('knitr.in.progress')) -require(lubridate) +RM <- "F" # global rendermode, L: load pdata; F: fast load pdf +isrendering <- isTRUE(getOption('knitr.in.progress')) require(tidyverse) require(patchwork) require(drwateR) -require(dwfun) -require(rmdify) rmdify::rmd_init() -require(langeR) -require(dateR) -require(uniteR) -require(readxl) -Palette <- c("#515ee8", "#62e856", "#e86056", "#e8de51", "#0072B2", "#D551C0", "#CC79A7","#56E9AC") ``` # Response to Editor diff --git a/MS/Ref.bib b/MS/Ref.bib deleted file mode 100644 index ec28524..0000000 --- a/MS/Ref.bib +++ /dev/null @@ -1,35337 +0,0 @@ -@Article{acero2005kinetics, - title = {Kinetics and Mechanisms of Formation of Bromophenols During Drinking Water Chlorination: Assessment of Taste and Odor Development}, - author = {Juan L. Acero and Philippe Piriou and Urs Von Gunten}, - year = 2005, - journal = {Water Research}, - volume = 39, - pages = {2979--2993}, - url = {http://www.sciencedirect.com/science/article/pii/S0043135405002289}, - number = 13, - doi = {10.1016/j.watres.2005.04.055} -} - -@Article{acinas2009phenotypic, - title = {Phenotypic and Genetic Diversification of {{\textit{Pseudanabaena}}} spp.(cyanobacteria)}, - author = {Acinas, Silvia G and Haverkamp, Thomas HA and Huisman, Jef and Stal, Lucas J}, - year = 2009, - journal = {The ISME Journal}, - publisher = {Nature Publishing Group}, - volume = 3, - pages = 31, - url = {https://www.nature.com/articles/ismej200878}, - number = 1, - doi = {10.1038/ismej.2008.78} -} - -@Article{acuna2012sublethal, - title = {Sublethal Dietary Effects of Microcystin Producing {{\textit{Microcystis}}} on {Threadfin} {Shad}, {Dorosoma} {Petenense}}, - author = {Shawn Acu{\u{n}}a and Dolores Baxa and Swee Teh}, - year = 2012, - journal = {Toxicon}, - volume = 60, - pages = {1191--1202}, - url = {http://www.sciencedirect.com/science/article/pii/S0041010112007179}, - number = 6, - doi = {10.1016/j.toxicon.2012.08.004} -} - -@Article{adam2011temporal, - title = {Temporal and Spatial Distribution of Harmful Algal Bloom {(HAB)} Species in Coastal Waters of {Kota} {Kinabalu}, {Sabah}, {Malaysia}}, - author = {Aimimuliani Adam and Normawaty Mohammad-Noor and Ann Anton and Ejria Saleh and Shahbudin Saad and Sitti Raehanah Muhd Shaleh}, - year = 2011, - journal = {Harmful Algae}, - volume = 10, - pages = {495--502}, - url = {http://www.sciencedirect.com/science/article/pii/S1568988311000321}, - number = 5, - doi = {10.1016/j.hal.2011.03.006} -} - -@Article{adams1974cubic, - title = {Cubic Spline Curve Fitting With Controlled End Conditions}, - author = {J.A. Adams}, - year = 1974, - journal = {Computer-Aided Design}, - volume = 6, - pages = {2--9}, - url = {http://www.sciencedirect.com/science/article/pii/0010448574901328}, - number = 1, - doi = {10.1016/0010-4485(74)90132-8} -} - -@Article{adelman1982sodium, - title = {Sodium Channels Blocked by Aphantoxin Obtained From the Blue-green Alga, {{\textit{Aphanizomenon flos-aquae}}}}, - author = {William J. Adelman and Jürgen F. Fohlmeister and John J. Sasner and Miyoshi Ikawa}, - year = 1982, - journal = {Toxicon}, - volume = 20, - pages = {513--516}, - url = {http://www.sciencedirect.com/science/article/pii/0041010182900174}, - number = 2, - doi = {10.1016/0041-0101(82)90017-4} -} - -@Article{adolf2006environmental, - title = {Environmental Forcing of Phytoplankton Floral Composition, Biomass, and Primary Productivity in {Chesapeake Bay, {USA}}}, - author = {Jason E. Adolf and Christina L. Yeager and W. David Miller and Michael E. Mallonee and Lawrence W. Harding Jr.}, - year = 2006, - journal = {Estuarine, Coastal and Shelf Science}, - volume = 67, - pages = {108--122}, - url = {http://www.sciencedirect.com/science/article/pii/S027277140500377X}, - number = {1–2}, - doi = {10.1016/j.ecss.2005.11.030} -} - -@Article{agawin2007competition, - title = {Competition and Facilitation Between Unicellular Nitrogen-fixing Cyanobacteria and Non-nitrogen-fixing Phytoplankton Species}, - author = {Agawin, NS and Rabouille, Sophie and Veldhuis, M and Servatius, Lidewij and Hol, Suzanne and Van Overzee, Harri{\"e}t MJ and Huisman, Jef}, - year = 2007, - journal = {Limnology and Oceanography}, - volume = 52, - pages = {2233--2248}, - number = 5 -} - -@Article{agger2008identification, - title = {Identification of Sesquiterpene Synthases From {{\textit{Nostoc Punctiforme}}} PCC 73102 and {{\textit{Nostoc}}} sp.~{Strain PCC} 7120}, - author = {Agger, Sean A. and Lopez-Gallego, Fernando and Hoye, Thomas R. and Schmidt-Dannert, Claudia}, - year = 2008, - journal = {Journal of Bacteriology}, - volume = 190, - pages = {6084--6096}, - url = {http://jb.asm.org/content/190/18/6084.abstract}, - number = 18, - doi = {10.1128/JB.00759-08} -} - -@Article{ahern2007nutrient, - title = {Nutrient Additions Generate Prolific Growth of {{\textit{Lyngbya Majuscula}}} (cyanobacteria) in Field and Bioassay Experiments}, - author = {Kathleen S. Ahern and Colin R. Ahern and James W. Udy}, - year = 2007, - journal = {Harmful Algae}, - volume = 6, - pages = {134--151}, - url = {http://www.sciencedirect.com/science/article/pii/S1568988306001016}, - number = 1, - doi = {10.1016/j.hal.2006.08.004} -} - -@Article{aksnes1991theoretical, - title = {A Theoretical Model for Nutrient Uptake in Phytoplankton}, - author = {Aksnes, D. L. and Egge, J. K.}, - year = 1991, - journal = {Marine Ecology Progress Series}, - volume = 70, - pages = {65--72}, - number = 1 -} - -@Book{albert2012r, - booktitle = {R by Example}, - title = {R by Example}, - author = {Albert, Jim and Rizzo, Maria}, - year = 2012, - publisher = {Springer New York}, - pages = {1--359}, - url = {http://dx.doi.org/10.1007/978-1-4614-1365-3}, - isbn = {978-1-4614-1364-6}, - doi = {10.1007/978-1-4614-1365-3}, - language = {English} -} - -@Article{alghanmi2018effect, - title = {Effect of Light and Temperature on New Cyanobacteria Producers for Geosmin and 2-methylisoborneol}, - author = {Alghanmi, Haider A. and Alkam, Fo'ad M. and AL-Taee, Mysoon M.}, - year = 2018, - month = {Feb}, - journal = {Journal of Applied Phycology}, - volume = 30, - pages = {319--328}, - url = {https://doi.org/10.1007/s10811-017-1233-0}, - number = 1, - doi = {10.1007/s10811-017-1233-0} -} - -@Article{aliya1989studies, - title = {Studies on Photosynthetic Rates and Species Composition of An Epilithic Periphyton Community in A Stream At {Fresno, California {USA}}}, - author = {Aliya, R. and Arce, G.}, - year = 1989, - journal = {Pak. J. Bot}, - volume = 21, - pages = 43 -} - -@Article{alster2010morphology, - title = {Morphology and Phylogeny of A Non-toxic Invasive {{\textit{Cylindrospermopsis raciborskii}}} From A Mediterranean Lake}, - author = {Alster, Alla and Kaplan-Levy, RuthN. and Sukenik, Assaf and Zohary, Tamar}, - year = 2010, - journal = {Hydrobiologia}, - publisher = {Springer Netherlands}, - volume = 639, - pages = {115--128}, - url = {http://dx.doi.org/10.1007/s10750-009-0044-y}, - language = {English}, - doi = {10.1007/s10750-009-0044-y} -} - -@Book{american2010algae, - title = {Algae: Source to Treatment}, - author = {AWWA, American Water Works Association}, - year = 2010, - publisher = {American Water Works Association} -} - -@Article{an2011quantitative, - title = {Quantitative Health Risk Assessment of Cryptosporidium in Rivers of {Southern {China}} Based on Continuous Monitoring}, - author = {An, Wei and Zhang, Dongqing and Xiao, Shumin and Yu, Jianwei and Yang, Min}, - year = 2011, - journal = {Environmental Science \& Technology}, - volume = 45, - pages = {4951--4958}, - url = {http://dx.doi.org/10.1021/es103981w}, - number = 11, - doi = {10.1021/es103981w}, - note = {PMID: 21557575}, - eprint = {http://dx.doi.org/10.1021/es103981w} -} - -@Article{anagnostidis1988modern, - title = {Modern Approach to the Classification System of Cyanophytes. 3 - Oscillatoriales}, - author = {Anagnostidis, Konstantinos and Komárek, Jiří}, - year = 1988, - month = 01, - journal = {Algological Studies/Archiv Für Hydrobiologie, Supplement Volumes}, - publisher = {Schweizerbart Science Publishers}, - volume = {50-53}, - pages = {327--472}, - url = {http://www.schweizerbart.de//papers/archiv\_algolstud/detail/50-53/65276/Modern\_approach\_to\_the\_classification\_system\_of\_cyanophytes\_3\_Oscillatoriales}, - address = {Stuttgart, Germany} -} - -@Book{andersen2005algal, - title = {Algal Culturing Techniques}, - author = {Andersen, Robert Arthur}, - year = 2005, - publisher = {Academic Press} -} - -@Article{anderson2002harmful, - title = {Harmful Algal Blooms and Eutrophication: Nutrient Sources, Composition, and Consequences}, - author = {Anderson, DonaldM. and Glibert, PatriciaM. and Burkholder, JoannM.}, - year = 2002, - journal = {Estuaries}, - publisher = {Springer-Verlag}, - volume = 25, - pages = {704--726}, - url = {http://dx.doi.org/10.1007/BF02804901}, - number = 4, - doi = {10.1007/BF02804901}, - language = {English} -} - -@Article{anderson2012progress, - title = {Progress in Understanding Harmful Algal Blooms: Paradigm Shifts and New Technologies for Research, Monitoring, and Management}, - author = {Anderson, Donald M. and Cembella, Allan D. and Hallegraeff, Gustaaf M.}, - year = 2012, - journal = {Annual Review of Marine Science}, - volume = 4, - pages = {143--176}, - url = {http://dx.doi.org/10.1146/annurev-marine-120308-081121}, - number = 1, - doi = {10.1146/annurev-marine-120308-081121}, - note = {PMID: 22457972}, - eprint = {http://dx.doi.org/10.1146/annurev-marine-120308-081121} -} - -@Article{antweiler2008evaluation, - title = {Evaluation of Statistical Treatments of Left-Censored Environmental Data Using Coincident Uncensored Data Sets: I. Summary Statistics}, - author = {Antweiler, Ronald C. and Taylor, Howard E.}, - year = 2008, - journal = {Environmental Science \& Technology}, - volume = 42, - pages = {3732--3738}, - url = {http://dx.doi.org/10.1021/es071301c}, - number = 10, - doi = {10.1021/es071301c}, - note = {PMID: 18546715}, - eprint = {http://dx.doi.org/10.1021/es071301c} -} - -@Article{aoyama1990growth, - title = {Growth Characteristic and Geosmin Production of {{\textit{Anabaena macrospora}}}}, - author = {Kan Aoyama and Banichi Tomita and Kunio Chaya}, - year = 1990, - journal = {Japanses Journal of Toxicology and Environmental Health}, - volume = 36, - pages = {21--27}, - number = 1 -} - -@Article{aparicio2013coupling, - title = {Coupling Hydrodynamics and Buoyancy Regulation in {{\textit{Microcystis aeruginosa}}} for Its Vertical Distribution in Lakes}, - author = {E. Aparicio Medrano and R.E. Uittenbogaard and L.M. Dionisio Pires and B.J.H. Van De Wiel and H.J.H. Clercx}, - year = 2013, - journal = {Ecological Modelling}, - volume = 248, - pages = {41--56}, - url = {http://www.sciencedirect.com/science/article/pii/S0304380012004784}, - doi = {10.1016/j.ecolmodel.2012.08.029} -} - -@Article{apha1995wef, - title = {WEF, 1998}, - author = {Apha, Awwa}, - year = 1995, - journal = {Standard Methods for the Examination of Water and Wastewater}, - volume = 20 -} - -@Misc{apha1998wef, - title = {WEF, Standard Methods for the Examination of Water and Wastewater 20th Edition}, - author = {{APHA, A.}}, - year = 1998, - publisher = {American Public Health Association: Washington, DC} -} - -@Article{arcuti2013spatio, - title = {Spatio-temporal Modelling of Zero-inflated Deep-sea Shrimp Data by Tweedie Generalized Additive}, - author = {Simona Arcuti and Crescenza Calculli and Alessio Pollice and Gianfranco D'Onghia and Porzia Maiorano and Angelo Tursi}, - year = 2013, - journal = {Statistica}, - volume = 73, - pages = {87--101}, - url = {https://rivista-statistica.unibo.it/article/view/3987}, - number = 1, - doi = {10.6092/issn.1973-2201/3987} -} - -@Article{arhonditsis2003environmental, - title = {Environmental Control and Limnological Impacts of A Large Recurrent Spring Bloom in {Lake Washington}, {USA}}, - author = {Arhonditsis, G. and Brett, M. T. and Frodge, J.}, - year = 2003, - journal = {Environmental Management}, - publisher = {Springer-Verlag}, - volume = 31, - pages = {0603--0618}, - url = {http://dx.doi.org/10.1007/s00267-002-2891-4}, - language = {English}, - doi = {10.1007/s00267-002-2891-4} -} - -@InBook{aronow1982aronow, - title = {Shoreline Development Ratioshoreline Development Ratio}, - author = {Aronow, Saul}, - year = 1982, - booktitle = {Beaches and Coastal Geology}, - publisher = {Springer US}, - pages = {754--755}, - url = {http://dx.doi.org/10.1007/0-387-30843-1_417}, - address = {Boston, MA}, - isbn = {978-0-387-30843-2}, - doi = {10.1007/0-387-30843-1_417} -} - -@InProceedings{asaeda2010effects, - title = {Effects of Hydrological Changes on Algal Blooming in the Reservoir and the Required Modification for Treatments}, - author = {Asaeda, T and Rashid, MH}, - year = 2010, - booktitle = {Proceedings of 8th International Symposium on Ecohydraulics, Seoul}, - pages = {91--97} -} - -@Article{asquith2018distribution, - title = {Distribution, Abundance and Activity of Geosmin and 2-methylisoborneol-producing Streptomyces in Drinking Water Reservoirs}, - author = {Elise Asquith and Craig Evans and R. Hugh Dunstan and Phillip Geary and Bruce Cole}, - year = 2018, - journal = {Water Research}, - volume = 145, - pages = {30--38}, - url = {http://www.sciencedirect.com/science/article/pii/S0043135418306341}, - doi = {10.1016/j.watres.2018.08.014} -} - -@Article{atkinson1995effects, - title = {Effects of Temperature on the Size of Aquatic Ectotherms: Exceptions to the General Rule}, - author = {David Atkinson}, - year = 1995, - journal = {Journal of Thermal Biology}, - volume = 20, - pages = {61--74}, - url = {http://www.sciencedirect.com/science/article/pii/030645659400028H}, - number = {1--2}, - doi = {10.1016/0306-4565(94)00028-H} -} - -@Article{auffret2011establishment, - title = {Establishment of A {Real-time PCR} Method for Quantification of Geosmin-producing {{\textit{Streptomyces}}} spp.~in Recirculating Aquaculture Systems}, - author = {Marc Auffret and Alexandre Pilote and {\'E}milie Proulx and Daniel Proulx and Grant Vandenberg and Richard Villemur}, - year = 2011, - journal = {Water Research}, - volume = 45, - pages = {6753 -- 6762}, - url = {http://www.sciencedirect.com/science/article/pii/S004313541100618X}, - number = 20, - doi = {10.1016/j.watres.2011.10.020} -} - -@Article{austin2007species, - title = {Species Distribution Models and Ecological Theory: A Critical Assessment and Some Possible New Approaches}, - author = {Mike Austin}, - year = 2007, - journal = {Ecological Modelling}, - volume = 200, - pages = {1--19}, - url = {http://www.sciencedirect.com/science/article/pii/S0304380006003140}, - number = {1–2}, - doi = {10.1016/j.ecolmodel.2006.07.005} -} - -@Article{bafford1993intracellular, - title = {Intracellular Localization of the Taste/Odor Metabolite 2-methylisoborneol in {{\textit{Oscillatoria limosa}}} (Cyanophyta)1}, - author = {Bafford, Richard A. and Seagull, Robert W. and Chung, Si-Yin and Millie, David F.}, - year = 1993, - journal = {Journal of Phycology}, - volume = 29, - pages = {91--95}, - url = {https://onlinelibrary.wiley.com/doi/abs/10.1111/j.1529-8817.1993.tb00285.x}, - number = 1, - doi = {10.1111/j.1529-8817.1993.tb00285.x}, - eprint = {https://onlinelibrary.wiley.com/doi/pdf/10.1111/j.1529-8817.1993.tb00285.x} -} - -@Article{bahnwart1998downstream, - title = {Downstream Changes in Phytoplankton Composition and Biomass in A Lowland River--lake System (Warnow River, Germany)}, - author = {Bahnwart, Mandy and Hübener, Thomas and Schubert, Hendrik}, - year = 1998, - journal = {Hydrobiologia}, - volume = 391, - pages = {99--111}, - url = {http://dx.doi.org/10.1023/A:1003558209411}, - number = 1, - doi = {10.1023/A:1003558209411} -} - -@Article{bai2006tai, - title = {太湖水深变化对氮磷浓度和叶绿素a浓度的影响}, - author = {白晓华 and 胡维平}, - year = 2006, - journal = {水科学进展}, - volume = 17, - pages = {727--732}, - number = 5, - language = {Zh} -} - -@Article{bai2017occurrence, - title = {Occurrence and Distribution of Taste and Odor Compounds in Subtropical Water Supply Reservoirs and Their Fates in Water Treatment Plants}, - author = {Bai, Xiuzhi and Zhang, Ting and Wang, Chaoyi and Zong, Dongliang and Li, Haipu and Yang, Zhaoguang}, - year = 2017, - month = {Jan}, - journal = {Environmental Science and Pollution Research}, - volume = 24, - pages = {2904--2913}, - url = {https://doi.org/10.1007/s11356-016-7966-5}, - number = 3, - doi = {10.1007/s11356-016-7966-5} -} - -@Article{baker2001preliminary, - title = {Preliminary Evidence of Toxicity Associated With the Benthic Cyanobacterium Phormidium in South Australia}, - author = {Baker, Peter D. and Steffensen, Dennis A. and Humpage, Andrew R. and Nicholson, Brenton C. and Falconer, Ian R. and Lanthois, Ben and Fergusson, Kim M. and Saint, Christopher P.}, - year = 2001, - journal = {Environmental Toxicology}, - volume = 16, - pages = {506--511}, - url = {https://onlinelibrary.wiley.com/doi/abs/10.1002/tox.10009}, - number = 6, - doi = {10.1002/tox.10009}, - eprint = {https://onlinelibrary.wiley.com/doi/pdf/10.1002/tox.10009} -} - -@Article{baker2003determination, - title = {Determination of Pyrazine and Flavor Variations in Peanut Genotypes During Roasting}, - author = {Baker, G.L. and Cornell, J.A. and Gorbet, D.W. and O'Keefe, S.F. and Sims, C.A. and Talcott, S.T.}, - year = 2003, - journal = {Journal of Food Science}, - publisher = {Blackwell Publishing Ltd}, - volume = 68, - pages = {394--400}, - url = {http://dx.doi.org/10.1111/j.1365-2621.2003.tb14171.x}, - number = 1, - doi = {10.1111/j.1365-2621.2003.tb14171.x} -} - -@Article{bakker2012water, - title = {Water Security: Research Challenges and Opportunities}, - author = {Bakker, Karen}, - year = 2012, - journal = {Science}, - volume = 337, - pages = {914--915}, - url = {http://www.sciencemag.org/content/337/6097/914.short}, - number = 6097, - doi = {10.1126/science.1226337} -} - -@Article{barone2010red, - title = {Red Sky At Night Cyanobacteria Delight: the Role of Climate in Structuring Phytoplankton Assemblage in A Shallow, Mediterranean Lake ({Biviere Di Gela, Southeastern Sicily})}, - author = {Barone, Rossella and Castelli, Giuseppe and Naselli-Flores, Luigi}, - year = 2010, - journal = {Hydrobiologia}, - publisher = {Springer Netherlands}, - volume = 639, - pages = {43--53}, - url = {http://dx.doi.org/10.1007/s10750-009-0016-2}, - language = {English}, - doi = {10.1007/s10750-009-0016-2} -} - -@Article{barrett1999long, - title = {Long-term Algal Control in A Reservoir Using Barley Straw}, - author = {Barrett, P.R.F. and Littlejohn, J.W. and Curnow, J.}, - year = 1999, - journal = {Hydrobiologia}, - publisher = {Kluwer Academic Publishers}, - volume = 415, - pages = {309--313}, - url = {http://dx.doi.org/10.1023/A%3A1003829318450}, - number = 0, - doi = {10.1023/A:1003829318450}, - language = {English} -} - -@Article{barrington2008application, - title = {Application of {{Hydrogen Peroxide}} for the {{Removal}} of {{Toxic Cyanobacteria}} and {{Other Phytoplankton}} From {{Wastewater}}}, - author = {Barrington, Dani J. and Ghadouani, Anas}, - year = 2008, - month = dec, - journal = {Environmental Science \& Technology}, - volume = 42, - pages = {8916--8921}, - language = {En}, - number = 23, - doi = {10.1021/es801717y} -} - -@Book{barsanti2005algae, - title = {Algae: Anatomy, Biochemistry, and Biotechnology}, - author = {Barsanti, Laura and Gualtieri, Paolo}, - year = 2005, - publisher = {CRC} -} - -@Book{bartels1996introduction, - title = {An Introduction to Splines for Use in Computer Graphics and Geometric Modeling}, - author = {Richard Bartels and John Beatty and Brian Barsky}, - year = 1996, - publisher = {Morgan Kaufmann}, - pages = {1--476} -} - -@InCollection{bartram1999situation, - title = {Situation Assessment, Planning and Management}, - booktitle = {Toxic Cyanobacteria in Water: A guide to their public health consequences, monitoring and management}, - author = {Chorus, Edited Ingrid and Bartram, Jamie and Burch, Mike and Falconer, Ian R and Jones, Gary and Kuiper-goodman, Tine}, - year = {1999}, - publisher = {Citeseer} -} - -@Book{bartram1999toxic, - title = {Toxic Cyanobacteria in Water: A Guide to Their Public Health Consequences, Monitoring and Management}, - author = {Bartram, Jamie and Chorus, Ingrid}, - year = 1999, - publisher = {CRC Press} -} - -@Article{battocchi2010monitoring, - title = {Monitoring Toxic Microalgae Ostreopsis (dinoflagellate) Species in Coastal Waters of the Mediterranean Sea Using Molecular PCR-based Assay Combined With Light Microscopy}, - author = {Cecilia Battocchi and Cecilia Totti and Magda Vila and Mercedes Masó and Samuela Capellacci and Stefano Accoroni and Albert Reñé and Michele Scardi and Antonella Penna}, - year = 2010, - journal = {Marine Pollution Bulletin}, - volume = 60, - pages = {1074--1084}, - url = {http://www.sciencedirect.com/science/article/pii/S0025326X10000354}, - number = 7, - doi = {10.1016/j.marpolbul.2010.01.017} -} - -@Article{bauman2012multiple, - title = {Multiple Environmental Factors Influence the Spatial Distribution and Structure of Reef Communities in the Northeastern Arabian Peninsula}, - author = {Andrew G. Bauman and David A. Feary and Scott F. Heron and Morgan S. Pratchett and John A. Burt}, - year = 2012, - journal = {Marine Pollution Bulletin}, - pages = {-}, - url = {http://www.sciencedirect.com/science/article/pii/S0025326X12005036}, - number = 0, - doi = {10.1016/j.marpolbul.2012.10.013} -} - -@Article{bechard1979volatile, - title = {VOLATILE ORGANIC SULFIDES FROM FRESHWATER ALGAE1}, - author = {Bechard, Marc J. and Rayburn, William R.}, - year = 1979, - journal = {Journal of Phycology}, - volume = 15, - pages = {379--383}, - url = {https://onlinelibrary.wiley.com/doi/abs/10.1111/j.1529-8817.1979.tb00708.x}, - number = 4, - doi = {10.1111/j.1529-8817.1979.tb00708.x}, - eprint = {https://onlinelibrary.wiley.com/doi/pdf/10.1111/j.1529-8817.1979.tb00708.x} -} - -@Article{becker2009occurrence, - title = {Occurrence of Anatoxin-a(s) During A Bloom of {{\textit{Anabaena Crassa}}} in A Water-supply Reservoir in Southern Brazil}, - author = {Becker, Vanessa and Ihara, Priscila and Yunes, Joao Sarkis}, - year = 2009, - journal = {Journal of Applied Phycology}, - volume = 22, - pages = {235--241}, - number = 3 -} - -@Article{becker2009responses, - title = {Responses of Phytoplankton Functional Groups to the Mixing Regime in A Deep Subtropical Reservoir}, - author = {Becker, Vanessa and Huszar, VeraLúciaM. and Crossetti, LucianeO.}, - year = 2009, - journal = {Hydrobiologia}, - publisher = {Springer Netherlands}, - volume = 628, - pages = {137--151}, - url = {http://dx.doi.org/10.1007/s10750-009-9751-7}, - number = 1, - doi = {10.1007/s10750-009-9751-7}, - language = {English} -} - -@Article{beer1986photosynthesis, - title = {Photosynthesis and Growth of the Filamentous Blue-green-alga {{\textit{Lyngbya birgei}}} in Relation to Its Environment}, - author = {Beer, S and Spencer, W and Bowes, G}, - type = {Article}, - year = 1986, - month = {JUL}, - journal = {Journal of Aquatic Plant Management}, - publisher = {AQUATIC PLANT MANAGEMENT SOC, INC}, - volume = 24, - pages = {61--65}, - language = {English}, - address = {PO BOX 121086, CLERMONT, FL 34712-1086}, - affiliation = {BEER, S (Reprint Author), TEL AVIV UNIV,DEPT BOT,IL-69978 TEL AVIV,ISRAEL.. UNIV FLORIDA,DEPT BOT,GAINESVILLE,FL 32611.} -} - -@Article{behets2007duplex, - title = {A Duplex {Real-time PCR} Assay for the Quantitative Detection of {{\textit{Naegleria fowleri}}} in Water Samples}, - author = {Jonas Behets and Priscilla Declerck and Yasmine Delaedt and Lieve Verelst and Frans Ollevier}, - year = 2007, - journal = {Water Research}, - volume = 41, - pages = {118--126}, - url = {http://www.sciencedirect.com/science/article/pii/S0043135406005598}, - number = 1, - doi = {10.1016/j.watres.2006.10.003} -} - -@Article{bekkby2011developing, - title = {Developing Spatial Models of Sugar Kelp (Saccharina Latissima) Potential Distribution Under Natural Conditions and Areas of Its Disappearance in Skagerrak}, - author = {Trine Bekkby and Frithjof E. Moy}, - year = 2011, - journal = {Estuarine, Coastal and Shelf Science}, - volume = 95, - pages = {477--483}, - url = {http://www.sciencedirect.com/science/article/pii/S0272771411004513}, - number = 4, - doi = {10.1016/j.ecss.2011.10.029} -} - -@Article{bellec2010abundance, - title = {Abundance, Spatial Distribution and Genetic Diversity of {{\textit{Ostreococcus tauri}}} Viruses in Two Different Environments}, - author = {Bellec, Laure and Grimsley, Nigel and Derelle, Evelyne and Moreau, Herv{\'e} and Desdevises, Yves}, - year = 2010, - journal = {Environmental Microbiology Reports}, - publisher = {Blackwell Publishing Ltd}, - volume = 2, - pages = {313--321}, - url = {http://dx.doi.org/10.1111/j.1758-2229.2010.00138.x}, - number = 2, - doi = {10.1111/j.1758-2229.2010.00138.x} -} - -@Article{bellinger1974key, - title = {A Key to the Identification of the More Common Algae Found in British Freshwaters}, - author = {Bellinger,E. G.}, - year = 1974, - journal = {Water Treatment and Examination}, - volume = 23, - pages = {76--131} -} - -@Book{bellinger2011freshwater, - title = {Freshwater Algae: Identification and Use As Bioindicators}, - author = {Bellinger, Edward G and Sigee, David C}, - year = 2011, - publisher = {Wiley} -} - -@Article{beninca2008chaos, - title = {Chaos in A Long-term Experiment With A Plankton Community}, - author = {Elisa Beninc{\`a} and Jef Huisman and Reinhard Heerkloss and Klaus D. J{\"o}hnk and Pedro Branco and Egbert H. Van Nes and Marten Scheffer and Stephen P. Ellner}, - year = 2008, - journal = {Nature}, - publisher = {Nature Publishing Group}, - volume = 451, - pages = {822--825}, - url = {http://dx.doi.org/10.1038/nature06512}, - number = 7180, - doi = {10.1038/nature06512} -} - -@Article{beninca2011resonance, - title = {Resonance of Plankton Communities With Temperature Fluctuations.}, - author = {Beninc{\`a}, Elisa and Dakos, Vasilis and Nes, Egbert H. Van and Huisman,, Jef and Scheffer, Marten}, - year = 2011, - journal = {The American Naturalist}, - publisher = {The University of Chicago Press for the American Society of Naturalists}, - volume = 178, - pages = {Pp. E85-E95}, - url = {http://www.jstor.org/stable/10.1086/661902}, - number = 4, - language = {English} -} - -@Article{bentley1981geosmin, - title = {Geosmin and Methylisoborneol Biosynthesis in Streptomycetes. Evidence for An Isoprenoid Pathway and Its Absence in Non-differentiating Isolates.}, - author = {Bentley, Ronald and Meganathan, R}, - year = 1981, - journal = {FEBS Letters}, - volume = 125, - pages = 220, - number = 2 -} - -@Article{berard1999tolerance, - title = {Tolerance of {{\textit{Oscillatoria limnetica}}} Lemmermann to Atrazine in Natural Phytoplankton Populations and in Pure Culture: Influence of Season and Temperature}, - author = {B{\'e}rard, A. and Leboulanger, C. and Pelte, T.}, - year = 1999, - journal = {Archives of Environmental Contamination and Toxicology}, - publisher = {Springer-Verlag}, - volume = 37, - pages = {472--479}, - url = {http://dx.doi.org/10.1007/s002449900541}, - language = {English}, - doi = {10.1007/s002449900541} -} - -@Article{berdjeb2011bottom, - title = {Bottom-Up Versus Top-Down Control of Hypo- and Epilimnion Free-Living Bacterial Community Structures in Two Neighboring Freshwater Lakes}, - author = {Berdjeb, Lyria and Ghiglione, Jean-Fran{\cc}ois and Jacquet, St{\'e}phan}, - year = 2011, - journal = {Applied and Environmental Microbiology}, - volume = 77, - pages = {3591--3599}, - url = {http://aem.asm.org/content/77/11/3591.abstract}, - number = 11, - doi = {10.1128/AEM.02739-10} -} - -@Article{berger1988ijsselmeer, - title = {The IJsselmeer and Its Phytoplankton-with Special Attention to the Suitability of the Lake As A Habitat for {{\textit{Oscillatoria agardhii}}} Gom}, - author = {Berger, C. and Sweers, H.E.}, - year = 1988, - journal = {Journal of Plankton Research}, - volume = 10, - pages = {579--599}, - url = {http://plankt.oxfordjournals.org/content/10/4/579.abstract}, - number = 4, - doi = {10.1093/plankt/10.4.579}, - eprint = {http://plankt.oxfordjournals.org/content/10/4/579.full.pdf+html} -} - -@Article{berger1989situ, - title = {In Situ Primary Production, Biomass and Light Regime in the Wolderwijd, the Most Stable {{\textit{Oscillatoria agardhii}}} Lake in the Netherlands}, - author = {Berger, C.}, - year = 1989, - journal = {Hydrobiologia}, - publisher = {Kluwer Academic Publishers}, - volume = 185, - pages = {233--244}, - url = {http://dx.doi.org/10.1007/BF00036611}, - language = {English}, - doi = {10.1007/BF00036611} -} - -@Article{berglind1983case, - title = {Case Studies on Off-Flavours in Some Norwegian Lakes}, - author = {Berglind, L and Holtan, H and Skulberg, O M}, - year = 1983, - journal = {Water Science and Technology}, - publisher = {IWA Publishing}, - volume = 15, - pages = {199--209}, - url = {http://wst.iwaponline.com/content/15/6-7/199}, - doi = {10.2166/wst.1983.0144}, - number = {6-7} -} - -@Article{berglind1983oscillatoria, - title = {{\textit{Oscillatoria brevis}} (Kutz.) Gom. and Some Other Especially Odouriferous Benthic Cyanophytes in Norwegian Inland Waters}, - author = {Berglind, L and Johnsen, I J and Ormerod, K and Skulberg, O M}, - year = 1983, - month = 06, - journal = {Water Science and Technology}, - volume = 15, - pages = {241--246}, - url = {https://doi.org/10.2166/wst.1983.0148}, - number = {6-7}, - doi = {10.2166/wst.1983.0148} -} - -@Article{bergsland1991evolutionary, - title = {Evolutionary Relationships Among Eubacteria, Cyanobacteria, and Chloroplasts: Evidence From the $rpoC_1$ Gene of {{\textit{Anabaena}}} sp. {Strain PCC 7120}.}, - author = {Bergsland, K J and Haselkorn, R}, - year = 1991, - journal = {Journal of Bacteriology}, - volume = 173, - pages = {3446--3455}, - url = {http://jb.asm.org/content/173/11/3446.abstract}, - number = 11 -} - -@Article{berman1998phytoplankton, - title = {Phytoplankton Development and Turbulent Mixing in {Lake Kinneret} (1992?1996)}, - author = {Berman, Tom and Shteinman, Boris}, - year = 1998, - journal = {Journal of Plankton Research}, - volume = 20, - pages = {709--726}, - url = {http://plankt.oxfordjournals.org/content/20/4/709.abstract}, - number = 4, - doi = {10.1093/plankt/20.4.709}, - eprint = {http://plankt.oxfordjournals.org/content/20/4/709.full.pdf+html} -} - -@Article{bernard2004disaggregation, - title = {Disaggregation of Colonies of {{\textit{Microcystis}}} (Cyanobacteria): Efficiency of Two Techniques Assessed Using An Image Analysis System}, - author = {Bernard, Catherine and Monis, Paul and Baker, Peter}, - year = 2004, - journal = {Journal of Applied Phycology}, - publisher = {Kluwer Academic Publishers}, - volume = 16, - pages = {117--125}, - url = {http://dx.doi.org/10.1023/B%3AJAPH.0000044774.38561.44}, - number = 2, - doi = {10.1023/B:JAPH.0000044774.38561.44}, - language = {English} -} - -@Article{bio1998determining, - title = {Determining Alternative Models for Vegetation Response Analysis: A Non-Parametric Approach}, - author = {A. M. F. Bio and R. Alkemade and A. Barendregt}, - year = 1998, - journal = {Journal of Vegetation Science}, - publisher = {Wiley}, - volume = 9, - pages = {5--16}, - url = {http://www.jstor.org/stable/3237218}, - number = 1 -} - -@Article{birch1953experimental, - title = {Experimental Background to the Study of the Distribution and Abundance of Insects: I. the Influence of Temperature, Moisture and Food on the Innate Capacity for Increase of Three Grain Beetles}, - author = {Birch, L. C.}, - year = 1953, - month = {Oct}, - journal = {Ecology}, - publisher = {Ecological Society of America}, - volume = 34, - pages = {698--711}, - url = {http://dx.doi.org/10.2307/1931333}, - number = 4, - doi = {10.2307/1931333} -} - -@Article{bishop2017copper, - title = {Copper-Based Aquatic Algaecide Adsorption and Accumulation Kinetics: Influence of Exposure Concentration and Duration for Controlling the Cyanobacterium Lyngbya Wollei}, - author = {Bishop, West M. and Lynch, Clayton L. and Willis, Ben E. and Cope, W. Gregory}, - year = 2017, - month = {Sep}, - journal = {Bulletin of Environmental Contamination and Toxicology}, - volume = 99, - pages = {365--371}, - url = {https://doi.org/10.1007/s00128-017-2134-2}, - number = 3, - doi = {10.1007/s00128-017-2134-2} -} - -@Book{bivand2008applied, - title = {Applied Spatial Data Analysis With R}, - author = {Bivand, Roger S and Pebesma, Edzer J and G{\'o}mez-Rubio, Virgilio}, - year = 2008, - publisher = {Springer}, - volume = 747248717 -} - -@MastersThesis{bo2018shui, - title = {水库水体嗅味物质MIB和gsm的调查与分析}, - author = {卜思瑶}, - school = {大连理工大学}, - year = 2018 -} - -@Article{bode2008identification, - title = {Identification of Additional Players in the Alternative Biosynthesis Pathway to Isovaleryl-coa in the Myxobacterium Myxococcus Xanthus}, - author = {Bode, Helge B. and Ring, Michael W. and Schwär, Gertrud and Altmeyer, Matthias O. and Kegler, Carsten and Jose, Ivy R. and Singer, Mitchell and Müller, Rolf}, - year = 2009, - journal = {Chembiochem}, - volume = 10, - pages = {128--140}, - url = {https://onlinelibrary.wiley.com/doi/abs/10.1002/cbic.200800219}, - number = 1, - doi = {10.1002/cbic.200800219}, - eprint = {https://onlinelibrary.wiley.com/doi/pdf/10.1002/cbic.200800219} -} - -@Article{boehrer2008stratification, - title = {Stratification of Lakes}, - author = {Boehrer, Bertram and Schultze, Martin}, - type = {Review}, - year = 2008, - journal = {Reviews of Geophysics}, - publisher = {Amer Geophysical Union}, - volume = 46, - language = {English}, - number = 2, - doi = {10.1029/2006rg000210} -} - -@Article{bonilla2012what, - title = {What Drives the Distribution of the Bloom-forming Cyanobacteria {{\textit{Planktothrix agardhii}}} and {{\textit{Cylindrospermopsis Raciborskii}}}?}, - author = {Bonilla, Sylvia and Aubriot, Luis and Soares, Maria Carolina S. and Gonz{\'a}lez-piana, Mauricio and Fabre, Amelia and Huszar, Vera L.m. and Lürling, Miquel and Antoniades, Dermot and Padis{\'a}k, Judit and Kruk, Carla}, - year = 2012, - journal = {Fems Microbiology Ecology}, - volume = 79, - pages = {594--607}, - url = {http://dx.doi.org/10.1111/j.1574-6941.2011.01242.x}, - number = 3, - doi = {10.1111/j.1574-6941.2011.01242.x} -} - -@Article{borcard2002all, - title = {All-scale Spatial Analysis of Ecological Data by Means of Principal Coordinates of Neighbour Matrices}, - author = {Daniel Borcard and Pierre Legendre}, - year = 2002, - journal = {Ecological Modelling}, - volume = 153, - pages = {51--68}, - url = {http://www.sciencedirect.com/science/article/pii/s0304380001005014}, - number = {1–2}, - doi = {10.1016/s0304-3800(01)00501-4} -} - -@Book{borcard2011numerical, - title = {Numerical Ecology With R}, - author = {Borcard, Daniel and Gillet, Fran{\c{c}}ois and Legendre, Pierre}, - year = 2011, - publisher = {Springer} -} - -@Article{borkman1998long, - title = {Long-term Trends in Water Clarity Revealed by Secchi-disk Measurements in Lower Narragansett Bay}, - author = {Borkman, David G. and Smayda, Theodore J.}, - year = 1998, - journal = {Ices Journal of Marine Science: Journal Du Conseil}, - volume = 55, - pages = {668--679}, - url = {http://icesjms.oxfordjournals.org/content/55/4/668.abstract}, - number = 4, - doi = {10.1006/jmsc.1998.0380}, - eprint = {http://icesjms.oxfordjournals.org/content/55/4/668.full.pdf+html} -} - -@Book{botana2008phycotoxins, - title = {Phycotoxins: Chemistry and Biochemistry}, - author = {Botana, Luis M}, - year = 2008, - publisher = {Wiley-blackwell} -} - -@Article{bouaicha2004first, - title = {First Report of Cyanobacterium Cylindrospermopsis Raciborskii From Algerian Freshwaters}, - author = {Boua{\"i}cha, Noureddine and Nasri, A{\"i}cha-beya}, - year = 2004, - journal = {Environmental Toxicology}, - publisher = {Wiley Subscription Services, Inc., A Wiley Company}, - volume = 19, - pages = {541--543}, - url = {http://dx.doi.org/10.1002/tox.20058}, - number = 5, - doi = {10.1002/tox.20058} -} - -@Article{bouvy1999dynamics, - title = {Dynamics of A Toxic Cyanobacterial Bloom ({\textit{Cylindrospermopsis Raciborskii}}) in A Shallow Reservoir in the Semi-arid Region of Northeast Brazil}, - author = {Bouvy, Marc and Molica, Renato and De Oliveira, Simone and Marinho, Mauro and Beker, Beatriz}, - year = 1999, - journal = {Aquatic Microbial Ecology}, - volume = 20, - pages = {285--297}, - number = 3 -} - -@Article{bowmer1992physiology, - title = {Physiology of Geosmin Production by {{\textit{Anabaena Circinalis}}} Isolated From the Murrumbidgee River, Australia}, - author = {Bowmer, K. H. and Padovan, A. and Oliver, R. L. and Korth, W. and Ganf, G. G.}, - year = 1992, - month = 01, - journal = {Water Science and Technology}, - volume = 25, - pages = {259--267}, - url = {https://doi.org/10.2166/wst.1992.0060}, - number = 2, - doi = {10.2166/wst.1992.0060} -} - -@Article{brasil2016drought, - title = {Drought-induced Water-level Reduction Favors Cyanobacteria Blooms in Tropical Shallow Lakes}, - author = {Brasil, Jandeson and Attayde, Jos{\'e} L. and Vasconcelos, Francisco R. and Dantas, Danyhelton D. F. and Huszar, Vera L. M.}, - year = 2016, - journal = {Hydrobiologia}, - volume = 770, - pages = {145--164}, - url = {http://dx.doi.org/10.1007/s10750-015-2578-5}, - number = 1, - doi = {10.1007/s10750-015-2578-5} -} - -@Article{brauer2012nutrient, - title = {The Nutrient-lgad Hypothesis: Patterns of Resource Limitation and Community Structure Driven by Competition for Nutrients and Light}, - author = {Brauer, Verena S and Stomp, Maayke and Huisman, Jef}, - year = 2012, - journal = {The American Naturalist}, - publisher = {University of Chicago Press}, - volume = 179, - pages = {721--740}, - url = {http://www.jstor.org/stable/10.1086/665650}, - number = 6 -} - -@Article{brettum1996changes, - title = {Changes in the Volume and Composition of Phytoplankton After Experimental Acidification of A Humic Lake}, - author = {P?l Brettum}, - year = 1996, - journal = {Environment International}, - volume = 22, - pages = {619--628}, - url = {http://www.sciencedirect.com/science/article/pii/0160412096000372}, - number = 5, - note = {the Humex/humor Project and Humic Substances}, - doi = {10.1016/0160-4120(96)00037-2} -} - -@Article{briand2002environmental, - title = {Environmental Context of {{\textit{Cylindrospermopsis Raciborskii}}} (cyanobacteria) Blooms in A Shallow Pond in France}, - author = {J.f Briand and C Robillot and C Quiblier-llob\'{e}ras and J.f Humbert and A Cout\'{e} and C Bernard}, - year = 2002, - journal = {Water Research}, - volume = 36, - pages = {3183--3192}, - url = {http://www.sciencedirect.com/science/article/pii/s0043135402000167}, - number = 13, - doi = {10.1016/s0043-1354(02)00016-7} -} - -@InProceedings{briggs1980blue, - title = {Blue Light Responses in the Siphonaceous Alga Vaucheria}, - author = {Briggs, W. R. and Blatt, M. R.}, - year = 1980, - booktitle = {The Blue Light Syndrome}, - publisher = {Springer Berlin Heidelberg}, - pages = {261--268}, - address = {Berlin, Heidelberg}, - isbn = {978-3-642-67648-2} -} - -@Article{bright2000daily, - title = {The Daily Integral of Growth by {{\textit{Planktothrix rubescens}}} Calculated From Growth Rate in Culture and Irradiance in {Lake Zürich}}, - author = {Bright, Dylan I. and Walsby, Anthony E.}, - year = 2000, - journal = {New Phytologist}, - publisher = {Wiley on Behalf of the New Phytologist Trust}, - volume = 146, - pages = {Pp. 301--316}, - url = {http://www.jstor.org/stable/2588979}, - number = 2, - language = {English} -} - -@Book{bronmark2005biology, - title = {The Biology of Lakes and Ponds}, - author = {Br{\"o}nmark, Christer and Hansson, Lars-anders}, - year = 2005, - publisher = {Oxford University Press New York, Ny, {USA}} -} - -@Article{brookes1994separation, - title = {Separation of Forms of {{\textit{Microcystis}}} From {{\textit{Anabaena}}} in Mixed Populations by the Application of Pressure}, - author = {Brookes, J. and Ganf, G. and Burch, M.}, - year = 1994, - journal = {Australian Journal of Marine and Freshwater Research}, - volume = 45, - pages = {863--868}, - number = 5, - doi = {10.1071/mf9940863} -} - -@Article{brookes2001variations, - title = {Variations in the Buoyancy Response of {{\textit{Microcystis aeruginosa}}} to Nitrogen, Phosphorus and Light}, - author = {Brookes, Justin D. and Ganf, George G.}, - year = 2001, - journal = {Journal of Plankton Research}, - volume = 23, - pages = {1399--1411}, - url = {http://plankt.oxfordjournals.org/content/23/12/1399.abstract}, - number = 12, - doi = {10.1093/plankt/23.12.1399}, - eprint = {http://plankt.oxfordjournals.org/content/23/12/1399.full.pdf+html} -} - -@Book{brookes2008practical, - title = {A Practical Guide to Reservoir Management}, - author = {Justin Brookes and Michael Burch and Matthew Hipsey and Leon Linden and Jason Antenucci and Dennis Steffensen and Peter Hobson and Olivia Thorne and David Lewis and Stephanie Rinck-pfeiffer and Uwe Kaeding and Paul Ramussen}, - year = 2008, - publisher = {Water Quality Research Australia} -} - -@Article{brookes2011resilience, - title = {Resilience to Blooms}, - author = {Brookes, Justin D. and Carey, Cayelan C.}, - year = 2011, - journal = {Science}, - volume = 334, - pages = {46--47}, - url = {http://www.sciencemag.org/content/334/6052/46.short}, - number = 6052, - doi = {10.1126/science.1207349} -} - -@Article{brooks1999influence, - title = {The Influence of Light and Nutrients on Buoyancy, Filament Aggregation and Flotation of {{\textit{Anabaena circinalis}}}}, - author = {Justin D. Brookes and George G. Ganf and Damian Green and John Whittington}, - year = 1999, - month = 02, - journal = {Journal of Plankton Research}, - volume = 21, - pages = {327--341}, - url = {https://doi.org/10.1093/plankt/21.2.327}, - number = 2, - doi = {10.1093/plankt/21.2.327} -} - -@Article{brown1984relationships, - title = {Relationships Between Suspended Solids, Turbidity, Light Attenuation, and Algal Productivity}, - author = {Russ Brown}, - year = 1984, - journal = {Lake and Reservoir Management}, - publisher = {Taylor \& Francis}, - volume = 1, - pages = {198--205}, - url = {https://doi.org/10.1080/07438148409354510}, - number = 1, - doi = {10.1080/07438148409354510}, - eprint = {https://doi.org/10.1080/07438148409354510} -} - -@Article{brown1989computer, - title = {Computer-based Image Analysis for the Automated Counting and Morphological Description of Microalgae in Culture}, - author = {Brown, Lewism. and Gargantini, Irene and Brown, D.james and Atkinson, Harveyj. and Govindarajan, J. and Vanlerberghe, Gregoryc.}, - year = 1989, - journal = {Journal of Applied Phycology}, - publisher = {Kluwer Academic Publishers}, - volume = 1, - pages = {211--225}, - url = {http://dx.doi.org/10.1007/bf00003647}, - number = 3, - doi = {10.1007/bf00003647}, - language = {English} -} - -@Article{brown1998seasonal, - title = {Seasonal Patterns of Chlorophyll, Nutrient Concentrations and Secchi Disk Transparency in Florida Lakes}, - author = {Claude D. Brown and Daniel E. Canfield Jr. and Roger W. Bachmann and Mark V. Hoyer}, - year = 1998, - journal = {Lake and Reservoir Management}, - volume = 14, - pages = {60--76}, - url = {http://dx.doi.org/10.1080/07438149809354110}, - number = 1, - doi = {10.1080/07438149809354110}, - eprint = {http://dx.doi.org/10.1080/07438149809354110} -} - -@Article{brown2001nutrient, - title = {Nutrient-chlorophyll Relationships: An Evaluation of Empirical Nutrient-chlorophyll Models Using Florida and North-temperate Lake Data}, - author = {Brown, Claude D and Hoyer, Mark V and Bachmann, Roger W and Canfield Jr, Daniel E}, - year = 2000, - journal = {Canadian Journal of Fisheries and Aquatic Sciences}, - volume = 57, - pages = {1574--1583}, - url = {https://doi.org/10.1139/f00-090}, - number = 8, - doi = {10.1139/f00-090}, - eprint = {https://doi.org/10.1139/f00-090} -} - -@Article{bruce2002removal, - title = {{removal of 2-methylisoborneol and Geosmin in Surface Water Treatment Plants in Arizona}}, - author = {Bruce, Darlene and Westerhoff, Paul and Brawley-chesworth, Alice}, - year = 2002, - month = 06, - journal = {Journal of Water Supply: Research and Technology-aqua}, - volume = 51, - pages = {183--198}, - url = {https://doi.org/10.2166/aqua.2002.0016}, - number = 4, - doi = {10.2166/aqua.2002.0016} -} - -@Article{bruchet1999solved, - title = {Solved and Unsolved Cases of Taste and Odor Episodes in the Files of Inspector Cluzeau}, - author = {A. Bruchet}, - year = 1999, - journal = {Water Science and Technology}, - volume = 40, - pages = {15--21}, - url = {http://www.sciencedirect.com/science/article/pii/s0273122399005326}, - number = 6, - doi = {10.2166/wst.1999.0250} -} - -@Article{bruder2014use, - title = {Use of Fuzzy Logic Models for Prediction of Taste and Odor Compounds in Algal Bloom-affected Inland Water Bodies}, - author = {Bruder, Slawa and Babbar-sebens, Meghna and Tedesco, Lenore and Soyeux, Emmanuel}, - year = 2014, - journal = {Environmental Monitoring and Assessment}, - publisher = {Springer International Publishing}, - volume = 186, - pages = {1525--1545}, - url = {http://dx.doi.org/10.1007/s10661-013-3471-1}, - number = 3, - doi = {10.1007/s10661-013-3471-1}, - language = {English} -} - -@Article{bruggeman2007biodiversity, - title = {A Biodiversity-inspired Approach to Aquatic Ecosystem Modeling}, - author = {Bruggeman, Jorn and Kooijman, Sebastiaan A. L. M.}, - year = 2007, - month = {Jul}, - journal = {Limnology and Oceanography}, - publisher = {Amer Soc Limnology Oceanography}, - volume = 52, - pages = {1533--1544}, - number = 4, - doi = {10.4319/lo.2007.52.4.1533} -} - -@Article{bruno1994anatoxin, - title = {Anatoxin-a and A Previously Unknown Toxin in {{\textit{Anabaena Planctonica}}} From Blooms Found in {Lake Mulargia} ({Italy})}, - author = {Milena Bruno and Danilo Attard Barbini and Elio Pierdominici and Anna Paola Serse and Alfredo Ioppolo}, - year = 1994, - journal = {Toxicon}, - volume = 32, - pages = {369--373}, - url = {http://www.sciencedirect.com/science/article/pii/0041010194900892}, - number = 3, - doi = {10.1016/0041-0101(94)90089-2} -} - -@Article{bryan2013variation, - title = {Variation in Chlorophyll A to Total Phosphorus Ratio Across 94 Uk and Irish Lakes: Implications for Lake Management}, - author = {Bryan M. Spears and Laurence Carvalho and Bernard Dudley and Linda May}, - year = 2013, - journal = {Journal of Environmental Management}, - volume = 115, - pages = {287--294}, - url = {http://www.sciencedirect.com/science/article/pii/s0301479712005154}, - number = {Supplement C}, - doi = {10.1016/j.jenvman.2012.10.011} -} - -@Article{bunn2002basic, - title = {Basic Principles and Ecological Consequences of Altered Flow Regimes for Aquatic Biodiversity}, - author = {Bunn, Stuart E. and Arthington, Angela H.}, - year = 2002, - journal = {Environmental Management}, - publisher = {Springer-verlag}, - volume = 30, - pages = {492--507}, - url = {http://dx.doi.org/10.1007/s00267-002-2737-0}, - number = 4, - doi = {10.1007/s00267-002-2737-0}, - language = {English} -} - -@Article{buratti2017cyanotoxins, - title = {Cyanotoxins: Producing Organisms, Occurrence, Toxicity, Mechanism of Action and Human Health Toxicological Risk Evaluation}, - author = {Buratti, Franca M. and Manganelli, Maura and Vichi, Susanna and Stefanelli, Mara and Scardala, Simona and Testai, Emanuela and Funari, Enzo}, - year = 2017, - month = {Mar}, - journal = {Archives of Toxicology}, - volume = 91, - pages = {1049--1130}, - url = {https://doi.org/10.1007/s00204-016-1913-6}, - number = 3, - doi = {10.1007/s00204-016-1913-6} -} - -@Article{butakova2013specific, - title = {Specific Features of Odor-causing Compounds (geosmin and 2-methylisoborneol) As Secondary Metabolites of Cyanobacteria}, - author = {Butakova, E.a.}, - year = 2013, - journal = {Russian Journal of Plant Physiology}, - publisher = {Sp Maik Nauka/interperiodica}, - volume = 60, - pages = {507--510}, - url = {http://dx.doi.org/10.1134/s102144371304002x}, - number = 4, - doi = {10.1134/s102144371304002x}, - language = {English} -} - -@Article{cai2006yang, - title = {洋河水库污染源调查与分析}, - author = {蔡金傍 and 李文奇 and 刘娜等}, - year = 2006, - journal = {中国农村水利水电}, - volume = 2006, - pages = {51--56}, - number = 09, - language = {Zh} -} - -@PhDThesis{cai2019zhong, - title = {中国念珠藻类(Nostoc-like)蓝藻的分类与系统发育研究}, - author = {蔡芳芳 and 李仁辉}, - school = {中国科学院大学}, - year = 2019 -} - -@Article{campbell1987relationship, - title = {The Relationship Between Light Attenuation and Particle Characteristics in A Turbid Estuary}, - author = {Daniel E. Campbell and Richard W. Spinrad}, - year = 1987, - journal = {Estuarine, Coastal and Shelf Science}, - volume = 25, - pages = {53--65}, - url = {http://www.sciencedirect.com/science/article/pii/0272771487900254}, - number = 1, - doi = {10.1016/0272-7714(87)90025-4} -} - -@Article{candy2004modelling, - title = {Modelling Catch and Effort Data Using Generalised Linear Models, the Tweedie Distribution, Random Vessel Effects and Random Stratum-by-year Effects}, - author = {Candy, Sg}, - year = 2004, - journal = {Ccamlr Science}, - volume = 11, - pages = {59--80} -} - -@Article{cane2003expression, - title = {Expression and Mechanistic Analysis of A Germacradienol Synthase From {{\textit{Streptomyces Coelicolor}}} Implicated in Geosmin Biosynthesis}, - author = {Cane, David E. and Watt, Rory M.}, - year = 2003, - journal = {Proceedings of the National Academy of Sciences}, - volume = 100, - pages = {1547--1551}, - url = {http://www.pnas.org/content/100/4/1547.abstract}, - number = 4, - doi = {10.1073/pnas.0337625100} -} - -@Article{cane2006geosmin, - title = {Geosmin Biosynthesis in {{\textit{Streptomyces Avermitilis}}}. Molecular Cloning, Expression, and Mechanistic Study of the Germacradienol/geosmin Synthase}, - author = {Cane, David E. and He, Xiaofei and Kobayashi, Seiji and {\"o}mura, Satoshi and Ideda, Haruo}, - year = 2006, - journal = {The Journal of Antibiotics}, - publisher = {Nature Publishing Group}, - volume = 59, - pages = {471--479}, - url = {https://www.nature.com/articles/ja200666.pdf}, - number = 8, - doi = {10.1038/ja.2006.66} -} - -@Article{canfield1981prediction, - title = {Prediction of Total Phosphorus Concentrations, Chlorophyll A, and Secchi Depths in Natural and Artificial Lakes}, - author = {Canfield Jr., Daniel E. and Bachmann, Roger W.}, - year = 1981, - journal = {Canadian Journal of Fisheries and Aquatic Sciences}, - volume = 38, - pages = {414--423}, - url = {https://doi.org/10.1139/f81-058}, - number = 4, - doi = {10.1139/f81-058}, - eprint = {https://doi.org/10.1139/f81-058} -} - -@Article{cao2015lan, - title = {蓝藻遗传多样性的分子生物学研究进展}, - author = {曹焜 and 荆瑞勇 and 王光华 and 郭永霞}, - year = 2015, - journal = {土壤与作物}, - pages = {183--189}, - urlaccessdate = {2016-02-24}, - number = 04, - language = {Zh} -} - -@Article{caporaso2012ultra, - title = {Ultra-high-throughput Microbial Community Analysis on the Illumina Hiseq and Miseq Platforms}, - author = {Caporaso, J. Gregory and Lauber, Christian L. and Walters, William A. and Berg-lyons, Donna and Huntley, James and Fierer, Noah and Owens, Sarah M. and Betley, Jason and Fraser, Louise and Bauer, Markus and Gormley, Niall and Gilbert, Jack A. and Smith, Geoff and Knight, Rob}, - year = 2012, - month = {Aug}, - journal = {Isme J}, - publisher = {International Society for Microbial Ecology}, - volume = 6, - pages = {1621--1624}, - url = {http://dx.doi.org/10.1038/ismej.2012.8}, - number = 8 -} - -@Article{cardinale2011biodiversity, - title = {Biodiversity Improves Water Quality Through Niche Partitioning}, - author = {Cardinale, Bradley J.}, - year = 2011, - month = {Apr}, - journal = {Nature}, - publisher = {Nature Publishing Group, A Division of Macmillan Publishers Limited. All Rights Reserved.}, - volume = 472, - pages = {86--89}, - url = {http://dx.doi.org/10.1038/nature09904}, - number = 7341, - doi = {10.1038/nature09904} -} - -@Article{caron1993light, - title = {Light-dependent Phagotrophy in the Freshwater Mixotrophic Chrysophyte Dinobryon Cylindricum}, - author = {Caron, David A. and Sanders, Robert W. and Lim, Ee Lin and Marras{\'e}, Celia and Amaral, Linda A. and Whitney, Sheri and Aoki, Rika B. and Porters, Karen G.}, - year = 1993, - journal = {Microbial Ecology}, - volume = 25, - pages = {93--111}, - url = {http://dx.doi.org/10.1007/bf00182132}, - number = 1, - doi = {10.1007/bf00182132} -} - -@Article{caron2010harmful, - title = {Harmful Algae and Their Potential Impacts on Desalination Operations Off Southern California}, - author = {David A. Caron and Marie-{\`e}ve Garneau and Erica Seubert and Meredith D.a. Howard and Lindsay Darjany and Astrid Schnetzer and Ivona Cetini{\'c} and Gerry Filteau and Phil Lauri and Burton Jones and Shane Trussell}, - year = 2010, - journal = {Water Research}, - volume = 44, - pages = {385--416}, - url = {http://www.sciencedirect.com/science/article/pii/s0043135409004382}, - number = 2, - doi = {10.1016/j.watres.2009.06.051} -} - -@Article{carr2016los, - title = {Los Angeles' 'shade Balls' to Protect City Reservoir Were A Success, Officials Say}, - author = {Ada Carr}, - year = 2016, - url = {https://weather.com/news/news/los-angeles-reservoir-shade-balls-success}, - journaltitle = {Weather.com}, - bdsk-url-1 = {https://weather.com/news/news/los-angeles-reservoir-shade-balls-success} -} - -@InCollection{carty2015dinoflagellates, - title = {Chapter 17 - Dinoflagellates}, - author = {Susan Carty and Matthew W. Parrow}, - year = 2015, - booktitle = {Freshwater Algae of North America (second Edition)}, - publisher = {Academic Press}, - pages = {773--807}, - url = {http://www.sciencedirect.com/science/article/pii/b9780123858764000177}, - address = {Boston}, - isbn = {978-0-12-385876-4}, - doi = {10.1016/b978-0-12-385876-4.00017-7} -} - -@Article{castenholz1969thermophilic, - title = {Thermophilic Blue-green Algae and the Thermal Environment.}, - author = {Castenholz, Richard W}, - year = 1969, - journal = {Bacteriological Reviews}, - publisher = {American Society for Microbiology (asm)}, - volume = 33, - pages = 476, - number = 4 -} - -@Article{catherine2013review, - title = {A Review of Current Knowledge on Toxic Benthic Freshwater Cyanobacteria -- Ecology, Toxin Production and Risk Management}, - author = {Quiblier Catherine and Wood Susanna and Echenique-subiabre Isidora and Heath Mark and Villeneuve Aur{\'e}lie and Humbert Jean-fran{\c C}ois}, - year = 2013, - journal = {Water Research}, - volume = 47, - pages = {5464--5479}, - number = 15, - doi = {10.1016/j.watres.2013.06.042} -} - -@Article{cees1974cause, - title = {Cause and Identification of Taste and Odour Compounds in Water}, - author = {B. Cees and J. Zoeteman and Gerrit J. Piet}, - year = 1974, - journal = {Science of the Total Environment}, - volume = 3, - pages = {103--115}, - url = {http://www.sciencedirect.com/science/article/pii/0048969774900424}, - number = 1, - doi = {10.1016/0048-9697(74)90042-4} -} - -@Article{celekli2014determination, - title = {Determination of Ecological Status and Ecological Preferences of Phytoplankton Using Multivariate Approach in A Mediterranean Reservoir}, - author = {\c{c}elekli, Abuzer and \"{o}zt\"{u}rk, Baki}, - year = 2014, - journal = {Hydrobiologia}, - publisher = {Springer International Publishing}, - volume = 740, - pages = {115--135}, - url = {http://dx.doi.org/10.1007/s10750-014-1948-8}, - number = 1, - doi = {10.1007/s10750-014-1948-8}, - language = {English} -} - -@Article{cellamare2010tropical, - title = {Tropical Phytoplankton Taxa in Aquitaine Lakes (france)}, - author = {Cellamare, Maria and Leit?o, Maria and Coste, Michel and Dutartre, Alain and Haury, Jacques}, - year = 2010, - journal = {Hydrobiologia}, - publisher = {Springer Netherlands}, - volume = 639, - pages = {129--145}, - url = {http://dx.doi.org/10.1007/s10750-009-0029-x}, - language = {English}, - doi = {10.1007/s10750-009-0029-x} -} - -@Article{centis2010structure, - title = {Structure of the Diatom Community of the River Adige (north-eastern Italy) Along A Hydrological Gradient}, - author = {Centis, Barbara and Tolotti, Monica and Salmaso, Nico}, - year = 2010, - journal = {Hydrobiologia}, - publisher = {Springer Netherlands}, - volume = 639, - pages = {37--42}, - url = {http://dx.doi.org/10.1007/s10750-009-0019-z}, - language = {English}, - doi = {10.1007/s10750-009-0019-z} -} - -@Article{chaffin2018interactions, - title = {Interactions Between Nitrogen Form, Loading Rate, and Light Intensity on {{\textit{Microcystis}}} and {{\textit{Planktothrix}}} Growth and Microcystin Production}, - author = {Justin D. Chaffin and Timothy W. Davis and Derek J. Smith and Mikayla M. Baer and Gregory J. Dick}, - year = 2018, - journal = {Harmful Algae}, - volume = 73, - pages = {84--97}, - url = {http://www.sciencedirect.com/science/article/pii/s1568988318300210}, - doi = {10.1016/j.hal.2018.02.001} -} - -@Article{chalifour2011temperature, - title = {Temperature-dependent Sensitivity of Growth and Photosynthesis of Scenedesmus Obliquus, Navicula Pelliculosa and Two Strains of {{\textit{Microcystis aeruginosa}}} to the Herbicide Atrazine}, - author = {Annie Chalifour and Philippe Juneau}, - year = 2011, - journal = {Aquatic Toxicology}, - volume = 103, - pages = {9--17}, - url = {http://www.sciencedirect.com/science/article/pii/s0166445x11000233}, - number = {1-2}, - doi = {10.1016/j.aquatox.2011.01.016} -} - -@PhDThesis{chang2009qian, - title = {浅水湖泊生态系统的草-藻型稳态特征与稳态转换研究}, - author = {常锋毅 and 刘永定}, - school = {中国科学院研究生院}, - year = 2009 -} - -@Article{charpin1998seasonal, - title = {Seasonal Variations of Phytoplankton Photosynthate Partitioning in Two Lakes of Different Trophic Level}, - author = {Charpin, M.f. and Maurin, N. and Amblard, C. and Devaux, J.}, - year = 1998, - journal = {Journal of Plankton Research}, - volume = 20, - pages = {901--921}, - url = {http://plankt.oxfordjournals.org/content/20/5/901.abstract}, - number = 5, - doi = {10.1093/plankt/20.5.901}, - eprint = {http://plankt.oxfordjournals.org/content/20/5/901.full.pdf+html} -} - -@Article{chen1999wei, - title = {微囊藻和栅藻共培养试验机器竞争参数的计算}, - author = {陈德辉 and 刘永定 and 袁俊峰等}, - year = 1999, - journal = {生态学报}, - volume = 19, - pages = {908--913}, - number = 6, - language = {Zh} -} - -@Article{chen2003fu, - title = {浮游藻类三个常见属(颤藻属、直链硅藻属和针杆藻属)学名变更的解释}, - author = {陈宇炜 and 李朋富 and Martin Dokulil}, - year = 2003, - volume = 2003, - pages = {85--94}, - journaltitle = {湖泊科学}, - number = 01 -} - -@Article{chen2003long, - title = {Long-term Dynamics of Phytoplankton Assemblages: {{\textit{Microcystis}}}-domination in {Lake Taihu}, A Large Shallow Lake in {China}}, - author = {Chen, Yuwei and Qin, Boqiang and Teubner, Katrin and Dokulil, Martin T.}, - year = 2003, - journal = {Journal of Plankton Research}, - volume = 25, - pages = {445--453}, - url = {http://plankt.oxfordjournals.org/content/25/4/445.abstract}, - number = 4, - doi = {10.1093/plankt/25.4.445}, - eprint = {http://plankt.oxfordjournals.org/content/25/4/445.full.pdf+html} -} - -@Article{chen2010situ, - title = {In Situ Measurement of Odor Compound Production by Benthic Cyanobacteria}, - author = {Chen, Yan-min and Hobson, Peter and Burch, Michael D. and Lin, Tsair-fuh}, - year = 2010, - journal = {Jounral of Environmental Monitoring}, - publisher = {The Royal Society of Chemistry}, - volume = 12, - pages = {769--775}, - url = {http://dx.doi.org/10.1039/b918487b}, - doi = {10.1039/b918487/b} -} - -@Article{chen2010systematic, - title = {A Systematic Study on Spatial and Seasonal Patterns of Eight Taste and Odor Compounds With Relation to Various Biotic and Abiotic Parameters in Gonghu Bay of {Lake Taihu}, {China}}, - author = {Jun Chen and Ping Xie and Zhimei Ma and Yuan Niu and Min Tao and Xuwei Deng and Qing Wang}, - year = 2010, - journal = {Science of the Total Environment}, - volume = 409, - pages = {314--325}, - url = {http://www.sciencedirect.com/science/article/pii/s0048969710010958}, - number = 2, - doi = {10.1016/j.scitotenv.2010.10.010} -} - -@MastersThesis{chen2011shui, - title = {水体藻源嗅味物质产生特征与生物降解研究}, - author = {陈克云}, - school = {山东师范大学}, - year = 2011 -} - -@Article{chen2018observation, - title = {Observation and Simulation of 2-methylisoborneol in the Qingcaosha Reservoir, Changjiang Estuary}, - author = {Chen, Yizhong and Zhu, Jianrong}, - year = 2018, - month = {Sep}, - journal = {Journal of Oceanology and Limnology}, - volume = 36, - pages = {1586--1596}, - url = {https://doi.org/10.1007/s00343-018-7124-7}, - number = 5, - doi = {10.1007/s00343-018-7124-7} -} - -@PhDThesis{chen2018zhong, - title = {中国水体中产神经毒素蓝藻的分布、分子特征及监测}, - author = {陈友信 and 李仁辉}, - school = {中国科学院大学}, - year = 2018 -} - -@Article{chesson2000mechanisms, - title = {Mechanisms of Maintenance of Species Diversity}, - author = {Chesson, Peter}, - year = 2000, - journal = {Annual Review of Ecology and Systematics}, - volume = 31, - pages = {343--366}, - url = {http://www.annualreviews.org/doi/abs/10.1146/annurev.ecolsys.31.1.343}, - number = 1, - doi = {10.1146/annurev.ecolsys.31.1.343}, - eprint = {http://www.annualreviews.org/doi/pdf/10.1146/annurev.ecolsys.31.1.343} -} - -@Article{chia2018succession, - title = {Succession and Toxicity of {{\textit{Microcystis}}} and {{\textit{Anabaena}}} ({\textit{Dolichospermum}}) Blooms Are Controlled by Nutrient-dependent Allelopathic Interactions}, - author = {Mathias A. Chia and Jennifer G. Jankowiak and Benjamin J. Kramer and Jennifer A. Goleski and I-shuo Huang and Paul V. Zimba and Maria Do Carmo Bittencourt-oliveira and Christopher J. Gobler}, - year = 2018, - journal = {Harmful Algae}, - volume = 74, - pages = {67--77}, - url = {http://www.sciencedirect.com/science/article/pii/s1568988318300295}, - doi = {10.1016/j.hal.2018.03.002} -} - -@Article{chiu2016alternative, - title = {An Alternative Method to Quantify 2-{MIB} Producing Cyanobacteria in Drinking Water Reservoirs: Method Development and Field Applications}, - author = {Yiting Chiu and Hungkai Yen and Tsairfuh Lin}, - year = 2016, - journal = {Environmental Research}, - volume = 151, - pages = {618--627}, - url = {http://www.sciencedirect.com/science/article/pii/s0013935116305059}, - doi = {10.1016/j.envres.2016.08.034} -} - -@book{chorus1999toxic, - title = {Toxic cyanobacteria in water: a guide to their public health consequences, monitoring and management}, - author = {Chorus, Ingrid and Bartram, Jamie}, - year = {1999}, - publisher = {CRC Press} -} - -@Article{christ2009mixed, - title = {Mixed Effects Models and Extensions in Ecology With R}, - author = {Christ, Aaron}, - year = 2009, - journal = {Journal of Statistical Software}, - volume = 32, - pages = {1--3}, - number = 1 -} - -@Article{christensen2009dose, - title = {Dose-response Regressions for Algal Growth and Similar Continuous Endpoints: Calculation of Effective Concentrations}, - author = {Christensen, Erik R. and Kusk, Kresten O. and Nyholm, Niels}, - year = 2009, - journal = {Environmental Toxicology and Chemistry}, - publisher = {Wiley Periodicals, Inc.}, - volume = 28, - pages = {826--835}, - url = {http://dx.doi.org/10.1897/08-068r.1}, - number = 4, - doi = {10.1897/08-068r.1} -} - -@Article{christiansen2003microcystin, - title = {Microcystin Biosynthesis in {{\textit{Planktothrix}}}: Genes, Evolution, and Manipulation}, - author = {Christiansen, Guntram and Fastner, Jutta and Erhard, Marcel and B{\"o}rner, Thomas and Dittmann, Elke}, - year = 2003, - journal = {Journal of Bacteriology}, - volume = 185, - pages = {564--572}, - url = {http://jb.asm.org/content/185/2/564.abstract}, - number = 2, - doi = {10.1128/jb.185.2.564-572.2003} -} - -@Article{christiansen2013evaluation, - title = {Evaluation of Internal Loading and Water Level Changes: Implications for Phosphorus, Algal Production, and Nuisance Blooms in Kabetogama Lake, Voyageurs National Park, Minnesota}, - author = {Christensen, Victoria G. and Maki, Ryan P. and Kiesling, Richard L.}, - year = 2013, - journal = {Lake and Reservoir Management}, - volume = 29, - pages = {202--215}, - url = {http://dx.doi.org/10.1080/10402381.2013.831148}, - number = 3, - doi = {10.1080/10402381.2013.831148}, - eprint = {http://dx.doi.org/10.1080/10402381.2013.831148} -} - -@Article{chu2006bu, - title = {不同群体形态蓝藻的气囊与光的相互作用研究}, - author = {储昭升 and 金相灿 and 杨波 and 庞燕 and 胡小贞 and 阎峰 and 曾清如}, - year = 2006, - journal = {环境科学学报}, - volume = 26, - pages = {1909--1913}, - number = 11, - language = {Zh} -} - -@InCollection{chu2007effect, - title = {The Effect of Temperature on Growth Characteristics and Competitions of {{\textit{Microcystis aeruginosa}}} and {{\textit{Oscillatoria mougeotii}}} in A Shallow, Eutrophic Lake Simulator System}, - author = {Chu, Zhaosheng and Jin, Xiangcan and Iwami, Norio and Inamori, Yuhei}, - year = 2007, - booktitle = {Eutrophication of Shallow Lakes With Special Reference to {Lake Taihu}, {China}}, - publisher = {Springer Netherlands}, - volume = 194, - pages = {217--223}, - url = {http://dx.doi.org/10.1007/978-1-4020-6158-5_24}, - language = {English}, - isbn = {978-1-4020-6157-8}, - doi = {10.1007/978-1-4020-6158-5_24} -} - -@Article{churro2012species, - title = {Species-specific Real-time {PCR} Cell Number Quantification of the Bloom-forming Cyanobacterium {{\textit{Planktothrix agardhii}}}}, - author = {Churro, Catarina and Pereira, Paulo and Vasconcelos, Vitor and Val{\'e}rio, Elisabete}, - year = 2012, - month = {Sep}, - journal = {Archives of Microbiology}, - volume = 194, - pages = {749--757}, - url = {https://doi.org/10.1007/s00203-012-0809-y}, - number = 9, - doi = {10.1007/s00203-012-0809-y} -} - -@Article{cires2016a, - title = {A Review of the Phylogeny, Ecology and Toxin Production of Bloom-forming {{\textit{Aphanizomenon}}} spp. and Related Species Within the Nostocales (cyanobacteria)}, - author = {Samuel Cirés and Andreas Ballot}, - year = 2016, - journal = {Harmful Algae}, - volume = 54, - pages = {21--43}, - url = {http://www.sciencedirect.com/science/article/pii/S1568988315301086}, - note = {Global Expansion of Harmful Cyanobacterial Blooms: Diversity, Ecology, Causes, and Controls}, - doi = {10.1016/j.hal.2015.09.007} -} - -@Article{clarke1954elements, - title = {Elements of Ecology.}, - author = {Clarke, George Leonard and Others}, - year = 1954, - journal = {Elements of Entomology}, - publisher = {John Wiley \& Sons, Inc., New York and Chapman \& Hall, Ltd., London} -} - -@InCollection{clay2015cryptomonads, - title = {Chapter 18 - Cryptomonads}, - author = {Brec L. Clay}, - year = 2015, - booktitle = {Freshwater Algae of North America (second Edition)}, - publisher = {Academic Press}, - pages = {809--850}, - url = {http://www.sciencedirect.com/science/article/pii/b9780123858764000189}, - address = {Boston}, - isbn = {978-0-12-385876-4}, - doi = {10.1016/b978-0-12-385876-4.00018-9} -} - -@Book{clescerl1999standard, - title = {Standard Methods for Examination of Water Wastewater (20th)}, - author = {Clescerl, Lenore S. and Greenberg, Arnold E. and Eaton, Andrew D.}, - year = 1999, - publisher = {American Public Health Association, American Water Works Association, Water Environment Federation}, - pages = {1--1325} -} - -@Article{closson2014comparison, - title = {Comparison of the Toxicity of Two Chelated Copper Algaecides and Copper Sulfate to Non-target Fish}, - author = {Closson, K. R. and Paul, E. A.}, - year = 2014, - month = {Dec}, - journal = {Bulletin of Environmental Contamination and Toxicology}, - volume = 93, - pages = {660--665}, - url = {https://doi.org/10.1007/s00128-014-1394-3}, - number = 6, - doi = {10.1007/s00128-014-1394-3} -} - -@Misc{cmdc2018data, - title = {Data Set of Daily Radiation in {China}}, - author = {{CMDSC}, {China} Meteorological Data Service Center}, - year = 2018, - url = {https://data.cma.cn/en}, - howpublished = {\url{https://data.cma.cn/en}} -} - -@Article{codd1995cyanobacterial, - title = {Cyanobacterial Toxins: Occurrence, Properties and Biological Significance}, - author = {G.a. Codd}, - year = 1995, - journal = {Water Science and Technology}, - volume = 32, - pages = {149--156}, - url = {http://www.sciencedirect.com/science/article/pii/0273122395006923}, - number = 4, - doi = {10.1016/0273-1223(95)00692-3} -} - -@Article{codd2000cyanobacterial, - title = {Cyanobacterial Toxins, the Perception of Water Quality, and the Prioritisation of Eutrophication Control}, - author = {Geoffrey A Codd}, - year = 2000, - journal = {Ecological Engineering}, - volume = 16, - pages = {51--60}, - url = {http://www.sciencedirect.com/science/article/pii/s0925857400000896}, - number = 1, - doi = {10.1016/s0925-8574(00)00089-6} -} - -@Article{cole1997nitrogen, - title = {Nitrogen Loading of Rivers As A Human-driven Process, Mj Mcdonnell, Sta Pickett, Editors}, - author = {Cole, Jj and Peierls, Bl and Caraco, Nf and Pace, Ml}, - year = 1997, - journal = {Humans As Components of Ecosystems: the Ecology of Subtle Human Effects and Populated Areas}, - pages = {141--157} -} - -@Article{colwell2009biodiversity, - title = {Biodiversity: Concepts, Patterns, and Measurement}, - author = {Colwell, R. K.}, - year = 2009, - journal = {The Princeton Guide to Ecology}, - pages = {257--63} -} - -@Article{cong2006yang, - title = {扬水曝气技术在水源水质改善中的应用}, - author = {丛海兵 and 黄廷林 and 赵建伟 and 周真明 and 何文杰 and 韩宏大}, - year = 2006, - volume = 2006, - pages = {215--218}, - journaltitle = {环境污染与防治}, - number = 03 -} - -@Article{conley2009controlling, - title = {Controlling Eutrophication: Nitrogen and Phosphorus}, - author = {Conley, Daniel J and Paerl, Hans W and Howarth, Robert W and Boesch, Donald F and Seitzinger, Sybil P and Havens, Karl E and Lancelot, Christiane and Likens, Gene E and Others}, - year = 2009, - journal = {Science}, - volume = 323, - pages = {1014--1015}, - number = 5917 -} - -@Article{connell1980diversity, - title = {Diversity and the Coevolution of Competitors, Or the Ghost of Competition Past}, - author = {Joseph H. Connell}, - year = 1980, - journal = {Oikos}, - publisher = {[nordic Society Oikos, Wiley]}, - volume = 35, - pages = {131--138}, - url = {http://www.jstor.org/stable/3544421}, - number = 2 -} - -@Article{cook2001application, - title = {The Application of Powdered Activated Carbon for {MIB} and Geosmin Removal: Predicting {PAC} Doses in Four Raw Waters}, - author = {David Cook and Gayle Newcombe and Pascale Sztajnbok}, - year = 2001, - journal = {Water Research}, - volume = 35, - pages = {1325--1333}, - url = {http://www.sciencedirect.com/science/article/pii/s0043135400003638}, - number = 5, - doi = {10.1016/s0043-1354(00)00363-8} -} - -@Book{cooke2013lake, - title = {Lake and Reservoir Restoration}, - author = {Cooke, G Dennis and Welch, Eugene B and Peterson, Spencer A}, - year = 2013, - publisher = {Elsevier} -} - -@Article{cotsaris1995identification, - title = {The Identification of Odorous Metabolites Produced From Algal Monocultures}, - author = {E. Cotsaris and A. Bruchet and J. Mallevialle and D.b. Bursill}, - year = 1995, - journal = {Water Science and Technology}, - volume = 31, - pages = {251--258}, - url = {http://www.sciencedirect.com/science/article/pii/0273122395004845}, - number = 11, - note = {Off-flavours in the Aquatic Environment 1994selected Proceedings of the 4th International Symposium on Off-flavours in the Aquatic Environment}, - doi = {10.1016/0273-1223(95)00484-5} -} - -@Book{cowpertwait2009introductory, - title = {Introductory Time Series With R}, - author = {Cowpertwait, Paul Sp and Metcalfe, Andrew V}, - year = 2009, - publisher = {Springer} -} - -@Article{cramer1952growth, - title = {Growth and Photosynthetic Characteristics of Euglena Gracilis}, - author = {Cramer, Marian and Myers, Jack}, - year = 1952, - journal = {Archiv Für Mikrobiologie}, - publisher = {Springer-verlag}, - volume = 17, - pages = {384--402}, - url = {http://dx.doi.org/10.1007/bf00410835}, - language = {English}, - doi = {10.1007/bf00410835} -} - -@Article{cui2008shui, - title = {水华爆发叶绿素-$\alpha$与表征指标溶解氧和ph的关系}, - author = {崔莉凤 and 黄振芳 and 刘载文等}, - year = 2008, - journal = {给水排水}, - volume = 34, - pages = {177--178}, - number = {Z2}, - language = {Zh} -} - -@Article{cuker1983grazing, - title = {Grazing and Nutrient Interactions in Controlling the Activity and Composition of the Epilithic Algal Community of An Arctic Lake}, - author = {Cuker, Benjamin E.}, - year = 1983, - journal = {Limnology and Oceanography}, - publisher = {Jstor}, - volume = 28, - pages = {133--141}, - number = 1 -} - -@Article{cullen1998behavior, - title = {Behavior, Physiology and the Niche of Depth-regulating Phytoplankton}, - author = {Cullen, John J and Macintyre, J Geoffrey}, - year = 1998, - journal = {Nato Asi Series G Ecological Sciences}, - publisher = {Springer Verlag}, - volume = 41, - pages = {559--580} -} - -@Article{cunha2011limiting, - title = {Limiting Factors for Phytoplankton Growth in Subtropical Reservoirs: the Effect of Light and Nutrient Availability in Different Longitudinal Compartments}, - author = {Cunha, Davi Gasparini F. and Calijuri, Maria Do Carmo}, - year = 2011, - journal = {Lake and Reservoir Management}, - volume = 27, - pages = {162--172}, - url = {http://dx.doi.org/10.1080/07438141.2011.574974}, - number = 2, - doi = {10.1080/07438141.2011.574974}, - eprint = {http://dx.doi.org/10.1080/07438141.2011.574974} -} - -@Article{cunningham2005modeling, - title = {Modeling Count Data of Rare Species: Some Statistical Issues}, - author = {Cunningham, Ross B. and Lindenmayer, David B.}, - year = 2005, - journal = {Ecology}, - publisher = {Ecological Society of America}, - volume = 86, - pages = {1135--1142}, - url = {http://dx.doi.org/10.1890/04-0589}, - number = 5, - doi = {10.1890/04-0589} -} - -@Article{cuypers2011impact, - title = {Impact of Internal Waves on the Spatial Distribution of {{\textit{Planktothrix rubescens}}} (cyanobacteria) in An Alpine Lake}, - author = {Cuypers, Yannis and Vincon-leite, Brigitte and Groleau, Alexis and Tassin, Bruno and Humbert, Jean-francois}, - year = 2011, - month = apr, - journal = {Isme J}, - publisher = {International Society for Microbial Ecology}, - volume = 5, - pages = {580--589}, - url = {http://dx.doi.org/10.1038/ismej.2010.154}, - number = 4 -} - -@Misc{daac2014routine, - title = {Routine Aster Global Digital Elevation Model}, - author = {Lp Daac}, - year = 2014, - url = {https://lpdaac.usgs.gov/node/1079}, - howpublished = {\url{https://lpdaac.usgs.gov/node/1079}}, - doi = {10.5067/aster/astgtm.002} -} - -@Article{dai2002south, - title = {Aseismic Calculation Study on Aqueduct Across Yellow River for South to North Water Diversion Project}, - author = {Xianghe Dai and Lingling Chen and Jiefang Wu}, - year = 2002, - journal = {Journal of Yangtze River Scientific Research Institue (in Chinese)}, - volume = 19, - pages = {52--55}, - number = 3 -} - -@Article{dai2012ya, - title = {压力下伪空胞破裂对 3 种水华蓝藻生长及光合作用的影响}, - author = {代然 and 储昭升 and 于秀娟 and 杨红君 and 金相灿}, - year = 2012, - journal = {环境科学学报}, - volume = 25, - pages = {30--35}, - number = 1, - language = {Zh} -} - -@MastersThesis{dai2017an, - title = {氨氮在富营养化浅水湖泊藻-草稳态转换中的作用研究}, - author = {代亮亮 and 李根保}, - school = {中国科学院大学}, - year = 2017 -} - -@Article{daufresne2009global, - title = {Global Warming Benefits the Small in Aquatic Ecosystems}, - author = {Daufresne, Martin and Lengfellner, Kathrin and Sommer, Ulrich}, - year = 2009, - journal = {Proceedings of the National Academy of Sciences}, - volume = 106, - pages = {12788--12793}, - url = {http://www.pnas.org/content/106/31/12788.abstract}, - number = 31, - doi = {10.1073/pnas.0902080106} -} - -@Article{davi1999phenolic, - title = {Phenolic Compounds in Surface Water}, - author = {M.letizia Dav{\`i} and Franco Gnudi}, - year = 1999, - journal = {Water Research}, - volume = 33, - pages = {3213--3219}, - url = {http://www.sciencedirect.com/science/article/pii/s0043135499000275}, - number = 14, - doi = {10.1016/s0043-1354(99)00027-5} -} - -@Article{davies2004origins, - title = {Origins and Implications of Drinking Water Odours in Lakes and Reservoirs of {British Columbia}, {Canada}}, - author = {J.-m. Davies and M. Roxborough and A. Mazumder}, - year = 2004, - journal = {Water Research}, - volume = 38, - pages = {1900--1910}, - url = {http://www.sciencedirect.com/science/article/pii/s0043135404000259}, - number = 7, - doi = {10.1016/j.watres.2004.01.008} -} - -@Article{davis1964evidence, - title = {Evidence for the Eutrophication of Lake Erie From Phytoplankton Records}, - author = {Davis, Charles C.}, - year = 1964, - journal = {Limnology and Oceanography}, - publisher = {Jstor}, - volume = 9, - pages = {275--283}, - number = 3 -} - -@Article{davis2003annual, - title = {The Annual Cycle of Growth Rate and Biomass Change in {{\textit{Planktothrix}}} spp. in {Blelham Tarn, English Lake District}}, - author = {Davis, P.a. and Dent, M. and Parker, J. and Reynolds, C.s. and Walsby, A.e.}, - year = 2003, - journal = {Freshwater Biology}, - publisher = {Blackwell Science Ltd}, - volume = 48, - pages = {852--867}, - url = {http://dx.doi.org/10.1046/j.1365-2427.2003.01055.x}, - number = 5, - doi = {10.1046/j.1365-2427.2003.01055.x} -} - -@Article{davis2006eutrophication, - title = {Eutrophication in Australian Rivers, Reservoirs and Estuaries – A Southern Hemisphere Perspective on the Science and Its Implications}, - author = {Davis, J.richard and Koop, Klaus}, - year = 2006, - journal = {Hydrobiologia}, - publisher = {Kluwer Academic Publishers}, - volume = 559, - pages = {23--76}, - url = {http://dx.doi.org/10.1007/s10750-005-4429-2}, - number = 1, - doi = {10.1007/s10750-005-4429-2}, - language = {English} -} - -@Article{davis2009effects, - title = {The Effects of Temperature and Nutrients on the Growth and Dynamics of Toxic and Non-toxic Strains of {{\textit{Microcystis}}} During Cyanobacteria Blooms}, - author = {Timothy W. Davis and Dianna L. Berry and Gregory L. Boyer and Christopher J. Gobler}, - year = 2009, - journal = {Harmful Algae}, - volume = 8, - pages = {715--725}, - url = {http://www.sciencedirect.com/science/article/pii/s1568988309000390}, - number = 5, - note = {This Issue Contains the Special Section on Strains}, - doi = {10.1016/j.hal.2009.02.004} -} - -@Article{death2010water, - title = {Water Quality As A Regional Driver of Coral Biodiversity and Macroalgae on the Great Barrier Reef}, - author = {De'ath, Glenn and Fabricius, Katharina}, - year = 2010, - month = apr, - journal = {Ecological Applications}, - booktitle = {Ecological Applications}, - publisher = {Ecological Society of America}, - volume = 20, - pages = {840--850}, - url = {http://dx.doi.org/10.1890/08-2023.1}, - number = 3, - doi = {10.1890/08-2023.1}, - comment = {Doi: 10.1890/08-2023.1} -} - -@Article{declerck2005multi, - title = {Multi-group Biodiversity in Shallow Lakes Along Gradients of Phosphorus and Water Plant Cover}, - author = {Declerck, S and Vandekerkhove, J and Johansson, L and Muylaert, K and Conde-porcuna, Jm and Van Der Gucht, K and Perez-martinez, C and Lauridsen, T and Schwenk, K and Zwart, G and Rommens, W and Lopez-ramos, J and Jeppesen, E and Vyverman, W and Brendonck, L and De Meester, L}, - year = 2005, - month = {Jul}, - journal = {Ecology}, - volume = 86, - pages = {1905--1915}, - number = 7, - doi = {10.1890/04-0373} -} - -@Article{dehairs1989tight, - title = {Tight Coupling Between Enrichment of Iron and Manganese in North Sea Suspended Matter and Sedimentary Redox Processes: Evidence for Seasonal Variability}, - author = {F. Dehairs and W. Baeyens and D. Van Gansbeke}, - year = 1989, - journal = {Estuarine, Coastal and Shelf Science}, - volume = 29, - pages = {457--471}, - url = {http://www.sciencedirect.com/science/article/pii/0272771489900802}, - number = 5, - doi = {10.1016/0272-7714(89)90080-2} -} - -@Article{delgado2010characterisation, - title = {Characterisation by Spme-gc-ms of the Volatile Profile of A Spanish Soft Cheese P.d.o. Torta Del Casar During Ripening}, - author = {Francisco Jos{\'e} Delgado and Jos{\'e}茅 Gonz{\'a}lez-crespo and Ram{\'o}n Cava and Jes{\'u}s Garc{\'i}a-parra and Rosario Ram{\'i}rez}, - year = 2010, - journal = {Food Chemistry}, - volume = 118, - pages = {182--189}, - url = {http://www.sciencedirect.com/science/article/pii/s0308814609005512}, - number = 1, - doi = {10.1016/j.foodchem.2009.04.081} -} - -@Article{deng2011simultaneous, - title = {Simultaneous Determination of Eight Common Odors in Natural Water Body Using Automatic Purge and Trap Coupled to Gas Chromatography With Mass Spectrometry}, - author = {Xuwei Deng and Gaodao Liang and Jun Chen and Min Qi and Ping Xie}, - year = 2011, - journal = {Journal of Chromatography A}, - volume = 1218, - pages = {3791--3798}, - number = 24, - doi = {10.1016/j.chroma.2011.04.041} -} - -@Article{denobel1997competition, - title = {Competition for Phosphorus Between the Nitrogen-fixing Cyanobacteria {{\textit{Anabaena}}} and {{\textit{Aphanizomenon}}}}, - author = {De Nobel, W.t.(pim) and Huisman, Jef and Snoep, Jacky L and Mur, Luuc R}, - year = 1997, - journal = {Fems Microbiology Ecology}, - publisher = {Blackwell Publishing Ltd}, - volume = 24, - pages = {259--267}, - url = {http://dx.doi.org/10.1111/j.1574-6941.1997.tb00443.x}, - number = 3, - doi = {10.1111/j.1574-6941.1997.tb00443.x} -} - -@Article{derakhshani2015extended, - title = {An Extended Single-index Multiplexed 16s Rrna Sequencing for Microbial Community Analysis on Miseq Illumina Platforms}, - author = {Derakhshani, Hooman and Tun, Hein Min and Khafipour, Ehsan}, - year = 2015, - journal = {Journal of Basic Microbiology}, - pages = {N/a--n/a}, - url = {http://dx.doi.org/10.1002/jobm.201500420}, - doi = {10.1002/jobm.201500420} -} - -@Article{devercelli2010changes, - title = {Changes in Phytoplankton Morpho-functional Groups Induced by Extreme Hydroclimatic Events in the Middle Paran? River (argentina)}, - author = {Devercelli, Melina}, - year = 2010, - journal = {Hydrobiologia}, - publisher = {Springer Netherlands}, - volume = 639, - pages = {5--19}, - url = {http://dx.doi.org/10.1007/s10750-009-0020-6}, - language = {English}, - doi = {10.1007/s10750-009-0020-6} -} - -@Article{dias2002production, - title = {Production of Paralytic Shellfish Toxins by {{\textit{Aphanizomenon}}} sp. lmecya 31 (cyanobacteria)1}, - author = {Dias, Elsa and Pereira, Paulo and Franca, Susana}, - year = 2002, - journal = {Journal of Phycology}, - volume = 38, - pages = {705--712}, - url = {https://onlinelibrary.wiley.com/doi/abs/10.1046/j.1529-8817.2002.01146.x}, - number = 4, - doi = {10.1046/j.1529-8817.2002.01146.x}, - eprint = {https://onlinelibrary.wiley.com/doi/pdf/10.1046/j.1529-8817.2002.01146.x} -} - -@Article{dickschat2005novel, - title = {A Novel Type of Geosmin Biosynthesis in Myxobacteria}, - author = {Dickschat, Jeroen S. and Bode, Helge B. and Mahmud, Taifo and Müller, Rolf and Schulz, Stefan}, - year = 2005, - journal = {The Journal of Organic Chemistry}, - volume = 70, - pages = {5174--5182}, - url = {http://dx.doi.org/10.1021/jo050449g}, - number = 13, - doi = {10.1021/jo050449g}, - note = {Pmid: 15960521}, - eprint = {http://dx.doi.org/10.1021/jo050449g} -} - -@Article{dickschat2007biosynthesis, - title = {Biosynthesis of the Off-flavor 2-methylisoborneol by the Myxobacterium Nannocystis Exedens}, - author = {Dickschat, Jeroen s. and Nawrath, Thorben and Thiel, Verena and Kunze, Brigitte and Müller, Rolf and Schulz, Stefan}, - year = 2007, - journal = {Angewandte Chemie International Edition}, - volume = 46, - pages = {8287--8290}, - url = {https://onlinelibrary.wiley.com/doi/abs/10.1002/anie.200702496}, - number = 43, - doi = {10.1002/anie.200702496}, - eprint = {https://onlinelibrary.wiley.com/doi/pdf/10.1002/anie.200702496} -} - -@Article{dietrich2006aesthetic, - title = {{aesthetic Issues for Drinking Water}}, - author = {Dietrich, Andrea M.}, - year = 2006, - month = 07, - journal = {Journal of Water and Health}, - volume = 4, - pages = {11--16}, - url = {https://dx.doi.org/10.2166/wh.2006.0038}, - number = {S1}, - doi = {10.2166/wh.2006.0038} -} - -@Book{dillon2005field, - title = {Field Guide for the Determination of Biological Contaminants in Environmental Samples}, - author = {Dillon, H Kenneth and Heinsohn, Patricia A and Miller, J David}, - year = 2005, - publisher = {Aiha} -} - -@Article{ding1999genotoxicity, - title = {Genotoxicity of Microcystic Cyanobacteria Extract of A Water Source in {China}}, - author = {Wen-xing Ding and Han-ming Shen and Hui-gang Zhu and Bee-lan Lee and Choon-nam Ong}, - year = 1999, - journal = {Mutation Research/genetic Toxicology and Environmental Mutagenesis}, - volume = 442, - pages = {69--77}, - number = 2, - doi = {10.1016/s1383-5718(99)00064-9} -} - -@Article{ding2011yang, - title = {洋河水库蓝藻水华爆发预测影响因子研究}, - author = {丁薇 and 揣小明 and 钱新 and 胡志新 and 储昭升 and 杨柳燕}, - year = 2011, - journal = {环境监控与预警}, - volume = 3, - pages = {1--5}, - number = 04, - language = {Zh} -} - -@Article{dionigi1991effects, - title = {Effects of Farnesol and the Off-flavor Derivative Geosmin on {{\textit{Streptomyces Tendae}}}}, - author = {Dionigi, C P and Millie, D F and Johnsen, P B}, - year = 1991, - journal = {Applied and Environmental Microbiology}, - volume = 57, - pages = {3429--3432}, - url = {http://aem.asm.org/content/57/12/3429.abstract}, - number = 12 -} - -@Article{dittmann2013cyanobacterial, - title = {Cyanobacterial Toxins: Biosynthetic Routes and Evolutionary Roots}, - author = {Dittmann, Elke and Fewer, David P. and Neilan, Brett A.}, - year = 2013, - journal = {Fems Microbiology Reviews}, - publisher = {The Oxford University Press}, - volume = 37, - pages = {23--43}, - url = {http://femsre.oxfordjournals.org/content/37/1/23}, - number = 1, - doi = {10.1111/j.1574-6976.2012.12000.x}, - eprint = {http://femsre.oxfordjournals.org/content/37/1/23.full.pdf} -} - -@Book{dixon1977seaweeds, - title = {Seaweeds of the British Isles}, - author = {Dixon, Peter Stanley and Irvine, Linda M}, - year = 1977, - publisher = {British Museum (natural History) London}, - volume = 1 -} - -@Book{dokulil1986seasonality, - title = {Seasonality of Freshwater Phytoplankton: A Global Perspective}, - author = {Dokulil, Martin and Skolaut, Claudia}, - year = 1986, - publisher = {Springer Netherlands}, - pages = {9--24}, - url = {http://dx.doi.org/10.1007/978-94-009-4818-1_2}, - chapter = {Succession of Phytoplankton in A Deep Stratifying Lake: Mondsee, Austria}, - address = {Dordrecht}, - isbn = {978-94-009-4818-1}, - doi = {10.1007/978-94-009-4818-1_2} -} - -@Article{dokulil2000cyanobacteria, - title = {Cyanobacterial Dominance in Lakes}, - author = {Dokulil, Martint. and Teubner, Katrin}, - year = 2000, - journal = {Hydrobiologia}, - publisher = {Kluwer Academic Publishers}, - volume = 438, - pages = {1--12}, - url = {http://dx.doi.org/10.1023/a%3a1004155810302}, - number = {1-3}, - doi = {10.1023/a:1004155810302}, - language = {English} -} - -@Article{dokulil2012deep, - title = {Deep Living {{\textit{Planktothrix rubescens}}} Modulated by Environmental Constraints and Climate Forcing}, - author = {Dokulil, Martint. and Teubner, Katrin}, - year = 2012, - journal = {Hydrobiologia}, - publisher = {Springer Netherlands}, - volume = 698, - pages = {29--46}, - url = {10.1007/s10750-012-1020-5}, - number = 1, - doi = {10.1007/s10750-012-1020-5}, - language = {English} -} - -@Article{domenico2011planktothrix, - title = {{\textit{Planktothrix}} Populations in Subalpine Lakes: Selection for Strains With Strong Gas Vesicles As A Function of Lake Depth, Morphometry and Circulation}, - author = {D{\'a}lelio Domenico and Gandolfi Andrea and Boscaini Adriano and Flaim Giovanna and Tolotti Monica and Salmaso Nico}, - journal = {Freshwater Biology}, - year = 2011, - volume = 56, - pages = {1481--1493}, - url = {https://onlinelibrary.wiley.com/doi/abs/10.1111/j.1365-2427.2011.02584.x}, - number = 8, - doi = {10.1111/j.1365-2427.2011.02584.x}, - eprint = {https://onlinelibrary.wiley.com/doi/pdf/10.1111/j.1365-2427.2011.02584.x} -} - -@Article{du1991beijing, - title = {北京密云水库水质研究}, - author = {杜桂森}, - year = 1991, - journal = {首都师范大学学报(自然科学版)}, - volume = 12, - pages = {82--85}, - number = 04, - language = {Zh} -} - -@Article{du1999miyun, - title = {密云水库水质现状及发展趋势}, - author = {杜桂森 and 孟李 and 张王武}, - year = 1999, - journal = {环境科学}, - volume = 02, - pages = {110--112}, - language = {Zh} -} - -@Article{duan2009two, - title = {Two-decade Reconstruction of Algal Blooms in {China}'s {Lake Taihu}}, - author = {Duan, Hongtao and Ma, Ronghua and Xu, Xiaofeng and Kong, Fanxiang and Zhang, Shouxuan and Kong, Weijuan and Hao, Jingyan and Shang, Linlin}, - year = 2009, - journal = {Environmental Science \& Technology}, - publisher = {American Chemical Society, 1155 16 Th St., Nw Washington Dc 20036 United States of America}, - volume = 43, - pages = {3522--3528}, - number = 10 -} - -@Article{dubinsky2010from, - title = {From the Light to the Darkness: Thriving At the Light Extremes in the Oceans}, - author = {Dubinsky, Zvy and Schofield, Oscar}, - year = 2010, - journal = {Hydrobiologia}, - publisher = {Springer Netherlands}, - volume = 639, - pages = {153--171}, - url = {http://dx.doi.org/10.1007/s10750-009-0026-0}, - language = {English}, - doi = {10.1007/s10750-009-0026-0} -} - -@Article{ducobu1998competition, - title = {Competition Between A Prochlorophyte and A Cyanobacterium Under Various Phosphorus Regimes: Comparison With the Droop Model}, - author = {Ducobu, H{\'e}l{\`e}ne and Huisman, Jef and Jonker, Richard R. and Mur, Luuc R.}, - year = 1998, - journal = {Journal of Phycology}, - publisher = {Blackwell Publishing Ltd}, - volume = 34, - pages = {467--476}, - url = {http://dx.doi.org/10.1046/j.1529-8817.1998.340467.x}, - number = 3, - doi = {10.1046/j.1529-8817.1998.340467.x} -} - -@Article{duncan1989importance, - title = {Importance of Physical Variables on the Seasonal Dynamics of Epilithic Algae in A Highly Shaded Canyon Stream}, - author = {Duncan, Scott W. and Blinn, Dean W.}, - year = 1989, - journal = {Journal of Phycology}, - publisher = {Blackwell Publishing Ltd}, - volume = 25, - pages = {455--461}, - url = {http://dx.doi.org/10.1111/j.1529-8817.1989.tb00250.x}, - number = 3, - doi = {10.1111/j.1529-8817.1989.tb00250.x} -} - -@Article{dunn2004occurrence, - title = {Occurrence and Quantity of Precipitation Can Be Modelled Simultaneously}, - author = {Dunn, Peter K}, - year = 2004, - journal = {International Journal of Climatology}, - publisher = {Wiley Online Library}, - volume = 24, - pages = {1231--1239}, - number = 10 -} - -@Manual{duong2014ks, - title = {Ks: Kernel Smoothing}, - author = {Tarn Duong}, - year = 2014, - url = {http://cran.r-project.org/package = ks}, - note = {R Package Version 1.9.3} -} - -@Article{durham2009disruption, - title = {Disruption of Vertical Motility by Shear Triggers Formation of Thin Phytoplankton Layers}, - author = {Durham, William M. and Kessler, John O. and Stocker, Roman}, - year = 2009, - journal = {Science}, - publisher = {American Association for the Advancement of Science}, - volume = 323, - pages = {1067--1070}, - url = {http://science.sciencemag.org/content/323/5917/1067}, - number = 5917, - doi = {10.1126/science.1167334} -} - -@Article{durrer1999dissolved, - title = {Dissolved and Particle-bound Geosmin in A Mesotrophic Lake ({lake Zürich}): Spatial and Seasonal Distribution and the Effect of Grazers}, - author = {M. Durrer and U. Zimmermann and F. Jüttner}, - year = 1999, - journal = {Water Research}, - volume = 33, - pages = {3628--3636}, - url = {http://www.sciencedirect.com/science/article/pii/s004313549900069x}, - number = 17, - doi = {10.1016/s0043-1354(99)00069-x} -} - -@Article{dzialowski2009development, - title = {Development of Predictive Models for Geosmin-related Taste and Odor in {Kansas}, {USA}, Drinking Water Reservoirs}, - author = {Andrew R. Dzialowski and Val H. Smith and Donald G. Huggins and Frank Denoyelles and Niang-choo Lim and Debbie S. Baker and Jason H. Beury}, - year = 2009, - journal = {Water Research}, - volume = 43, - pages = {2829--2840}, - url = {http://www.sciencedirect.com/science/article/pii/s004313540900219x}, - number = 11, - doi = {10.1016/j.watres.2009.04.001} -} - -@Book{eaton2005standard, - title = {Standard Methods for the Examination of Water \& Wastewater}, - author = {Eaton, Andrew D and Franson, Mary Ann H}, - year = 2005, - publisher = {American Public Health Association} -} - -@Article{eilers1988model, - title = {A Model for the Relationship Between Light Intensity and the Rate of Photosynthesis in Phytoplankton}, - author = {P.h.c. Eilers and J.c.h. Peeters}, - year = 1988, - journal = {Ecological Modelling}, - volume = 42, - pages = {199--215}, - url = {http://www.sciencedirect.com/science/article/pii/0304380088900579}, - number = {3--4}, - doi = {10.1016/0304-3800(88)90057-9} -} - -@Article{elith2006novel, - title = {Novel Methods Improve Prediction of Species’ Distributions From Occurrence Data}, - author = {Elith, Jane and H. Graham, Catherine and P. Anderson, Robert and Dudík, Miroslav and Ferrier, Simon and Guisan, Antoine and J. Hijmans, Robert and Huettmann, Falk and R. Leathwick, John and Lehmann, Anthony and Li, Jin and G. Lohmann, Lucia and A. Loiselle, Bette and Manion, Glenn and Moritz, Craig and Nakamura, Miguel and Nakazawa, Yoshinori and Mcc. M. Overton, Jacob and Townsend Peterson, A. and J. Phillips, Steven and Richardson, Karen and Scachetti-pereira, Ricardo And E. Schapire, Robert and Soberón, Jorge and Williams, Stephen and S. Wisz, Mary and E. Zimmermann, Niklaus}, - year = 2006, - journal = {Ecography}, - publisher = {Blackwell Publishing Ltd}, - volume = 29, - pages = {129--151}, - url = {http://dx.doi.org/10.1111/j.2006.0906-7590.04596.x}, - number = 2, - doi = {10.1111/j.2006.0906-7590.04596.x} -} - -@Article{elliott1999exploring, - title = {Exploring the Potential of the Protech Model to Investigate Phytoplankton Community Theory}, - author = {Elliott, J.a. and Reynolds, C.s. and Irish, A.e. and Tett, P.}, - year = 1999, - journal = {Hydrobiologia}, - publisher = {Kluwer Academic Publishers}, - volume = 414, - pages = {37--43}, - url = {http://dx.doi.org/10.1023/a%3a1003843815896}, - language = {English}, - doi = {10.1023/a:1003843815896} -} - -@Article{elser2009shifts, - title = {Shifts in Lake {N:P} Stoichiometry and Nutrient Limitation Driven by Atmospheric Nitrogen Deposition}, - author = {Elser, James J. and Andersen, Tom and Baron, Jill S. and Bergstr{\"o}m, Ann-kristin and Jansson, Mats and Kyle, Marcia and Nydick, Koren R. and Steger, Laura and Hessen, Dag O.}, - year = 2009, - journal = {Science}, - publisher = {American Association for the Advancement of Science}, - volume = 326, - pages = {835--837}, - url = {http://science.sciencemag.org/content/326/5954/835}, - number = 5954, - doi = {10.1126/science.1176199} -} - -@Article{epp1996grazing, - title = {Grazing on Filamentous Cyanobacteria by Daphnia Pulicaria}, - author = {Epp, Gregory T.}, - year = 1996, - journal = {Limnology and Oceanography}, - volume = 41, - pages = {560--567}, - url = {https://aslopubs.onlinelibrary.wiley.com/doi/abs/10.4319/lo.1996.41.3.0560}, - number = 3, - doi = {10.4319/lo.1996.41.3.0560}, - eprint = {https://aslopubs.onlinelibrary.wiley.com/doi/pdf/10.4319/lo.1996.41.3.0560} -} - -@Article{eriksson1989accumulation, - title = {Accumulation of A Peptide Toxin From the Cyanobacterium {{\textit{Oscillatoria agardhii}}} in the Freshwater Mussel {{\textit{Anadonta cygnea}}}}, - author = {Eriksson, John E. and Meriluoto, Jussi A. O. and Lindholm, Tore}, - year = 1989, - journal = {Hydrobiologia}, - publisher = {Kluwer Academic Publishers}, - volume = 183, - pages = {211--216}, - url = {http://dx.doi.org/10.1007/bf00007241}, - language = {English}, - doi = {10.1007/bf00007241} -} - -@Article{escartin1995flow, - title = {Flow Structure and Dispersion Within Algal Mats}, - author = {J. Escartı́n and D.g. Aubrey}, - year = 1995, - journal = {Estuarine, Coastal and Shelf Science}, - volume = 40, - pages = {451--472}, - url = {http://www.sciencedirect.com/science/article/pii/s0272771485700315}, - number = 4, - doi = {10.1006/ecss.1995.0031} -} - -@Article{everall1996use, - title = {The Use of Barley-straw to Control General and Blue-green Algal Growth in A Derbyshire Reservoir}, - author = {N.c. Everall and D.r. Lees}, - year = 1996, - journal = {Water Research}, - volume = 30, - pages = {269--276}, - url = {http://www.sciencedirect.com/science/article/pii/0043135495001921}, - number = 2, - doi = {10.1016/0043-1354(95)00192-1} -} - -@Article{everall1997identification, - title = {The Identification and Significance of Chemicals Released From Decomposing Barley Straw During Reservoir Algal Control}, - author = {N.c. Everall and D.r. Lees}, - year = 1997, - journal = {Water Research}, - volume = 31, - pages = {614--620}, - url = {http://www.sciencedirect.com/science/article/pii/s0043135496002916}, - number = 3, - doi = {10.1016/s0043-1354(96)00291-6} -} - -@Article{fadrosh2014improved, - title = {An Improved Dual-indexing Approach for Multiplexed 16s Rrna Gene Sequencing on the Illumina Miseq Platform}, - author = {Fadrosh, Douglas W. and Ma, Bing and Gajer, Pawel and Sengamalay, Naomi and Ott, Sandra and Brotman, Rebecca M. and Ravel, Jacques}, - year = 2014, - journal = {Microbiome}, - volume = 2, - pages = {1--7}, - url = {http://dx.doi.org/10.1186/2049-2618-2-6}, - number = 1, - doi = {10.1186/2049-2618-2-6} -} - -@Article{falconer1999overview, - title = {An Overview of Problems Caused by Toxic Blue-green Algae (cyanobacteria) in Drinking and Recreational Water}, - author = {Falconer, Ian R.}, - year = 1999, - journal = {Environmental Toxicology}, - publisher = {John Wiley \& Sons, Inc.}, - volume = 14, - pages = {5--12}, - url = {http://dx.doi.org/10.1002/(sici)1522-7278(199902)14:1<5::aid-tox3>3.0.co;2-0}, - number = 1, - doi = {10.1002/(sici)1522-7278(199902)14:1<5::aid-tox3>3.0.co;2-0} -} - -@Book{falconer2003cyanobacteria, - title = {Cyanobacteria-toxins in Drinking Water}, - author = {Falconer, Ian R}, - year = 2003, - publisher = {Wiley Online Library} -} - -@Article{fan2013evaluating, - title = {Evaluating the Effectiveness of Copper Sulphate, Chlorine, Potassium Permanganate, Hydrogen Peroxide and Ozone on Cyanobacterial Cell Integrity}, - author = {Jiajia Fan and Lionel Ho and Peter Hobson and Justin Brookes}, - year = 2013, - journal = {Water Research}, - volume = 47, - pages = {5153--5164}, - url = {http://www.sciencedirect.com/science/article/pii/s0043135413004892}, - number = 14, - doi = {10.1016/j.watres.2013.05.057} -} - -@Article{fan2014effects, - title = {The Effects of Various Control and Water Treatment Processes on the Membrane Integrity and Toxin Fate of Cyanobacteria}, - author = {Jiajia Fan and Peter Hobson and Lionel Ho and Robert Daly and Justin Brookes}, - year = 2014, - journal = {Journal of Hazardous Materials}, - volume = 264, - pages = {313--322}, - url = {http://www.sciencedirect.com/science/article/pii/s030438941300808x}, - number = 0, - doi = {10.1016/j.jhazmat.2013.10.059} -} - -@Article{fastner1999characterization, - title = {Characterization and Diversity of Microcystins in Natural Blooms and Strains of the Genera {{\textit{Microcystis}}} and {{\textit{Planktothrix}}} From {German} Freshwaters}, - author = {Fastner, J and Erhard, M and Carmichael, Ww and Sun, F and Rinehart, Kl and R{\"o}nicke, H and Chorus, I}, - year = 1999, - journal = {Archiv Für Hydrobiologie}, - publisher = {Schweizerbart}, - volume = 145, - pages = {147--163}, - number = 2 -} - -@Article{fendorf2010spatial, - title = {Spatial and Temporal Variations of Groundwater Arsenic in South and Southeast {Asia}}, - author = {Fendorf, Scott and Michael, Holly A. and Van Geen, Alexander}, - year = 2010, - journal = {Science}, - volume = 328, - pages = {1123--1127}, - url = {http://www.sciencemag.org/content/328/5982/1123.abstract}, - number = 5982, - doi = {10.1126/science.1172974} -} - -@Article{feng2007assessing, - title = {Assessing the Impacts of South-to-north Water Transfer Project With Decision Support Systems}, - author = {Shan Feng and Ling Xia Li and Zhi Gang Duan and Jin Long Zhang}, - year = 2007, - journal = {Decision Support Systems}, - volume = 42, - pages = {1989--2003}, - url = {http://www.sciencedirect.com/science/article/pii/s0167923604002556}, - number = 4, - note = {Decision Support Systems in Emerging Economies}, - doi = {10.1016/j.dss.2004.11.004} -} - -@Article{fergusson2000molecular, - title = {Molecular Phylogeny of {{\textit{Anabaena Circinalis}}} and Its Identification in Environmental Samples by PCR}, - author = {Fergusson, Kim M. and Saint, Christopher P.}, - year = 2000, - journal = {Applied and Environmental Microbiology}, - volume = 66, - pages = {4145--4148}, - url = {http://aem.asm.org/content/66/9/4145.abstract}, - number = 9, - doi = {10.1128/aem.66.9.4145-4148.2000} -} - -@Article{ferrier2005effects, - title = {The Effects of Barley Straw ({\it Hordeum Vulgare}) on the Growth of Freshwater Algae}, - author = {M. D. Ferrier and B. R. Butler Sr. and D. E. Terlizzi and R. V. Lacouture}, - year = 2005, - journal = {Bioresource Technology}, - volume = 96, - pages = {1788--1795}, - url = {http://www.sciencedirect.com/science/article/pii/s0960852405000726}, - number = 16, - doi = {10.1016/j.biortech.2005.01.021} -} - -@Article{feuillade1990alkaline, - title = {Alkaline Phosphatase Activity Fluctuations and Associated Factors in A Eutrophic Lake Dominated by {{\textit{Oscillatoria rubescens}}}}, - author = {Feuillade, Jacques and Feuillade, Mauricette and Blanc, Paul}, - year = 1990, - journal = {Hydrobiologia}, - publisher = {Kluwer Academic Publishers}, - volume = 207, - pages = {233--240}, - url = {http://dx.doi.org/10.1007/bf00041461}, - language = {English}, - doi = {10.1007/bf00041461} -} - -@Article{feuillade1992photosynthate, - title = {Photosynthate Partitioning in Phytoplankton Dominated by the Cyanobacterium {{\textit{Oscillatoria rubescens}}}}, - author = {Feuillade, M and Feuillade, J and Pelletier, J. P}, - year = 1992, - journal = {Archiv Für Hydrobiologie}, - url = {https://pascal-francis.inist.fr/vibad/index.php?action = getrecorddetail&idt = 4581793}, - language = {English}, - document_type = {Article}, - inist_number = 4581793 -} - -@Article{figueredo2001seasonal, - title = {Seasonal Variation in the Diversity and Species Richness of Phytoplankton in A Tropical Eutrophic Reservoir}, - author = {Figueredo, Cleberc. and Giani, Alessandra}, - year = 2001, - journal = {Hydrobiologia}, - publisher = {Kluwer Academic Publishers}, - volume = 445, - pages = {165--174}, - url = {http://dx.doi.org/10.1023/a%3a1017513731393}, - number = {1-3}, - doi = {10.1023/a:1017513731393}, - language = {English} -} - -@Article{findlay1991response, - title = {Response of A Phytoplankton Community to Controlled Partial Recovery From Experimental Acidification}, - author = {Findlay, Dl and Kasian, Sem}, - year = 1991, - journal = {Canadian Journal of Fisheries and Aquatic Sciences}, - publisher = {Nrc Research Press}, - volume = 48, - pages = {1022--1029}, - number = 6 -} - -@Article{finlay1999effects, - title = {Effects of Water Velocity on Algal Carbon Isotope Ratios: Implications for River Food Web Studies}, - author = {Finlay, Jacques C. and Power, Mary E. and Cabana, Gilbert}, - year = 1999, - journal = {Limnology and Oceanography}, - volume = 44, - pages = {1198--1203}, - url = {http://dx.doi.org/10.4319/lo.1999.44.5.1198}, - number = 5, - doi = {10.4319/lo.1999.44.5.1198} -} - -@Article{fishbein1976industrial, - title = {Industrial Mutagens and Potential Mutagens I. Halogenated Aliphatic Derivatives}, - author = {Lawrence Fishbein}, - year = 1976, - journal = {Mutation Research/reviews in Genetic Toxicology}, - volume = 32, - pages = {267--307}, - url = {http://www.sciencedirect.com/science/article/pii/0165111076900038}, - number = {3–4}, - doi = {10.1016/0165-1110(76)90003-8} -} - -@Article{fishman2010phytoplankton, - title = {Phytoplankton Community Composition of Saginaw Bay, Lake Huron, During the Zebra Mussel (dreissena Polymorpha) Invasion: A Multivariate Analysis}, - author = {Daniel B. Fishman and Sara A. Adlerstein and Henry A. Vanderploeg and Gary L. Fahnenstiel and Donald Scavia}, - year = 2010, - journal = {Journal of Great Lakes Research}, - volume = 36, - pages = {9--19}, - url = {http://www.sciencedirect.com/science/article/pii/s0380133009002159}, - number = 1, - doi = {10.1016/j.jglr.2009.10.004} -} - -@Article{fleming2002blue, - title = {Blue Green Algal (cyanobacterial) Toxins, Surface Drinking Water, and Liver Cancer in Florida}, - author = {Lora E Fleming and Carlos Rivero and John Burns and Chris Williams and Judy A Bean and Kathleen A Shea and John Stinn}, - year = 2002, - journal = {Harmful Algae}, - volume = 1, - pages = {157--168}, - url = {http://www.sciencedirect.com/science/article/pii/s1568988302000264}, - number = 2, - doi = {10.1016/s1568-9883(02)00026-4} -} - -@Article{flores2010compartmentalized, - title = {Compartmentalized Function Through Cell Differentiation in Filamentous Cyanobacteria}, - author = {Flores, Enrique and Herrero, Antonia}, - year = 2010, - journal = {Nature Reviews Microbiology}, - publisher = {Nature Publishing Group}, - volume = 8, - pages = 39, - url = {https://www.nature.com/articles/nrmicro2242}, - number = 1, - doi = {10.1038/nrmicro2242} -} - -@Article{flynn2001mechanistic, - title = {A Mechanistic Model for Describing Dynamic Multi-nutrient, Light, Temperature Interactions in Phytoplankton}, - author = {Flynn, Kevin J.}, - year = 2001, - journal = {Journal of Plankton Research}, - volume = 23, - pages = {977--997}, - url = {http://plankt.oxfordjournals.org/content/23/9/977.abstract}, - number = 9, - doi = {10.1093/plankt/23.9.977}, - eprint = {http://plankt.oxfordjournals.org/content/23/9/977.full.pdf+html} -} - -@Book{fogg1973blue, - title = {The Blue-green Algae.}, - author = {Fogg, Gordon Elliott and Stewart, Wdp and Fay, P and Walsby, Ae and Others}, - year = 1973 -} - -@Article{fonseca2008phytoplankton, - title = {Phytoplankton Seasonal Variation in A Shallow Stratified Eutrophic Reservoir ({garcas Pond}, {Brazil})}, - author = {Fonseca, Bárbara M. and Bicudo, Carlos E. De M.}, - year = 2008, - month = {Mar}, - journal = {Hydrobiologia}, - volume = 600, - pages = {267--282}, - doi = {10.1007/s10750-007-9240-9} -} - -@Article{foulds2002quantification, - title = {Quantification of Microcystin-producing Cyanobacteria and E. coli in Water by 5'-nuclease PCR}, - author = {Foulds, I.v. and Granacki, A. and Xiao, C. and Krull, U.j. and Castle, A. and Horgen, P.a.}, - year = 2002, - journal = {Journal of Applied Microbiology}, - publisher = {Blackwell Science Ltd}, - volume = 93, - pages = {825--834}, - url = {http://dx.doi.org/10.1046/j.1365-2672.2002.01772.x}, - number = 5, - doi = {10.1046/j.1365-2672.2002.01772.x} -} - -@Book{fox2011an, - title = {An {R} Companion to Applied Regression}, - author = {John Fox and Sanford Weisberg}, - year = 2011, - publisher = {Sage}, - url = {http://socserv.socsci.mcmaster.ca/jfox/books/companion}, - address = {Thousand Oaks {Ca}} -} - -@InCollection{francoeur2013wetland, - title = {Methods for Sampling and Analyzing Wetland Algae}, - author = {Francoeur, Stevenn. and Rier, Stevent. and Whorley, Sarahb.}, - year = 2013, - booktitle = {Wetland Techniques}, - publisher = {Springer Netherlands}, - pages = {1--58}, - url = {http://dx.doi.org/10.1007/978-94-007-6931-1_1}, - isbn = {978-94-007-6930-4}, - doi = {10.1007/978-94-007-6931-1_1}, - language = {English} -} - -@Article{fristachi2008occurrence, - title = {Occurrence of Cyanobacterial Harmful Algal Blooms Workgroup Report}, - author = {Fristachi, Anthony and Sinclair, James L and Hall, Sherwood and Berkman, Julie A Hambrook and Boyer, Greg and Burkholder, Joann and Burns, John and Carmichael, Wayne and Dufour, Al and Frazier, William and Others}, - year = 2008, - journal = {Cyanobacterial Harmful Algal Blooms: State of the Science and Research Needs}, - publisher = {Springer}, - pages = {45--103} -} - -@Article{frost1972effects, - title = {Effects of Size and Concentration of Food Particles on the Feeding Behavior of the Marine Planktonic Copepod {{\textit{Calanus Pacificus}}}}, - author = {Frost, B. W.}, - year = 1972, - journal = {Limnology and Oceanography}, - publisher = {Jstor}, - pages = {805--815} -} - -@Article{fujimoto1997nutrient, - title = {Nutrient-limited Growth of {{\textit{Microcystis aeruginosa}}} and {{\textit{Phormidium Tenue}}} and Competition Under Various {N:P} Supply Ratios and Temperatures}, - author = {Fujimoto, Naoshi and Sudo, Ryuichi and Sugiura, Norio and Inamori, Yuhei}, - year = 1997, - journal = {Limnology and Oceanography}, - volume = 42, - pages = {250--256}, - url = {https://aslopubs.onlinelibrary.wiley.com/doi/abs/10.4319/lo.1997.42.2.0250}, - number = 2, - doi = {10.4319/lo.1997.42.2.0250}, - eprint = {https://aslopubs.onlinelibrary.wiley.com/doi/pdf/10.4319/lo.1997.42.2.0250} -} - -@Article{fujisada2005geoscience, - title = {Aster Dem Performance}, - author = {Fujisada, H. and Bailey, G.b. and Kelly, G.g. and Hara, S. and Abrams, M.j.}, - year = 2005, - month = {Dec}, - journal = {Geoscience and Remote Sensing, Ieee Transactions On}, - volume = 43, - pages = {2707--2714}, - number = 12, - doi = {10.1109/tgrs.2005.847924} -} - -@Article{gaget2017benthic, - title = {Benthic Cyanobacteria: A Source of Cylindrospermopsin and Microcystin in {Australian} Drinking Water Reservoirs}, - author = {Virginie Gaget and Andrew R. Humpage and Qiong Huang and Paul Monis and Justin D. Brookes}, - year = 2017, - journal = {Water Research}, - volume = 124, - pages = {454--464}, - url = {http://www.sciencedirect.com/science/article/pii/s0043135417306462}, - number = {Supplement C}, - doi = {10.1016/j.watres.2017.07.073} -} - -@Article{gaget2020toolbox, - title = {Toolbox for the Sampling and Monitoring of Benthic Cyanobacteria}, - author = {Virginie Gaget and Peter Hobson and Angela Keulen and Kelly Newton and Paul Monis and Andrew R. Humpage and Laura S. Weyrich and Justin D. Brookes}, - year = 2020, - journal = {Water Research}, - volume = 169, - pages = 115222, - url = {http://www.sciencedirect.com/science/article/pii/s0043135419309960}, - doi = {10.1016/j.watres.2019.115222} -} - -@Article{gallina2017estimating, - title = {Estimating Future Cyanobacterial Occurrence and Importance in Lakes: A Case Study With {{\textit{Planktothrix rubescens}}} in {Lake Geneva}}, - author = {Gallina, Nicole and Beniston, Martin and Jacquet, St{\'e}phan}, - year = 2017, - month = {Apr}, - journal = {Aquatic Sciences}, - volume = 79, - pages = {249--263}, - url = {https://doi.org/10.1007/s00027-016-0494-z}, - number = 2, - doi = {10.1007/s00027-016-0494-z} -} - -@Article{gao2004shui, - title = {水库颤藻水华监测及研究}, - author = {高丽 and 许红梅 and 侯伟升 and 邓学跃}, - year = 2004, - journal = {沧州师范专科学校学报}, - volume = 20, - pages = {49--50}, - number = 2, - language = {Zh} -} - -@Article{gao2012mi, - title = {密云水库调蓄南水北调来水面临的问题与对策}, - author = {高训宇 and 郝丽娟 and 罗阳春}, - year = 2013, - journal = {北京水务}, - volume = 2013, - pages = {56--59}, - number = 6, - language = {Zh} -} - -@Article{gao2012miyun, - title = {Problems and Strategies of {Miyun Reservoir} in {the South-to-North Water Diversion Project}}, - author = {Gao, Xunyu and Hao, Lijuan and Luo, Yangchun}, - year = 2013, - journal = {Beijing Water}, - volume = 2013, - pages = {56--59}, - number = 6 -} - -@Article{gao2013problems, - title = {Problems and Strategies of {{miyun}} Reservoir in {the South-to-North Water Diversion Project}}, - author = {Gao, X and Hao, L and Luo, Y}, - year = 2013, - month = jan, - journal = {Beijing Water}, - volume = 2013, - pages = {56--59} -} - -@Article{garciavillada2004occurrence, - title = {Occurrence of Copper Resistant Mutants in the Toxic Cyanobacteria {{\textit{Microcystis aeruginosa}}}: Characterisation and Future Implications in the Use of Copper Sulphate As Algaecide}, - author = {Libertad Garc{\'i}a-villada and Marcos Rico and Mar{\'i}a Altamirano and Laura S{\'a}nchez-mart{\'i}n and Victoria L{\'o}pez-rodas and Eduardo Costas}, - year = 2004, - journal = {Water Research}, - volume = 38, - pages = {2207--2213}, - url = {http://www.sciencedirect.com/science/article/pii/s0043135404000600}, - number = 8, - doi = {10.1016/j.watres.2004.01.036} -} - -@Article{gasiunaite2005seasonality, - title = {Seasonality of Coastal Phytoplankton in the {Baltic Sea}: Influence of Salinity and Eutrophication}, - author = {Z.r. Gasi\-{u}nait\.{e} and A.c. Cardoso and A.-s. Heiskanen and P. Henriksen and P. Kauppila and I. Olenina and R. Pilkaitytė and I. Purina and A. Razinkovas and S. Sagert and H. Schubert and N. Wasmund}, - year = 2005, - journal = {Estuarine, Coastal and Shelf Science}, - volume = 65, - pages = {239--252}, - url = {http://www.sciencedirect.com/science/article/pii/s0272771405002003}, - number = {1–2}, - doi = {10.1016/j.ecss.2005.05.018} -} - -@InCollection{gassara2012environmental, - title = {Trends in Biological Degradation of Cyanobacteria and Toxins}, - author = {Gassara, Fatma and Brar, Satinderk. and Tyagi, R. D. and Surampalli, R. Y.}, - year = 2012, - booktitle = {Environmental Protection Strategies for Sustainable Development}, - publisher = {Springer Netherlands}, - pages = {261--294}, - url = {http://dx.doi.org/10.1007/978-94-007-1591-2_8}, - isbn = {978-94-007-1590-5}, - doi = {10.1007/978-94-007-1591-2_8}, - language = {English} -} - -@Article{gelda2009turbidity, - title = {Turbidity Model for {Ashokan Reservoir}, {New York}: Case Study}, - author = {Rakesh K. Gelda and Steven W. Effler and Feng Peng and Emmet M. Owens and Donald C. Pierson}, - year = 2009, - journal = {Journal of Environmental Engineering}, - volume = 135, - pages = {885--895}, - url = {https://ascelibrary.org/doi/abs/10.1061/%28asce%29ee.1943-7870.0000048}, - number = 9, - doi = {10.1061/(asce)ee.1943-7870.0000048}, - eprint = {https://ascelibrary.org/doi/pdf/10.1061/%28asce%29ee.1943-7870.0000048} -} - -@Article{genovese2009simulation, - title = {Simulation of Retronasal Aroma of White and Red Wine in A Model Mouth System. Investigating the Influence of Saliva on Volatile Compound Concentrations}, - author = {Alessandro Genovese and Paola Piombino and Angelita Gambuti and Luigi Moio}, - year = 2009, - journal = {Food Chemistry}, - volume = 114, - pages = {100--107}, - url = {http://www.sciencedirect.com/science/article/pii/s0308814608010959}, - number = 1, - doi = {10.1016/j.foodchem.2008.09.022} -} - -@Article{george2004influence, - title = {The Influence of Sampling Frequency on the Detection of Long-term Change in Three Lakes in the English {Lake District}}, - author = {George, D. G. and Hurley, M. A.}, - year = 2004, - journal = {Aquatic Ecosystem Health \& Management}, - volume = 7, - pages = {1--14}, - url = {http://www.tandfonline.com/doi/abs/10.1080/14634980490281164}, - number = 1, - doi = {10.1080/14634980490281164}, - eprint = {http://www.tandfonline.com/doi/pdf/10.1080/14634980490281164} -} - -@Article{geraldes2005seasonal, - title = {Seasonal Water Level Fluctuations: Implications for Reservoir Limnology and Management}, - author = {Geraldes, Ana Maria and Boavida, Maria-jos{\'e}}, - year = 2005, - journal = {Lakes \& Reservoirs: Research \& Management}, - publisher = {Blackwell Publishing Asia Pty Ltd}, - volume = 10, - pages = {59--69}, - url = {http://dx.doi.org/10.1111/j.1440-1770.2005.00257.x}, - number = 1, - doi = {10.1111/j.1440-1770.2005.00257.x} -} - -@InBook{gerard2007overview, - title = {An Overview of Counting Methods of Algae}, - author = {Bowe, Gerard}, - year = 2007, - booktitle = {Water Quality Measurements Series}, - publisher = {John Wiley \& Sons, Ltd.}, - pages = {71--82}, - url = {http://dx.doi.org/10.1002/9780470511107.ch4}, - isbn = 9780470511107, - doi = {10.1002/9780470511107.ch4} -} - -@Article{gerber1965geosmin, - title = {Geosmin, An Earthy-smelling Substance Isolated From Actinomycetes}, - author = {Gerber, N. N. and Lechevalier, H. A.}, - year = 1965, - journal = {Applied Microbiology}, - volume = 13, - pages = {935--938}, - url = {http://aem.asm.org/content/13/6/935.abstract}, - number = 6 -} - -@Article{gerber1979volatile, - title = {Volatile {{Substances}} From {{Actinomycetes}}: {{Their Role}} in the {{Odor Pollution}} of {{Water}}}, - author = {Gerber, Nancy N.}, - year = 1979, - month = jan, - journal = {CRC Critical Reviews in Microbiology}, - volume = 7, - pages = {191--214}, - shorttitle = {Volatile {{Substances}} From {{Actinomycetes}}}, - number = 3, - doi = {10.3109/10408417909082014} -} - -@Article{giglio2008isolation, - title = {Isolation and Characterization of the Gene Associated With Geosmin Production in Cyanobacteria}, - author = {Steven Giglio and Jiang, Jiaoyang and Saint, Christopher P. Saint and Cane, David E. and Monis, Paul T.}, - year = 2008, - journal = {Environmental Science \& Technology}, - volume = 42, - pages = {8027--8032}, - url = {http://pubs.acs.org/doi/abs/10.1021/es801465w}, - number = 21, - doi = {10.1021/es801465w}, - eprint = {http://pubs.acs.org/doi/pdf/10.1021/es801465w} -} - -@Article{giglio2011biosynthesis, - title = {Biosynthesis of 2-methylisoborneol in Cyanobacteria}, - author = {Giglio, S. and Chou, W. K. W. and Ikeda, H. and Cane, D. E. and Monis, P. T.}, - year = 2011, - journal = {Environmental Science \& Technology}, - volume = 45, - pages = {992--998}, - number = 3, - doi = {10.1021/es102992p}, - eprint = {http://pubs.acs.org/doi/pdf/10.1021/es102992p} -} - -@Article{giglio2011expression, - title = {Expression of the {{\textit{Geosmin Synthase}}} Gene in the Cyanobacterium {{\textit{Anabaena Circinalis}}} {AWQC318}}, - author = {Giglio, Steven and Saint, Christopher P. and Monis, Paul T.}, - year = 2011, - journal = {Journal of Phycology}, - publisher = {Blackwell Publishing Ltd}, - volume = 47, - pages = {1338--1343}, - url = {http://dx.doi.org/10.1111/j.1529-8817.2011.01061.x}, - number = 6, - doi = {10.1111/j.1529-8817.2011.01061.x} -} - -@PhDThesis{gill2006molecular, - title = {Molecular Characterization of Potential Geosmin-producing Cyanobacteria From Lake Ontario}, - author = {Andrea Gill}, - year = 2006, - school = {University of Waterloo} -} - -@Article{ginzburg1998identification, - title = {Identification of Oligosulfide Odorous Compounds and Their Source in the Lake of {Galilee}}, - author = {B. Ginzburg and I. Chalifa and T. Zohary and O. Hadas and I. Dor and O. Lev}, - year = 1998, - journal = {Water Research}, - volume = 32, - pages = {1789--1800}, - url = {http://www.sciencedirect.com/science/article/pii/s0043135497003965}, - number = 6, - doi = {10.1016/s0043-1354(97)00396-5} -} - -@Article{gobler2011niche, - title = {Niche of Harmful Alga Aureococcus Anophagefferens Revealed Through Ecogenomics}, - author = {Gobler, Christopher J. and Berry, Dianna L. and Dyhrman, Sonya T. and Wilhelm, Steven W. and Salamov, Asaf and Lobanov, Alexei V. and Zhang, Yan and Collier, Jackie L. and Wurch, Louie L. and Kustka, Adam B. and Dill, Brian D. and Shah, Manesh and Verberkmoes, Nathan C. and Kuo, Alan and Terry, Astrid and Pangilinan, Jasmyn and Lindquist, Erika A. and Lucas, Susan and Paulsen, Ian T. and Hattenrath-lehmann, Theresa K. and Talmage, Stephanie C. and Walker, Elyse A. and Koch}, - year = 2011, - journal = {Proceedings of the National Academy of Sciences}, - volume = 108, - pages = {4352--4357}, - url = {http://www.pnas.org/content/108/11/4352.abstract}, - number = 11, - doi = {10.1073/pnas.1016106108} -} - -@Article{godo2011detection, - title = {Detection of Geosmin From Coelosphaerium Kuetzingianum Separated by A Step Density Gradient Medium From Suspended Materials in Water in {Lake Shinji}, {Japan}}, - author = {Godo, Toshiyuki and Ohtani, Shuji and Saki, Yukiko and Ishitobi, Yu}, - year = 2011, - journal = {Limnology}, - publisher = {Springer}, - volume = 12, - pages = {253--260}, - url = {https://link.springer.com/article/10.1007/s10201-011-0344-6}, - number = 3, - doi = {10.1007/s10201-011-0344-6} -} - -@Article{graham2010cyanotoxin, - title = {Cyanotoxin Mixtures and Taste-and-odor Compounds in Cyanobacterial Blooms From {the Midwestern United States}}, - author = {Graham, Jennifer L. and Loftin, Keith A. and Meyer, Michael T. and Ziegler, Andrew C.}, - year = 2010, - journal = {Environmental Science \& Technology}, - volume = 44, - pages = {7361--7368}, - url = {http://pubs.acs.org/doi/abs/10.1021/es1008938}, - number = 19, - doi = {10.1021/es1008938}, - eprint = {http://pubs.acs.org/doi/pdf/10.1021/es1008938} -} - -@InCollection{grime1988csr, - title = {The Csr Model of Primary Plant Strategies--origins, Implications and Tests}, - author = {Grime, J Philip}, - year = 1988, - booktitle = {Plant Evolutionary Biology}, - publisher = {Springer}, - pages = {371--393} -} - -@Article{grinnell1917field, - title = {Field Tests of Theories Concerning Distributional Control}, - author = {Grinnell, Joseph}, - year = 1917, - journal = {American Naturalist}, - publisher = {Jstor}, - pages = {115--128} -} - -@Article{grinnell1917niche, - title = {The Niche-relationships of the California Thrasher}, - author = {Grinnell, Joseph}, - year = 1917, - journal = {The Auk}, - publisher = {Jstor}, - volume = 34, - pages = {427--433}, - number = 4 -} - -@Article{grover2011spatial, - title = {Spatial Variation of Harmful Algae and Their Toxins in Flowing-water Habitats: A Theoretical Exploration}, - author = {Grover, James P. and Crane, Kenneth W. and Baker, Jason W. and Brooks, Bryan W. and Roelke, Daniel L.}, - year = 2011, - journal = {Journal of Plankton Research}, - volume = 33, - pages = {211--227}, - url = {http://plankt.oxfordjournals.org/content/33/2/211.abstract}, - number = 2, - doi = {10.1093/plankt/fbq070}, - eprint = {http://plankt.oxfordjournals.org/content/33/2/211.full.pdf+html} -} - -@PhDThesis{gu2015tai, - title = {太湖浮游蓝藻和水体DOM的特征研究}, - author = {古依露 and 李仁辉}, - school = {中国科学院大学}, - year = 2015 -} - -@Misc{guiry2020algae, - title = {Algaebase}, - author = {M.d. Guiry in Guiry, M.d Guiry, G.m.}, - year = 2020, - journal = {Algaebase}, - url = {http://www.algaebase.org} -} - -@Article{guisan2000predictive, - title = {Predictive Habitat Distribution Models in Ecology}, - author = {Antoine Guisan and Niklaus E. Zimmermann}, - year = 2000, - journal = {Ecological Modelling}, - volume = 135, - pages = {147--186}, - url = {http://www.sciencedirect.com/science/article/pii/s0304380000003549}, - number = {2–3}, - doi = {10.1016/s0304-3800(00)00354-9} -} - -@Article{guisan2005predicting, - title = {Predicting Species Distribution: Offering More Than Simple Habitat Models}, - author = {Guisan, Antoine and Thuiller, Wilfried}, - year = 2005, - journal = {Ecology Letters}, - publisher = {Blackwell Science Ltd}, - volume = 8, - pages = {993--1009}, - url = {http://dx.doi.org/10.1111/j.1461-0248.2005.00792.x}, - number = 9, - doi = {10.1111/j.1461-0248.2005.00792.x} -} - -@Article{guo2015comprehensive, - title = {Comprehensive Two-dimensional Gas Chromatography With Time-of-flight Mass Spectrometry for the Screening of Potent Swampy/septic Odor-causing Compounds in Two Drinking Water Sources in {China}}, - author = {Guo, Qingyuan and Li, Xia and Yu, Jianwei and Zhang, Haifeng and Zhang, Yu and Yang, Min and Lu, Ning and Zhang, Dong}, - year = 2015, - journal = {Anal. Methods}, - publisher = {The Royal Society of Chemistry}, - volume = 7, - pages = {2458--2468}, - url = {http://dx.doi.org/10.1039/c4ay03026e}, - doi = {10.1039/c4ay03026e} -} - -@Article{guo2019synergistic, - title = {Synergistic Effect of Musty Odorants on Septic Odor: Verification in Huangpu River Source Water}, - author = {Qingyuan Guo and Jianwei Yu and Ming Su and Chunmiao Wang and Min Yang and Nan Cao and Yu Zhao and Ping Xia}, - year = 2019, - journal = {Science of the Total Environment}, - volume = 653, - pages = {1186--1191}, - url = {http://www.sciencedirect.com/science/article/pii/s0048969718344176}, - doi = {10.1016/j.scitotenv.2018.11.062}, - other = {author3} -} - -@Article{guo2020systematic, - title = {A Systematic Study on the Odorants Characterization and Evaluation in A Plain Reservoir With Wetlands Ecosystem}, - author = {Qingyuan Guo and Jianwei Yu and Xuan Li and Tianming Chen and Chunmiao Wang and Zhaoxia Li and Weixing Ma and Cheng Ding and Min Yang}, - year = 2020, - journal = {Journal of Hazardous Materials}, - pages = 122404, - url = {http://www.sciencedirect.com/science/article/pii/s0304389420303927}, - doi = {10.1016/j.jhazmat.2020.122404} -} - -@Article{gust2003pcr, - title = {PCR-targeted {{\textit{Streptomyces}}} Gene Replacement Identifies A Protein Domain Needed for Biosynthesis of the Sesquiterpene Soil Odor Geosmin}, - author = {Gust, Bertolt and Challis, Greg L. and Fowler, Kay and Kieser, Tobias and Chater, Keith F.}, - year = 2003, - journal = {Proceedings of the National Academy of Sciences}, - volume = 100, - pages = {1541--1546}, - number = 4, - doi = {10.1073/pnas.0337542100} -} - -@Article{haan2013fast, - title = {Fast Detection of Nutrient Limitation in Macroalgae and Seagrass With Nutrient-induced Fluorescence}, - author = {Haan, Joost Den and Huisman,jef and Dekker, Friso and Ten Brinke, Jacomina L. and Ford, Amanda K. and Van Ooijen, Jan and Van Duyl, Fleur C. and Vermeij, Mark J. A. and Visser, Petra M.}, - year = 2013, - month = 07, - journal = {Plos One}, - publisher = {Public Library of Science}, - volume = 8, - pages = {E68834}, - url = {http://dx.doi.org/10.1371%2fjournal.pone.0068834}, - number = 7, - doi = {10.1371/journal.pone.0068834} -} - -@Article{haas1996neorhabdocoela, - title = {{\textit{Neorhabdocoela~oocytes}} - Palaeoecological Indicators Found in Pollen Preparations From Holocene Freshwater Lake Sediments}, - author = {Jean Nicolas Haas}, - year = 1996, - journal = {Review of Palaeobotany and Palynology}, - volume = 91, - pages = {371--382}, - url = {http://www.sciencedirect.com/science/article/pii/0034666795000747}, - number = {1--4}, - doi = {10.1016/0034-6667(95)00074-7} -} - -@Article{habib1997seasonal, - title = {Seasonal Changes in Phytoplankton Community Structure in Relation to Physico-chemical Factors in Loch Lomond, Scotland}, - author = {Habib, O.a. and Tippett, R. and Murphy, K.j.}, - year = 1997, - journal = {Hydrobiologia}, - publisher = {Kluwer Academic Publishers}, - volume = 350, - pages = {63--79}, - url = {http://dx.doi.org/10.1023/a%3a1003037012226}, - number = {1-3}, - doi = {10.1023/a:1003037012226}, - language = {English} -} - -@Book{wickham2016ggplot, - title = {{ggplot2}: Elegant Graphics for Data Analysis}, - author = {Hadley Wickham}, - year = 2016, - publisher = {Springer-verlag New York}, - url = {http://ggplot2.org}, - isbn = {978-3-319-24277-4} -} - -@Manual{hadley2018dplyr, - title = {{dplyr}: A Grammar of Data Manipulation}, - author = {Hadley Wickham and Romain François and Lionel Henry and Kirill Müller}, - year = 2018, - url = {https://cran.r-project.org/package=dplyr}, - note = {R Package Version 0.7.8} -} - -@InCollection{hajnal2008european, - title = {Analysis of Long-term Ecological Status of Lake Balaton Based on the Almobal Phytoplankton Database}, - author = {Hajnal, {\'e}va and Padis{\'a}k, Judit}, - year = 2008, - booktitle = {European Large Lakes Ecosystem Changes and Their Ecological and Socioeconomic Impacts}, - publisher = {Springer Netherlands}, - volume = 199, - pages = {227--237}, - language = {English}, - isbn = {978-1-4020-8378-5}, - doi = {10.1007/978-1-4020-8379-2_27} -} - -@Misc{halir1998numerically, - title = {Numerically Stable Direct Least Squares Fitting of Ellipses}, - author = {Radim Halir and Jan Flusser}, - year = 1998 -} - -@InCollection{hall2015conjugating, - title = {Chapter 9 - Conjugating Green Algae Including Desmids}, - author = {John D. Hall and Richard M. Mccourt}, - year = 2015, - booktitle = {Freshwater Algae of North America (second Edition)}, - publisher = {Academic Press}, - pages = {429--457}, - url = {http://www.sciencedirect.com/science/article/pii/b9780123858764000098}, - address = {Boston}, - isbn = {978-0-12-385876-4}, - doi = {10.1016/b978-0-12-385876-4.00009-8} -} - -@Article{hallegraeff1993review, - title = {A Review of Harmful Algal Blooms and Their Apparent Global Increase}, - author = {Hallegraeff, G. M.}, - year = 1993, - month = {Mar}, - journal = {Phycologia}, - publisher = {The International Phycological Society}, - volume = 32, - pages = {79--99}, - url = {http://dx.doi.org/10.2216/i0031-8884-32-2-79.1}, - number = 2, - doi = {10.2216/i0031-8884-32-2-79.1} -} - -@Article{halstvedt2007seasonal, - title = {Seasonal Dynamics and Depth Distribution of {{\textit{Planktothrix}}} spp. in {Lake Steinsfjorden (Norway)} Related to Environmental Factors}, - author = {Halstvedt, Camilla Blikstad and Rohrlack, Thomas and Andersen, Tom and Skulberg, Olav and Edvardsen, Bente}, - year = 2007, - journal = {Journal of Plankton Research}, - volume = 29, - pages = {471--482}, - url = {http://plankt.oxfordjournals.org/content/29/5/471.abstract}, - number = 5, - doi = {10.1093/plankt/fbm036}, - eprint = {http://plankt.oxfordjournals.org/content/29/5/471.full.pdf+html} -} - -@Article{hamed2003phytoplankton, - title = {Phytoplankton and Benthic Communities of A Small Water Body (sacred Lake, Karnak Temple) Luxor, Egypt}, - author = {Hamed, Af and Shafik, Hm and Shaaban, As}, - year = 2003, - journal = {Acta Botanica Hungarica}, - publisher = {Akad{\'e}miai Kiad{\'o}}, - volume = 45, - pages = {101--112}, - url = {http://www.akademiai.com/content/r7x2mu223192707w}, - number = 1 -} - -@Article{hampel2019ammonium, - title = {Ammonium Recycling Supports Toxic {{\textit{Planktothrix}}} Blooms in {Sandusky Bay}, {Lake Erie}: Evidence From Stable Isotope and Metatranscriptome Data}, - author = {Justyna J. Hampel and Mark J. Mccarthy and Michelle Neudeck and George S. Bullerjahn and Robert Michael L. Mckay and Silvia E. Newell}, - year = 2019, - journal = {Harmful Algae}, - volume = 81, - pages = {42--52}, - url = {http://www.sciencedirect.com/science/article/pii/s1568988318301720}, - doi = {10.1016/j.hal.2018.11.011} -} - -@Article{han2002mechanistic, - title = {A Mechanistic Model of Algal Photoinhibition Induced by Photodamage to Photosystem-ii}, - author = {Han, B P}, - year = 2002, - journal = {Journal of Theoretical Biology}, - volume = 214, - pages = {519--527}, - number = 4 -} - -@Article{han2010zhong, - title = {中国水库生态学研究的回顾与展望}, - author = {韩博平}, - year = 2010, - journal = {湖泊科学}, - volume = 22, - pages = {151--160}, - number = 2, - language = {Zh} -} - -@Article{han2013evaluation, - title = {Evaluation of Trace Metals Bioavailability in Japanese River Waters Using Dgt and A Chemical Equilibrium Model}, - author = {Shuping Han and Wataru Naito and Yoshimichi Hanai and Shigeki Masunaga}, - year = 2013, - journal = {Water Research}, - volume = 47, - pages = {4880--4892}, - url = {http://www.sciencedirect.com/science/article/pii/s0043135413004338}, - number = 14, - doi = {10.1016/j.watres.2013.05.025} -} - -@Article{hansen1980single, - title = {Single-nutrient Microbial Competition: Qualitative Agreement Between Experimental and Theoretically Forecast Outcomes}, - author = {Hansen and Hubbell, Sp}, - year = 1980, - journal = {Science}, - volume = 207, - pages = {1491--1493}, - url = {http://www.sciencemag.org/content/207/4438/1491.abstract}, - number = 4438, - doi = {10.1126/science.6767274} -} - -@Article{hardin1960competitive, - title = {The Competitive Exclusion Principle}, - author = {Hardin, Garrett}, - year = 1960, - journal = {Science}, - publisher = {American Association for the Advancement of Science}, - volume = 131, - pages = {1292--1297}, - url = {http://science.sciencemag.org/content/131/3409/1292}, - number = 3409, - doi = {10.1126/science.131.3409.1292} -} - -@Book{harris1989chlamydomonas, - title = {The Chlamydomonas Sourcebook}, - author = {Harris, Elizabeth H. and Stern, David B. and Witman, George B.}, - year = 1989, - publisher = {Cambridge Univ Press}, - isbn = {978-0-12-370873-1} -} - -@Article{hasegawa2010seasonal, - title = {Seasonal Changes of Arsenic Speciation in Lake Waters in Relation to Eutrophication}, - author = {H. Hasegawa and M. Azizur Rahman and K. Kitahara and Y. Itaya and T. Maki and K. Ueda}, - year = 2010, - journal = {Science of the Total Environment}, - volume = 408, - pages = {1684--1690}, - url = {http://www.sciencedirect.com/science/article/pii/s0048969709011772}, - number = 7, - doi = {10.1016/j.scitotenv.2009.11.062} -} - -@Article{hasle1978inverted, - title = {The Inverted Microscope Method}, - author = {Hasle, Gr}, - year = 1978, - journal = {Phytoplankton Manual. Unesco, Paris}, - pages = {88--96} -} - -@Book{hasle1978sournia, - title = {A. Sournia (ed) Phytoplankton Manual}, - author = {Hasle, G. R.}, - year = 1978, - journal = {Diatom}, - publisher = {Unesco (paris)} -} - -@Article{hassan2012effects, - title = {Effects of Shear and Surface Roughness on Reducing the Attachment of {{\textit{Oscillatoria}}} sp.~filaments on Substrates}, - author = {Hassan, Muhammad Fadzli and Lee, Heow Pueh and Lim, Siak Piang}, - year = 2012, - journal = {Water Environment Research}, - volume = 84, - pages = {744--752}, - url = {http://www.ingentaconnect.com/content/wef/wer/2012/00000084/00000009/art00007}, - number = 9, - doi = {10.2175/106143012x13407275694635} -} - -@Book{hastie1990generalized, - title = {Generalized Additive Models}, - author = {Hastie, Trevor J and Tibshirani, Robert J}, - year = 1990, - publisher = {Crc Press}, - volume = 43 -} - -@Article{hatvani2011analysis, - title = {Analysis of Long-term Water Quality Changes in the Kis-balaton Water Protection System With Time Series-, Cluster Analysis and Wilks?? Lambda Distribution}, - author = {Istv{\'a}n G{\'a}bor Hatvani and J{\'o}zsef Kov{\'a}cs and Ilona Sz{\'e}kely Kov{\'a}cs and P{\'a}l Jakusch and J{\'a}nos Korponai}, - year = 2011, - journal = {Ecological Engineering}, - volume = 37, - pages = {629--635}, - url = {http://www.sciencedirect.com/science/article/pii/s0925857411000115}, - number = 4, - doi = {10.1016/j.ecoleng.2010.12.028} -} - -@Article{hauer2007image, - title = {Image Analysis - A Simple Method of Algal Culture Growth Assessment}, - author = {Hauer, Tom{\'a}{\vs} and Jirka, Luk{\'a}{\vs}}, - year = 2007, - journal = {Journal of Applied Phycology}, - publisher = {Springer Netherlands}, - volume = 19, - pages = {599--601}, - url = {http://dx.doi.org/10.1007/s10811-007-9154-y}, - number = 5, - doi = {10.1007/s10811-007-9154-y}, - language = {English} -} - -@Article{hautier2009competition, - title = {Competition for Light Causes Plant Biodiversity Loss After Eutrophication}, - author = {Hautier, Yann and Niklaus, Pascal A and Hector, Andy}, - year = 2009, - journal = {Science}, - publisher = {American Association for the Advancement of Science}, - volume = 324, - pages = {636--638}, - number = 5927 -} - -@Article{havens1998light, - title = {Light Availability As A Possible Regulator of Cyanobacteria Species Composition in A Shallow Subtropical Lake}, - author = {Havens, Karl E. and Phlips, Edward J. and Cichra, Mary F. and Li, Bai-lian}, - year = 1998, - journal = {Freshwater Biology}, - publisher = {Blackwell Science Ltd, Uk}, - volume = 39, - pages = {547--556}, - url = {http://dx.doi.org/10.1046/j.1365-2427.1998.00308.x}, - number = 3, - doi = {10.1046/j.1365-2427.1998.00308.x} -} - -@Article{havens2003np, - title = {N:p Ratios, Light Limitation, and Cyanobacterial Dominance in A Subtropical Lake Impacted by Non-point Source Nutrient Pollution}, - author = {Karl E. Havens and R.thomas James and Therese L. East and Val H. Smith}, - year = 2003, - journal = {Environmental Pollution}, - volume = 122, - pages = {379--390}, - url = {http://www.sciencedirect.com/science/article/pii/s0269749102003044}, - number = 3, - doi = {10.1016/s0269-7491(02)00304-4} -} - -@Article{hawkins1985severe, - title = {Severe Hepatotoxicity Caused by the Tropical Cyanobacterium (blue-green Alga) Cylindrospermopsis Raciborskii (woloszynska) Seenaya and Subba Raju Isolated From A Domestic Water Supply Reservoir.}, - author = {Hawkins, P R and Runnegar, M T and Jackson, A R and Falconer, I R}, - year = 1985, - journal = {Applied and Environmental Microbiology}, - volume = 50, - pages = {1292--1295}, - url = {http://aem.asm.org/content/50/5/1292.abstract}, - number = 5 -} - -@Article{hawkins2005change, - title = {Change in Cyanobacterial Biovolume Due to Preservation by Lugol's Iodine}, - author = {Peter R. Hawkins and Jon Holliday and Amrit Kathuria and Lee Bowling}, - year = 2005, - journal = {Harmful Algae}, - volume = 4, - pages = {1033--1043}, - url = {http://www.sciencedirect.com/science/article/pii/s1568988305000405}, - number = 6, - doi = {10.1016/j.hal.2005.03.001} -} - -@Article{hayes1989odorous, - title = {Odorous Compounds Associated With Algal Blooms in South Australian Waters}, - author = {Keith P. Hayes and Michael D. Burch}, - year = 1989, - journal = {Water Research}, - volume = 23, - pages = {115--121}, - url = {http://www.sciencedirect.com/science/article/pii/0043135489900699}, - number = 1, - doi = {10.1016/0043-1354(89)90069-9} -} - -@Article{hecky1988nutrient, - title = {Nutrient Limitation of Phytoplankton in Freshwater and Marine Environments: A Review of Recent Evidence on the Effects of Enrichment.}, - author = {Hecky, Re and Kilham, P}, - year = 1988, - journal = {Limnology and Oceanography}, - volume = 33, - pages = {796--822}, - number = 4 -} - -@Article{hein1995size, - title = {Size-dependent Nitrogen Uptake in Micro-and Macroalgae}, - author = {Hein, M. and Pedersen, M. F. and Sand-jensen, K.}, - year = 1995, - journal = {Marine Ecology Progress Series}, - volume = 118, - pages = {247--253}, - number = 1 -} - -@Article{henne2013seasonal, - title = {Seasonal Dynamics of Bacterial Community Structure and Composition in Cold and Hot Drinking Water Derived From Surface Water Reservoirs}, - author = {Karsten Henne and Leila Kahlisch and Manfred G. H{\"o}fle and Ingrid Brettar}, - year = 2013, - journal = {Water Research}, - volume = 47, - pages = {5614--5630}, - url = {http://www.sciencedirect.com/science/article/pii/s0043135413005253}, - number = 15, - doi = {10.1016/j.watres.2013.06.034} -} - -@Article{herlemann2011transitions, - title = {Transitions in Bacterial Communities Along the 2000 Km Salinity Gradient of the {Baltic Sea}}, - author = {Daniel Pr Herlemann and Matthias Labrenz and Klaus Jürgens and Stefan Bertilsson and Joanna J Waniek and Anders F Andersson}, - year = 2011, - journal = {The Isme Journal}, - volume = 5, - pages = {1571--1579}, - number = 10 -} - -@Article{hernandez2009microcystins, - title = {Microcystins From Tap Water Could Be A Risk Factor for Liver and Colorectal Cancer: A Risk Intensified by Global Change}, - author = {Juan Mart{\'i}nez Hern{\'a}ndez and V. L{\'o}pez-rodas and E. Costas}, - year = 2009, - journal = {Medical Hypotheses}, - volume = 72, - pages = {539--540}, - url = {http://www.sciencedirect.com/science/article/pii/s0306987709000280}, - number = 5, - doi = {10.1016/j.mehy.2008.11.041} -} - -@Article{herrero2016multicellular, - title = {The Multicellular Nature of Filamentous Heterocyst-forming Cyanobacteria}, - author = {Herrero, Antonia and Stavans, Joel and Flores, Enrique}, - year = 2016, - journal = {Fems Microbiology Reviews}, - volume = 40, - pages = {831--854}, - url = {http://dx.doi.org/10.1093/femsre/fuw029}, - number = 6, - doi = {10.1093/femsre/fuw029} -} - -@Article{herrmann1977excretion, - title = {Excretion Products of Algae: Identification of Biogenic Amines by Gas-liquid Chromatography and Mass Spectrometry of Their Trifluoroacetamides}, - author = {V. Herrmann and F. Jüttner}, - year = 1977, - journal = {Analytical Biochemistry}, - volume = 78, - pages = {365--373}, - url = {http://www.sciencedirect.com/science/article/pii/0003269777900987}, - number = 2, - doi = {10.1016/0003-2697(77)90098-7} -} - -@Article{herry2008seasonal, - title = {Seasonal Occurrence and Toxicity of {{\textit{Microcystis}}} spp.~and {{\textit{Oscillatoria tenuis}}} in the Lebna Dam, Tunisia}, - author = {Soumaya El Herry and Afef Fathalli and Amel Jenhani-ben Rejeb and Noureddine Boua{\"i}cha}, - year = 2008, - volume = 42, - journal = {Water Research}, - pages = {1263--1273}, - url = {http://www.sciencedirect.com/science/article/pii/s0043135407006227}, - number = {4--5}, - doi = {10.1016/j.watres.2007.09.019} -} - -@InCollection{herschy2012world, - title = {World Lake Database: International Lake Environment Committee Foundation (ilec)}, - author = {Herschy, Reginald W.}, - year = 2012, - booktitle = {Encyclopedia of Lakes and Reservoirs}, - publisher = {Springer Netherlands}, - pages = {920--921}, - url = {http://dx.doi.org/10.1007/978-1-4020-4410-6_188}, - address = {Dordrecht}, - isbn = {978-1-4020-4410-6}, - doi = {10.1007/978-1-4020-4410-6_188} -} - -@Article{hijnen2007removal, - title = {Removal and Fate of {{\textit{Cryptosporidium Parvum}}}, {{\textit{Clostridium Perfringens}}} and Small-sized Centric Diatoms ({\textit{Stephanodiscus Hantzschii}}) in Slow Sand Filters}, - author = {Wim A.m. Hijnen and Yolanda J. Dullemont and Jack F. Schijven and Anke J. Hanzens-brouwer and Martine Rosielle and Gertjan Medema}, - year = 2007, - journal = {Water Research}, - volume = 41, - pages = {2151--2162}, - url = {http://www.sciencedirect.com/science/article/pii/s004313540700098x}, - number = 10, - doi = {10.1016/j.watres.2007.01.056} -} - -@Article{hill1995light, - title = {Light Limitation in A Stream Ecosystem: Responses by Primary Producers and Consumers}, - author = {Hill, Walter R. and Ryon, Michael G. and Schilling, Elizabeth M.}, - year = 1995, - month = {Jun}, - journal = {Ecology}, - publisher = {Ecological Society of America}, - volume = 76, - pages = {1297--1309}, - url = {http://dx.doi.org/10.2307/1940936}, - number = 4, - doi = {10.2307/1940936} -} - -@Article{hillebrand1999biovolume, - title = {Biovolume Calculation for Pelagic and Benthic Microalgae}, - author = {Hillebrand, Helmut and Dürselen, Claus-dieter and Kirschtel, David and Pollingher, Utsa and Zohary, Tamar}, - year = 1999, - journal = {Journal of Phycology}, - publisher = {Blackwell Publishing Ltd}, - volume = 35, - pages = {403--424}, - url = {http://dx.doi.org/10.1046/j.1529-8817.1999.3520403.x}, - number = 2, - doi = {10.1046/j.1529-8817.1999.3520403.x} -} - -@Article{hirzel2002ecological, - title = {Ecological-niche Factor Analysis: How to Compute Habitat-suitability Maps Without Absence Data?}, - author = {Hirzel, A. H. and Hausser, J. and Chessel, D. and Perrin, N.}, - year = 2002, - month = {Jul}, - journal = {Ecology}, - publisher = {Ecological Society of America}, - volume = 83, - pages = {2027--2036}, - url = {http://dx.doi.org/10.1890/0012-9658(2002)083[2027:enfaht]2.0.co;2}, - number = 7, - doi = {10.1890/0012-9658(2002)083[2027:enfaht]2.0.co;2} -} - -@Article{ho2007biodegradation, - title = {Biodegradation Rates of 2-methylisoborneol (MIB) and Geosmin Through Sand Filters and in Bioreactors}, - author = {Lionel Ho and Daniel Hoefel and Franziska Bock and Christopher P. Saint and Gayle Newcombe}, - year = 2007, - journal = {Chemosphere}, - volume = 66, - pages = {2210--2218}, - url = {http://www.sciencedirect.com/science/article/pii/s0045653506011428}, - number = 11, - doi = {10.1016/j.chemosphere.2006.08.016} -} - -@Book{hobson2010taste, - title = {Tastes and Odours in Reservoirs}, - author = {Peter Hobson and Caroline Fazekas and Jenny House and Rob Daly and Tim Kildea and Steve Giglio and Michael Burch and Tsair-fuh Lin and Yan-min Chen}, - year = 2010, - publisher = {Water Quality Research Australia} -} - -@Article{hofbauer1988occurrence, - title = {Occurrence of Isopropylthio Compounds in the Aquatic Ecosystem (lake {Neusiedl}, {Austria}) As A Chemical Marker for {{\textit{Microcystis flos-aquae}}}}, - author = {Hofbauer, Barbara and Jüttner, Friedrich}, - year = 1988, - journal = {Fems Microbiology Ecology}, - publisher = {Blackwell Publishing Ltd Oxford, Uk}, - volume = 4, - pages = {113--121}, - number = 2 -} - -@Article{hoffmann2005system, - title = {System of Cyanoprokaryotes (cyanobacteria) State in 2004}, - author = {Hoffmann, Lucien and Komárek, Jiří and Kaštovský, Jan}, - year = 2005, - month = 10, - journal = {Algological Studies/archiv Für Hydrobiologie, Supplement Volumes}, - publisher = {Schweizerbart Science Publishers}, - volume = 117, - pages = {95--115}, - url = {http://dx.doi.org/10.1127/1864-1318/2005/0117-0095}, - doi = {10.1127/1864-1318/2005/0117-0095}, - address = {Stuttgart, Germany} -} - -@Article{holling1973resilience, - title = {Resilience and Stability of Ecological Systems}, - author = {Holling, Crawford S}, - year = 1973, - journal = {Annual Review of Ecology and Systematics}, - publisher = {Jstor}, - pages = {1--23} -} - -@Article{hooper2008ecological, - title = {The Ecological Niche of {{\textit{Daphnia Magna}}} Characterized Using Population Growth Rate}, - author = {Hooper, Helen L. and Connon, Richard and Callaghan, Amanda and Fryer, Geoffrey and Yarwood-buchanan, Sarah and Biggs, Jeremy and Maund, Steve J. and Hutchinson, Thomas H. and Sibly, Richard M.}, - year = 2008, - month = {Apr}, - journal = {Ecology}, - publisher = {Ecological Society of America}, - volume = 89, - pages = {1015--1022}, - url = {http://dx.doi.org/10.1890/07-0559.1}, - number = 4, - doi = {10.1890/07-0559.1} -} - -@Book{horne1994limnology, - title = {Limnology}, - author = {Horne, Alexander J and Goldman, Charles Remington}, - year = 1994, - publisher = {Mcgraw-hill New York} -} - -@Article{horner2011spatial, - title = {Spatial Distribution of Benthic Cysts of {{\textit{Alexandrium catenella}}} in Surface Sediments of {Puget Sound}, {Washington}, {USA}}, - author = {R.a. Horner and C.l. Greengrove and K.s. Davies-vollum and J.e. Gawel and J.r. Postel and A.m. Cox}, - year = 2011, - journal = {Harmful Algae}, - volume = 11, - pages = {96--105}, - url = {http://www.sciencedirect.com/science/article/pii/s1568988311000898}, - number = 0, - doi = {10.1016/j.hal.2011.08.004} -} - -@Article{hosaka1995off, - title = {Off-Flavor Problem in Drinking Water of Tokyo Arising From the Occurrence of Musty Odor in A Downstream Tributary}, - author = {Hosaka, Mitsugu and Murata, Kiyoko and Iikura, Yutaka and Oshirni, Akiko and Udagawa, Tomio}, - year = 1995, - month = jan, - journal = {Water Science and Technology}, - volume = 31, - pages = {29--34}, - number = 11, - doi = {10.1016/0273-1223(95)00452-S} -} - -@Article{hoson1992growth, - title = {Growth Characteristics of the Musty Odor Producing Alga, {{\textit{Oscillatoria tenuis}}}}, - author = {Hoson, T.}, - year = 1992, - journal = {Water Science and Technology}, - publisher = {Iwa Publishing}, - volume = 25, - pages = {177--184}, - url = {http://wst.iwaponline.com/content/25/2/177}, - number = 2, - doi = {10.2166/wst.1992.0050} -} - -@Article{hotzel1994long, - title = {Long-term Phytoplankton Monitoring of the Darling River At Burtundy, New-south-wales - Incidence and Significance of Cyanobacterial Blooms}, - author = {Hotzel, G. and Croome, R.}, - year = 1994, - journal = {Australian Journal of Marine and Freshwater Research}, - publisher = {C S I R O Publications}, - volume = 45, - pages = {747--759}, - language = {English}, - number = 5 -} - -@Book{hotzel1999phytoplankton, - title = {A Phytoplankton Methods Manual for Australian Freshwaters}, - author = {H{\"o}tzel, Gertraud and Croome, Roger}, - year = 1999, - publisher = {Land and Water Resources Research and Development Corporation} -} - -@Article{howarth1996regional, - title = {Regional Nitrogen Budgets and Riverine N \& P Fluxes for the Drainages to the North Atlantic Ocean: Natural and Human Influences}, - author = {Howarth, R.w. and Billen, G. and Swaney, D. and Townsend, A. and Jaworski, N. and Lajtha, K. and Downing, J.a. and Elmgren, R. and Caraco, N. and Jordan, T. and Berendse, F. and Freney, J. and Kudeyarov, V. and Murdoch, P. and Zhao-liang, Zhu}, - year = 1996, - journal = {Biogeochemistry}, - publisher = {Kluwer Academic Publishers}, - volume = 35, - pages = {75--139}, - url = {http://dx.doi.org/10.1007/bf02179825}, - language = {English}, - doi = {10.1007/bf02179825} -} - -@Article{hu1996odorous, - title = {Odorous Compounds From A Cyanobacterium in A Water Purification Plant in Central Taiwan}, - author = {T.l. Hu and P.c. Chiang}, - year = 1996, - journal = {Water Research}, - volume = 30, - pages = {2522--2525}, - url = {http://www.sciencedirect.com/science/article/pii/0043135496001236}, - number = 10, - doi = {10.1016/0043-1354(96)00123-6} -} - -@Book{hu2006zhong, - title = {中国淡水藻类--系统、分类及生态}, - author = {胡洪钧 and 魏印心}, - year = 2006, - publisher = {北京：科学出版社}, - language = {Zh} -} - -@PhDThesis{hu2011yun, - title = {云南高原湖库浮游细菌及其与浮游植物种群作用}, - author = {胡明明 and 刘永定}, - school = {中国科学院研究生院}, - year = 2011 -} - -@Article{huang1994mixed, - title = {Mixed-layer Hydrothermal Reservoir Model}, - author = {Poshu Huang and Joseph L. Dilorenzo and Tavit O. Najarian}, - year = 1994, - journal = {Journal of Hydraulic Engineering}, - volume = 120, - pages = {846--862}, - url = {https://ascelibrary.org/doi/abs/10.1061/%28asce%290733-9429%281994%29120%3a7%28846%29}, - number = 7, - doi = {10.1061/(asce)0733-9429(1994)120:7(846)}, - eprint = {https://ascelibrary.org/doi/pdf/10.1061/%28asce%290733-9429%281994%29120%3a7%28846%29} -} - -@Article{huang2007evaluation, - title = {Evaluation of Extracellular Products and Mutagenicity in Cyanobacteria Cultures Separated From A Eutrophic Reservoir}, - author = {Winn-jung Huang and Chun-hsi Lai and Yung-ling Cheng}, - year = 2007, - journal = {Science of the Total Environment}, - volume = 377, - pages = {214--223}, - url = {http://www.sciencedirect.com/science/article/pii/s0048969707001106}, - number = {2--3}, - doi = {10.1016/j.scitotenv.2007.01.075} -} - -@Article{huang2012toxicity, - title = {Toxicity and Bioaccumulation of Monomethylmercury in Freshwater Cyanobacteria: {{\textit{Oscillatoria tenuisa}}} and {{\textit{Microcystis aeruginosa}}}}, - author = {Huang, Winn-jung and Lu, Yen-ming and Yu, Wei-lun}, - year = 2012, - journal = {Environmental Forensics}, - volume = 13, - pages = {255--261}, - url = {http://www.tandfonline.com/doi/abs/10.1080/15275922.2012.676601}, - number = 3, - doi = {10.1080/15275922.2012.676601}, - eprint = {http://www.tandfonline.com/doi/pdf/10.1080/15275922.2012.676601} -} - -@Article{huang2014application, - title = {Application of the Technology of Water Lifting and Aeration on Improving Water Quality in A Deep Canyon Reservoir – A Case Study From {Northern China}}, - author = {Huang, Tinglin and Ma, Yue and Cong, Haibing and Tan, Pan}, - year = 2014, - journal = {Desalination and Water Treatment}, - volume = 52, - pages = {1636--1646}, - url = {http://dx.doi.org/10.1080/19443994.2013.848680}, - number = {7-9}, - doi = {10.1080/19443994.2013.848680}, - eprint = {http://dx.doi.org/10.1080/19443994.2013.848680} -} - -@Article{huang2018predominant, - title = {The Predominant Phytoplankton of {{\textit{Pseudoanabaena}}} Holding Specific Biosynthesis Gene-derived Occurrence of 2-{MIB} in A Drinking Water Reservoir}, - author = {Huang, Xin and Huang, Zhifeng and Chen, Xue-ping and Zhang, Dong and Zhou, Jizhi and Wang, Xianyun and Gao, Naiyun}, - year = 2018, - month = {Jul}, - journal = {Environmental Science and Pollution Research}, - volume = 25, - pages = {19134--19142}, - url = {https://doi.org/10.1007/s11356-018-2086-z}, - number = 19, - doi = {10.1007/s11356-018-2086-z} -} - -@Article{hudnell2010freshwater, - title = {Freshwater Harmful Algal Bloom (fhab) Suppression With Solar Powered Circulation (spc)}, - author = {H. Kenneth Hudnell and Christopher Jones and Bo Labisi and Vic Lucero and Dennis R. Hill and Joseph Eilers}, - year = 2010, - journal = {Harmful Algae}, - volume = 9, - pages = {208--217}, - url = {http://www.sciencedirect.com/science/article/pii/s1568988309001218}, - number = 2, - doi = {10.1016/j.hal.2009.10.003} -} - -@Article{hudon2014increasing, - title = {Increasing Occurrence of the Benthic Filamentous Cyanobacterium {{\textit{Lyngbya Wollei}}}: A Symptom of Freshwater Ecosystem Degradation}, - author = {Christiane Hudon, Michèle De Sève, Antonella Cattaneo}, - year = 2014, - journal = {Freshwater Science}, - publisher = {[university of Chicago Press, Society for Freshwater Science]}, - volume = 33, - pages = {606--618}, - url = {http://www.jstor.org/stable/10.1086/675932}, - number = 2 -} - -@Article{huisman1994light, - title = {Light-limited Growth and Competition for Light in Well-mixed Aquatic Environments: An Elementary Model}, - author = {Huisman, Jef and Weissing, Franz J}, - year = 1994, - journal = {Ecology}, - publisher = {Jstor}, - pages = {507--520} -} - -@Article{huisman1995competition, - title = {Competition for Nutrients and Light in A Mixed Water Column - A Theoretical-analysis}, - author = {Huisman, Jef and Weissing, Franz J.}, - year = 1995, - journal = {American Naturalist}, - publisher = {Univ Chicago Press}, - volume = 146, - pages = {536--564}, - language = {English}, - number = 4, - doi = {10.1086/285814} -} - -@Article{huisman1999biodiversity, - title = {Biodiversity of Plankton by Species Oscillations and Chaos}, - author = {Huisman, Jef and Weissing, Franz J}, - year = 1999, - journal = {Nature}, - publisher = {Nature Publishing Group}, - volume = 402, - pages = {407--410}, - number = 6760 -} - -@Article{huisman1999competition, - title = {Competition for Light Between Phytoplankton Species: Experimental Tests of Mechanistic Theory}, - author = {Huisman, Jef and Jonker, Richard R and Zonneveld, Cor and Weissing, Franz J}, - year = 1999, - journal = {Ecology}, - publisher = {Eco Soc America}, - volume = 80, - pages = {211--222}, - number = 1 -} - -@Article{huisman1999population, - title = {Population Dynamics of Light-limited Phytoplankton: Microcosm Experiments}, - author = {Huisman, Jef}, - year = 1999, - journal = {Ecology}, - publisher = {Eco Soc America}, - volume = 80, - pages = {202--210}, - number = 1 -} - -@Article{huisman1999species, - title = {Species Dynamics in Phytoplankton Blooms: Incomplete Mixing and Competition for Light}, - author = {Huisman, Jef and Van Oostveen, Paul and Weissing, Franz J}, - year = 1999, - journal = {The American Naturalist}, - publisher = {Jstor}, - volume = 154, - pages = {46--68}, - number = 1 -} - -@Article{huisman2001biological, - title = {Biological Conditions for Oscillations and Chaos Generated by Multispecies Competition}, - author = {Huisman, Jef and Weissing, Franz J.}, - year = 2001, - month = {Oct}, - journal = {Ecology}, - booktitle = {Ecology}, - publisher = {Ecological Society of America}, - volume = 82, - pages = {2682--2695}, - url = {http://dx.doi.org/10.1890/0012-9658(2001)082[2682:bcfoac]2.0.co;2}, - number = 10, - doi = {10.1890/0012-9658(2001)082[2682:bcfoac]2.0.co;2}, - comment = {Doi: 10.1890/0012-9658(2001)082[2682:bcfoac]2.0.co;2} -} - -@Article{huisman2001fundamental, - title = {Fundamental Unpredictability in Multispecies Competition}, - author = {Huisman, Jef and Weissing, Franz J}, - year = 2001, - journal = {The American Naturalist}, - publisher = {Jstor}, - volume = 157, - pages = {488--494}, - number = 5 -} - -@Article{huisman2004changes, - title = {Changes in Turbulent Mixing Shift Competition for Light Between Phytoplankton Species}, - author = {Huisman, Jef and Sharples, Jonathan and Stroom, Jasper M and Visser, Petra M and Kardinaal, W Edwin A and Verspagen, Jolanda Mh and Sommeijer, Ben}, - year = 2004, - journal = {Ecology}, - publisher = {Eco Soc America}, - volume = 85, - pages = {2960--2970}, - number = 11 -} - -@InCollection{huisman2005harmful, - title = {Population Dynamics of Harmful Cyanobacteria}, - author = {Huisman, Jef and Hulot, Florenced.}, - year = 2005, - booktitle = {Harmful Cyanobacteria}, - publisher = {Springer Netherlands}, - volume = 3, - pages = {143--176}, - url = {http://dx.doi.org/10.1007/1-4020-3022-3_7}, - isbn = {978-1-4020-3009-3}, - doi = {10.1007/1-4020-3022-3_7}, - language = {English} -} - -@Article{humbert2010molecular, - title = {Molecular Approaches for Monitoring Potentially Toxic Marine and Freshwater Phytoplankton Species}, - author = {Humbert, J.f. and Quiblier, C. and Gugger, M.}, - year = 2010, - journal = {Analytical and Bioanalytical Chemistry}, - publisher = {Springer-verlag}, - volume = 397, - pages = {1723--1732}, - url = {http://dx.doi.org/10.1007/s00216-010-3642-7}, - language = {English}, - doi = {10.1007/s00216-010-3642-7} -} - -@Article{humphries1979simple, - title = {A Simple Method for Separating Cells of {{\textit{Microcystis aeruginosa}}} for Counting}, - author = {S.e. Humphries and F. Widjaja}, - year = 1979, - journal = {British Phycological Journal}, - volume = 14, - pages = {313--316}, - url = {http://dx.doi.org/10.1080/00071617900650331}, - number = 4, - doi = {10.1080/00071617900650331}, - eprint = {http://dx.doi.org/10.1080/00071617900650331} -} - -@Article{huszar1997phytoplankton, - title = {Phytoplankton Periodicity and Sequences of Dominance in An Amazonian Flood-plain Lake ({lago Batata}, Par?, Brasil): Responses to Gradual Environmental Change}, - author = {De M. Huszar, Veral{\'u}cia and Reynolds, Colins.}, - year = 1997, - journal = {Hydrobiologia}, - publisher = {Kluwer Academic Publishers}, - volume = 346, - pages = {169--181}, - url = {http://dx.doi.org/10.1023/a\%3a1002926318409}, - language = {English}, - doi = {10.1023/a:1002926318409} -} - -@Article{hutchinson1957cold, - title = {Cold Spring Harbor Symposium on Quantitative Biology}, - author = {Hutchinson, G Evelyn}, - year = 1957, - journal = {Concluding Remarks}, - volume = 22, - pages = {415--427} -} - -@Article{hutchinson1965ecological, - title = {The Ecological Theater and the Evolutionary Play}, - author = {Hutchinson, G Evelyn}, - year = 1965, - journal = {Bioscience} -} - -@Book{hutchinson1993treatise, - title = {A Treatise on Limnology. Volume Iv: the Zoobenthos.}, - author = {Hutchinson, George Evelyn and Edmondson, Yvette H and Others}, - year = 1993, - publisher = {John Wiley \& Sons, Inc.} -} - -@Misc{hutchison1957treatise, - title = {A Treatise of Limnology. Vol. 1 Geography, Physics and Chemistry}, - author = {Hutchison, Ce}, - year = 1957, - publisher = {Wiley, New York, New York, {USA}.[links]} -} - -@Article{hwang1995identification, - title = {Identification and Quantification of Sulfur and Nitrogen Containing Odorous Compounds in Wastewater}, - author = {Yongwoo Hwang and Tomonori Matsuo and Keisuke Hanaki and Noriyuki Suzuki}, - year = 1995, - journal = {Water Research}, - volume = 29, - pages = {711--718}, - url = {http://www.sciencedirect.com/science/article/pii/004313549400145w}, - number = 2, - doi = {10.1016/0043-1354(94)00145-w} -} - -@Article{hwang2003water, - title = {Water Quality and Limnology of Korean Reservoirs}, - author = {Hwang, Soon-jin and Kwun, Soon-kuk and Yoon, Chun-gyeong}, - year = 2003, - journal = {Paddy and Water Environment}, - publisher = {Springer-verlag}, - volume = 1, - pages = {43--52}, - url = {http://dx.doi.org/10.1007/s10333-003-0010-7}, - language = {English}, - doi = {10.1007/s10333-003-0010-7} -} - -@Article{hyenstrand2000competition, - title = {Competition Between the Green Alga Scenedesmus and the Cyanobacterium Synechococcus Under Different Modes of Inorganic Nitrogen Supply}, - author = {Hyenstrand, P. and Burkert, U. and Pettersson, A. and Blomqvist, P.}, - year = 2000, - journal = {Hydrobiologia}, - publisher = {Kluwer Academic Publishers}, - volume = 435, - pages = {91--98}, - url = {http://dx.doi.org/10.1023/a%3a1004008721373}, - language = {English}, - number = {1--3}, - doi = {10.1023/a:1004008721373} -} - -@Article{ibelings1991diurnal, - title = {Diurnal Changes in Buoyancy and Vertical Distribution in Populations of Microcystisin Two Shallow Lakes}, - author = {Ibelings, Bas W. and Mur, Luuc R. and Walsby, Anthony E.}, - year = 1991, - journal = {Journal of Plankton Research}, - volume = 13, - pages = {419--436}, - url = {http://plankt.oxfordjournals.org/content/13/2/419.abstract}, - number = 2, - doi = {10.1093/plankt/13.2.419}, - eprint = {http://plankt.oxfordjournals.org/content/13/2/419.full.pdf+html} -} - -@Book{ilec1994survey, - title = {1988--1993 Survey of the State of the World's Lakes}, - author = {Ilec/lake Biwa Research Institute [eds]}, - year = 1994, - publisher = {International Lake Environment Committee, Otsu and United Nations Environment Programme Nairobi}, - volume = {I-iv} -} - -@Article{imai2009temperature, - title = {Temperature-dependent Dominance of {{\textit{Microcystis}}} (cyanophyceae) Species: {{\textit{ M. aeruginosa}}} and {{\textit{M. wesenbergii}}}}, - author = {Imai, Hiroyuki and Chang, Kwang-hyeon and Kusaba, Maiko and Nakano, Shin-ichi}, - year = 2009, - journal = {Journal of Plankton Research}, - volume = 31, - pages = {171--178}, - url = {http://plankt.oxfordjournals.org/content/31/2/171.abstract}, - number = 2, - doi = {10.1093/plankt/fbn110}, - eprint = {http://plankt.oxfordjournals.org/content/31/2/171.full.pdf+html} -} - -@Article{innok2005detection, - title = {Detection of {{\textit{Microcystis}}} in Lake Sediment Using Molecular Genetic Techniques}, - author = {Innok, Sasidhorn and Matsumura, Masatoshi and Boonkerd, Nantakorn and Teaumroong, Neung}, - year = 2005, - journal = {World Journal of Microbiology and Biotechnology}, - publisher = {Kluwer Academic Publishers}, - volume = 21, - pages = {1559--1568}, - url = {http://dx.doi.org/10.1007/s11274-005-7893-y}, - language = {English}, - doi = {10.1007/s11274-005-7893-y} -} - -@Article{ishikawa2004estimation, - title = {Estimation of {{\textit{Microcystis}}} Colony Size in Developing Water Blooms Via Image Analysis}, - author = {Ishikawa, K. and Walker, R. and Tsujimura, S.}, - year = 2004, - journal = {Journal of Japan Society on Water Environment}, - volume = 27, - pages = {69--72}, - number = 1 -} - -@Article{istvanovics2010phytoplankton, - title = {Phytoplankton Dynamics in Relation to Connectivity, Flow Dynamics and Resource Availability---the Case of A Large, Lowland River, the Hungarian Tisza}, - author = {Istv{\'a}novics, Vera and Honti, M{\'a}rk and V{\"o}r{\"o}s, Lajos and Kozma, Zsolt}, - year = 2010, - journal = {Hydrobiologia}, - volume = 637, - pages = {121--141}, - url = {http://dx.doi.org/10.1007/s10750-009-9991-6}, - number = 1, - doi = {10.1007/s10750-009-9991-6} -} - -@Article{izaguirre1982geosmin, - title = {Geosmin and 2-methylisoborneol From Cyanobacteria in Three Water Supply Systems}, - author = {Izaguirre, George and Hwang, Cordelia J. and Krasner, Stuart W. and Mcguire, Michael J.}, - year = 1982, - journal = {Applied and Environmental Microbiology}, - volume = 43, - pages = {708--714}, - number = 3, - howpublished = {\url{http://aem.asm.org/content/43/3/708.abstract}} -} - -@Article{izaguirre1983production, - title = {Production of 2-methyliso-borneol by Two Benthic Cyanophyta}, - author = {Izaguirre, G. and Hwang, Cj and Krasner, Sw and Mcguire, Mj}, - year = 1983, - journal = {Water Science \& Technology}, - volume = 15, - pages = {211--220}, - url = {http://www.iwaponline.com/wst/01506/wst015060211.htm}, - number = {6-7} -} - -@Article{izaguirre1992copper, - title = {A Copper-tolerant {{\textit{Phormidium}}} Species From Lake Mathews, California, That Produces 2-methylisoborneol and Geosmin}, - author = {Izaguirre, G}, - year = 1992, - journal = {Water Science \& Technology}, - volume = 25, - pages = {217--223}, - number = 2 -} - -@Article{izaguirre1995geosmin, - title = {Geosmin and 2-methylisoborneol Production in A Major Aqueduct System}, - author = {G. Izaguirre and W.d. Taylor}, - year = 1995, - journal = {Water Science and Technology}, - volume = 31, - pages = {41--48}, - url = {http://www.sciencedirect.com/science/article/pii/027312239500454u}, - number = 11, - note = {Off-flavours in the Aquatic Environment 1994: Selected Proceedings of the 4th International Symposium on Off-flavours in the Aquatic Environment}, - doi = {10.1016/0273-1223(95)00454-u} -} - -@Article{izaguirre1998pseudanabaena, - title = {A {{\textit{Pseudanabaena}}} species From {Castaic Lake}, {California}, That Produces 2-methylisoborneol}, - author = {George Izaguirre and William D Taylor}, - year = 1998, - journal = {Water Research}, - volume = 32, - pages = {1673--1677}, - url = {http://www.sciencedirect.com/science/article/pii/s0043135497003795}, - number = 5, - doi = {10.1016/s0043-1354(97)00379-5} -} - -@Article{izaguirre1999off, - title = {Off-flavor Problems in Two Reservoirs, Associated With Planktonic {{\textit{Pseudanabaena}}} Species}, - author = {Izaguirre, G and Taylor, Wd and Pasek, J}, - year = 1999, - journal = {Water Science and Technology}, - publisher = {Iwa Publishing}, - volume = 40, - pages = 85, - number = 6 -} - -@Article{izaguirre1999offflavor, - title = {{off-flavor Problems in Two Reservoirs, Associated With Planktonic {{\textit{Pseudanabaena}}} Species}}, - author = {Izaguirre, G. and Taylor, W. D. and Pasek, J.}, - year = 1999, - month = 09, - journal = {Water Science and Technology}, - volume = 40, - pages = {85--90}, - url = {https://doi.org/10.2166/wst.1999.0268}, - number = 6, - doi = {10.2166/wst.1999.0268} -} - -@Article{izaguirre2004guide, - title = {A Guide to Geosmin- and {MIB}-producing Cyanobacteria in the {United States}}, - author = {Izaguirre, G. and Taylor, W.d.}, - year = 2004, - journal = {Water Science and Technology}, - publisher = {Iwa Publishing}, - volume = 49, - pages = {19--24}, - url = {http://wst.iwaponline.com/content/49/9/19}, - number = 9 -} - -@Article{izaguirre2007benthic, - title = {Benthic Cyanobacteria (oscillatoriaceae) That Produce Microcystin-{LR}, Isolated From Four Reservoirs in {Southern California}}, - author = {George Izaguirre and Anne-dorothee Jungblut and Brett A. Neilan}, - year = 2007, - journal = {Water Research}, - volume = 41, - pages = {492--498}, - url = {http://www.sciencedirect.com/science/article/pii/s0043135406005653}, - number = 2, - doi = {10.1016/j.watres.2006.10.012} -} - -@Article{izaguirre2007geosmin, - title = {Geosmin and {MIB} Events in A New Reservoir in Southern California}, - author = {Izaguirre, George and Taylor, W}, - year = 2007, - journal = {Water Science \& Technology}, - volume = 55, - pages = {9--14}, - number = 5 -} - -@Article{jacoby2000environmental, - title = {Environmental Factors Associated With A Toxic Bloom of {{\textit{Microcystis aeruginosa}}}}, - author = {Jacoby, Jean M and Collier, Diane C and Welch, Eugene B and Hardy, F Joan and Crayton, Michele}, - year = 2000, - journal = {Canadian Journal of Fisheries and Aquatic Sciences}, - volume = 57, - pages = {231--240}, - url = {http://www.nrcresearchpress.com/doi/abs/10.1139/f99-234}, - number = 1, - doi = {10.1139/f99-234}, - eprint = {http://www.nrcresearchpress.com/doi/pdf/10.1139/f99-234} -} - -@Article{jahnichen2011spatio, - title = {Spatio-temporal Distribution of Cell-bound and Dissolved Geosmin in Wahnbach Reservoir: Causes and Potential Odour Nuisances in Raw Water}, - author = {J{\"a}hnichen, S. and J{\"a}schke, K. and Wieland, F. and Packroff, G. and Benndorf, J.}, - year = 2011, - journal = {Water Research}, - publisher = {Elsevier}, - volume = 45, - pages = {4973--4982}, - url = {http://www.sciencedirect.com/science/article/pii/s0043135411003915}, - number = 16, - doi = {10.1016/j.watres.2011.06.043} -} - -@Article{jancula2011critical, - title = {Critical Review of Actually Available Chemical Compounds for Prevention and Management of Cyanobacterial Blooms}, - author = {Daniel Jan\v{c}ula and Blahoslav Maršálek}, - year = 2011, - journal = {Chemosphere}, - volume = 85, - pages = {1415--1422}, - url = {http://www.sciencedirect.com/science/article/pii/s0045653511010010}, - number = 9, - doi = {10.1016/j.chemosphere.2011.08.036} -} - -@Article{janse2003high, - title = {High-resolution Differentiation of Cyanobacteria by Using Rrna-internal Transcribed Spacer Denaturing Gradient Gel Electrophoresis}, - author = {Janse, Ingmar and Meima, Marion and Kardinaal, W. Edwin A. and Zwart, Gabriel}, - year = 2003, - journal = {Applied and Environmental Microbiology}, - volume = 69, - pages = {6634--6643}, - url = {http://aem.asm.org/content/69/11/6634.abstract}, - number = 11, - doi = {10.1128/aem.69.11.6634-6643.2003} -} - -@Article{jansson1996nutrient, - title = {Nutrient Limitation of Bacterioplankton, Autotrophic and Mixotrophic Phytoplankton, and Heterotrophic Nanoflagellates in {Lake {\"o}rtr{\"a}sket}}, - author = {Jansson, Mats and Blomqvist, Peter and Jonsson, Anders and Bergstr{\"o}m, Ann-kristin}, - year = 1996, - journal = {Limnology and Oceanography}, - publisher = {Wiley Online Library}, - volume = 41, - pages = {1552--1559}, - number = 7 -} - -@Article{jardine1999detection, - title = {Detection of Odour and Health Risk Perception of Drinking Water}, - author = {Cynthia G. Jardine and Nancy Gibson and Steve E. Hrudey}, - year = 1999, - journal = {Water Science and Technology}, - volume = 40, - pages = {91--98}, - url = {http://www.sciencedirect.com/science/article/pii/s0273122399005430}, - number = 6, - note = {Off-flavours in the Aquatic Environment 1997 Selected Proceedings Ofthe 5th International Symposium on Off-flavours in the Aquatic Environment}, - doi = {10.1016/s0273-1223(99)00543-0} -} - -@Article{jensen1994actinomycetes, - title = {Actinomycetes As A Factor in Odour Problems Affecting Drinking Water From the North Saskatchewan River}, - author = {Jensen, Se and Anders, Cl and Goatcher, Lj and Perley, T. and Kenefick, S. and Hrudey, Se}, - year = 1994, - journal = {Water Research}, - publisher = {Elsevier}, - volume = 28, - pages = {1393--1401}, - url = {http://www.sciencedirect.com/science/article/pii/0043135494903069}, - number = 6, - doi = {0043-1354(94)90306-9} -} - -@Article{jeppesen2005lake, - title = {Lake Restoration and Biomanipulation in Temperate Lakes: Relevance for Subtropical and Tropical Lakes}, - author = {Jeppesen, Erik and Søndergaard, Martin and Mazzeo, Nestor and Meerhoff, Mariana and Branco, C and Huszar, Vera and Scasso, Flavio}, - year = 2005, - journal = {Restoration and Management of Tropical Eutrophic Lakes}, - publisher = {New Delhi: Oxford and Ibh Publishing Co}, - pages = {341--359} -} - -@Article{jia2019light, - title = {Light As A Possible Regulator of {MIB}-producing {{\textit{Planktothrix}}} in Source Water Reservoir, Mechanism and {{\textit{in-situ}}} Verification}, - author = {Zeyu Jia and Ming Su and Tingting Liu and Qingyuan Guo and Qi Wang and Michael Burch and Jianwei Yu and Min Yang}, - year = 2019, - journal = {Harmful Algae}, - volume = 88, - pages = 101658, - url = {http://www.sciencedirect.com/science/article/pii/s1568988319301313}, - doi = {10.1016/j.hal.2019.101658}, - other = {author2} -} - -@Article{jiang2006geosmin, - title = {Geosmin Biosynthesis. Streptomyces Coelicolor Germacradienol/germacrene D Synthase Converts Farnesyl Diphosphate to Geosmin}, - author = {Jiang, Jiaoyang and He, Xiaofei and Cane, David E.}, - year = 2006, - journal = {Journal of the American Chemical Society}, - volume = 128, - pages = {8128--8129}, - url = {http://pubs.acs.org/doi/abs/10.1021/ja062669x}, - number = 25, - doi = {10.1021/ja062669x}, - eprint = {http://pubs.acs.org/doi/pdf/10.1021/ja062669x} -} - -@Article{jiang2007biosynthesis, - title = {Biosynthesis of the Earthy Odorant Geosmin by A Bifunctional {{\textit{Streptomyces~coelicolor}}} Enzyme}, - author = {Jiang, Jiaoyang and He, Xiaofei and Cane, David E.}, - year = 2007, - journal = {Nature Chemical Biology}, - publisher = {Nature Publishing Group}, - volume = 3, - pages = {711--715}, - url = {https://www.nature.com/articles/nchembio.2007.29}, - number = 11, - doi = {10.1038/nchembio.2007.29} -} - -@Article{jiang2008statistical, - title = {Statistical Study on the Effects of Environmental Factors on the Growth and Microcystins Production of Bloom-forming Cyanobacterium-{\textit{Microcystis aeruginosa}}}, - author = {Y. Jiang and B. Ji and R.n.s. Wong and M.h. Wong}, - year = 2008, - journal = {Harmful Algae}, - volume = 7, - pages = {127--136}, - url = {http://www.sciencedirect.com/science/article/pii/s156898830700100x}, - number = 2, - doi = {10.1016/j.hal.2007.05.012} -} - -@PhDThesis{jiang2014chan, - title = {产拟柱孢藻毒素蓝藻及其毒素合成基因的分子生态学研究}, - author = {蒋永光 and 李仁辉}, - school = {中国科学院大学}, - year = 2014 -} - -@Article{jiguo2012distribution, - title = {Distribution Characteristics of Nutrients and Chlorophyll-a in A Lake During the Icebound Season: A Case Study of A Landscape Lake in Changchun, {China}}, - author = {Huang Jiguo and Li Sen and Wang Yu and Gao Qing and Fu Hao}, - year = 2012, - journal = {Apcbee Procedia}, - volume = 1, - pages = {8--15}, - url = {http://www.sciencedirect.com/science/article/pii/s2212670812000048}, - number = 0, - note = {international Conference on Environmental Science and Development (icesd 2012), 5-7 January 2012, Hong Kong}, - doi = {10.1016/j.apcbee.2012.03.003} -} - -@Article{jiittner1984characterization, - title = {Characterization of {{\textit{Microcystis}}} Strains by Alkyl Sulfides and $\beta$-cyclocitral}, - author = {Jiittner, Friedrich}, - year = 1984, - journal = {Zeitschrift Für Naturforschung C}, - publisher = {Verlag Der Zeitschrift Für Naturforschung}, - volume = 39, - pages = {867--871}, - number = {9-10} -} - -@Article{jinbang2006investigation, - title = {Investigation and Analysis of Pollution Sources in Yanghe Reservoir}, - author = {Cai, Jinbang and Li, Wenqi and Liu, Na and Sun, Yu and Yang, Jin}, - year = 2006, - journal = {China Rural Water and Hydropower (in Chinese)}, - volume = 9, - pages = {51--56} -} - -@InCollection{john2015filamentous, - title = {Chapter 8 - Filamentous (nonconjugating) And plantlike Green Algae}, - author = {David M. John and Fabio Rindi}, - year = 2015, - booktitle = {Freshwater Algae of North America (second Edition)}, - publisher = {Academic Press}, - pages = {375--427}, - url = {http://www.sciencedirect.com/science/article/pii/b9780123858764000086}, - address = {Boston}, - isbn = {978-0-12-385876-4}, - doi = {10.1016/b978-0-12-385876-4.00008-6} -} - -@Article{jones1982recent, - title = {Recent Advances in Assessing Impact of Phosphorus Loads on Eutrophication-related Water Quality}, - author = {Jones, R and Lee, G Fred}, - year = 1982, - journal = {Water Research}, - volume = 16, - pages = {503--515}, - number = 5 -} - -@Article{jones1993limnology, - title = {Limnology of Missouri Reservoirs: An Analysis of Regional Patterns}, - author = {Jones, John R. and Knowlton, Matthew F.}, - year = 1993, - journal = {Lake and Reservoir Management}, - volume = 8, - pages = {17--30}, - url = {http://www.tandfonline.com/doi/abs/10.1080/07438149309354455}, - number = 1, - doi = {10.1080/07438149309354455} -} - -@Article{jones1995situ, - title = {In Situ Production of Volatile Odour Compounds by River and Reservoir Phytoplankton Populations in Australia}, - author = {Jones, Gary J and Korth, Wolfgang}, - year = 1995, - journal = {Water Science and Technology}, - publisher = {Elsevier}, - volume = 31, - pages = {145--151}, - number = 11 -} - -@Article{jorgensen2016relations, - title = {Relations Between Abundance of Potential Geosmin-and 2-{MIB}-producing Organisms and Concentrations of These Compounds in Water From Three Australian Reservoirs}, - author = {Jørgensen, Niels Og and Podduturi, Raju and Burford, Michele A}, - year = 2016, - journal = {Journal of Water Supply: Research and Technology-aqua}, - publisher = {Iwa Publishing}, - volume = 65, - pages = {504--513}, - number = 6 -} - -@Book{bradley2013current, - title = {Current perspectives in contaminant hydrology and water resources sustainability}, - author = {Bradley, Paul M.}, - year = 2013, - publisher = {InTech}, - url = {https://doi.org/10.5772/47884}, - address = {Rijeka, Croatia}, - doi = {10.5772/47884} -} - -@Article{juanico1995effect, - title = {Effect of Effluent Addition to A Freshwater Reservoir on the Filter Clogging Capacity of Irrigation Water}, - author = {Marcelo Juanico and Yossi Azov and Beny Teltsch and Gedaliah Shelef}, - year = 1995, - journal = {Water Research}, - volume = 29, - pages = {1695--1702}, - url = {http://www.sciencedirect.com/science/article/pii/0043135494003252}, - number = 7, - doi = {10.1016/0043-1354(94)00325-2} -} - -@Article{justin2018interactions, - title = {Interactions Between Nitrogen Form, Loading Rate, and Light Intensity on {{\textit{Microcystis}}} and {{\textit{Planktothrix}}} Growth and Microcystin Production}, - author = {Justin D. Chaffin and Timothy W. Davis and Derek J. Smith and Mikayla M. Baer and Gregory J. Dick}, - year = 2018, - journal = {Harmful Algae}, - volume = 73, - pages = {84--97}, - url = {http://www.sciencedirect.com/science/article/pii/s1568988318300210}, - doi = {10.1016/j.hal.2018.02.001} -} - -@Article{jutter1986seasonal, - title = {Seasonal Analysis of Volatile Organic Biogenic Substances (vobs) in Freshwater Phytoplankton Populations Dominated by Dinobryon, {{\textit{Microcystis}}} and {{\textit{Aphanizomenon}}}1}, - author = {Jüttner, Friedrich and Höflacher, Brigitte and Wurster, Karl}, - year = 1986, - journal = {Journal of Phycology}, - volume = 22, - pages = {169--175}, - url = {https://onlinelibrary.wiley.com/doi/abs/10.1111/j.1529-8817.1986.tb04160.x}, - number = 2, - doi = {10.1111/j.1529-8817.1986.tb04160.x}, - eprint = {https://onlinelibrary.wiley.com/doi/pdf/10.1111/j.1529-8817.1986.tb04160.x} -} - -@Article{juttner1981detection, - title = {Detection of Lipid Degradation Products in the Water of A Reservoir During A Bloom of Synura Uvella}, - author = {Jüttner, Friedrich}, - year = 1981, - journal = {Applied and Environmental Microbiology}, - volume = 41, - pages = {100--106}, - url = {http://aem.asm.org/content/41/1/100.abstract}, - number = 1 -} - -@Article{juttner1986reducing, - title = {The Reducing Capacities of Cyanobacteria for Aldehydes and Ketones}, - author = {Jüttner, Friedrich and Hans, Robert}, - year = 1986, - journal = {Applied Microbiology and Biotechnology}, - publisher = {Springer}, - volume = 25, - pages = {52--54}, - url = {https://link.springer.com/article/10.1007/BF00252512}, - number = 1, - doi = {10.1007/BF00252512} -} - -@Article{kakimoto2014culture, - title = {Culture Temperature Affects Gene Expression and Metabolic Pathways in the 2-methylisoborneol-producing Cyanobacterium {{\textit{Pseudanabaena galeata}}}}, - author = {Masayuki Kakimoto and Toshiki Ishikawa and Atsuko Miyagi and Kazuaki Saito and Motonobu Miyazaki and Takashi Asaeda and Masatoshi Yamaguchi and Hirofumi Uchimiya and Maki Kawai-yamada}, - year = 2014, - journal = {Journal of Plant Physiology}, - volume = 171, - pages = {292--300}, - url = {http://www.sciencedirect.com/science/article/pii/s017616171300360x}, - number = {3–4}, - doi = {10.1016/j.jplph.2013.09.005} -} - -@Article{kang2008jian, - title = {碱度增加对蛋白核小球藻光合活性与胞外多糖的影响}, - author = {康丽娟 and 潘晓洁 and 常锋毅等}, - year = 2008, - journal = {湖泊科学}, - volume = 20, - pages = {251--256}, - number = 2, - language = {Zh} -} - -@PhDThesis{kang2008wu, - title = {无机碳浓度增加对水华蓝藻的生理生态学效应研究}, - author = {康丽娟 and 刘永定}, - school = {中国科学院研究生院}, - year = 2008 -} - -@Article{kanto2005quantification, - title = {Quantification of Toxic {{\textit{Microcystis}}} spp. During the 2003 and 2004 Blooms in {Western Lake Erie} Using {Quantitative {Real-time PCR}}}, - author = {Rinta-kanto, J. M. and Ouellette, A. J. A. and Boyer, G. L. and Twiss, M. R. and Bridgeman, T. B. and Wilhelm, S. W.}, - year = 2005, - journal = {Environmental Science \& Technology}, - volume = 39, - pages = {4198--4205}, - url = {http://pubs.acs.org/doi/abs/10.1021/es048249u}, - number = 11, - doi = {10.1021/es048249u}, - eprint = {http://pubs.acs.org/doi/pdf/10.1021/es048249u} -} - -@Article{kardinaal2007competition, - title = {Competition for Light Between Toxic and Nontoxic Strains of the Harmful Cyanobacterium {{\textit{Microcystis}}}}, - author = {Kardinaal, W. Edwin A. and Tonk, Linda and Janse, Ingmar and Hol, Suzanne and Slot, Pieter and Huisman, Jef and Visser, Petra M.}, - year = 2007, - journal = {Applied and Environmental Microbiology}, - volume = 73, - pages = {2939--2946}, - url = {http://aem.asm.org/content/73/9/2939.abstract}, - number = 9, - doi = {10.1128/aem.02892-06} -} - -@Article{karlson2011introduction, - title = {Introduction to Methods for Quantitative Phytoplankton Analysis}, - author = {Karlson, Bengt and Godhe, Anna and Cusack, Caroline and Bresnan, Eileen}, - year = 2011, - journal = {Microscopic and Molecular Methods for Quantitative Phytoplankton Analysis. Ioc Manuals and Guides}, - pages = {5--12}, - number = 55 -} - -@Article{karlssonelfgren2004importance, - title = {The Importance of Shallow Sediments in the Recruitment of {{\textit{Anabaena}}} and {{\textit{Aphanizomenon}}} (cyanophyceae)}, - author = {Karlsson-elfgren, Irene and Brunberg, Anna-kristina}, - year = 2004, - journal = {Journal of Phycology}, - publisher = {Blackwell Science Inc}, - volume = 40, - pages = {831--836}, - url = {http://dx.doi.org/10.1111/j.1529-8817.2004.04070.x}, - number = 5, - doi = {10.1111/j.1529-8817.2004.04070.x} -} - -@Article{katsiapi2011phytoplankton, - title = {Phytoplankton and Water Quality in A Mediterranean Drinking-water Reservoir (marathonas Reservoir, Greece)}, - author = {Katsiapi, Matina and Moustaka-gouni, Maria and Michaloudi, Evangelia and Kormas, Konstantinosar.}, - year = 2011, - journal = {Environmental Monitoring and Assessment}, - publisher = {Springer Netherlands}, - volume = 181, - pages = {563--575}, - url = {http://dx.doi.org/10.1007/s10661-010-1851-3}, - language = {English}, - doi = {10.1007/s10661-010-1851-3} -} - -@Article{kawara1998study, - title = {A Study on the Role of Hydraulic Retention Time in Eutrophication of the Asahi River Dam Reservoir}, - author = {Osami Kawara and Eisaku Yura and Shinobu Fujii and Toyohisa Matsumoto}, - year = 1998, - journal = {Water Science and Technology}, - volume = 37, - pages = {245--252}, - url = {http://www.sciencedirect.com/science/article/pii/s0273122398000304}, - number = 2, - note = {Reservoir Management and Water Supply — An Integrated System}, - doi = {10.1016/s0273-1223(98)00030-4} -} - -@Article{kehoe2015who, - title = {Who Smells? Forecasting Taste and Odor in A Drinking Water Reservoir}, - author = {Michael J. Kehoe and Kwok P. Chun and Helen M. Baulch}, - year = 2015, - journal = {Environmental Science \& Technology}, - volume = 49, - pages = {10984--10992}, - url = {http://dx.doi.org/10.1021/acs.est.5b00979}, - number = 18, - doi = {10.1021/acs.est.5b00979}, - note = {Pmid: 26266956}, - eprint = {http://dx.doi.org/10.1021/acs.est.5b00979} -} - -@Article{kendal2002spatial, - title = {Spatial Aggregation of the Colorado Potato Beetle Described by An Exponential Dispersion Model}, - author = {Wayne S. Kendal}, - year = 2002, - journal = {Ecological Modelling}, - volume = 151, - pages = {261--269}, - url = {http://www.sciencedirect.com/science/article/pii/s030438000100494x}, - number = {2–3}, - doi = {10.1016/s0304-3800(01)00494-x} -} - -@Article{keonhee2014identification, - title = {Identification and Analysis of Geosmin Production Potential of {{\textit{Anabaena}}} Stain Isolated From North Han River Using Genetic Methods}, - author = {Kim Keon-hee and Byung-jin Lim and Kyung-a You and S-j Hwang}, - year = 2014, - journal = {The Korean Society of Limnology}, - volume = 47, - pages = {342--349}, - number = 4 -} - -@Article{khiari1999distribution, - title = {Distribution-generated Taste-and-odor Phenomena}, - author = {Djanette Khiari and Auguste Bruchet and Thomas Gittelman and Lleonard Matia and Sylvia Barrett and I.h. (mel) Suffet and Ruth Hund}, - year = 1999, - journal = {Water Science and Technology}, - volume = 40, - pages = {129--133}, - url = {http://www.sciencedirect.com/science/article/pii/s027312239900548x}, - number = 6, - note = {Off-flavours in the Aquatic Environment 1997selected Proceedings Ofthe 5th International Symposium on Off-flavours in the Aquatic Environment}, - doi = {10.1016/s0273-1223(99)00548-x} -} - -@Article{kikuchi1973odorous, - title = {Odorous Metabolite of Blue-green Alga: Schizothrix Muelleri Nageli Collected in the Southern Basin of Lake Biwa; Identification of Geosmin}, - author = {Kikuchi, T and Mimura, T and Harimaya, K and Yano, H and Arimoto, T and Masada, Y and Inoue, T}, - year = 1973, - journal = {Chemical \& Pharmaceutical Bulletin} -} - -@Article{kilham1987phytoplankton, - title = {Phytoplankton Ecology: Structure, Function and Fluctuation}, - author = {Susan S. Kilham}, - year = 1987, - journal = {Trends in Ecology \& Evolution}, - volume = 2, - pages = {380 -}, - url = {http://www.sciencedirect.com/science/article/pii/0169534787901431}, - number = 12, - doi = {10.1016/0169-5347(87)90143-1} -} - -@Article{kim2003sediment, - title = {Sediment Characteristics, Phosphorus Types and Phosphorus Release Rates Between River and Lake Sediments}, - author = {Lee-hyung Kim and Euiso Choi and Michael K Stenstrom}, - year = 2003, - journal = {Chemosphere}, - volume = 50, - pages = {53--61}, - url = {http://www.sciencedirect.com/science/article/pii/s0045653502003107}, - number = 1, - doi = {10.1016/s0045-6535(02)00310-7} -} - -@Article{kim2015temporal, - title = {Temporal and Spatial Distribution of Geosmin and 2-{MIB} in the Daecheong Reservoir}, - author = {Kyo-young Kim and Jong-beom Khan and In-chan Choi and Seoun-hwa Hong and Jun-bae Lee and Soo-hyung Lee and Jay-jung Lee}, - year = 2015, - journal = {Korean Journal of Environmental Agriculture}, - volume = 34, - pages = {14--20}, - number = 1 -} - -@Article{kimmel1984factors, - title = {Factors Controlling Primary Production in Lakes and Reservoirs: A Perspective}, - author = {Kimmel, Bruce L and Groeger, Alan W}, - year = 1984, - journal = {Lake and Reservoir Management}, - publisher = {Taylor \& Francis}, - volume = 1, - pages = {277--281}, - number = 1 -} - -@Article{kingsolver2008size, - title = {Size, Temperature, and Fitness: Three Rules}, - author = {Kingsolver, Joel G. and Huey, Raymond B.}, - year = 2008, - month = {Feb}, - journal = {Evolutionary Ecology Research}, - publisher = {Evolutionary Ecology Ltd}, - volume = 10, - pages = {251--268}, - language = {English}, - number = 2, - author-email = {Jgking@bio.unc.edu} -} - -@Article{kinsman1991gas, - title = {Gas Vesicle Collapse by Turgor Pressure and Its Role in Buoyancy Regulation by {{\textit{Anabaena flos-aquae}}}}, - author = {R Kinsman and Bw Ibelings and Ae Walsby}, - year = 1991, - journal = {Journal of General Microbiology}, - volume = 137, - pages = {1171 -- 1178} -} - -@Article{kiorboe1993turbulence, - title = {Turbulence, Phytoplankton Cell Size, and the Structure of Pelagic Food Webs}, - author = {T. Kiørboe}, - year = 1993, - journal = {Advances in Marine Biology}, - publisher = {Academic Press}, - volume = 29, - pages = {1--72}, - url = {http://www.sciencedirect.com/science/article/pii/s0065288108601297}, - doi = {10.1016/s0065-2881(08)60129-7} -} - -@Article{kirk1991volume, - title = {Volume Scattering Function, Average Cosines, and the Underwater Light Field}, - author = {Kirk, John To}, - year = 1991, - journal = {Limnology and Oceanography}, - publisher = {Jstor}, - pages = {455--467} -} - -@Book{kirk1994light, - title = {Light and Photosynthesis in Aquatic Ecosystems}, - author = {Kirk, John T. O.}, - year = 1994, - publisher = {Cambridge University Press}, - doi = {10.1017/cbo9780511623370} -} - -@Book{kirk2011light, - title = {Light and Photosynthesis in Aquatic Ecosystems}, - author = {Kirk, John Thomas Osmond}, - year = 2011, - publisher = {Cambridge University Press} -} - -@Article{kishida2013recent, - title = {Recent Trends in Microorganism-related Off-flavor Problems in Drinking Water Treatment Systems in Japan}, - author = {Naohiro Kishida and Yoshiaki Konno and Kentaro Nemoto and Taisuke Amitani and Akihito Maki and Naoshi Fujimoto and Michihiro Akiba}, - year = 2013, - journal = {Water Science \& Technology}, - volume = 13, - pages = {-}, - number = 5 -} - -@Article{klausmeier2001algal, - title = {Algal Games: the Vertical Distribution of Phytoplankton in Poorly Mixed Water Columns}, - author = {Klausmeier, Christopher A and Litchman, Elena}, - year = 2001, - journal = {Limnology and Oceanography}, - volume = 46, - pages = {1998--2007}, - number = 8 -} - -@Article{klein1973chemotaxonomy, - title = {Chemotaxonomy of the {{\textit{Oscillatoria}}}-{\textit{Phormidium}} Complex}, - author = {Susanne Klein and David J. Chapman and Edward D. Garber}, - year = 1973, - journal = {Biochemical Systematics and Ecology}, - volume = 1, - pages = {173--177}, - url = {http://www.sciencedirect.com/science/article/pii/0305197873900094}, - number = 4, - doi = {10.1016/0305-1978(73)90009-4} -} - -@Article{klemer1982cyanobacterial, - title = {Cyanobacterial Blooms: Carbon and Nitrogen Limitation Have Opposite Effects on the Buoyancy of {{\textit{Oscillatoria}}}}, - author = {Klemer, Ar and Feuillade, J and Feuillade, M and Others}, - year = 1982, - journal = {Science}, - publisher = {American Association for the Advancement of Science}, - volume = 215, - pages = {1629--1631}, - number = 4540 -} - -@Article{klemer1996cyanobacterial, - title = {Cyanobacterial Buoyancy Regulation: the Paradoxical Roles of Carbon}, - author = {Klemer, Andrew R. and Cullen, John J. and Mageau, Michael T. and Hanson, Kathryn M. and Sundell, Richard A.}, - year = 1996, - journal = {Journal of Phycology}, - publisher = {Blackwell Publishing Ltd}, - volume = 32, - pages = {47--53}, - url = {http://dx.doi.org/10.1111/j.0022-3646.1996.00047.x}, - number = 1, - doi = {10.1111/j.0022-3646.1996.00047.x} -} - -@InCollection{kociolek2015bacillariophyceae, - title = {Chapter 16 - Bacillariophyceae: the Raphid Diatoms}, - author = {J. Patrick Kociolek and S.a. Spaulding and R.l. Lowe}, - year = 2015, - booktitle = {Freshwater Algae of North America (second Edition)}, - publisher = {Academic Press}, - pages = {709--772}, - url = {http://www.sciencedirect.com/science/article/pii/b9780123858764000165}, - address = {Boston}, - isbn = {978-0-12-385876-4}, - doi = {10.1016/b978-0-12-385876-4.00016-5} -} - -@InCollection{kociolek2015centric, - title = {Chapter 15 - Centric and Araphid Diatoms}, - author = {J. Patrick Kociolek and Edward C. Theriot, and David M. Williams, and Matthew Julius, and Eugene F. Stoermer, and John C. Kingston}, - year = 2015, - booktitle = {Freshwater Algae of North America (second Edition)}, - publisher = {Academic Press}, - pages = {653--708}, - url = {http://www.sciencedirect.com/science/article/pii/b9780123858764000153}, - address = {Boston}, - isbn = {978-0-12-385876-4}, - doi = {10.1016/b978-0-12-385876-4.00015-3} -} - -@Book{koenker2005quantile, - title = {Quantile Regression}, - author = {Koenker, Roger}, - year = 2005, - publisher = {Cambridge University Press}, - volume = 38 -} - -@Manual{koenker2017quantreg, - title = {Quantreg: Quantile Regression}, - author = {Roger Koenker}, - year = 2017, - url = {https://cran.r-project.org/package=quantreg}, - note = {R Package Version 5.33} -} - -@Article{kolayli2009benthic, - title = {Benthic Algae (except Bacillariophyta) and Their Seasonal Variations in Karagol Lake (bor{\c{c}}ka, Artvin-turkey)}, - author = {Kolayli, Saadet and Sahin, Buelent}, - year = 2009, - journal = {Tr. J. Bot}, - volume = 33, - pages = {27--32} -} - -@Book{komarek1983das, - title = {Das Phytoplankton Des Susswassers 7}, - author = {Komárek, J. and Fott, B.}, - year = 1983, - journal = {Die Binnengew\"{a}sser}, - publisher = {E. Schweizerbart.sche Verlagsbuchhandlung}, - volume = 16, - isbn = 3510400232, - chapter = {Teil: 1 Halfte Chlorophyceae} -} - -@Book{komarek1998cyanoprokaryota, - title = {Cyanoprokaryota 1}, - author = {Komárek, J. and Anagnostidis, K.}, - year = 1998, - journal = {Susswasserflora Von Mitteleuropa}, - publisher = {Deu}, - volume = {19(1)}, - chapter = {Teil: Chroococcales} -} - -@Article{komarek2003coccoid, - title = {Coccoid and Colonial Cyanobacteria}, - author = {Komárek, Jiří}, - year = 2003, - journal = {Freshwater Algae of North America. Ecology and Classification. Academic Press, New York, Ny}, - pages = {59--116} -} - -@InProceedings{komarek2003planktic, - title = {Planktic Oscillatorialean Cyanoprokaryotes (short Review According to Combined Phenotype and Molecular Aspects)}, - author = {Komárek, Jiří}, - year = 2003, - booktitle = {Phytoplankton and Equilibrium Concept: the Ecology of Steady-state Assemblages}, - publisher = {Springer Netherlands}, - pages = {367--382}, - url = {https://link.springer.com/chapter/10.1007/978-94-017-2666-5_30}, - address = {Dordrecht}, - doi = {10.1007/978-94-017-2666-5_30}, - isbn = {978-94-017-2666-5} -} - -@Article{komarek2004taxonomic, - title = {Taxonomic Review of the Cyanoprokaryotic Genera {{\textit{Planktothrix}}} and {{\textit{Planktothricoides}}}}, - author = {Komárek, Jiří and Komárková, Jaroslava }, - year = 2004, - journal = {Czech Phycology}, - volume = 4, - pages = {1--18} -} - -@Article{komarek2014taxonomic, - title = {Taxonomic Classification of Cyanoprokaryotes (cyanobacterial Genera) 2014, Using A Polyphasic Approach}, - author = {Komarek, Jiri and Kastovsky, Jan and Mares, Jan and Johansen, Jeffrey R}, - year = 2014, - journal = {Preslia}, - volume = 86, - pages = {295--335} -} - -@InCollection{komarek2015coccoid, - title = {Chapter 3 - Coccoid Cyanobacteria}, - author = {Jiří Komárek and Jeffrey R. Johansen}, - year = 2015, - booktitle = {Freshwater Algae of North America (second Edition)}, - publisher = {Academic Press}, - pages = {75--133}, - url = {http://www.sciencedirect.com/science/article/pii/b9780123858764000037}, - address = {Boston}, - isbn = {978-0-12-385876-4}, - doi = {10.1016/b978-0-12-385876-4.00003-7} -} - -@InCollection{komarek2015filamentous, - title = {Chapter 4 - Filamentous Cyanobacteria}, - author = {Jiří Komárek and Jeffrey R. Johansen}, - year = 2015, - booktitle = {Freshwater Algae of North America (second Edition)}, - publisher = {Academic Press}, - pages = {135--235}, - url = {http://www.sciencedirect.com/science/article/pii/b9780123858764000049}, - address = {Boston}, - isbn = {978-0-12-385876-4}, - doi = {10.1016/b978-0-12-385876-4.00004-9} -} - -@Article{komarkova2010variability, - title = {Variability of Chroococcus (cyanobacteria) Morphospecies With Regard to Phylogenetic Relationships}, - author = {Kom{\'a}rkov{\'a}, Jarka and Jezberov{\'a}, Jitka and Kom{\'a}rek, Ond{\vr}ej and Zapom{\ve}lov{\'a}, Eli{\vs}ka}, - year = 2010, - journal = {Hydrobiologia}, - publisher = {Springer Netherlands}, - volume = 639, - pages = {69--83}, - url = {http://dx.doi.org/10.1007/s10750-009-0015-3}, - language = {English}, - doi = {10.1007/s10750-009-0015-3} -} - -@Article{komatsu2008identification, - title = {Identification and Functional Analysis of Genes Controlling Biosynthesis of 2-methylisoborneol}, - author = {Komatsu, Mamoru and Tsuda, Muneya and {\-o}mura, Satoshi and Oikawa, Hideaki and Ikeda, Haruo}, - year = 2008, - journal = {Proceedings of the National Academy of Sciences}, - volume = 105, - pages = {7422--7427}, - url = {http://www.pnas.org/content/105/21/7422.abstract}, - number = 21, - doi = {10.1073/pnas.0802312105} -} - -@Article{konopka1982buoyancy, - title = {Buoyancy Regulation and Vertical Migration by {{\textit{Oscillatoria rubescens}}} in Crooked Lake, Indiana}, - author = {Konopka, Allan}, - year = 1982, - journal = {British Phycological Journal}, - volume = 17, - pages = {427--442}, - url = {http://www.tandfonline.com/doi/abs/10.1080/00071618200650451}, - number = 4, - doi = {10.1080/00071618200650451}, - eprint = {http://www.tandfonline.com/doi/pdf/10.1080/00071618200650451} -} - -@Article{koskenniemi2007quantitative, - title = {Quantitative {Real-time PCR} Detection of Toxic {{\textit{Nodularia}}} Cyanobacteria in the {Baltic Sea}}, - author = {Koskenniemi, Kerttu and Lyra, Christina and Rajaniemi-wacklin, Pirjo and Jokela, Jouni and Sivonen, Kaarina}, - year = 2007, - journal = {Applied and Environmental Microbiology}, - volume = 73, - pages = {2173--2179}, - url = {http://aem.asm.org/content/73/7/2173.abstract}, - number = 7, - doi = {10.1128/aem.02746-06} -} - -@Article{kozak2004zooplankton, - title = {Zooplankton Versus Phyto- and Bacterioplankton in the Malta{\'n}ski Reservoir (poland) During An Extensive Biomanipulation Experiment}, - author = {Kozak, Anna and Go{\l}dyn, Ryszard}, - year = 2004, - journal = {Journal of Plankton Research}, - volume = 26, - pages = {37--48}, - url = {http://plankt.oxfordjournals.org/content/26/1/37.abstract}, - number = 1, - doi = {10.1093/plankt/fbh006}, - eprint = {http://plankt.oxfordjournals.org/content/26/1/37.full.pdf+html} -} - -@Article{kozich2013development, - title = {Development of A Dual-index Sequencing Strategy and Curation Pipeline for Analyzing Amplicon Sequence Data on the Miseq Illumina Sequencing Platform}, - author = {Kozich, James J. and Westcott, Sarah L. and Baxter, Nielson T. and Highlander, Sarah K. and Schloss, Patrick D.}, - year = 2013, - journal = {Applied and Environmental Microbiology}, - url = {http://aem.asm.org/content/early/2013/06/17/aem.01043-13.abstract}, - doi = {10.1128/aem.01043-13} -} - -@Article{krasner1989free, - title = {Free Chlorine Versus Monochloramine for Controlling Off-tastes and Off-odors}, - author = {Krasner, Stuart W. and Barrett, Sylvia E. and Dale, Melissa S. and Hwang, Cordelia J.}, - year = 1989, - journal = {American Water Works Association}, - volume = 81, - pages = {86--93}, - url = {http://www.awwa.org/publications/journal-awwa/abstract/articleid/12166.aspx}, - number = 2 -} - -@Article{krasznai2010characteristics, - title = {Characteristics of the Pelagic Phytoplankton in Shallow Oxbows}, - author = {Krasznai, Enik{\"o} and Borics, G{\'a}bor and V{\'a}rb{\'i}r{\'o}, G{\'a}bor and Abonyi, Andr{\'a}s and Padis{\'a}k, Judit and De{\'a}k, Csaba and T{'o}thm{\'e}r{\'e}sz, B{\'e}la}, - year = 2010, - journal = {Hydrobiologia}, - publisher = {Springer Netherlands}, - volume = 639, - pages = {173--184}, - url = {http://dx.doi.org/10.1007/s10750-009-0027-z}, - language = {English}, - doi = {10.1007/s10750-009-0027-z} -} - -@Article{krienitz2002cyanotoxin, - title = {Cyanotoxin-producing Bloom of {{\textit{Anabaena flos-aquae}}}, {{\textit{Anabaena Discoidea}}} and {{\textit{Microcystis aeruginosa}}} (cyanobacteria) in {Nyanza Gulf} of {Lake Victoria, Kenya}}, - author = {Krienitz, L and Ballot, A and Wiegand, C and Kotut, K and Codd, Ga and Pflugmacher, S}, - year = 2002, - journal = {Journal of Applied Botany-angewandte Botanik}, - publisher = {Blackwell Verlag Gmbh}, - volume = 76, - pages = {179--183}, - language = {English}, - number = {5--6}, - journal-iso = {J. Appl. Bot.-angew. Bot.} -} - -@InCollection{krishnani2008reviews, - title = {Microbially Derived Off-flavor From Geosmin and 2-methylisoborneol: Sources and Remediation}, - author = {Krishnani, Kishorekumar and Ravichandran, Pitchaiyappan and Ayyappan, Subbanna}, - year = 2008, - booktitle = {Reviews of Environmental Contamination and Toxicology}, - publisher = {Springer New York}, - volume = 194, - pages = {1--27}, - url = {http://dx.doi.org/10.1007/978-0-387-74816-0_1}, - isbn = {978-0-387-74815-3}, - doi = {10.1007/978-0-387-74816-0_1} -} - -@Article{kruk2010morphological, - title = {A Morphological Classification Capturing Functional Variation in Phytoplankton}, - author = {Kruk, Carla and Huszar, Vera L. M. and Peeters, Edwin T. H. M. and Bonilla, Sylvia and Costa, Luciana and Lürling, Miquel and Reynolds, Colin S. and Scheffer, Marten}, - year = 2010, - journal = {Freshwater Biology}, - publisher = {Blackwell Publishing Ltd}, - volume = 55, - pages = {614--627}, - url = {http://dx.doi.org/10.1111/j.1365-2427.2009.02298.x}, - number = 3, - doi = {10.1111/j.1365-2427.2009.02298.x} -} - -@Article{kuosa1991bloom, - title = {A Bloom of the Blue-green Alga {{\textit{Anabaena Lemmermannii-var-minor}}} Nostocophyceae in the Gennarbyviken Fresh-water Reservoir Southern Finland}, - author = {Kuosa, H.}, - year = 1991, - journal = {Memoranda Societatis Pro Fauna Et Flora Fennica}, - volume = 67, - pages = {147--149} -} - -@Article{kurek2013multi, - title = {Multi-objective Optimization of Water Quality, Pumps Operation, and Storage Sizing of Water Distribution Systems}, - author = {Wojciech Kurek and Avi Ostfeld}, - year = 2013, - journal = {Journal of Environmental Management}, - volume = 115, - pages = {189--197}, - url = {http://www.sciencedirect.com/science/article/pii/s0301479712006159}, - doi = {10.1016/j.jenvman.2012.11.030} -} - -@Article{kurmayer2001competitive, - title = {Competitive Ability of Daphnia Under Dominance of Non-toxic Filamentous Cyanobacteria}, - author = {Kurmayer, Rainer}, - year = 2001, - month = {Jan}, - journal = {Hydrobiologia}, - volume = 442, - pages = {279--289}, - url = {https://doi.org/10.1023/a:1017598518952}, - number = 1, - doi = {10.1023/a:1017598518952} -} - -@Article{kurmayer2003abundance, - title = {The Abundance of Microcystin-producing Genotypes Correlates Positively With Colony Size in {{\textit{Microcystis}}}~sp. and Determines Its Microcystin Net Production in {Lake Wannsee}}, - author = {Kurmayer, Rainer and Christiansen, Guntram and Chorus, Ingrid}, - year = 2003, - journal = {Applied and Environmental Microbiology}, - volume = 69, - pages = {787--795}, - url = {http://aem.asm.org/content/69/2/787.abstract}, - number = 2, - doi = {10.1128/aem.69.2.787-795.2003} -} - -@Article{kurmayer2003application, - title = {Application of {Real-time PCR} for Quantification of Microcystin Genotypes in A Population of the Toxic Cyanobacterium {{\textit{Microcystis}}} sp.}, - author = {Kurmayer, Rainer and Kutzenberger, Thomas}, - year = 2003, - journal = {Applied and Environmental Microbiology}, - volume = 69, - pages = {6723--6730}, - url = {http://aem.asm.org/content/69/11/6723.abstract}, - number = 11, - doi = {10.1128/aem.69.11.6723-6730.2003} -} - -@Article{kutovaya2014development, - title = {Development and Application of A Molecular Assay to Detect and Monitor Geosmin-producing Cyanobacteria and Actinomycetes in the Great Lakes}, - author = {Olga A. Kutovaya and Sue B. Watson}, - year = 2014, - journal = {Journal of Great Lakes Research}, - volume = 40, - pages = {404--414}, - url = {http://www.sciencedirect.com/science/article/pii/s0380133014000720}, - number = 2, - doi = {10.1016/j.jglr.2014.03.016} -} - -@Article{kwak1994contingent, - title = {Contingent Valuation in Korean Environmental Planning: A Pilot Application to the Protection of Drinking Water Quality in Seoul}, - author = {Kwak, Seung-jun and Russell, Cliffords.}, - year = 1994, - journal = {Environmental and Resource Economics}, - publisher = {Kluwer Academic Publishers}, - volume = 4, - pages = {511--526}, - url = {http://dx.doi.org/10.1007/bf00691926}, - language = {English}, - doi = {10.1007/bf00691926} -} - -@Article{lange2000isoprenoid, - title = {Isoprenoid Biosynthesis: the Evolution of Two Ancient and Distinct Pathways Across Genomes}, - author = {Lange, B. Markus and Rujan, Tamas and Martin, William and Croteau, Rodney}, - year = 2000, - journal = {Proceedings of the National Academy of Sciences}, - publisher = {National Academy of Sciences}, - volume = 97, - pages = {13172--13177}, - url = {https://www.pnas.org/content/97/24/13172}, - number = 24, - doi = {10.1073/pnas.240454797} -} - -@Article{langille2013predictive, - title = {Predictive Functional Profiling of Microbial Communities Using 16s Rrna Marker Gene Sequences}, - author = {Langille, Morgan Gi and Zaneveld, Jesse and Caporaso, J Gregory and Mcdonald, Daniel and Knights, Dan and Reyes, Joshua A and Clemente, Jose C and Burkepile, Deron E and Thurber, Rebecca L Vega and Knight, Rob and Others}, - year = 2013, - journal = {Nature Biotechnology}, - publisher = {Nature Publishing Group}, - volume = 31, - pages = {814--821}, - number = 9 -} - -@Article{lebret2012grazing, - title = {Grazing Resistance Allows Bloom Formation and May Explain Invasion Success of Gonyostomum Semen}, - author = {Lebret, K. and Fern{\'a}ndez Fern{\'a}ndez, M. and Hagman, C. H. C. and Rengefors, K. and Hansson, L. A.}, - year = 2012, - journal = {Limnology and Oceanography}, - volume = 57, - pages = 727, - number = 3 -} - -@Article{lee2017novel, - title = {Novel Primer Sets for Next Generation Sequencing-based Analyses of Water Quality}, - author = {Lee, Elvina and Khurana, Maninder S. and Whiteley, Andrew S. and Monis, Paul T. and Bath, Andrew and Gordon, Cameron and Ryan, Una M. and Paparini, Andrea}, - year = 2017, - month = 01, - journal = {Plos One}, - publisher = {Public Library of Science}, - volume = 12, - pages = {1--17}, - url = {https://doi.org/10.1371/journal.pone.0170008}, - number = 1, - doi = {10.1371/journal.pone.0170008} -} - -@Article{legendre2001ecologically, - title = {Ecologically Meaningful Transformations for Ordination of Species Data}, - author = {Legendre, Pierre and Gallagher, Eugened.}, - year = 2001, - journal = {Oecologia}, - publisher = {Springer-verlag}, - volume = 129, - pages = {271--280}, - url = {http://dx.doi.org/10.1007/s004420100716}, - number = 2, - doi = {10.1007/s004420100716}, - language = {English} -} - -@Article{legnani2005planktothrix, - title = {{\textit{Planktothrix rubescens}}’ Seasonal Dynamics and Vertical Distributtion in {Lake Pusiano} ({North Italy})}, - author = {Elena Legnani and Diego Copetti and Alessandrsandro Oggioni and Gianni Tartari and Maria Teresa Palumbo and Giuseppe Morabito}, - year = 2005, - journal = {Journal of Limnology}, - url = {http://jlimnol.it/index.php/jlimnol/article/view/jlimnol.2005.61}, - limnologyvolume = 64, - number = 1, - doi = {10.4081/jlimnol.2005.61} -} - -@Article{lehman2000influence, - title = {The Influence of Climate on Phytoplankton Community Biomass in San Francisco Bay Estuary}, - author = {Lehman, Pw}, - year = 2000, - journal = {Limnology and Oceanography}, - volume = 45, - pages = {580--590}, - number = 3 -} - -@Article{lehman2008influence, - title = {The Influence of Environmental Conditions on the Seasonal Variation of {{\textit{Microcystis}}} Cell Density and Microcystins Concentration in {San Francisco Estuary}}, - author = {Lehman, P.w. and Boyer, G. and Satchwell, M. and Waller, S.}, - year = 2008, - journal = {Hydrobiologia}, - publisher = {Springer Netherlands}, - volume = 600, - pages = {187--204}, - url = {http://dx.doi.org/10.1007/s10750-007-9231-x}, - language = {English}, - doi = {10.1007/s10750-007-9231-x} -} - -@Article{leibold1997do, - title = {Do Nutrient-competition Models Predict Nutrient Availabilities in Limnetic Ecosystems?}, - author = {Leibold, Mathew A.}, - year = 1997, - journal = {Oecologia}, - publisher = {Springer-verlag}, - volume = 110, - pages = {132--142}, - url = {http://dx.doi.org/10.1007/s004420050141}, - language = {English}, - doi = {10.1007/s004420050141} -} - -@Article{leibold2004biodiversity, - title = {Biodiversity in Metacommunities: Plankton As Complex Adaptive Systems?}, - author = {Leibold, M. A. and Norberg, J.}, - year = 2004, - month = {Jul}, - journal = {Limnology and Oceanography}, - publisher = {Amer Soc Limnology Oceanography}, - volume = 49, - pages = {1278--1289}, - language = {English}, - number = 4 -} - -@Article{leland2001distribution, - title = {Distribution of Algae in the San Joaquin River, California, in Relation to Nutrient Supply, Salinity and Other Environmental Factors}, - author = {Leland, Harry V. and Brown, Larry R. and Mueller, David K.}, - year = 2001, - journal = {Freshwater Biology}, - publisher = {Blackwell Science Ltd}, - volume = 46, - pages = {1139--1167}, - url = {http://dx.doi.org/10.1046/j.1365-2427.2001.00740.x}, - number = 9, - doi = {10.1046/j.1365-2427.2001.00740.x} -} - -@Article{levin1998ecosystems, - title = {Ecosystems and the Biosphere As Complex Adaptive Systems}, - author = {Levin, Simon A.}, - year = 1998, - journal = {Ecosystems}, - publisher = {Springer-verlag}, - volume = 1, - pages = {431--436}, - url = {http://dx.doi.org/10.1007/s100219900037}, - language = {English}, - doi = {10.1007/s100219900037} -} - -@Article{lewis1976surface, - title = {Surface/volume Ratio: Implications for Phytoplankton Morphology}, - author = {Lewis, William M.}, - year = 1976, - journal = {Science}, - publisher = {American Association for the Advancement of Science}, - volume = 192, - pages = {885--887}, - number = 4242 -} - -@Article{lewis2004numerical, - title = {Numerical Models for Management of {{\textit{Anabaena Circinalis}}}}, - author = {Lewis, David M. and Brookes, Justin D. and Lambert, Martin F.}, - year = 2004, - month = {Dec}, - journal = {Journal of Applied Phycology}, - volume = 16, - pages = {457--468}, - url = {https://doi.org/10.1007/s10811-004-5506-z}, - number = 6, - doi = {10.1007/s10811-004-5506-z} -} - -@Article{li2000xiang, - title = {湘西北蜡梅群落主要种群生态位的初步研究}, - author = {李菁 and 陈功锡 and 朱杰英}, - year = 2000, - journal = {武汉植物学研究}, - volume = 18, - pages = {109--114}, - number = 2, - language = {Zh} -} - -@Article{li2004analysis, - title = {Analysis and Strategy of the Eutrophication Pollution Loading in Yanghe Reservoir}, - author = {Dai, Li and Li, Fengbin}, - year = 2004, - journal = {Water Sciences and Engineering Technology (in Chinese)}, - pages = {39--40}, - number = 006 -} - -@Article{li2005isolation, - title = {Isolation and Characterization of A Novel Antialgal Allelochemical From Phragmites Communis}, - author = {Li, Feng-min and Hu, Hong-ying}, - year = 2005, - journal = {Applied and Environmental Microbiology}, - volume = 71, - pages = {6545--6553}, - url = {http://aem.asm.org/content/71/11/6545.abstract}, - number = 11, - doi = {10.1128/aem.71.11.6545-6553.2005} -} - -@Article{li2006hua, - title = {化感物质对小球藻抗氧化体系酶活性的影响}, - author = {李锋民 and 胡洪英 and 门玉洁}, - year = 2006, - journal = {环境科学}, - volume = 27, - pages = {2091--2094}, - number = 10, - language = {Zh} -} - -@Article{li2007annual, - title = {Annual Dynamics and Origins of the Odorous Compounds in the Pilot Experimental Area of Lake Dianchi, {China}}, - author = {Li, L and Wan, N and Gan, Na and Xia, B and Song, L}, - year = 2007, - journal = {Water Science \& Technology}, - volume = 55, - pages = {43--50}, - number = 5 -} - -@Article{li2007miyun, - title = {密云水库东西库区的水质与浮游藻类分析}, - author = {李慧敏 and 孟凡艳 and 杜桂森等}, - year = 2007, - journal = {湖泊科学}, - volume = 19, - pages = {146--150}, - number = 02, - language = {Zh} -} - -@Article{li2007yang, - title = {洋河水库富营养化评价及防治对策}, - author = {李文奇 and 蔡金傍 and 逄勇等}, - year = 2007, - journal = {水资源保护}, - volume = 23, - pages = {16--20}, - number = 02, - language = {Zh} -} - -@Article{li2008dissolved, - title = {Dissolved Trace Elements and Heavy Metals in the Danjiangkou Reservoir, {China}}, - author = {Li, Siyue and Xu, Zhifang and Cheng, Xiaoli and Zhang, Quanfa}, - year = 2008, - journal = {Environmental Geology}, - publisher = {Springer-verlag}, - volume = 55, - pages = {977--983}, - url = {http://dx.doi.org/10.1007/s00254-007-1047-5}, - number = 5, - doi = {10.1007/s00254-007-1047-5}, - language = {English} -} - -@Article{li2008jin, - title = {金鱼藻与铜绿微囊藻共生情况下的化感作用}, - author = {李小路 and 潘慧云 and 徐洁 and 等}, - year = 2008, - journal = {环境科学学报}, - volume = 28, - pages = {2243--2249}, - number = 11, - language = {Zh} -} - -@Book{li2008miyun, - title = {Algal Population Dynamics and Occurrence of Harmful Metabolites in the Typical North {China} Source Water Reservoirs}, - author = {Li, Zonglai}, - year = 2008, - publisher = {Graduate University of Chinese Academy of Sciences} -} - -@Article{li2009fuzzy, - title = {A Fuzzy Analytic Hierarchy Process (fahp) Approach to Eco-environmental Vulnerability Assessment for the Danjiangkou Reservoir Area, {China}}, - author = {Lu Li and Zhi-hua Shi and Wei Yin and Dun Zhu and Sai Leung Ng and Chong-fa Cai and A-lin Lei}, - year = 2009, - journal = {Ecological Modelling}, - volume = 220, - pages = {3439--3447}, - url = {http://www.sciencedirect.com/science/article/pii/s0304380009006139}, - number = 23, - doi = {10.1016/j.ecolmodel.2009.09.005} -} - -@Article{li2009spatial, - title = {Spatial and Temporal Patterns of the Water Quality in the Danjiangkou Reservoir, {China}}, - author = {Li, Siyue and Cheng, Xiaoli and Xu, Zhifang and Han, Hongyin and Zhang, Quanfa}, - year = 2009, - journal = {Hydrological Sciences Journal}, - publisher = {Taylor \& Francis}, - volume = 54, - pages = {124--134}, - number = 1 -} - -@Article{li2009wo, - title = {我国应用水中嗅味问题及其研究发展}, - author = {李勇 and 张晓健 and 陈超}, - year = 2009, - journal = {环境科学}, - volume = 30, - pages = {583--588}, - number = 02, - language = {Zh} -} - -@Article{li2010cyanobacterial, - title = {Cyanobacterial Population and Harmful Metabolites Dynamics During A Bloom in Yanghe Reservoir, North {China}}, - author = {Li, Zonglai and Yu, Jianwei and Yang, Min and Zhang, Jing and Burch, Michael D. and Han, Wei}, - year = 2010, - journal = {Harmful Algae}, - volume = 9, - pages = {481--488}, - url = {http://www.sciencedirect.com/science/article/pii/s1568988310000260}, - number = 5, - doi = {10.1016/j.hal.2010.03.003} -} - -@MastersThesis{li2010dan, - title = {淡水藻的分离纯化与培养及藻体内生化成分的测定研究}, - author = {李珍宁}, - school = {华中农业大学}, - year = 2010 -} - -@Article{li2010fuhe, - title = {复合除藻剂灭藻效能及其机理}, - author = {李星 and 赵亮 and 杨艳玲 and 郭利霞 and 庞雅丽}, - year = 2010, - volume = 36, - pages = {1402--1407}, - journaltitle = {北京工业大学学报}, - number = 10, - language = {Zh} -} - -@Article{li2012characterization, - title = {Characterization of Intracellular \& Extracellular Algae Organic Matters (aom) of Microcystic aeruginosa and Formation of Aom-associated Disinfection Byproducts and Odor \& Taste Compounds}, - author = {Lei Li and Naiyun Gao and Yang Deng and Juanjuan Yao and Kejia Zhang}, - year = 2012, - journal = {Water Research}, - volume = 46, - pages = {1233--1240}, - url = {http://www.sciencedirect.com/science/article/pii/s0043135411007986}, - number = 4, - doi = {10.1016/j.watres.2011.12.026} -} - -@Article{li2012earthy, - title = {Earthy Odor Compounds Production and Loss in Three Cyanobacterial Cultures}, - author = {Zonglai Li and Peter Hobson and Wei An and Michael D. Burch and Jenny House and Min Yang}, - year = 2012, - journal = {Water Research}, - volume = 46, - pages = {5165--5173}, - url = {http://www.sciencedirect.com/science/article/pii/s0043135412004046}, - number = 16, - doi = {10.1016/j.watres.2012.06.008} -} - -@Article{li2012estimating, - title = {Estimating Spatial Variation in the Abundance of Potential Microcystin-producing {{\textit{Microcystis}}} spp.~using {Real-time PCR} During Summer Bloom in {Lake Taihu}}, - author = {Daming Li and Zhen Yang and Yuhong Jia and Xiao Li Shi and Fanxiang Kong}, - year = 2012, - journal = {Acta Ecologica Sinica}, - volume = 32, - pages = {285--290}, - url = {http://www.sciencedirect.com/science/article/pii/s1872203212000467}, - number = 6, - doi = {10.1016/j.chnaes.2012.07.005} -} - -@Article{li2013effect, - title = {Effect of Flow Velocity on Phytoplankton Biomass and Composition in A Freshwater Lake}, - author = {Feipeng Li and Haiping Zhang and Yiping Zhu and Yihua Xiao and Ling Chen}, - year = 2013, - journal = {Science of the Total Environment}, - volume = 447, - pages = {64--71}, - url = {http://www.sciencedirect.com/science/article/pii/s0048969712016233}, - doi = {10.1016/j.scitotenv.2012.12.066} -} - -@Article{li2013improved, - title = {Improved Yangtze River Diversions: Are They Helping to Solve Algal Bloom Problems in {Lake Taihu}, {China}?}, - author = {Yiping Li and Chunyan Tang and Chao Wang and Desmond O. Anim and Zhongbo Yu and Kumud Acharya}, - year = 2013, - journal = {Ecological Engineering}, - volume = 51, - pages = {104--116}, - url = {http://www.sciencedirect.com/science/article/pii/s0925857412004326}, - number = 0, - doi = {10.1016/j.ecoleng.2012.12.077} -} - -@Article{li2013nian, - title = {20年来密云水库主要入库河流总氮变化趋势和影响因素}, - author = {李文赞 and 李叙勇 and 王晓学}, - year = 2013, - journal = {环境科学学报}, - volume = 33, - pages = {3047--3052}, - number = 11, - language = {Zh} -} - -@MastersThesis{li2015di, - title = {低温期黄河水源中致嗅原因解析}, - author = {李霞}, - school = {中国科学院大学}, - year = 2015, - language = {Zh} -} - -@Article{li2016an, - title = {An Overview of Diversity, Occurrence, Genetics and Toxin Production of Bloom-forming Dolichospermum (anabaena) Species}, - author = {Xiaochuang Li and Theo W. Dreher and Renhui Li}, - year = 2016, - journal = {Harmful Algae}, - volume = 54, - pages = {54--68}, - url = {http://www.sciencedirect.com/science/article/pii/s1568988315301050}, - note = {Global Expansion of Harmful Cyanobacterial Blooms: Diversity, Ecology, Causes, and Controls}, - doi = {10.1016/j.hal.2015.10.015} -} - -@Article{li2016overview, - title = {An Overview of Diversity, Occurrence, Genetics and Toxin Production of Bloom-forming {{\textit{Dolichospermum}}} ({\textit{Anabaena}}) Species}, - author = {Xiaochuang Li and Theo W. Dreher and Renhui Li}, - year = 2016, - journal = {Harmful Algae}, - volume = 54, - pages = {54--68}, - url = {http://www.sciencedirect.com/science/article/pii/s1568988315301050}, - note = {Global Expansion of Harmful Cyanobacterial Blooms: Diversity, Ecology, Causes, and Controls}, - doi = {10.1016/j.hal.2015.10.015} -} - -@PhDThesis{li2016si, - title = {丝状蓝藻拟柱孢藻、尖头藻和拟圆孢藻的分类学和分子多样性研究}, - author = {李小闯 and 李仁辉}, - school = {中国科学院大学}, - year = 2016 -} - -@Article{li2016source, - title = {Source-water Odor During Winter in the Yellow River Area of {China}: Occurrence and Diagnosis}, - author = {Xia Li and Jianwei Yu and Qingyuan Guo and Ming Su and Tingting Liu and Min Yang and Yu Zhao}, - year = 2016, - journal = {Environmental Pollution}, - volume = 218, - pages = {252--258}, - url = {http://www.sciencedirect.com/science/article/pii/s0269749116305577}, - doi = {10.1016/j.envpol.2016.06.069}, - other = {author4} -} - -@PhDThesis{li2017jiann, - title = {减少氮输入对亚热带湖泊藻类群落影响的实验湖沼学研究}, - author = {李艳 and 王洪涛}, - school = {中国科学院大学}, - year = 2017 -} - -@PhDThesis{li2018ren, - title = {人工构建试验水池中蓝藻水华的诱导及其动态演替的研究}, - author = {李小栋 and 孔任秋}, - school = {中国科学院大学}, - year = 2018 -} - -@Article{li2019attribution, - title = {Attribution of Lake Warming in Four Shallow Lakes in the Middle and Lower Yangtze River Basin}, - author = {Li, Xinyu and Peng, Shushi and Deng, Xuwei and Su, Ming and Zeng, Hui}, - year = 2019, - journal = {Environmental Science \& Technology}, - volume = 53, - pages = {12548--12555}, - url = {https://doi.org/10.1021/acs.est.9b03098}, - number = 21, - doi = {10.1021/acs.est.9b03098}, - note = {Pmid: 31600439}, - eprint = {https://doi.org/10.1021/acs.est.9b03098} -} - -@Article{li2019variation, - title = {Variation and Removal of 2-{MIB} in Full-scale Treatment Plants With Source Water From {Lake Tai}, {China}}, - author = {Lei Li and Sihui Yang and Shuili Yu and Yanan Zhang}, - year = 2019, - journal = {Water Research}, - volume = 162, - pages = {180--189}, - url = {http://www.sciencedirect.com/science/article/pii/s0043135419305792}, - doi = {10.1016/j.watres.2019.06.066} -} - -@Article{liang2004china, - title = {China's Floating Population: New Evidence From the 2000 Census}, - author = {Liang, Zai and Ma, Zhongdong}, - year = 2004, - journal = {Population and Development Review}, - publisher = {Wiley Online Library}, - volume = 30, - pages = {467--488}, - number = 3 -} - -@Article{liang2005removal, - title = {Removal of Eathy-must Odorants in Drinking Water by Powdered Activated Carbon}, - author = {Liang, C. and Wang, D. and Yang, M. and Sun, W. and Zhang, S.}, - year = 2005, - journal = {Journal of Environmental Science and Health}, - volume = 40, - pages = {767--778}, - url = {http://www.tandfonline.com/doi/abs/10.1081/ese-200048262}, - number = 4, - doi = {10.1081/ese-200048262}, - eprint = {http://www.tandfonline.com/doi/pdf/10.1081/ese-200048262} -} - -@Article{liang2007zhe, - title = {遮光围隔中铜绿微囊藻的时空分布特征}, - author = {梁瑜 and 陈雪初 and 孔海南 and 吴德意 and 黄莹莹}, - year = 2007, - journal = {中国环境科学}, - volume = 27, - pages = {821--825}, - number = 6, - language = {Zh} -} - -@Article{liang2018large, - title = {Large‐scale Restoration Increases Carbon Stability Under Projected Climate and Wildfire Regimes}, - author = {Shuang Liang and Matthew D Hurteau and Anthony L Westerling}, - year = 2018, - journal = {Frontiers in Ecology and the Environment}, - volume = 0, - url = {https://esajournals.onlinelibrary.wiley.com/doi/abs/10.1002/fee.1791}, - number = 0, - doi = {10.1002/fee.1791}, - eprint = {https://esajournals.onlinelibrary.wiley.com/doi/pdf/10.1002/fee.1791} -} - -@Article{liboriussen2003temporal, - title = {Temporal Dynamics in Epipelic, Pelagic and Epiphytic Algal Production in A Clear and A Turbid Shallow Lake}, - author = {Liboriussen, L. and Jeppesen, E.}, - year = 2003, - journal = {Freshwater Biology}, - publisher = {Wiley Online Library}, - volume = 48, - pages = {418--431}, - url = {http://dx.doi.org/10.1046/j.1365-2427.2003.01018.x}, - number = 3, - doi = {10.1046/j.1365-2427.2003.01018.x} -} - -@Book{lin1977tastes, - title = {Tastes and Odors in Water Supplies: A Review}, - author = {Lin, Sd}, - year = 1977, - publisher = {Illinois State Water Survey} -} - -@Article{lin2002correlation, - title = {Correlation of Musty Odor and 2-{MIB} in Two Drinking Water Treatment Plants in South Taiwan}, - author = {Tsair-Fuh Lin and Jiun-Yue Wong and Hsiao-Pin Kao}, - year = 2002, - journal = {Science of the Total Environment}, - volume = 289, - pages = {225--235}, - url = {http://www.sciencedirect.com/science/article/pii/S004896970101049X}, - number = 1, - doi = {10.1016/S0048-9697(01)01049-X} -} - -@Article{lin2003effect, - title = {Effect of Residual Chlorine on the Analysis of Geosmin, 2-{MIB} and MTBE in Drinking Water Using the SPME Technique}, - author = {Tsair-Fuh Lin and Chia-Ling Liu and Feng-Chen Yang and Hsu-Wen Hung}, - year = 2003, - journal = {Water Research}, - volume = 37, - pages = {21--26}, - url = {http://www.sciencedirect.com/science/article/pii/S0043135402002518}, - number = 1, - doi = {10.1016/S0043-1354(02)00251-8} -} - -@Article{lin2008wo, - title = {我国水华蓝藻的新类群——阿氏浮丝藻(planktothrix agardhii)生理特性}, - author = {林燊 and 彭欣 and 吴忠兴 and 李仁辉}, - year = 2008, - volume = 2008, - pages = {437--442}, - journaltitle = {湖泊科学}, - number = 04 -} - -@PhDThesis{lin2011si, - title = {丝状水华蓝藻多样性及生态应用研究}, - author = {林燊 and 李仁辉}, - school = {中国科学院研究生院}, - year = 2011 -} - -@Book{lin2019taste, - title = {{taste and Odour in Source and Drinking Water: Causes, Controls, and Consequences}}, - author = {Lin, Tsair-fuh and Watson, Susan and Dietrich, Andrea M. and Suffet, I. H. (mel)}, - year = 2019, - month = 03, - publisher = {Iwa Publishing}, - url = {https://doi.org/10.2166/9781780406664}, - isbn = 9781780406664, - doi = {10.2166/9781780406664} -} - -@Book{ling2000australian, - title = {Australian Freshwater Algae (exclusive of Diatoms)}, - author = {H. U. Ling and Peter A. Tyler}, - year = 2000, - month = 04, - journal = {Bibliotheca Phycologica}, - publisher = {J. Cramer in Der Gebrueder Borntraeger Verlagsbuchhandlung}, - volume = 5, - pages = {1--643}, - url = {http://www.schweizerbart.de//publications/detail/isbn/9783443600327/australian\_freshwater\_algae\_exclusive\_of\_diatoms}, - isbn = {3-443-60032-8}, - address = {Antarctic Division, Channel Highway, Kingston, Tas, 7050, {USA}} -} - -@Article{litchman2001competition, - title = {Competition of Phytoplankton Under Fluctuating Light}, - author = {Litchman, Elena and Klausmeier, Christopher A.}, - year = 2001, - journal = {The American Naturalist}, - publisher = {The University of Chicago Press for the American Society of Naturalists}, - volume = 157, - pages = {Pp. 170--187}, - url = {http://www.jstor.org/stable/10.1086/318628}, - jstor_articletype = {research-article}, - number = 2, - language = {English} -} - -@Article{litchman2003competition, - title = {Competition and Coexistence of Phytoplankton Under Fluctuating Light: Experiments With Two Cyanobacteria}, - author = {Litchman, E}, - year = 2003, - month = {Apr 3}, - journal = {Aquatic Microbial Ecology}, - volume = 31, - pages = {241--248}, - number = 3, - doi = {10.3354/ame031241} -} - -@Article{litchman2007role, - title = {The Role of Functional Traits and Trade-offs in Structuring Phytoplankton Communities: Scaling From Cellular to Ecosystem Level}, - author = {Litchman, Elena and Klausmeier, Christopher A. and Schofield, Oscar M. and Falkowski, Paul G.}, - year = 2007, - journal = {Ecology Letters}, - publisher = {Blackwell Publishing Ltd}, - volume = 10, - pages = {1170--1181}, - url = {http://dx.doi.org/10.1111/j.1461-0248.2007.01117.x}, - number = 12, - doi = {10.1111/j.1461-0248.2007.01117.x} -} - -@Article{litchman2008trait, - title = {Trait-based Community Ecology of Phytoplankton}, - author = {Litchman, Elena and Klausmeier, Christopher A}, - year = 2008, - journal = {Annual Review of Ecology, Evolution, and Systematics}, - publisher = {Annual Reviews}, - volume = 39, - pages = {615--639} -} - -@Article{litchman2010linking, - title = {Linking Traits to Species Diversity and Community Structure in Phytoplankton}, - author = {Litchman, Elena and De Tezanos Pinto, Paula and Klausmeier, Christophera. and Thomas, Mridulk. and Yoshiyama, Kohei}, - year = 2010, - journal = {Hydrobiologia}, - publisher = {Springer Netherlands}, - volume = 653, - pages = {15--28}, - url = {http://dx.doi.org/10.1007/s10750-010-0341-5}, - language = {English}, - number = 1, - doi = {10.1007/s10750-010-0341-5} -} - -@Article{liu2001hu, - title = {湖南茶陵普通野生水稻保护区优势种的空间分布和生态位分析}, - author = {刘贵华 and 王海洋 and 周进}, - year = 2001, - journal = {植物生态学报}, - volume = 25, - pages = {65--70}, - number = 1, - language = {Zh} -} - -@Article{liu2001shui, - title = {水库生态学特征与水库水质可持续管理方法}, - author = {刘顺会 and 谢涤非 and 付翔 and 胡韧 and 林秋奇}, - year = 2001, - journal = {华南师范大学学报}, - volume = 2, - pages = {121--126}, - number = 2, - language = {Zh} -} - -@Article{liu2002south, - title = {South-to-north Water Transfer Schemes for {China}}, - author = {Liu, Changming and Zheng, Hongxing}, - year = 2002, - journal = {International Journal of Water Resources Development}, - volume = 18, - pages = {453--471}, - url = {http://dx.doi.org/10.1080/0790062022000006934}, - number = 3, - doi = {10.1080/0790062022000006934}, - eprint = {http://dx.doi.org/10.1080/0790062022000006934} -} - -@Article{liu2003mechanistic, - title = {Mechanistic Studies of the Photocatalytic Oxidation of Microcystin-lr:?an Investigation of Byproducts of the Decomposition Process}, - author = {Liu, Iain and Lawton, Linda A. and Robertson, Peter K. J.}, - year = 2003, - journal = {Environmental Science \& Technology}, - volume = 37, - pages = {3214--3219}, - url = {http://pubs.acs.org/doi/abs/10.1021/es0201855}, - number = 14, - note = {Pmid: 12901672}, - doi = {10.1021/es0201855}, - eprint = {http://pubs.acs.org/doi/pdf/10.1021/es0201855} -} - -@Article{liu2004miyun, - title = {密云水库的浮游生物群落}, - author = {刘静 and 杜桂森 and 刘晓端等}, - year = 2004, - journal = {西北植物学报}, - volume = 24, - pages = 08, - language = {Zh} -} - -@Article{liu2004study, - title = {A Study of Treatment of Water From {Miyun Reservoir} by Dissolved Air Floatation Process}, - author = {Yang Liu and Sheng Zhang and Xiaojian Zhang}, - year = 2004, - journal = {Industrial Water and Wastewater (in Chinese)}, - volume = 35, - pages = {17--20}, - number = 6 -} - -@Article{liu2005ph, - title = {Ph 值对淡水藻类生长和种类变化的影响}, - author = {刘春光 and 金相灿 and 孙凌等}, - year = 2005, - journal = {农业环境科学学报}, - volume = 24, - pages = {294--298}, - number = 2, - language = {Zh} -} - -@Article{liu2006first, - title = {First Report of Aphantoxins in {China}-waterblooms of Toxigenic {{\textit{Aphanizomenon~flos-aquae}}} in {Lake Dianchi}}, - author = {Liu, Yongmei and Chen, Wei and Li, Dunhai and Shen, Yinwu and Li, Genbao and Liu, Yongding}, - year = 2006, - journal = {Ecotoxicology and Environmental Safety}, - publisher = {Elsevier}, - volume = 65, - pages = {84--92}, - number = 1 -} - -@PhDThesis{liu2009dian, - title = {滇池、洱海超微浮游蓝藻、绿藻细胞学和多样性研究}, - author = {李艳晖 and 刘永定}, - school = {中国科学院研究生院}, - year = 2009 -} - -@PhDThesis{liu2011chan, - title = {产毒水华束丝藻的生理学特性及毒理学研究}, - author = {刘永梅 and 刘永定}, - school = {中国科学院研究生院}, - year = 2006 -} - -@Article{liu2011effects, - title = {The Effects of Temperature and Nutrient Ratios on {{\textit{Microcystis}}} Blooms in {Lake Taihu}, {China}: An 11-year Investigation}, - author = {Xia Liu and Xiaohua Lu and Yuwei Chen}, - year = 2011, - journal = {Harmful Algae}, - volume = 10, - pages = {337--343}, - url = {http://www.sciencedirect.com/science/article/pii/s1568988310001393}, - number = 3, - doi = {10.1016/j.hal.2010.12.002} -} - -@Article{liu2012bactquant, - title = {Bactquant: An Enhanced Broad-coverage Bacterial Quantitative {Real-time PCR} Assay}, - author = {Liu, Cindy M and Aziz, Maliha and Kachur, Sergey M and Hsueh, Poren and Huang, Yutsung and Keim, Paul and Price, Lance B}, - year = 2012, - journal = {Bmc Microbiology}, - volume = 12, - pages = 56 -} - -@Article{liu2012effects, - title = {Effects of Vertical Mixing on Phytoplankton Blooms in Xiangxi Bay of Three Gorges Reservoir: Implications for Management}, - author = {Liu Liu and Defu Liu and David M. Johnson and Zhongqiang Yi and Yuling Huang}, - year = 2012, - journal = {Water Research}, - volume = 46, - pages = {2121--2130}, - url = {http://www.sciencedirect.com/science/article/pii/s0043135412000498}, - number = 7, - doi = {10.1016/j.watres.2012.01.029} -} - -@Article{liu2014quantitative, - title = {Quantitative Evaluation of Lake Eutrophication Responses Under Alternative Water Diversion Scenarios: A Water Quality Modeling Based Statistical Analysis Approach}, - author = {Yong Liu and Yilin Wang and Hu Sheng and Feifei Dong and Rui Zou and Lei Zhao and Huaicheng Guo and Xiang Zhu and Bin He}, - year = 2014, - journal = {Science of the Total Environment}, - volume = {468–469}, - pages = {219--227}, - url = {http://www.sciencedirect.com/science/article/pii/s0048969713009686}, - number = 0, - doi = {10.1016/j.scitotenv.2013.08.054} -} - -@Article{liu201516s, - title = {{16s Rrna基因在微生物生态学中的应用}}, - author = {刘驰 and 李家宝 and 芮俊鹏 and 安家兴 and 李香真}, - year = 2015, - journal = {生态学报}, - pages = {2769--2788}, - urlaccessdate = {2016-02-24}, - number = 09, - language = {Zh} -} - -@Article{liu2015biogeography, - title = {The Biogeography of Abundant and Rare Bacterioplankton in the Lakes and Reservoirs of {China}}, - author = {Liu, Lemian and Yang, Jun and Yu, Zheng and Wilkinson, David M.}, - year = 2015, - journal = {The Isme Journal}, - publisher = {International Society for Microbial Ecology}, - volume = 9, - pages = {2068--2077}, - url = {http://dx.doi.org/10.1038/ismej.2015.29}, - number = 9, - note = {Original Article}, - doi = {10.1038/ismej.2015.29} -} - -@Article{liu2016chang, - title = {长孢藻（dolichospermum）丝体长度与丰度的变化关系及其水华指示作用}, - author = {刘金福 and 胡韧 and 段雪珂 and 肖利娟}, - year = 2016, - month = 6, - journal = {生态环境学报}, - volume = 25, - pages = {496--502}, - number = 3 -} - -@Article{liu2016distribution, - title = {Distribution and Diversity of Cyanobacteria and Eukaryotic Algae in Qinghai-tibetan Lakes}, - author = {Xiaolei Liu and Weiguo Hou and Hailiang Dong and Shang Wang and Hongchen Jiang and Geng Wu and Jian Yang and Gaoyuan Li}, - year = 2016, - journal = {Geomicrobiology Journal}, - volume = 0, - pages = {00--00}, - url = {http://dx.doi.org/10.1080/01490451.2015.1120368}, - number = {Ja}, - doi = {10.1080/01490451.2015.1120368}, - eprint = {http://dx.doi.org/10.1080/01490451.2015.1120368} -} - -@Article{liu2016phosphorus, - title = {Phosphorus Released From Sediment of {Dianchi Lake} and Its Effect on Growth of {{\textit{Microcystis aeruginosa}}}}, - author = {Liu, Junzhuo and Luo, Xiongxin and Zhang, Naiming and Wu, Yonghong}, - year = 2016, - journal = {Environmental Science and Pollution Research}, - volume = 23, - pages = {16321--16328}, - url = {http://dx.doi.org/10.1007/s11356-016-6816-9}, - number = 16, - doi = {10.1007/s11356-016-6816-9} -} - -@PhDThesis{liu2018zhong, - title = {中国卵囊藻科的分类学及系统发育学研究}, - author = {刘旭东 and 胡征宇}, - school = {中国科学院大学}, - year = 2018 -} - -@Article{liu2019production, - title = {Production and Fate of Fishy Odorants Produced by Two Freshwater Chrysophyte Species Under Different Temperature and Light Conditions}, - author = {Tingting Liu and Jianwei Yu and Ming Su and Zeyu Jia and Chunmiao Wang and Ye Zhang and Chunhua Dou and Michael Burch and Min Yang}, - year = 2019, - journal = {Water Research}, - volume = 157, - pages = {529--534}, - url = {http://www.sciencedirect.com/science/article/pii/s0043135419303082}, - doi = {10.1016/j.watres.2019.04.004}, - other = {author3} -} - -@Article{llewellyn2001radioreceptor, - title = {Radioreceptor Assays for Sensitive Detection and Quantitation of Saxitoxin and Its Analogues From Strains of the Freshwater Cyanobacterium, {{\textit{Anabaena Circinalis}}}}, - author = {Llewellyn, L. E. and Negri, A. P. and Doyle, J. and Baker, P. D. and Beltran, E. C. and Neilan, B. A.}, - year = 2001, - journal = {Environmental Science \& Technology}, - volume = 35, - pages = {1445--1451}, - url = {http://pubs.acs.org/doi/abs/10.1021/es001575z}, - number = 7, - doi = {10.1021/es001575z}, - eprint = {http://pubs.acs.org/doi/pdf/10.1021/es001575z} -} - -@Article{llope2009effects, - title = {Effects of Environmental Conditions on the Seasonal Distribution of Phytoplankton Biomass in the North Sea}, - author = {Llope, M. and Chan, K.-s. and Ciannelli, L. and Reid, P. C. and Stige, L. C. and Stenseth, N. C.}, - year = 2009, - journal = {Limnology and Oceanography}, - volume = 54, - pages = {512--524}, - url = {http://dx.doi.org/10.4319/lo.2009.54.2.0512}, - number = 2, - doi = {10.4319/lo.2009.54.2.0512} -} - -@Article{lloyd1968odorous, - title = {Odorous Compounds in Natural Waters. An Earthy-smelling Compound Associated With Blue-green Algae and Actinomycetes}, - author = {Lloyd L. Medsker and David Jenkins and Jerome F. Thomas}, - year = 1968, - journal = {Environmental Science \& Technology}, - volume = 2, - pages = {461--464}, - url = {http://dx.doi.org/10.1021/es60018a005}, - number = 6, - doi = {10.1021/es60018a005}, - eprint = {http://dx.doi.org/10.1021/es60018a005} -} - -@Article{lloyd1998rapid, - title = {Rapid Analysis of Geosmin and 2-methylisoborneol in Water Using Solid Phase Micro Extraction Procedures}, - author = {Steven W Lloyd and Jeanne M Lea and Paul V Zimba and Casey C Grimm}, - year = 1998, - journal = {Water Research}, - volume = 32, - pages = {2140--2146}, - url = {http://www.sciencedirect.com/science/article/pii/s0043135497004442}, - number = 7, - doi = {10.1016/s0043-1354(97)00444-2} -} - -@Article{lodge2012global, - title = {Global Introductions of Crayfishes: Evaluating the Impact of Species Invasions on Ecosystem Services}, - author = {Lodge, David M. and Deines, Andrew and Gherardi, Francesca and Yeo, Darren C.j. and Arcella, Tracy and Baldridge, Ashley K. and Barnes, Matthew A. and Chadderton, W. Lindsay and Feder, Jeffrey L. and Gantz, Crysta A. and Howard, Geoffrey W. and Jerde, Christopher L. and Peters, Brett W. and Peters, Jody A. and Sargent, Lindsey W. and Turner, Cameron R. and Wittmann, Marion E. and Zeng, Yiwen}, - year = 2012, - journal = {Annual Review of Ecology, Evolution, and Systematics}, - volume = 43, - pages = {449--472}, - url = {http://dx.doi.org/10.1146/annurev-ecolsys-111511-103919}, - number = 1, - doi = {10.1146/annurev-ecolsys-111511-103919} -} - -@Article{londe2016water, - title = {{water Residence Time Affecting Phytoplankton Blooms: Study Case in Ibitinga Reservoir (s\~a\poundso Paulo, Brazil) Using Landsat/tm Images}}, - author = {Londe, L. R. and Novo, E. M. L. M. and Barbosa, C. and Araujo, C. A. S.}, - year = 2016, - month = 09, - journal = {{brazilian Journal of Biology}}, - publisher = {Scielo}, - volume = 76, - pages = {664--672}, - url = {{http://www.scielo.br/scielo.php?script = sci_arttext&pid = s1519-69842016000300664&nrm = iso}}, - doi = {10.1590/1519-6984.23814} -} - -@Article{lopes2005short, - title = {Short Term Spatial and Temporal Variation of Phytoplankton in A Shallow Tropical Oligotrophic Reservoir, Southeast {Brazil}}, - author = {Lopes, Maria Ros\^{e}lia Marques and Bicudo, Carlose De M. and Ferragut, M. Carla}, - year = 2005, - journal = {Hydrobiologia}, - volume = 542, - pages = {235--247}, - url = {http://dx.doi.org/10.1007/s10750-004-8332-z}, - number = 1, - doi = {10.1007/s10750-004-8332-z} -} - -@Article{louis1979growth, - title = {Growth Kinetics of {{\textit{Oscillatoria agardhii}}} Gomont in Continuous Culture, Limited in Its Growth by the Light Energy Supply}, - author = {Van Liere, Louis and Mur, Luuc R.}, - year = 1979, - journal = {Journal of General Microbiology}, - volume = 115, - pages = {153--160}, - url = {http://mic.sgmjournals.org/content/115/1/153.abstract}, - number = 1, - doi = {10.1099/00221287-115-1-153}, - eprint = {http://mic.sgmjournals.org/content/115/1/153.full.pdf+html} -} - -@Article{lovstad1984growth, - title = {Growth Limiting Factors for {{\textit{Oscillatoria agardhii}}} and Diatoms in Eutrophic Lakes}, - author = {øivind Løvstad}, - year = 1984, - journal = {Oikos}, - publisher = {[nordic Society Oikos, Wiley]}, - volume = 42, - pages = {185--192}, - url = {http://www.jstor.org/stable/3544792}, - number = 2 -} - -@Article{lowe1996periphyton, - title = {Periphyton Patterns in Lakes}, - author = {Lowe, Rl}, - year = 1996, - journal = {Algal Ecology: Freshwater Benthic Ecosystems}, - publisher = {Academic Press, San Diego}, - pages = {57--76} -} - -@Article{lu2000han, - title = {汉江下游突发``水华''的调查研究}, - author = {卢大远 and 刘培刚 and 范天愈}, - year = 2000, - journal = {环境科学研究}, - volume = 13, - pages = {28--31}, - number = 2, - language = {Zh} -} - -@Report{lu2010qing, - title = {青草沙水库水质变化及藻类演替规律初步研究}, - author = {卢宁}, - year = 2010, - publisher = {联合培养博士后工作报告}, - type = {Post Doctoral thesis}, - institution = {InCollection}, - volume = 1, - language = {Zh} -} - -@Article{ludwig2007identification, - title = {Identification and Expression Analyses of Putative Sesquiterpene Synthase Genes in {{\textit{Phormidium}}} sp. and Prevalence of {{\textit{Geoa}}}-like Genes in A Drinking Water Reservoir}, - author = {Ludwig, Frank and Medger, Anja and B{\"o}rnick, Hilmar and Opitz, Michael and Lang, Kathrin and G{\"o}ttfert, Michael and R{\"o}ske, Isolde}, - year = 2007, - journal = {Applied and Environmental Microbiology}, - volume = 73, - pages = {6988--6993}, - url = {http://aem.asm.org/content/73/21/6988.abstract}, - number = 21, - doi = {10.1128/aem.01197-07} -} - -@Article{lund1965ecology, - title = {The Ecology of the Freshwater Phytoplankton}, - author = {Lund, J. W. G.}, - year = 1965, - journal = {Biological Reviews}, - volume = 40, - pages = {231--290}, - number = 2 -} - -@Article{luo2019cheng, - title = {城镇供水水质投诉原因分析及处理对策}, - author = {罗, 思胜 and 钟, 永光 and 陈, 志浩 and 黄, 健嫦}, - year = 2019, - journal = {城镇供水}, - pages = {84--87}, - number = 04 -} - -@Article{lv2000yong, - title = {用硫酸铜及改变水的 Ph 值去除水中藻类}, - author = {吕启忠 and 张可欣 and 牛玉香}, - year = 2000, - journal = {中国给水排水}, - volume = 16, - pages = {49--50}, - number = 5, - language = {Zh} -} - -@Article{lv2014temperature, - title = {Temperature and Nutrients Are Significant Drivers of Seasonal Shift in Phytoplankton Community From A Drinking Water Reservoir, Subtropical {China}}, - author = {Lv, Hong and Yang, Jun and Liu, Lemian and Yu, Xiaoqing and Yu, Zheng and Chiang, Penchi}, - year = 2014, - journal = {Environmental Science and Pollution Research}, - publisher = {Springer Berlin Heidelberg}, - volume = 21, - pages = {5917--5928}, - url = {http://dx.doi.org/10.1007/s11356-014-2534-3}, - number = 9, - doi = {10.1007/s11356-014-2534-3}, - language = {English} -} - -@Article{lylloff2012detection, - title = {{detection of Aquatic Streptomycetes by Quantitative PCR for Prediction of Taste-and-odour Episodes in Water Reservoirs}}, - author = {Lylloff, Jeanette E. and Mogensen, Maria Hummelshoj and Burford, Michele A. and Schluter, Louise and Jorgensen, Niels O. G.}, - year = 2012, - journal = {Journal of Water Supply Research and Technology-aqua}, - publisher = {Iwa Publishing}, - volume = 61, - pages = {272--282}, - language = {English}, - number = 5 -} - -@Article{ma2010impact, - title = {Impact of Climate Variability and Human Activity on Streamflow Decrease in the {Miyun Reservoir} Catchment}, - author = {Huan Ma and Dawen Yang and Soon Keat Tan and Bing Gao and Qingfang Hu}, - year = 2010, - journal = {Journal of Hydrology}, - volume = 389, - pages = {317--324}, - url = {http://www.sciencedirect.com/science/article/pii/s0022169410003458}, - number = {3-4}, - doi = {10.1016/j.jhydrol.2010.06.010} -} - -@Article{mackintosh1990cyanobacterial, - title = {Cyanobacterial Microcystin-{lr} Is A Potent and Specific Inhibitor of Protein Phosphatases 1 and 2a From Both Mammals and Higher Plants}, - author = {Carol Mackintosh and Kenneth A. Beattie and Susanne Klumpp and Philip Cohen and Geoffrey A. Codd}, - year = 1990, - journal = {Febs Letters}, - volume = 264, - pages = {187--192}, - url = {http://www.sciencedirect.com/science/article/pii/001457939080245e}, - number = 2, - doi = {10.1016/0014-5793(90)80245-e} -} - -@Article{maeda1973high, - title = {On the High Density of A Phytoplankton Population Found in A Lake Under Ice}, - author = {Maeda, Osamu and Ichimura, Shun-ei}, - year = 1973, - journal = {Internationale Revue Der Gesamten Hydrobiologie Und Hydrographie}, - volume = 58, - pages = {673--689}, - number = 5 -} - -@Article{mahattanatawee2007comparison, - title = {Comparison of Three Lychee Cultivar Odor Profiles Using Gas Chromatography−olfactometry and Gas Chromatography−sulfur Detection}, - author = {Kanjana Mahattanatawee and Pilar Ruiz Perez-cacho and And Thomas Davenport and Russell Rouseff}, - year = 2007, - journal = {Journal of Agricultural and Food Chemistry}, - volume = 55, - pages = {1939--1944}, - url = {http://dx.doi.org/10.1021/jf062925p}, - number = 5, - doi = {10.1021/jf062925p}, - note = {Pmid: 17266328}, - eprint = {http://dx.doi.org/10.1021/jf062925p} -} - -@Article{maileht2012water, - title = {Water Colour, Phosphorus and Alkalinity Are the Major Determinants of the Dominant Phytoplankton Species in European Lakes}, - author = {Maileht, Kairi and N?ges, Tiina and N?ges, Peeter and Ott, Ingmar and Mischke, Ute and Carvalho, Laurence and Dudley, Bernard}, - year = 2012, - journal = {Hydrobiologia}, - publisher = {Springer Netherlands}, - pages = {1--12}, - url = {http://dx.doi.org/10.1007/s10750-012-1348-x}, - language = {English}, - doi = {10.1007/s10750-012-1348-x} -} - -@Article{majsterek2004toxicity, - title = {Toxicity of Microcystin From Cyanobacteria Growing in A Source of Drinking Water}, - author = {Ireneusz Majsterek and Paulina Sicinska and Ma{\l}gorzata Tarczynska and Maciej Zalewski and Zofia Walter}, - year = 2004, - journal = {Comparative Biochemistry and Physiology Part C: Toxicology \& Pharmacology}, - volume = 139, - pages = {175--179}, - url = {http://www.sciencedirect.com/science/article/pii/s1532045604002030}, - number = {1--3}, - doi = {10.1016/j.cca.2004.10.007} -} - -@Misc{mallevialle1987identification, - title = {Identification and Treatment of Tastes and Odors in Drinking Water}, - author = {Mallevialle J and Suffet Ih}, - year = 1987, - publisher = {Awwa Research Foundation and Lyonnaise Des Eaux Cooperative Research Report, American Water Works Assoc} -} - -@Article{malve2006estimating, - title = {Estimating Nutrients and Chlorophyll A Relationships in Finnish Lakes}, - author = {Malve, Olli and Qian, Song S.}, - year = 2006, - journal = {Environmental Science \& Technology}, - volume = 40, - pages = {7848--7853}, - url = {http://dx.doi.org/10.1021/es061359b}, - number = 24, - doi = {10.1021/es061359b}, - note = {Pmid: 17256537}, - eprint = {http://dx.doi.org/10.1021/es061359b} -} - -@Article{marbun2012rapid, - title = {Rapid On-site Monitoring of Cylindrospermopsin-producers in Reservoirs Using Quantitative PCR}, - author = {Yovita Ramos Marbun and Hung-kai Yen and Tsair-fuh Lin and Hsiu-lian Lin and Atsuko Michinaka}, - year = 2012, - journal = {Sustainable Environment Research}, - volume = 22, - pages = {143--151}, - number = 3 -} - -@Article{margalef1978life, - title = {Life-forms of Phytoplankton As Survival Alternatives in An Unstable Environment}, - author = {Margalef, Ram{\'o}n}, - year = 1978, - journal = {Oceanologica Acta}, - publisher = {Gauthier-villars}, - volume = 1, - pages = {493--509}, - number = 4 -} - -@Article{marra2011practical, - title = {Practical Variable Selection for Generalized Additive Models}, - author = {Giampiero Marra and Simon N. Wood}, - year = 2011, - journal = {Computational Statistics \& Data Analysis}, - volume = 55, - pages = {2372--2387}, - url = {http://www.sciencedirect.com/science/article/pii/s0167947311000491}, - number = 7, - doi = {10.1016/j.csda.2011.02.004} -} - -@Article{martin1988methylisoborneol, - title = {2-methylisoborneol Implicated As A Cause of Off-flavour in Channel Catfish, Ictalums Punctatus (rafinesque), From Commercial Culture Ponds in Mississippi}, - author = {Martin, J. F. and Mccoy, C. P. and Tucker, C. S. and Bennett, L. W.}, - year = 1988, - journal = {Aquaculture Research}, - volume = 19, - pages = {151--157}, - url = {https://onlinelibrary.wiley.com/doi/abs/10.1111/j.1365-2109.1988.tb00418.x}, - number = 2, - doi = {10.1111/j.1365-2109.1988.tb00418.x}, - eprint = {https://onlinelibrary.wiley.com/doi/pdf/10.1111/j.1365-2109.1988.tb00418.x} -} - -@Article{martin1991planktonic, - title = {A Planktonic {{\textit{Oscillatoria}}} Species From {Mississippi Catfish P}onds That Produces the Off-flavor Compound 2-methylisoborneol}, - author = {John F Martin and George Izaguirre and Paul Waterstrat}, - year = 1991, - journal = {Water Research}, - volume = 25, - pages = {1447--1451}, - url = {http://www.sciencedirect.com/science/article/pii/004313549190173n}, - number = 12, - doi = {10.1016/0043-1354(91)90173-n} -} - -@Article{martinse2018cell, - title = {Cell Size Control Driven by the Circadian Clock and Environment in Cyanobacteria}, - author = {Martins, Bruno M. C. and Tooke, Amy K. and Thomas, Philipp and Locke, James C. W.}, - year = 2018, - journal = {Proceedings of the National Academy of Sciences}, - publisher = {National Academy of Sciences}, - volume = 115, - pages = {E11415--e11424}, - url = {https://www.pnas.org/content/115/48/e11415}, - number = 48, - doi = {10.1073/pnas.1811309115} -} - -@Article{matsumoto1988earthy, - title = {Earthy-musty Odor-producing Cyanophytes Isolated From Five Water Areas in Tokyo}, - author = {Matsumoto, A and Tsuchiya, Y}, - year = 1988, - journal = {Water Science \& Technology}, - volume = 20, - pages = {179--183}, - number = {8-9} -} - -@Article{matsunaga200116s, - title = {16s Rrna-targeted Identification of Cyanobacterial Genera Using Oligonucleotide-probes Immobilized on Bacterial Magnetic Particles}, - author = {Matsunaga, Tadashi and Takeyama, Haruko and Nakayama, Hideki}, - year = 2001, - journal = {Journal of Applied Phycology}, - publisher = {Kluwer Academic Publishers}, - volume = 13, - pages = {389--394}, - url = {http://dx.doi.org/10.1023/a\%3a1017990518648}, - language = {English}, - doi = {10.1023/a:1017990518648} -} - -@Article{matthiensen2000microcystinlr, - title = {Microcystin-{LR}, From the Cyanobacterium {\it Microcystis} Rst 9501 and From A {\it Microcystis} Bloom in the {Patos Lagoon Estuary, Brazil}}, - author = {Matthiensen, A. and Beattie, K.a. and Yunes, J.s. and Kaya, K. and Codd, G.a.}, - year = 2000, - journal = {Phytochemistry}, - publisher = {Elsevier}, - volume = 55, - pages = {383--387}, - number = 5 -} - -@Article{matthijs1996application, - title = {Application of Light-emitting Diodes in Bioreactors: Flashing Light Effects and Energy Economy in Algal Culture ({\textit{Chlorella Pyrenoidosa}})}, - author = {Matthijs, Hans Cp and Balke, Hans and Van Hes, Udo M and Kroon, Bernd and Mur, Luuc R and Binot, Roger A}, - year = 1996, - journal = {Biotechnology and Bioengineering}, - publisher = {Wiley Online Library}, - volume = 50, - pages = {98--107}, - number = 1 -} - -@Article{matthijs2012selective, - title = {Selective Suppression of Harmful Cyanobacteria in An Entire Lake With Hydrogen Peroxide}, - author = {Hans C.p. Matthijs and Petra M. Visser and Bart Reeze and Jeroen Meeuse and Pieter C. Slot and Geert Wijn and Ren{\'e}e Talens and Jef Huisman}, - year = 2012, - journal = {Water Research}, - volume = 46, - pages = {1460--1472}, - url = {http://www.sciencedirect.com/science/article/pii/s0043135411006889}, - number = 5, - note = {Cyanobacteria: Impacts of Climate Change on Occurrence, Toxicity and Water Quality Management}, - doi = {10.1016/j.watres.2011.11.016} -} - -@Article{mcardle2001fitting, - title = {Fitting Multivariate Models to Community Data: A Comment on Distance-based Redundancy Analysis}, - author = {Mcardle, Brian H. and Anderson, Marti J.}, - year = 2001, - month = {Jan}, - journal = {Ecology}, - publisher = {Ecological Society of America}, - volume = 82, - pages = {290--297}, - url = {http://dx.doi.org/10.1890/0012-9658(2001)082[0290:fmmtcd]2.0.co;2}, - number = 1, - doi = {10.1890/0012-9658(2001)082[0290:fmmtcd]2.0.co;2} -} - -@article{mcdowall2007removal, - author = {McDowall, Bridget and Ho, Lionel and Saint, Christopher and Newcombe, Gayle}, - title = {Removal of geosmin and 2-methylisoborneol through biologically active sand filters}, - journal = {International Journal of Environment and Waste Management}, - volume = {1}, - number = {4}, - pages = {311-320}, - year = {2007}, - doi = {10.1504/IJEWM.2007.015685}, - URL = {https://www.inderscienceonline.com/doi/abs/10.1504/IJEWM.2007.015685}, - eprint = {https://www.inderscienceonline.com/doi/pdf/10.1504/IJEWM.2007.015685} -} - - -@InCollection{mcgowan2016chapter, - title = {Chapter 2 - Algal Blooms}, - author = {Suzanne Mcgowan}, - year = 2016, - booktitle = {Biological and Environmental Hazards, Risks, and Disasters}, - publisher = {Academic Press}, - pages = {5--43}, - url = {http://www.sciencedirect.com/science/article/pii/b9780123948472000024}, - address = {Boston}, - isbn = {978-0-12-394847-2}, - doi = {10.1016/b978-0-12-394847-2.00002-4} -} - -@Article{mcguire1995offflavor, - title = {Off-flavor As the Consumer's Measure of Drinking Water Safety}, - author = {Michael J. Mcguire}, - year = 1995, - journal = {Water Science and Technology}, - volume = 31, - pages = {1--8}, - url = {http://www.sciencedirect.com/science/article/pii/027312239500448v}, - number = 11, - note = {Off-flavours in the Aquatic Environment 1994}, - doi = {10.1016/0273-1223(95)00448-v} -} - -@Article{mcintire1966some, - title = {Some Effects of Current Velocity on Periphyton Communities in Laboratory Streams}, - author = {Mcintire, C. David}, - year = 1966, - journal = {Hydrobiologia}, - volume = 27, - pages = {559--570}, - url = {http://dx.doi.org/10.1007/bf00042713}, - number = 3, - doi = {10.1007/bf00042713} -} - -@Article{mckane2002resource, - title = {Resource-based Niches Provide A Basis for Plant Species Diversity and Dominance in Arctic Tundra}, - author = {Mckane, Robert B. and Johnson, Loretta C. and Shaver, Gaius R. and Nadelhoffer, Knute J. and Rastetter, Edward B. and Fry, Brian and Giblin, Anne E. and Kielland, Knut and Kwiatkowski, Bonnie L. and Laundre, James A. and Murray, Georgia}, - year = 2002, - month = {Jan}, - journal = {Nature}, - volume = 415, - pages = {68--71}, - url = {http://dx.doi.org/10.1038/415068a}, - number = 6867, - doi = {10.1038/415068a} -} - -@Article{mcknight1983cuso4, - title = {Cuso4 Treatment of Nuisance Algal Blooms in Drinking Water Reservoirs}, - author = {Mcknight, Dianem. and Chisholm, Salliew. and Harleman, Donaldr.f.}, - year = 1983, - journal = {Environmental Management}, - publisher = {Springer-verlag}, - volume = 7, - pages = {311--320}, - url = {http://dx.doi.org/10.1007/bf01866913}, - number = 4, - doi = {10.1007/bf01866913}, - language = {English} -} - -@Article{mcnaughton1970dominance, - title = {Dominance and the Niche in Ecological Systems}, - author = {Mcnaughton, S. J. and Wolf, L. L.}, - year = 1970, - journal = {Science}, - volume = 167, - pages = {131--139}, - url = {http://www.sciencemag.org/content/167/3915/131.short}, - number = 3915, - doi = {10.1126/science.167.3915.131} -} - -@Article{mcqueen1987influence, - title = {Influence of Water Temperature and Nitrogen to Phosphorus Ratios on the Dominance of Blue-green Algae in {Lake St. George}, {Ontario}}, - author = {Mcqueen, D. J. and Lean, D. R. S.}, - year = 1987, - journal = {Canadian Journal of Fisheries and Aquatic Sciences}, - volume = 44, - pages = {598--604}, - url = {http://www.nrcresearchpress.com/doi/abs/10.1139/f87-073}, - number = 3, - doi = {10.1139/f87-073}, - eprint = {http://www.nrcresearchpress.com/doi/pdf/10.1139/f87-073} -} - -@Article{meinesz2001introduced, - title = {The Introduced Green Alga Caulerpa Taxifolia Continues to Spread in the Mediterranean}, - author = {Meinesz, Alexandre and Belsher, Thomas and Thibaut, Thierry and Antolic, Boris and Mustapha, Karimben and Boudouresque, Charles-francçois and Chiaverini, Danièle and Cinelli, Francesco and Cottalorda, Jean-michel and Djellouli, Aslam and El Abed, Amor and Orestano, Carla and Grau, Antonim. and Ivesa, Ljiljana and Jaklin, Andrej and Langar, Habib and Massuti-pascual, Enric and Peirano, Andrea and Tunesi, Leonardo and De Vaugelas, Jean and Zavodnik, Nevenka and Zuljevic}, - year = 2001, - journal = {Biological Invasions}, - publisher = {Kluwer Academic Publishers}, - volume = 3, - pages = {201--210}, - url = {http://dx.doi.org/10.1023/a%3a1014549500678}, - number = 2, - doi = {10.1023/a:1014549500678}, - language = {English} -} - -@Article{meissner2013microcystin, - title = {Microcystin Production Revisited: Conjugate Formation Makes A Major Contribution}, - author = {Meissner, Sven and Fastner, Jutta and Dittmann, Elke}, - year = 2013, - journal = {Environmental Microbiology}, - pages = {1--11}, - url = {http://dx.doi.org/10.1111/1462-2920.12072}, - doi = {10.1111/1462-2920.12072} -} - -@Article{mejean2010genome, - title = {The Genome Sequence of the Cyanobacterium {{\textit{Scillatoria}}} sp.~pcc 6506 Reveals Several Gene Clusters Responsible for the Biosynthesis of Toxins and Secondary Metabolites}, - author = {M{\'e}jean, Annick and Mazmouz, Rabia and Mann, St{\'e}phane and Calteau, Alexandra and M{\'e}digue, Claudine and Ploux, Olivier}, - year = 2010, - journal = {Journal of Bacteriology}, - volume = 192, - pages = {5264--5265}, - url = {http://jb.asm.org/content/192/19/5264.abstract}, - number = 19, - doi = {10.1128/jb.00704-10} -} - -@InCollection{melack1981photosynthetic, - title = {Photosynthetic Activity of Phytoplankton in Tropical African Soda Lakes}, - author = {Melack, Johnm.}, - year = 1981, - booktitle = {Salt Lakes}, - publisher = {Springer Netherlands}, - volume = 5, - pages = {71--85}, - language = {English}, - isbn = {978-94-009-8667-1}, - doi = {10.1007/978-94-009-8665-7_7} -} - -@Article{mellard2011vertical, - title = {The Vertical Distribution of Phytoplankton in Stratified Water Columns}, - author = {Jarad P. Mellard and Kohei Yoshiyama and Elena Litchman and Christopher A. Klausmeier}, - year = 2011, - journal = {Journal of Theoretical Biology}, - volume = 269, - pages = {16--30}, - url = {http://www.sciencedirect.com/science/article/pii/s0022519310005242}, - number = 1, - doi = {10.1016/j.jtbi.2010.09.041} -} - -@Article{melo2020geosmin, - title = {Geosmin Attracts Aedes Aegypti Mosquitoes to Oviposition Sites}, - author = {Nadia Melo and Gabriella H. Wolff and Andre Luis Costa-da-silva and Robert Arribas and Merybeth Fernandez Triana and Muriel Gugger and Jeffrey A. Riffell and Matthew Degennaro and Marcus C. Stensmyr}, - year = 2020, - volume = 2020, - pages = {127--134}, - url = {https://www.cell.com/action/showpdf?pii = s0960-9822%2819%2931441-1}, - journaltitle = {Current Biology}, - number = 20 -} - -@Article{meng2007wo, - title = {我国主要水库富营养化现状评价}, - author = {孟红明 and 张振克}, - year = 2007, - journal = {河南师范大学学报}, - volume = 35, - pages = {133--136}, - number = 2, - language = {Zh} -} - -@Article{mez1998environmental, - title = {Environmental Conditions in High Mountain Lakes Containing Toxic Benthic Cyanobacteria}, - author = {Mez, Konstanze and Hanselmann, Kurt and Preisig, Hansrudolf}, - year = 1998, - journal = {Hydrobiologia}, - publisher = {Kluwer Academic Publishers}, - volume = 368, - pages = {1--15}, - url = {http://dx.doi.org/10.1023/a%3a1003224032079}, - number = {1-3}, - doi = {10.1023/a:1003224032079}, - language = {English} -} - -@Article{micheletti1998daily, - title = {The Daily Integral of Photosynthesis by {{\textit{Planktothrix rubescens}}} During Summer Stratification and Autumnal Mixing in {Lake Zürich}}, - author = {Micheletti, Silvia and Schanz, Ferdinand and Walsby, Anthony E.}, - year = 1998, - journal = {New Phytologist}, - publisher = {Cambridge University Press}, - volume = 139, - pages = {233--246}, - url = {http://dx.doi.org/10.1046/j.1469-8137.1998.00196.x}, - number = 2, - doi = {10.1046/j.1469-8137.1998.00196.x} -} - -@Article{michinaka2012rapid, - title = {Rapid On-site Multiplex Assays for Total and Toxigenic {{\textit{Microcystis}}} Using {Real-Time PCR} With Microwave Cell Disruption}, - author = {Michinaka, A and Yen, Hk and Chiu, Yt and Tsao, Hw and Lin, Tf}, - year = 2012, - journal = {Water Science \& Technology}, - publisher = {Iwa Publishing}, - volume = 66, - pages = {1247--1252}, - number = 6 -} - -@Article{middleton1956drinking, - title = {Drinking Water Taste and Odor-correlation With Organic Chemical Content}, - author = {Middleton, Fm and Grant, Wallace and Rosen, Aa}, - year = 1956, - journal = {Industrial \& Engineering Chemistry}, - publisher = {Acs Publications}, - volume = 48, - pages = {268--274}, - number = 2 -} - -@Article{milovanovic2015determination, - title = {Determination of Volatile Organic Compounds in Selected Strains of Cyanobacteria}, - author = {Milovanovi{\'c}, Ivan and Mišan, Aleksandra and Simeunovi{\'c}, Jelica and Kova{\v{c}}, Dajana and Jambrec, Dubravka and Mandi{\'c}, Anamarija}, - year = 2015, - journal = {Journal of Chemistry}, - publisher = {Hindawi}, - volume = 2015, - url = {https://www.hindawi.com/journals/jchem/2015/969542/} -} - -@Article{mitrovic2003critical, - title = {Critical Flow Velocities for the Growth and Dominance of {{\textit{Anabaena circinalis}}} in Some Turbid Freshwater Rivers}, - author = {Mitrovic, S. M. and Oliver, R. L. and Rees, C. and Bowling, L. C. and Buckney, R. T.}, - year = 2003, - journal = {Freshwater Biology}, - publisher = {Blackwell Science Ltd}, - volume = 48, - pages = {164--174}, - url = {http://dx.doi.org/10.1046/j.1365-2427.2003.00957.x}, - number = 1, - doi = {10.1046/j.1365-2427.2003.00957.x} -} - -@Article{miwa1988effect, - title = {{effect of Chelating Agents on the Growth of Blue-green Algae and the Release of Geosmin}}, - author = {Miwa, M. and Morizane, K.}, - year = 1988, - month = 08, - journal = {Water Science and Technology}, - volume = 20, - pages = {197--203}, - url = {https://doi.org/10.2166/wst.1988.0243}, - number = {8-9}, - doi = {10.2166/wst.1988.0243} -} - -@Article{molica2005occurrence, - title = {Occurrence of Saxitoxins and An Anatoxin-a(s)-like Anticholinesterase in A Brazilian Drinking Water Supply}, - author = {Renato J.r. Molica and Eduardo J.a. Oliveira and Paulo V.v.c. Carvalho and Anapaula N.s.f. Costa and Maristela C.c. Cunha and Gustavo L. Melo and Sandra M.f.o. Azevedo}, - year = 2005, - journal = {Harmful Algae}, - volume = 4, - pages = {743--753}, - url = {http://www.sciencedirect.com/science/article/pii/s156898830400112x}, - number = 4, - doi = {10.1016/j.hal.2004.11.001} -} - -@Article{montealegre1995dynamic, - title = {A Dynamic Simulation Model for the Blooming of {{\textit{Oscillatoria agardhii}}} in A Monomictic Lake}, - author = {Ricardo Jiménez Montealegre and Johan Verreth and Kees Steenbergen and Jan Moed and Marcel Machiels}, - year = 1995, - journal = {Ecological Modelling}, - volume = 78, - pages = {17--24}, - url = {http://www.sciencedirect.com/science/article/pii/030438009400114w}, - number = {1??}, - note = {mathematical Modelling in Limnology}, - doi = {10.1016/0304-3800(94)00114-w} -} - -@Misc{montiel1991study, - title = {Study Investigating the Origin and Mechanism of Formation of Sapid Components Preceding Musty Taste in Our Water Supply}, - author = {Montiel A.}, - year = 1991, - publisher = {Proceedings Awwa Wat. Qual. Technol. Conf., Orlando, Fl, {USA}} -} - -@TechReport{moore1905copper, - title = {Copper As An {{Algicide}} and {{Disinfectant}} in {{Water Supplies}}}, - author = {Moore, G. T}, - year = 1905, - address = {Washington, DC}, - institution = {{US Government Printing Office}} -} - -@Article{morabito2007seasonal, - title = {Seasonal Morphological Plasticity of Phytoplankton in Lago Maggiore (n. Italy)}, - author = {Morabito, Giuseppe and Oggioni, Alessandro and Caravati, Emanuele and Panzani, Pierisa}, - year = 2007, - journal = {Hydrobiologia}, - publisher = {Kluwer Academic Publishers}, - volume = 578, - pages = {47--57}, - url = {http://dx.doi.org/10.1007/s10750-006-0432-5}, - language = {English}, - number = 1, - doi = {10.1007/s10750-006-0432-5} -} - -@Article{morales2005observations, - title = {Observations of the Morphology of Some Known and New Fragilarioid Diatoms (bacillariophyceae) From Rivers in the {USA}}, - author = {Morales, Eduardo A.}, - year = 2005, - journal = {Phycological Research}, - publisher = {Blackwell Publishing Ltd}, - volume = 53, - pages = {113--133}, - url = {http://dx.doi.org/10.1111/j.1440-183.2005.00378.x}, - number = 2, - doi = {10.1111/j.1440-183.2005.00378.x} -} - -@Article{moran2010increasing, - title = {Increasing Importance of Small Phytoplankton in A Warmer Ocean}, - author = {Mor{\'a}n, Xos{\'e} Anxelu G. and L{\'o}pez-urrutia, {\'a}ngel and Calvo-d{\'i}az, Alejandra and Li, William K. W.}, - year = 2010, - journal = {Global Change Biology}, - publisher = {Blackwell Publishing Ltd}, - volume = 16, - pages = {1137--1144}, - url = {http://dx.doi.org/10.1111/j.1365-2486.2009.01960.x}, - number = 3, - doi = {10.1111/j.1365-2486.2009.01960.x} -} - -@Article{morenoostos2008spatial, - title = {The Spatial Distribution of Different Phytoplankton Functional Groups in A Mediterranean Reservoir}, - author = {Moreno-ostos, Enrique and Cruz-pizarro, Luis and Basanta, Ana and Glen George, D.}, - year = 2008, - journal = {Aquatic Ecology}, - publisher = {Springer Netherlands}, - volume = 42, - pages = {115--128}, - url = {http://dx.doi.org/10.1007/s10452-007-9087-1}, - language = {English}, - doi = {10.1007/s10452-007-9087-1} -} - -@Article{moura2011vertical, - title = {Vertical and Temporal Dynamics of Cyanobacteria in the Carpina Potable Water Reservoir in Northeastern Brazil}, - author = {Moura, An and Dantas, Ew and Oliveira, Hsb and Bittencourt-oliveira, Mc}, - year = 2011, - month = 05, - journal = {Brazilian Journal of Biology}, - publisher = {Scielo}, - volume = 71, - pages = {451--459}, - url = {http://www.scielo.br/scielo.php?script = sci_arttext&pid = s1519-69842011000300015&nrm = iso}, - doi = {10.1590/S1519-69842011000300015}, - language = {En} -} - -@Article{moustafa2009genomic, - title = {Genomic Footprints of A Cryptic Plastid {{\textit{Endosymbiosis}}} in Diatoms}, - author = {Moustafa, Ahmed and Beszteri, B{\'a}nk and Maier, Uwe G. and Bowler, Chris and Valentin, Klaus and Bhattacharya, Debashish}, - year = 2009, - journal = {Science}, - volume = 324, - pages = {1724--1726}, - url = {http://www.sciencemag.org/content/324/5935/1724.abstract}, - number = 5935, - doi = {10.1126/science.1172983} -} - -@Article{moyle1996fish, - title = {Fish Invasions in California: Do Abiotic Factors Determine Success?}, - author = {Moyle, Peter B. and Light, Theo}, - year = 1996, - journal = {Ecology}, - publisher = {Ecological Society of America}, - volume = 77, - pages = {Pp. 1666--1670}, - url = {http://www.jstor.org/stable/2265770}, - number = 6, - language = {English} -} - -@Article{munoz20105monitoring, - title = {Monitoring Techniques for Odour Abatement Assessment}, - author = {Raul Mu{\~n}oz and Eric C. Sivret and Gavin Parcsi and R. Lebrero and Xinguang Wang and I.h. (mel) Suffet and Richard M. Stuetz}, - year = 2010, - journal = {Water Research}, - volume = 44, - pages = {5129--5149}, - url = {http://www.sciencedirect.com/science/article/pii/s0043135410003891}, - number = 18, - doi = {10.1016/j.watres.2010.06.013} -} - -@Article{mur1978competition, - title = {Competition of the Green Alga Scenedesmus and the Blue-green Alga {{\textit{Oscillatoria}}}}, - author = {Luuc R. Mur and Herman J. Gons and Louis Van Liere}, - year = 1978, - journal = {Sil Communications, 1953-1996}, - publisher = {Taylor \& Francis}, - volume = 21, - pages = {473--479}, - url = {https://doi.org/10.1080/05384680.1978.11903986}, - number = 1, - doi = {10.1080/05384680.1978.11903986}, - eprint = {https://doi.org/10.1080/05384680.1978.11903986} -} - -@Article{mur1999cyanobacteria, - title = {Cyanobacteria in the Environment}, - author = {Mur, Luuc R and Skulberg, Olav M and Utkilen, Hans}, - year = 1999, - journal = {Biochimica Et Biophysica Acta} -} - -@Article{murdock2007linking, - title = {Linking Benthic Algal Biomass to Stream Substratum Topography}, - author = {Murdock, Justin N. and Dodds, Walter K.}, - year = 2007, - journal = {Journal of Phycology}, - publisher = {Blackwell Publishing Ltd}, - volume = 43, - pages = {449--460}, - url = {http://dx.doi.org/10.1111/j.1529-8817.2007.00357.x}, - number = 3, - doi = {10.1111/j.1529-8817.2007.00357.x} -} - -@Article{muylaert2000spatial, - title = {Spatial and Temporl Dynamics of Phytoplankton Communities in A Freshwater Tidal Estuary (schelde, Belgium)}, - author = {K. Muylaert and K. Sabbe and W. Vyverman}, - year = 2000, - journal = {Estuarine, Coastal and Shelf Science}, - volume = 50, - pages = {673--687}, - url = {http://www.sciencedirect.com/science/article/pii/s0272771400905900}, - number = 5, - doi = {10.1006/ecss.2000.0590} -} - -@Article{muyzer1993profiling, - title = {Profiling of Complex Microbial Populations by Denaturing Gradient Gel Electrophoresis Analysis of Polymerase Chain Reaction-amplified Genes Coding for {16s Rrna}}, - author = {Muyzer, G and De Waal, E C and Uitterlinden, A G}, - year = 1993, - journal = {Applied and Environmental Microbiology}, - volume = 59, - pages = {695--700}, - url = {http://aem.asm.org/content/59/3/695.abstract}, - number = 3 -} - -@Article{naes1988factors, - title = {Factors Influencing Geosmin Production by the Cyanobacterium {{\textit{Oscillatoria Brevis}}}}, - author = {Naes, H. and Utkilen, H. C. and Post, A. F.}, - year = 1988, - journal = {Water Science and Technology}, - volume = 20, - pages = 125, - url = {http://dx.doi.org/10.2166/wst.1988.0233}, - number = {8-9}, - doi = {10.2166/wst.1988.0233} -} - -@Article{naes1989geosmin, - title = {Geosmin Production in the Cyanobacterium {{\textit{Oscillatoria brevis}}}}, - author = {Naes, Helga and Utkilen, Hc and Post, Af}, - year = 1989, - journal = {Archives of Microbiology}, - publisher = {Springer}, - volume = 151, - pages = {407--410}, - url = {https://link.springer.com/article/10.1007/bf00416598}, - number = 5, - doi = {10.1007/bf00416598} -} - -@Article{nagelkerke2014trophic, - title = {Trophic Niche-space Imaging, Using Resource and Consumer Traits}, - author = {Nagelkerke, Leopolda.j. and Rossberg, Axelg.}, - year = 2014, - journal = {Theoretical Ecology}, - publisher = {Springer Netherlands}, - volume = 7, - pages = {423--434}, - url = {http://dx.doi.org/10.1007/s12080-014-0229-5}, - number = 4, - doi = {10.1007/s12080-014-0229-5}, - language = {English} -} - -@InCollection{nakada2015flagellate, - title = {Chapter 6 - Flagellate Green Algae}, - author = {Takashi Nakada and Hisayoshi Nozaki}, - year = 2015, - booktitle = {Freshwater Algae of North America (second Edition)}, - publisher = {Academic Press}, - pages = {265--313}, - url = {http://www.sciencedirect.com/science/article/pii/b9780123858764000062}, - address = {Boston}, - isbn = {978-0-12-385876-4}, - doi = {10.1016/b978-0-12-385876-4.00006-2} -} - -@Article{nakashima1992iron, - title = {{iron Forms That Influence the Growth and Musty Odor Production of Selected Cyanobacteria}}, - author = {Nakashima, S. and Yagi, M.}, - year = 1992, - month = 01, - journal = {Water Science and Technology}, - volume = 25, - pages = {207--216}, - url = {https://doi.org/10.2166/wst.1992.0054}, - number = 2, - doi = {10.2166/wst.1992.0054} -} - -@Article{nalewajko2001effects, - title = {Effects of Temperature, and Availability of Nitrogen and Phosphorus on the Abundance of {{\textit{Anabaena}}} and {{\textit{Microcystis}}} in {Lake Biwa, Japan}: An Experimental Approach}, - author = {Nalewajko, C. and Murphy, T. P.}, - year = 2001, - journal = {Limnology}, - publisher = {Springer-verlag Tokyo}, - volume = 2, - pages = {45--48}, - url = {http://dx.doi.org/10.1007/s102010170015}, - language = {English}, - doi = {10.1007/s102010170015} -} - -@Article{naoshi2015community, - title = {Community Analysis of Picocyanobacteria in An Oligotrophic Lake by Cloning 16s Rrna Gene and 16s Rrna Gene Amplicon Sequencing}, - author = {Naoshi Fujimoto and Keigo Mizuno and Tomoki Yokoyama and Akihiro Ohnishi and Masaharu Suzuki and Satoru Watanabe and Kenji Komatsu and Yoichi Sakata and Naohiro Kishida and Michihiro Akiba and Satoko Matsukura}, - year = 2015, - journal = {The Journal of General and Applied Microbiology}, - volume = 61, - pages = {171--176}, - number = 5, - doi = {10.2323/jgam.61.171} -} - -@Article{narwani2013experimental, - title = {Experimental Evidence That Evolutionary Relatedness Does Not Affect the Ecological Mechanisms of Coexistence in Freshwater Green Algae}, - author = {Narwani, Anita and Alexandrou, Markos A. and Oakley, Todd H. and Carroll, Ian T. and Cardinale, Bradley J.}, - year = 2013, - journal = {Ecology Letters}, - volume = 16, - pages = {1373--1381}, - url = {http://dx.doi.org/10.1111/ele.12182}, - number = 11, - doi = {10.1111/ele.12182} -} - -@Article{naselliflores2000phytoplankton, - title = {Phytoplankton Assemblages in Twenty-one Sicilian Reservoirs: Relationships Between Species Composition and Environmental Factors}, - author = {Naselli-flores, Luigi}, - year = 2000, - journal = {Hydrobiologia}, - publisher = {Kluwer Academic Publishers}, - volume = 424, - pages = {1--11}, - url = {http://dx.doi.org/10.1023/a\%3a1003907124528}, - language = {English}, - doi = {10.1023/a:1003907124528} -} - -@Article{naselliflores2000phytoplanktondynamics, - title = {Phytoplankton Dynamics and Structure: A Comparative Analysis in Natural and Man-made Water Bodies of Different Trophic State}, - author = {Naselli-flores, Luigi and Barone, Rossella}, - year = 2000, - journal = {Hydrobiologia}, - publisher = {Kluwer Academic Publishers}, - volume = 438, - pages = {65--74}, - url = {http://dx.doi.org/10.1023/a%3a1004109912119}, - language = {English}, - doi = {10.1023/a:1004109912119} -} - -@Article{naselliflores2003man, - title = {Man-made Lakes in Mediterranean Semi-arid Climate: the Strange Case of Dr Deep Lake and Mr Shallow Lake}, - author = {Naselli-flores, Luigi}, - year = 2003, - journal = {Hydrobiologia}, - publisher = {Kluwer Academic Publishers}, - volume = {506--509}, - pages = {13--21}, - url = {http://dx.doi.org/10.1023/b%3ahydr.0000008550.34409.06}, - language = {English}, - doi = {10.1023/b:hydr.0000008550.34409.06} -} - -@Article{naselliflores2003steady, - title = {Steady-state Assemblages in A Mediterranean Hypertrophic Reservoir. the Role of {{\textit{Microcystis}}} Ecomorphological Variability in Maintaining An Apparent Equilibrium}, - author = {Naselli-flores, Luigi and Barone, Rossella}, - year = 2003, - journal = {Hydrobiologia}, - publisher = {Kluwer Academic Publishers}, - volume = 502, - pages = {133--143}, - url = {http://dx.doi.org/10.1023/b%3ahydr.0000004276.11436.40}, - language = {English}, - doi = {10.1023/b:hydr.0000004276.11436.40} -} - -@Article{naselliflores2005water, - title = {Water-level Fluctuations in Mediterranean Reservoirs: Setting A Dewatering Threshold As A Management Tool to Improve Water Quality}, - author = {Naselli-flores, Luigi and Barone, Rossella}, - year = 2005, - journal = {Hydrobiologia}, - volume = 548, - pages = {85--99}, - number = 1 -} - -@Article{naselliflores2007pluriannual, - title = {Pluriannual Morphological Variability of Phytoplankton in A Highly Productive Mediterranean Reservoir (lake Arancio, Southwestern Sicily)}, - author = {Naselli-flores, Luigi and Barone, Rossella}, - year = 2007, - journal = {Hydrobiologia}, - publisher = {Kluwer Academic Publishers}, - volume = 578, - pages = {87--95}, - url = {http://dx.doi.org/10.1007/s10750-006-0436-1}, - language = {English}, - doi = {10.1007/s10750-006-0436-1} -} - -@Article{naselliflores2007shape, - title = {Shape and Size in Phytoplankton Ecology: Do They Matter?}, - author = {Naselli-flores, Luigi and Padis{\'a}k, Judit and Albay, Meri{\c C}}, - year = 2007, - journal = {Hydrobiologia}, - publisher = {Kluwer Academic Publishers}, - volume = 578, - pages = {157--161}, - url = {http://dx.doi.org/10.1007/s10750-006-2815-z}, - language = {English}, - doi = {10.1007/s10750-006-2815-z} -} - -@Article{naselliflores2011fight, - title = {{fight on Plankton! Or, Phytoplankton Shape and Size As Adaptive Tools to Get Ahead in the Struggle for Life}}, - author = {Naselli-flores, Luigi and Barone, Rossella}, - type = {Review}, - year = 2011, - journal = {Cryptogamie Algologie}, - publisher = {Adac-cryptogamie}, - volume = 32, - pages = {157--204}, - language = {English}, - number = 2 -} - -@InCollection{naselliflores2011mediterranean, - title = {Mediterranean Climate and Eutrophication of Reservoirs: Limnological Skills to Improve Management}, - author = {Naselli-flores, Luigi}, - year = 2011, - booktitle = {Eutrophication: Causes, Consequences and Control}, - publisher = {Springer Netherlands}, - pages = {131--142}, - url = {http://dx.doi.org/10.1007/978-90-481-9625-8_6}, - language = {English}, - isbn = {978-90-481-9624-1}, - doi = {10.1007/978-90-481-9625-8_6} -} - -@Article{negoro1988blue, - title = {{blue-green Algae in {Lake Biwa} Which Produce Earthy-musty Odors}}, - author = {Negoro, T. and Ando, M. and Ichikawa, N.}, - year = 1988, - month = 08, - journal = {Water Science and Technology}, - volume = 20, - pages = {117--123}, - url = {https://doi.org/10.2166/wst.1988.0232}, - number = {8-9}, - doi = {10.2166/wst.1988.0232} -} - -@Article{neilan2013environmental, - title = {Environmental Conditions That Influence Toxin Biosynthesis in Cyanobacteria}, - author = {Neilan, Brett A. and Pearson, Leanne A. and Muenchhoff, Julia and Moffitt, Michelle C. and Dittmann, Elke}, - year = 2013, - journal = {Environmental Microbiology}, - publisher = {Blackwell Publishing Ltd}, - volume = 15, - pages = {1239--1253}, - url = {http://dx.doi.org/10.1111/j.1462-2920.2012.02729.x}, - number = 5, - doi = {10.1111/j.1462-2920.2012.02729.x} -} - -@Article{neukermans2012diurnal, - title = {Diurnal Variability of Turbidity and Light Attenuation in the Southern North Sea From the Seviri Geostationary Sensor}, - author = {G. Neukermans and K.g. Ruddick and N. Greenwood}, - year = 2012, - journal = {Remote Sensing of Environment}, - volume = 124, - pages = {564--580}, - url = {http://www.sciencedirect.com/science/article/pii/s0034425712002398}, - doi = {10.1016/j.rse.2012.06.003} -} - -@Book{newcombe2010management, - title = {Management Strategies for Cyanobacteria (blue-green Algae): A Guide for Water Utilities}, - author = {Gayle Newcombe and Jenny House and Lionel Ho and Peter Baker and Michael Burch}, - year = 2010, - publisher = {Water Quality Research Australia} -} - -@Book{newcombe2012international, - title = {International Guidance Manual for the Management of Toxic Cyanobacteria.}, - author = {Gayle Newcombe}, - year = 2012, - publisher = {{IWA} Publishing} -} - -@InCollection{nicholls2015chrysophyceae, - title = {Chapter 12 - Chrysophyceae and Phaeothamniophyceae}, - author = {Kenneth H. Nicholls and Daniel E. Wujek}, - year = 2015, - booktitle = {Freshwater Algae of North America (second Edition)}, - publisher = {Academic Press}, - pages = {537--586}, - url = {http://www.sciencedirect.com/science/article/pii/b9780123858764000128}, - address = {Boston}, - isbn = {978-0-12-385876-4}, - doi = {10.1016/b978-0-12-385876-4.00012-8} -} - -@InCollection{nicholls2015haptophyte, - title = {Chapter 13 - Haptophyte Algae}, - author = {Kenneth H. Nicholls}, - year = 2015, - booktitle = {Freshwater Algae of North America (second Edition)}, - publisher = {Academic Press}, - pages = {587--605}, - url = {http://www.sciencedirect.com/science/article/pii/b978012385876400013x}, - address = {Boston}, - isbn = {978-0-12-385876-4}, - doi = {10.1016/b978-0-12-385876-4.00013-x} -} - -@Article{nicklisch1991andreas, - title = {Competition Experiments With Two Planktic Blue-green Algae (oscillatoriaceae)}, - author = {Andreas Nicklisch and Birgit Roloff and Andreas Ratsch}, - year = 1991, - journal = {Sil Proceedings, 1922-2010}, - publisher = {Taylor \& Francis}, - volume = 24, - pages = {889--892}, - url = {https://doi.org/10.1080/03680770.1989.11898872}, - number = 2, - doi = {10.1080/03680770.1989.11898872}, - eprint = {https://doi.org/10.1080/03680770.1989.11898872} -} - -@Misc{nies2016lake, - title = {Lake Kasumigaura Database, National Institute for Environmental Studies, Japan}, - author = {Nies}, - year = 2016, - publisher = {National Institute for Environmental Studies}, - howpublished = {\url{http://db.cger.nies.go.jp/gem/moni-e/inter/gems/database/kasumi/index.html}}, - note = {Accessed: 2018-12-17} -} - -@Article{niu2009qun, - title = {群落构建的中性理论和生态位理论}, - author = {牛克昌 and 刘怿宁 and 沈泽昊 and 何芳良 and 方精云}, - year = 2009, - journal = {生物多样性}, - publisher = {生物多样性}, - volume = 17, - pages = 579, - url = {http://www.biodiversity-science.net/cn/abstract/article_8972.shtml}, - number = 6, - numpages = 14, - language = {Zh}, - doi = {10.3724/sp.j.1003.2009.09142} -} - -@Article{niu2011phytoplankton, - title = {Phytoplankton Community Succession Shaping Bacterioplankton Community Composition in {Lake Taihu}, {China}}, - author = {Yuan Niu and Hong Shen and Jun Chen and Ping Xie and Xi Yang and Min Tao and Zhimei Ma and Min Qi}, - year = 2011, - journal = {Water Research}, - volume = 45, - pages = {4169--4182}, - url = {http://www.sciencedirect.com/science/article/pii/s0043135411002855}, - number = 14, - doi = {10.1016/j.watres.2011.05.022} -} - -@Article{nixon1995coastal, - title = {Coastal Marine Eutrophication: A Definition, Social Causes, and Future Concerns}, - author = {Nixon, Scott W}, - year = 1995, - journal = {Ophelia}, - publisher = {Taylor \& Francis}, - volume = 41, - pages = {199--219}, - number = 1 -} - -@Article{noffke2003benthic, - title = {Benthic Cyanobacteria and Their Influence on the Sedimentary Dynamics of Peritidal Depositional Systems (siliciclastic, Evaporitic Salty, and Evaporitic Carbonatic)}, - author = {Nora Noffke and Gisela Gerdes and Thomas Klenke}, - year = 2003, - journal = {Earth-science Reviews}, - volume = 62, - pages = {163--176}, - url = {http://www.sciencedirect.com/science/article/pii/s0012825202001587}, - number = {1–2}, - doi = {10.1016/s0012-8252(02)00158-7} -} - -@InCollection{noges2010impact, - title = {The Impact of Variations in the Climate on Seasonal Dynamics of Phytoplankton}, - author = {N{\~o}ges, Peeter and Adrian, Rita and Anneville, Orlane and Arvola, Lauri and Blenckner, Thorsten and George, Glen and Jankowski, Thomas and Järvinen, Marko and Maberly, Stephen and Padisák, Judit and Straile, Dietmar and Teubner, Katrin and Weyhenmeyer, Gesa}, - year = 2010, - booktitle = {The Impact of Climate Change on European Lakes}, - publisher = {Springer Netherlands}, - volume = 4, - pages = {253--274}, - url = {http://dx.doi.org/10.1007/978-90-481-2945-4_14}, - isbn = {978-90-481-2944-7}, - doi = {10.1007/978-90-481-2945-4_14}, - language = {English} -} - -@Article{norici2005sulfur, - title = {Sulfur and Primary Production in Aquatic Environments: An Ecological Perspective}, - author = {Norici, Alessandra and Hell, Ruediger and Giordano, Mario}, - year = 2005, - journal = {Photosynthesis Research}, - publisher = {Springer}, - volume = 86, - pages = {409--417}, - number = 3 -} - -@Misc{nsbd2014south, - title = {South-to-north Water Diversion Project, {China}}, - author = {Snwdp, Commission of the State Council}, - year = 2014, - url = {http://www.nsbd.gov.cn/zx/english/mrp.htm}, - howpublished = {\url{http://www.nsbd.gov.cn/zx/english/mrp.htm}} -} - -@Article{nubel1997pcr, - title = {{PCR} Primers to Amplify {16S rRNA} Genes From Cyanobacteria}, - author = {Nübel, U and Garcia-pichel, F and Muyzer, G}, - year = 1997, - journal = {Applied and Environmental Microbiology}, - volume = 63, - pages = {3327--3332}, - url = {http://aem.asm.org/content/63/8/3327.abstract}, - number = 8 -} - -@Article{nystrom2012scale, - title = {Scale-dependent Influence of Environmental Variables on Species Distribution: A Case Study on Five Coastal Benthic Species in the {Baltic Sea}}, - author = {Nystr{\"o}m Sandman, Antonia and Wikstr?m, Sofia A. and Blomqvist, Mats and Kautsky, Hans and Isaeus, Martin}, - year = 2012, - journal = {Ecography}, - publisher = {Blackwell Publishing Ltd}, - pages = {No--no}, - url = {http://dx.doi.org/10.1111/j.1600-0587.2012.07053.x}, - doi = {10.1111/j.1600-0587.2012.07053.x} -} - -@Article{oberhaus2007comparative, - title = {Comparative Effects of the Quality and Quantity of Light and Temperature on the Growth of {{\textit{Planktothrix agardhii}}} and {{\textit{P. rubescens}}}}, - author = {L. Oberhaus and J. F. Briand and C. Leboulanger and S. Jacquet and J. F. Humbert}, - year = 2007, - journal = {Journal of Phycology}, - volume = 43, - pages = {1191--1199}, - url = {https://onlinelibrary.wiley.com/doi/abs/10.1111/j.1529-8817.2007.00414.x}, - number = 6, - doi = {10.1111/j.1529-8817.2007.00414.x} -} - -@Article{ochs1997population, - title = {Population Dynamics of Autotrophic Picoplankton in A Southeastern {U.S. Reservoir}}, - author = {Ochs, Clifford A. and Rhew, Kyeongsik}, - year = 1997, - journal = {Internationale Revue Der Gesamten Hydrobiologie Und Hydrographie}, - publisher = {Akademie Verlag, Berlin}, - volume = 82, - pages = {293--313}, - url = {http://dx.doi.org/10.1002/iroh.19970820302}, - number = 3, - doi = {10.1002/iroh.19970820302} -} - -@Book{odum1997ecology, - title = {Ecology: A Bridge Between Science and Society.}, - author = {Odum, Eugene Pleasants and Others}, - year = 1997, - publisher = {Sinauer Associates Incorporated} -} - -@Article{ofarrell2007phytoplankton, - title = {Phytoplankton Morphological Response to the Underwater Light Conditions in A Vegetated Wetland}, - author = {O'farrell, In{\'e}s and Tezanos Pinto, Paula and Izaguirre, Irina}, - year = 2007, - journal = {Hydrobiologia}, - publisher = {Kluwer Academic Publishers}, - volume = 578, - pages = {65--77}, - url = {http://dx.doi.org/10.1007/s10750-006-0434-3}, - language = {English}, - doi = {10.1007/s10750-006-0434-3} -} - -@Article{oh2000microcystin, - title = {Microcystin Production by {{\textit{Microcystis aeruginosa}}} in A Phosphorus-limited Chemostat}, - author = {Oh, Hee-mock and Lee, Seog June and Jang, Min-ho and Yoon, Byung-dae}, - year = 2000, - journal = {Applied and Environmental Microbiology}, - volume = 66, - pages = {176--179}, - url = {http://aem.asm.org/content/66/1/176.abstract}, - number = 1, - doi = {10.1128/aem.66.1.176-179.2000} -} - -@Article{ohkubo1993studies, - title = {Studies on the Succession of Blue‐green Algae, {{\textit{Microcystis}}}, {{\textit{Anabaena}}}, {{\textit{Oscillatoria}}} and {{\textit{Phormidium}}} in {Lake Kasumigaura}}, - author = {Norio Ohkubo and Osami Yagi and Mitsumasa Okada}, - year = 1993, - journal = {Environmental Technology}, - volume = 14, - pages = {433--442}, - url = {http://dx.doi.org/10.1080/09593339309385311}, - number = 5, - doi = {10.1080/09593339309385311}, - eprint = {http://dx.doi.org/10.1080/09593339309385311} -} - -@Article{ohkubo2017niche, - title = {A Niche for Cyanobacteria Producing Chlorophyll F Within A Microbial Mat}, - author = {Ohkubo, Satoshi and Miyashita, Hideaki}, - year = 2017, - month = {Jun}, - journal = {The Isme Journal}, - publisher = {International Society for Microbial Ecology}, - volume = 11, - pages = 2368, - url = {https://doi.org/10.1038/ismej.2017.98}, - note = {Original Article}, - doi = {10.1038/ismej.2017.98} -} - -@Article{oki2006global, - title = {Global Hydrological Cycles and World Water Resources}, - author = {Oki, Taikan and Kanae, Shinjiro}, - year = 2006, - journal = {Science}, - publisher = {American Association for the Advancement of Science}, - volume = 313, - pages = {1068--1072}, - url = {http://science.sciencemag.org/content/313/5790/1068}, - number = 5790, - doi = {10.1126/science.1128845} -} - -@Manual{oksanen2014vegan, - title = {Vegan: Community Ecology Package}, - author = {Jari Oksanen and F. Guillaume Blanchet and Roeland Kindt and Pierre Legendre and Peter R. Minchin and R. B. O'hara and Gavin L. Simpson and Peter Solymos and M. Henry H. Stevens and Helene Wagner}, - year = 2014, - url = {http://cran.r-project.org/package = vegan}, - note = {R Package Version 2.2-0} -} - -@Book{oliver1999darling, - title = {The Darling River: Algal Growth and the Cycling and Sources of Nutrients}, - author = {Oliver, R. L. and Hart, B. T. and Olley, J. and Grace, M. and Rees, C. and Caitcheon, G.}, - year = 1999, - publisher = {Crc for Freshwater Ecology}, - url = {http://www2.mdbc.gov.au/__data/page/307/darling_algal_growth-whole.pdf} -} - -@Article{olsen2016eutrophication, - title = {Eutrophication Mediates A Common Off-flavor Compound, 2-methylisoborneol, in A Drinking Water Reservoir}, - author = {Brianna K. Olsen and Michael F. Chislock and Alan E. Wilson}, - year = 2016, - journal = {Water Research}, - volume = 92, - pages = {228--234}, - url = {http://www.sciencedirect.com/science/article/pii/s0043135416300604}, - doi = {10.1016/j.watres.2016.01.058} -} - -@Article{oneil2012rise, - title = {The Rise of Harmful Cyanobacteria Blooms: the Potential Roles of Eutrophication and Climate Change}, - author = {J.m. O'neil and T.w. Davis and M.a. Burford and C.j. Gobler}, - year = 2012, - journal = {Harmful Algae}, - volume = 14, - pages = {313--334}, - url = {http://www.sciencedirect.com/science/article/pii/s1568988311001557}, - number = 0, - note = {Harmful Algae--the Requirement for Species-specific Information}, - doi = {10.1016/j.hal.2011.10.027} -} - -@Article{ornolfsdottir2004nutrient, - title = {Nutrient Pulsing As A Regulator of Phytoplankton Abundance and Community Composition in Galveston Bay, Texas}, - author = {{\"o}rn{\'o}lfsd{\'o}ttir, Erla B. and Lumsden, S. Elizabeth and Pinckney, James L.}, - year = 2004, - journal = {Journal of Experimental Marine Biology and Ecology}, - volume = 303, - pages = {197--220}, - url = {http://www.sciencedirect.com/science/article/pii/s0022098103005628}, - number = 2, - doi = {10.1016/j.jembe.2003.11.016} -} - -@Article{orsini2001microwave, - title = {A Microwave-based Method for Nucleic Acid Isolation From Environmental Samples}, - author = {Orsini, M. and Romano-spica, V.}, - year = 2001, - journal = {Letters in Applied Microbiology}, - publisher = {Blackwell Publishing Ltd}, - volume = 33, - pages = {17--20}, - url = {http://dx.doi.org/10.1046/j.1472-765x.2001.00938.x}, - number = 1, - doi = {10.1046/j.1472-765x.2001.00938.x} -} - -@InCollection{ott2015xanthophyte, - title = {Chapter 11 - Xanthophyte, Eustigmatophyte, and Raphidophyte Algae}, - author = {Donald W. Ott and Carla K. Oldham-ott and Nataliya Rybalka and Thomas Friedl}, - year = 2015, - booktitle = {Freshwater Algae of North America (second Edition)}, - publisher = {Academic Press}, - pages = {485--536}, - url = {http://www.sciencedirect.com/science/article/pii/b9780123858764000116}, - address = {Boston}, - isbn = {978-0-12-385876-4}, - doi = {10.1016/b978-0-12-385876-4.00011-6} -} - -@Article{ouellette2006toxic, - title = {Toxic {{\textit{Microcystis}}} Is Widespread in {Lake Erie}: {PCR} Detection of Toxin Genes and Molecular Characterization of Associated Cyanobacterial Communities}, - author = {Ouellette, Anthonyj.a. and Handy, Saram. and Wilhelm, Stevenw.}, - year = 2006, - journal = {Microbial Ecology}, - publisher = {Springer-verlag}, - volume = 51, - pages = {154--165}, - url = {http://dx.doi.org/10.1007/s00248-004-0146-z}, - number = 2, - doi = {10.1007/s00248-004-0146-z}, - language = {English} -} - -@Article{oyama2009application, - title = {Application of Spectral Decomposition Algorithm for Mapping Water Quality in A Turbid Lake (lake Kasumigaura, Japan) From Landsat Tm Data}, - author = {Youichi Oyama and Bunkei Matsushita and Takehiko Fukushima and Kazuo Matsushige and Akio Imai}, - year = 2009, - journal = {Isprs Journal of Photogrammetry and Remote Sensing}, - volume = 64, - pages = {73--85}, - url = {http://www.sciencedirect.com/science/article/pii/s0924271608000592}, - number = 1, - doi = {10.1016/j.isprsjprs.2008.04.005} -} - -@Article{padisak2003sinking, - title = {Sinking Properties of Some Phytoplankton Shapes and the Relation of Form Resistance to Morphological Diversity of Plankton - An Experimental Study}, - author = {Padis{\'a}k, Judit and Sor{\'o}czki-pint{\'e}r, {\'e}va and Rezner, Zsuzsanna}, - year = 2003, - journal = {Hydrobiologia}, - publisher = {Kluwer Academic Publishers}, - volume = 500, - pages = {243--257}, - url = {http://dx.doi.org/10.1023/a%3a1024613001147}, - language = {English}, - doi = {10.1023/a:1024613001147} -} - -@Article{padisak2006use, - title = {Use of Phytoplankton Assemblages for Monitoring Ecological Status of Lakes Within the Water Framework Directive: the Assemblage Index}, - author = {Padis{\'a}k, Judit and Borics, G{\'a}bor and Grigorszky, Istv{\'a}n and Sor{\'o}czki-pint{\'e}r, {\'e}va}, - year = 2006, - journal = {Hydrobiologia}, - publisher = {Kluwer Academic Publishers}, - volume = 553, - pages = {1--14}, - url = {http://dx.doi.org/10.1007/s10750-005-1393-9}, - language = {English}, - doi = {10.1007/s10750-005-1393-9} -} - -@Article{padisak2009use, - title = {Use and Misuse in the Application of the Phytoplankton Functional Classification: A Critical Review With Updates}, - author = {Padis{\'a}k, Judit and Crossetti, Lucianeo. and Naselli-flores, Luigi}, - year = 2009, - journal = {Hydrobiologia}, - publisher = {Springer Netherlands}, - volume = 621, - pages = {1--19}, - url = {http://dx.doi.org/10.1007/s10750-008-9645-0}, - language = {English}, - number = 1, - doi = {10.1007/s10750-008-9645-0} -} - -@Article{padisak2010rarity, - title = {Rarity, Ecological Memory, Rate of Floral Change in Phytoplankton---and the Mystery of the Red Cock}, - author = {Padis{\'a}k, Judit and Hajnal, {\'e}va and Krienitz, Lothar and Lakner, J{\'o}zsef and üveges, Vikt{\'o}ria}, - year = 2010, - journal = {Hydrobiologia}, - volume = 653, - pages = {45--64}, - url = {http://dx.doi.org/10.1007/s10750-010-0344-2}, - number = 1, - doi = {10.1007/s10750-010-0344-2} -} - -@Article{paerl1997coastal, - title = {Coastal Eutrophication and Harmful Algal Blooms: Importance of Atmospheric Deposition and Groundwater As" New" Nitrogen and Other Nutrient Sources}, - author = {Paerl, Hans W}, - year = 1997, - journal = {Limnology and Oceanography}, - publisher = {Jstor}, - pages = {1154--1165} -} - -@Article{paerl2008blooms, - title = {Blooms Like It Hot}, - author = {Paerl, Hans W. and Huisman, Jef}, - year = 2008, - journal = {Science}, - volume = 320, - pages = {57--58}, - url = {http://www.sciencemag.org/content/320/5872/57.short}, - number = 5872, - doi = {10.1126/science.1155398} -} - -@Article{paerl2009climate, - title = {Climate Change: A Catalyst for Global Expansion of Harmful Cyanobacterial Blooms}, - author = {Paerl, Hans W. and Huisman, Jef}, - year = 2009, - journal = {Environmental Microbiology Reports}, - publisher = {Blackwell Publishing Ltd}, - volume = 1, - pages = {27--37}, - url = {http://dx.doi.org/10.1111/j.1758-2229.2008.00004.x}, - number = 1, - doi = {10.1111/j.1758-2229.2008.00004.x} -} - -@Article{paerl2011controllingharmful, - title = {Controlling Harmful Cyanobacterial Blooms in A Hyper-eutrophic Lake (lake Taihu, {China}): the Need for A Dual Nutrient (n \& P) Management Strategy}, - author = {Hans W. Paerl and Hai Xu and Mark J. Mccarthy and Guangwei Zhu and Boqiang Qin and Yiping Li and Wayne S. Gardner}, - year = 2011, - journal = {Water Research}, - volume = 45, - pages = {1973--1983}, - url = {http://www.sciencedirect.com/science/article/pii/s0043135410006585}, - number = 5, - doi = {10.1016/j.watres.2010.09.018} -} - -@Article{paerl2012climate, - title = {Climate Change: Links to Global Expansion of Harmful Cyanobacteria}, - author = {Hans W. Paerl and Valerie J. Paul}, - year = 2012, - journal = {Water Research}, - volume = 46, - pages = {1349--1363}, - url = {http://www.sciencedirect.com/science/article/pii/s0043135411004386}, - number = 5, - note = {Cyanobacteria: Impacts of Climate Change on Occurrence, Toxicity and Water Quality Management}, - doi = {10.1016/j.watres.2011.08.002} -} - -@Article{paerl2013blooms, - title = {Blooms Bite the Hand That Feeds Them}, - author = {Paerl, Hans W. and Otten, Timothy G.}, - year = 2013, - journal = {Science}, - volume = 342, - pages = {433--434}, - url = {http://www.sciencemag.org/content/342/6157/433.short}, - number = 6157, - doi = {10.1126/science.1245276} -} - -@Article{paerl2013harmful, - title = {Harmful Cyanobacterial Blooms: Causes, Consequences, and Controls}, - author = {Paerl, Hans W. and Otten, Timothy G.}, - year = 2013, - journal = {Microbial Ecology}, - volume = 65, - pages = {995--1010}, - url = {https://doi.org/10.1007/s00248-012-0159-y}, - number = 4, - doi = {10.1007/s00248-012-0159-y} -} - -@Article{paerl2014mitigating, - title = {Mitigating Harmful Cyanobacterial Blooms in A Human- and Climatically-impacted World}, - author = {Paerl, Hans W.}, - year = 2014, - journal = {Life}, - volume = 4, - pages = {988--1012}, - url = {https://www.mdpi.com/2075-1729/4/4/988}, - number = 4, - doi = {10.3390/life4040988} -} - -@Article{paerl2017controlling, - title = {Controlling Cyanobacterial Harmful Blooms in Freshwater Ecosystems}, - author = {Paerl, Hans W.}, - year = 2017, - journal = {Microbial Biotechnology}, - volume = 10, - pages = {1106--1110}, - url = {https://sfamjournals.onlinelibrary.wiley.com/doi/abs/10.1111/1751-7915.12725}, - number = 5, - doi = {10.1111/1751-7915.12725}, - eprint = {https://sfamjournals.onlinelibrary.wiley.com/doi/pdf/10.1111/1751-7915.12725} -} - -@Article{palenik1992multiple, - title = {{multiple Evolutionary Origins of Prochlorophytes, the Chlorophyll B-containing Prokaryotes}}, - author = {Palenik, B and Haselkorn, R}, - type = {{article}}, - year = 1992, - month = {{jan 16}}, - publisher = {{macmillan Magazines Ltd}}, - volume = {{355}}, - pages = {{265--267}}, - language = {{english}}, - number = {{6357}}, - doi = {{10.1038/355265a0}}, - journal = {{nature}} -} - -@Article{palmer1999radiometry, - title = {Radiometry and Photometry Faq}, - author = {Palmer, J. M. and Carroll, L.}, - year = 1999, - journal = {Url: http://www.optics.arizona.edu/palmer/rpfag/rpfag.htm\#motivation} -} - -@Article{palmer2000radiometry, - title = {Radiometry and Photometry: Units and Conversions}, - author = {Palmer, J. M.}, - year = 2000, - journal = {Handbook of Optics}, - volume = 2 -} - -@PhDThesis{pan2008dian, - title = {滇池与洱海的鱼腥藻及其生态生理与毒理学研究}, - author = {潘晓杰 and 刘永定}, - school = {中国科学院研究生院}, - year = 2008 -} - -@Article{pan2009mouse, - title = {Mouse Toxicity of {{\textit{Anabaena flos-aquae}}} From {Lake Dianchi}, {China}}, - author = {Pan, Xiaojie and Chang, Fengyi and Liu, Yongding and Li, Dunhai and Xu, Aihua and Shen, Yinwu and Huang, Zebo}, - year = 2009, - journal = {Environmental Toxicology}, - publisher = {Wiley Subscription Services, Inc., A Wiley Company}, - volume = 24, - pages = {10--18}, - url = {http://dx.doi.org/10.1002/tox.20385}, - number = 1, - doi = {10.1002/tox.20385} -} - -@Article{pan2011inlake, - title = {In-lake Algal Bloom Removal and Submerged Vegetation Restoration Using Modified Local Soils}, - author = {Gang Pan and Bo Yang and Dan Wang and Hao Chen and Binghui Tian and Mulan Zhang and Xianzheng Yuan and Juan Chen}, - year = 2011, - journal = {Ecological Engineering}, - volume = 37, - pages = {302--308}, - url = {http://www.sciencedirect.com/science/article/pii/s0925857410003137}, - number = 2, - doi = {10.1016/j.ecoleng.2010.11.019} -} - -@MastersThesis{pan2013shu, - title = {束丝藻中鱼腥藻毒素合成的分子基础研究}, - author = {潘倩倩 and 李仁辉}, - school = {中国科学院大学}, - year = 2013 -} - -@Article{pan2013ting, - title = {亭下水库伪鱼腥藻昼夜垂直变化初步研究}, - author = {潘双叶 and 赵洋甬 and 胡建林}, - year = 2013, - volume = 2013, - pages = {136--138}, - journaltitle = {现代科学仪器}, - number = 03 -} - -@Article{pan2014cancer, - title = {Cancer Risk Assessment on Trihalomethanes and Haloacetic Acids in Drinking Water of {China} Using Disability-adjusted Life Years}, - author = {Shenling Pan and Wei An and Hongyan Li and Ming Su and Jinliang Zhang and Min Yang}, - year = 2014, - journal = {Journal of Hazardous Materials}, - volume = 280, - pages = {288--294}, - url = {http://www.sciencedirect.com/science/article/pii/s0304389414006578}, - number = 0, - doi = {10.1016/j.jhazmat.2014.07.080}, - other = {author4} -} - -@Article{pandey2007biotreatment, - title = {Biotreatment of Waste Gas Containing Pyridine in A Biofilter}, - author = {R.a. Pandey and K.v. Padoley and S.s. Mukherji and S.n. Mudliar and A.n. Vaidya and A.s. Rajvaidya and T.v. Subbarao}, - year = 2007, - journal = {Bioresource Technology}, - volume = 98, - pages = {2258--2267}, - url = {http://www.sciencedirect.com/science/article/pii/s0960852406002136}, - number = 12, - doi = {10.1016/j.biortech.2006.05.015} -} - -@MastersThesis{pang2013tai, - title = {太湖浮游细菌群落组成时空格局的研究}, - author = {庞兴红 and 谢平}, - school = {中国科学院大学}, - year = 2013 -} - -@Article{parinet2010influence, - title = {Influence of Water Quality on the Presence of Off-flavour Compounds (geosmin and 2-methylisoborneol)}, - author = {Julien Parinet and Manuel J. Rodriguez and Jean S{\'e}rodes}, - year = 2010, - journal = {Water Research}, - volume = 44, - pages = {5847--5856}, - url = {http://www.sciencedirect.com/science/article/pii/s0043135410004677}, - number = 20, - doi = {10.1016/j.watres.2010.06.070} -} - -@Article{parinet2013modelling, - title = {Modelling Geosmin Concentrations in Three Sources of Raw Water in Quebec, Canada}, - author = {Parinet, Julien and Rodriguez, Manuelj. and S{\'e}rodes, Jean-baptiste}, - year = 2013, - journal = {Environmental Monitoring and Assessment}, - publisher = {Springer Netherlands}, - volume = 185, - pages = {95--111}, - url = {http://dx.doi.org/10.1007/s10661-012-2536-x}, - language = {English}, - doi = {10.1007/s10661-012-2536-x} -} - -@Article{park1998temporal, - title = {Temporal Variabilities of the Concentrations of Intra- and Extracellular Microcystin and Toxic {{\textit{Microcystis}}} Species in A Hypertrophic Lake, {Lake Suwa, Japan} (1991--1994)}, - author = {Park, Ho-dong and Iwami, Chie and Watanabe, Mariyo F. and Harada, Ken-ichi and Okino, Tokio and Hayashi, Hidetake}, - year = 1998, - journal = {Environmental Toxicology and Water Quality}, - publisher = {Wiley Subscription Services, Inc., A Wiley Company}, - volume = 13, - pages = {61--72}, - url = {http://dx.doi.org/10.1002/(sici)1098-2256(1998)13:1<61::aid-tox4>3.0.co;2-5}, - number = 1, - doi = {10.1002/(sici)1098-2256(1998)13:1<61::aid-tox4>3.0.co;2-5} -} - -@Article{pasciak1974transport, - title = {Transport Limitation of Nutrient Uptake in Phytoplankton}, - author = {Pasciak, W. J. and Gavis, J.}, - year = 1974, - journal = {Limnology and Oceanography}, - publisher = {Jstor}, - pages = {881--888} -} - -@Article{passarge2006competition, - title = {Competition for Nutrients and Light: Stable Coexistence, Alternative Stable States, Or Competitive Exclusion?}, - author = {Passarge, Jutta and Hol, Suzanne and Escher, Marieke and Huisman, Jef}, - year = 2006, - journal = {Ecological Monographs}, - publisher = {Eco Soc America}, - volume = 76, - pages = {57--72}, - number = 1 -} - -@Article{pasztaleniec2008winter, - title = {Winter Phytoplankton Communities in Different Depths of Three Mesotrophic Lakes ({\l}{\k{e}}czna-w{\l}odawa Lakeland, Eastern Poland)}, - author = {Pasztaleniec, Agnieszka and Lenard, Tomasz}, - year = 2008, - journal = {Biologia}, - volume = 63, - pages = {294--301}, - number = 3 -} - -@Article{pattinson2003invasibility, - title = {Invasibility of A Reservoir to Exotic {{\textit{Daphnia Lumholtzi}}}: Experimental Assessment of Diet Selection and Life History Responses to Cyanobacteria}, - author = {Pattinson, K. R. and Havel, J. E. and Rhodes, R. G.}, - year = 2003, - journal = {Freshwater Biology}, - publisher = {Blackwell Science Ltd}, - volume = 48, - pages = {233--246}, - url = {http://dx.doi.org/10.1046/j.1365-2427.2003.00987.x}, - number = 2, - doi = {10.1046/j.1365-2427.2003.00987.x} -} - -@Article{pearson1895note, - title = {Note on Regression and Inheritance in the Case of Two Parents}, - author = {Karl Pearson}, - year = 1895, - journal = {Proceedings of the Royal Society of London}, - publisher = {The Royal Society}, - volume = 58, - pages = {240--242}, - url = {http://www.jstor.org/stable/115794} -} - -@Article{pedersen1996nutrient, - title = {Nutrient Control of Algal Growth in Estuarine Waters. Nutrient Limitation and the Importance of Nitrogen Requirements and Nitrogen Storage Among Phytoplankton and Species of Macroalgae}, - author = {Pedersen, Morten Foldager and Borum, Jens}, - year = 1996, - journal = {Marine Ecology Progress Series. Oldendorf}, - volume = 142, - pages = {261--272}, - number = 1 -} - -@Article{pei2009wu, - title = {武汉东湖底栖藻类对磷的滞留作用}, - author = {裴国凤 and 刘国祥 and 胡征宇}, - year = 2009, - journal = {环境科学学报}, - volume = 29, - pages = {840--845}, - number = 4, - language = {Zh} -} - -@Article{peisert2005quenching, - title = {Quenching Beijing's Thirst: the Need for Integrated Management for the Endangered {Miyun Reservoir}}, - author = {Peisert, C. and Sternfeld, E.}, - year = 2005, - journal = {China Environment Series}, - volume = 7, - pages = {33--45}, - url = {http://www.wilsoncenter.org/sites/default/files/ces%207%20feature%20article,%20pp.%2033-46.pdf} -} - -@Article{peng2015bao, - title = {保障饮用水安全是当务之急}, - author = {彭东昱}, - year = 2015, - volume = 2015, - pages = {13--14}, - journaltitle = {中国人大}, - number = 16 -} - -@Article{pepin2002benthic, - title = {Benthic Responses to Groundwater-surface Water Exchange in 2 Alluvial Rivers in Northwestern Montana}, - author = {Pepin, David M. and Hauer, F. Richard}, - year = 2002, - month = sep, - journal = {Journal of the North American Benthological Society}, - booktitle = {Journal of the North American Benthological Society}, - publisher = {The Society for Freshwater Science}, - volume = 21, - pages = {370--383}, - url = {http://www.jnabs.org/doi/abs/10.2307/1468476}, - number = 3, - doi = {10.2307/1468476}, - comment = {Doi: 10.2307/1468476} -} - -@Article{pereira2000paralytic, - title = {Paralytic Shellfish Toxins in the Freshwater Cyanobacterium {\it Aphanizomenon flos-aquae}, Isolated From {Montargil Reservoir}, {Portugal}}, - author = {Paulo Pereira and Hideyuki Onodera and Dar{\'r}o Andrinolo and Susana Franca and Filomena Ara{\'u}jo and N{\'e}stor Lagos and Yasukatsu Oshima}, - year = 2000, - journal = {Toxicon}, - publisher = {Elsevier}, - volume = 38, - pages = {1689--1702}, - url = {http://www.sciencedirect.com/science/article/pii/s0041010100001008}, - number = 12, - doi = {10.1016/s0041-0101(00)00100-8} -} - -@Article{perelman2013operation, - title = {Operation of Remote Mobile Sensors for Security of Drinking Water Distribution Systems}, - author = {By Lina Perelman and Avi Ostfeld}, - year = 2013, - journal = {Water Research}, - volume = 47, - pages = {4217--4226}, - url = {http://www.sciencedirect.com/science/article/pii/s0043135413003771}, - number = 13, - doi = {10.1016/j.watres.2013.04.048} -} - -@Article{peretyatko2012biomanipulation, - title = {Biomanipulation of Hypereutrophic Ponds: When It Works and Why It Fails}, - author = {Peretyatko, Anatoly and Teissier, Samuel and De Backer, Sylvia and Triest, Ludwig}, - year = 2012, - journal = {Environmental Monitoring and Assessment}, - publisher = {Springer}, - volume = 184, - pages = {1517--1531}, - number = 3 -} - -@Article{persson1983offflavours, - title = {Off-flavours in Aquatic Ecosystems {\textendash} An Introduction}, - author = {Persson, Per-edvin}, - year = 1983, - journal = {Water Science and Technology}, - publisher = {Iwa Publishing}, - volume = 15, - pages = {1--11}, - url = {http://wst.iwaponline.com/content/15/6-7/1}, - number = {6-7} -} - -@Article{persson1988odorous, - title = {Odorous Algal Cultures in Culture Collections}, - author = {Persson, Per-edvin}, - year = 1988, - journal = {Water Science \& Technology}, - volume = 20, - pages = {211--213}, - number = {8-9} -} - -@Article{peter2009occurrence, - title = {Occurrence of Dissolved and Particle-bound Taste and Odor Compounds in Swiss Lake Waters}, - author = {Andreas Peter and Oliver K{\"o}ster and Andrea Schildknecht and Urs Von Gunten}, - year = 2009, - journal = {Water Research}, - volume = 43, - pages = {2191--2200}, - url = {http://www.sciencedirect.com/science/article/pii/s0043135409001092}, - number = 8, - doi = {10.1016/j.watres.2009.02.016} -} - -@Article{peterson1995physiological, - title = {Physiological Toxicity, Cell Membrane Damage and the Release of Dissolved Organic Carbon and Geosmin by {{\textit{Aphanizomenon flos-aquae}}} After Exposure to Water Treatment Chemicals}, - author = {Hans G. Peterson and Steve E. Hrudey and Ilene A. Cantin and Terrina R. Perley and Sandra L. Kenefick}, - year = 1995, - journal = {Water Research}, - volume = 29, - pages = {1515--1523}, - url = {http://www.sciencedirect.com/science/article/pii/004313549400300v}, - number = 6, - doi = {10.1016/0043-1354(94)00300-v} -} - -@Article{peterson2001predicting, - title = {Predicting Species Invasions Using Ecological Niche Modeling: New Approaches From Bioinformatics Attack A Pressing Problem: A New Approach to Ecological Niche Modeling, Based on New Tools Drawn From Biodiversity Informatics, Is Applied to the Challenge of Predicting Potential Species' Invasions}, - author = {Peterson, A. Townsend and Vieglais, David A.}, - year = 2001, - journal = {Bioscience}, - volume = 51, - pages = {363--371}, - url = {http://bioscience.oxfordjournals.org/content/51/5/363.short}, - number = 5, - doi = {10.1641/0006-3568(2001)051[0363:psiuen]2.0.co;2}, - eprint = {http://bioscience.oxfordjournals.org/content/51/5/363.full.pdf+html} -} - -@Article{peterson2001predictingb, - title = {Predicting Species' Geographic Distributions Based on Ecological Niche Modeling}, - author = {Peterson, A. Townsend}, - year = 2001, - month = {Aug}, - journal = {The Condor}, - publisher = {Cooper Ornithological Society}, - volume = 103, - pages = {599--605}, - url = {http://dx.doi.org/10.1650/0010-5422(2001)103[0599:psgdbo]2.0.co;2}, - number = 3, - doi = {10.1650/0010-5422(2001)103[0599:psgdbo]2.0.co;2} -} - -@Article{peterson2003predicting, - title = {Predicting the Geography of Species’ Invasions Via Ecological Niche Modeling}, - author = {A Townsend Peterson}, - year = 2003, - journal = {The Quarterly Review of Biology}, - publisher = {The University of Chicago Press}, - volume = 78, - pages = {Pp. 419--433}, - url = {http://www.jstor.org/stable/10.1086/378926}, - jstor_articletype = {review-article}, - number = 4, - language = {English} -} - -@Article{phamthi2005simulation, - title = {Simulation of Three-dimensional Phytoplankton Dynamics: Competition in Light-limited Environments}, - author = {N.n. Pham Thi and J. Huisman and B.p. Sommeijer}, - year = 2005, - journal = {Journal of Computational and Applied Mathematics}, - volume = 174, - pages = {57--77}, - url = {http://www.sciencedirect.com/science/article/pii/s0377042704001712}, - number = 1, - doi = {10.1016/j.cam.2004.03.023} -} - -@Article{phillips2002winter, - title = {Winter Phytoplankton Blooms Under Ice Associated With Elevated Oxygen Levels}, - author = {Phillips, Karen A. and Fawley, Marvin W.}, - year = 2002, - journal = {Journal of Phycology}, - publisher = {Blackwell Science Inc}, - volume = 38, - pages = {1068--1073}, - url = {http://dx.doi.org/10.1046/j.1529-8817.2002.01044.x}, - number = 6, - doi = {10.1046/j.1529-8817.2002.01044.x} -} - -@Article{phlips1983role, - title = {Role of Light Intensity and Temperature in the Regulation of Hydrogen Photoproduction by the Marine Cyanobacterium {{\textit{Oscillatoria}}} sp. strain {Miami Bg7}}, - author = {Phlips, E. J. and Mitsui, A.}, - year = 1983, - journal = {Applied and Environmental Microbiology}, - publisher = {American Society for Microbiology Journals}, - volume = 45, - pages = {1212--1220}, - url = {https://aem.asm.org/content/45/4/1212}, - number = 4 -} - -@Article{phlips2011scales, - title = {Scales of Temporal and Spatial Variability in the Distribution of Harmful Algae Species in {the Indian River Lagoon}, {Florida}, {USA}}, - author = {Edward J. Phlips and Susan Badylak and Mary Christman and Jennifer Wolny and Julie Brame and Jay Garland and Lauren Hall and Jane Hart and Jan Landsberg and Margaret Lasi and Jean Lockwood and Richard Paperno and Doug Scheidt and Ariane Staples and Karen Steidinger}, - year = 2011, - journal = {Harmful Algae}, - volume = 10, - pages = {277--290}, - url = {http://www.sciencedirect.com/science/article/pii/s1568988310001216}, - number = 3, - doi = {10.1016/j.hal.2010.11.001} -} - -@Article{pimentel2004water, - title = {Water Resources: Agricultural and Environmental Issues}, - author = {Pimentel, David and Berger, Bonnie and Filiberto, David and Newton, Michelle and Wolfe, Benjamin and Karabinakis, Elizabeth and Clark, Steven and Poon, Elaine and Abbett, Elizabeth and Nandagopal, Sudha}, - year = 2004, - journal = {Bioscience}, - volume = 54, - pages = {909--918}, - url = {http://bioscience.oxfordjournals.org/content/54/10/909.abstract}, - number = 10, - doi = {10.1641/0006-3568(2004)054[0909:wraaei]2.0.co;2}, - eprint = {http://bioscience.oxfordjournals.org/content/54/10/909.full.pdf+html} -} - -@Article{plate2002flood, - title = {Flood Risk and Flood Management}, - author = {Erich J. Plate}, - year = 2002, - journal = {Journal of Hydrology}, - volume = 267, - pages = {2--11}, - url = {http://www.sciencedirect.com/science/article/pii/s002216940200135x}, - number = {1–2}, - note = {Advances in Flood Research}, - doi = {10.1016/s0022-1694(02)00135-x} -} - -@Article{ploeg1991geosmin, - title = {Geosmin Production by Cyanobacteria (blue-green Algae) in Fish Ponds At Auburn, Alabama}, - author = {Van Der Ploeg, Martine and Boyd, Claude E.}, - year = 1991, - journal = {Journal of the World Aquaculture Society}, - publisher = {Blackwell Publishing Ltd}, - volume = 22, - pages = {207--216}, - url = {http://dx.doi.org/10.1111/j.1749-7345.1991.tb00736.x}, - number = 4, - doi = {10.1111/j.1749-7345.1991.tb00736.x} -} - -@Article{pobel2011influence, - title = {Influence of Sampling Strategies on the Monitoring of Cyanobacteria in Shallow Lakes: Lessons From A Case Study in France}, - author = {David Pobel and Jo?l Robin and Jean-fran?ois Humbert}, - year = 2011, - journal = {Water Research}, - volume = 45, - pages = {1005--1014}, - url = {http://www.sciencedirect.com/science/article/pii/s0043135410007062}, - number = 3, - doi = {10.1016/j.watres.2010.10.011} -} - -@Article{porter1980use, - title = {The Use of Dapi for Identifying and Counting Aquatic Microflora1}, - author = {Porter, Karen G. and Feig, Yvette S.}, - year = 1980, - journal = {Limnology and Oceanography}, - volume = 25, - pages = {943--948}, - url = {http://dx.doi.org/10.4319/lo.1980.25.5.0943}, - number = 5, - doi = {10.4319/lo.1980.25.5.0943} -} - -@Article{posch2012harmful, - title = {Harmful Filamentous Cyanobacteria Favoured by Reduced Water Turnover With Lake Warming}, - author = {Posch, Thomas and K{\"o}ster, Oliver and Salcher, Michaela M and Pernthaler, Jakob}, - year = 2012, - journal = {Nature Climate Change}, - publisher = {Nature Publishing Group}, - volume = 2, - pages = 809, - url = {https://doi.org/10.1038/nclimate1581}, - number = 11, - doi = {10.1038/nclimate1581} -} - -@Article{post1985interactions, - title = {{interactions Between Temperature and Light Intensity on Growth and Photosynthesis of the Cyanobacterium {{\textit{Oscillatoria agardhii}}}}}, - author = {Post, Anton F. and De Wit, Rutger and Mur, Luuc R.}, - year = 1985, - month = 01, - journal = {Journal of Plankton Research}, - volume = 7, - pages = {487--495}, - url = {https://dx.doi.org/10.1093/plankt/7.4.487}, - number = 4, - doi = {10.1093/plankt/7.4.487} -} - -@Article{post1985regulation, - title = {Regulation of Growth and Photosynthesis by {{\textit{Oscillatoria agardhii}}} Grown With A Light/dark Cycle}, - author = {Anton F. Post and Johan G. Loogman and Luuc R. Mur}, - year = 1985, - journal = {Fems Microbiology Letters}, - volume = 31, - pages = {97--102}, - url = {http://www.sciencedirect.com/science/article/pii/0378109785900059}, - number = 2, - doi = {10.1016/0378-1097(85)90005-9} -} - -@Article{pouria1998fatal, - title = {Fatal Microcystin Intoxication in Haemodialysis Unit in Caruaru, Brazil}, - author = {Shideh Pouria and A De Andrade and J Barbosa and Rl Cavalcanti and Vts Barreto and Cj Ward and W Preiser and Grace K Poon and Gh Neild and Ga Codd}, - year = 1998, - journal = {The Lancet}, - volume = 352, - pages = {21--26}, - number = 9121 -} - -@Article{prepas1988sediment, - title = {Sediment–water Interactions in Farm Dugouts Previously Treated With Copper Sulfate}, - author = {E. E. Prepas and T. P. Murphy}, - year = 1988, - journal = {Lake and Reservoir Management}, - publisher = {Taylor \& Francis}, - volume = 4, - pages = {161--168}, - url = {https://doi.org/10.1080/07438148809354391}, - number = 1, - doi = {10.1080/07438148809354391}, - eprint = {https://doi.org/10.1080/07438148809354391} -} - -@Book{prescott1951algae, - title = {Algae of the Western Great Lakes Area: Exclusive of Desmids and Diatoms}, - author = {Prescott, G.w.}, - year = 1951, - publisher = {Cranbrook Institute of Science} -} - -@Article{presting2006identification, - title = {Identification of Conserved Regions in the Plastid Genome: Implications for Dna Barcoding and Biological Function}, - author = {Gernot G.prestingg.g. Presting}, - year = 2006, - journal = {Canadian Journal of Botany}, - volume = 84, - pages = {1434--1443}, - url = {http://dx.doi.org/10.1139/b06-117}, - number = 9, - doi = {10.1139/b06-117}, - eprint = {http://dx.doi.org/10.1139/b06-117} -} - -@Article{proulx2012spatio, - title = {Spatio-temporal Variability of Tastes and Odors of Drinking Water Within A Distribution System}, - author = {Proulx, F. and Rodriguez, M.j. and S{\'e}rodes, J.b. and Bouchard, C.}, - year = 2012, - journal = {Journal of Environmental Management}, - publisher = {Elsevier}, - volume = 105, - pages = {12--20} -} - -@Article{provasoli1957development, - title = {The Development of Artificial Media for Marine Algae}, - author = {Provasoli, L. and Mclaughlin, J.j.a. and Droop, M.r.}, - year = 1957, - journal = {Archiv Für Mikrobiologie}, - publisher = {Springer-verlag}, - volume = 25, - pages = {392--428}, - url = {http://dx.doi.org/10.1007/bf00446694}, - language = {English}, - doi = {10.1007/bf00446694} -} - -@Article{prus1999diversity, - title = {Diversity of Invertebrate Fauna in Littoral of Shallow Myczkowce Dam Reservoir in Comparison With A Deep Solina Dam Reservoir}, - author = {Prus, Tadeusz and Prus, Miros{\l}awa and Bijok, Pawe{\l}}, - year = 1999, - journal = {Hydrobiologia}, - publisher = {Kluwer Academic Publishers}, - volume = {408--409}, - pages = {203--210}, - url = {http://dx.doi.org/10.1023/a%3a1017015515507}, - language = {English}, - doi = {10.1023/a:1017015515507} -} - -@Article{qi2012development, - title = {Development of Models for Predicting the Predominant Taste and Odor Compounds in Taihu Lake, {China}}, - author = {Qi,, Min and Chen,, Jun and Sun,, Xiaoxue and Deng,, Xuwei and Niu,, Yuan and Xie,, Ping}, - year = 2012, - month = 12, - journal = {Plos One}, - publisher = {Public Library of Science}, - volume = 7, - pages = {E51976}, - url = {http://dx.doi.org/10.1371%2fjournal.pone.0051976}, - number = 12, - doi = {10.1371/journal.pone.0051976} -} - -@Article{qian2010effects, - title = {Effects of Copper Sulfate, Hydrogen Peroxide and N-phenyl-2-naphthylamine on Oxidative Stress and the Expression of Genes Involved Photosynthesis and Microcystin Disposition in {{\textit{Microcystis aeruginosa}}}}, - author = {Haifeng Qian and Shuqiong Yu and Zhengqi Sun and Xiucai Xie and Weiping Liu and Zhengwei Fu}, - year = 2010, - journal = {Aquatic Toxicology}, - volume = 99, - pages = {405--412}, - url = {http://www.sciencedirect.com/science/article/pii/s0166445x10002110}, - number = 3, - doi = {10.1016/j.aquatox.2010.05.018} -} - -@Article{qin2007taihu, - title = {太湖富营养化与蓝藻水华引起的饮用水危机——原因与对策}, - author = {秦伯强 and 王小冬 and 汤祥明 and 冯胜 and 张运林}, - year = 2007, - volume = 22, - pages = {896--906}, - journaltitle = {地球科学进展}, - number = 09, - language = {Zh} -} - -@Article{qin2010drinking, - title = {A Drinking Water Crisis in {Lake Taihu, {China}}: Linkage to Climatic Variability and Lake Management}, - author = {Qin, Boqiang and Zhu, Guangwei and Gao, Guang and Zhang, Yunlin and Li, Wei and Paerl, Hansw. and Carmichael, Waynew.}, - year = 2010, - journal = {Environmental Management}, - publisher = {Springer-verlag}, - volume = 45, - pages = {105--112}, - url = {http://dx.doi.org/10.1007/s00267-009-9393-6}, - language = {English}, - doi = {10.1007/s00267-009-9393-6} -} - -@Article{qiu2011china, - title = {China to Spend Billions Cleaning Up Groundwater}, - author = {Qiu, Jane}, - year = 2011, - journal = {Science}, - volume = 334, - pages = 745, - url = {http://www.sciencemag.org/content/334/6057/745.short}, - number = 6057, - doi = {10.1126/science.334.6057.745} -} - -@Manual{r2012r, - title = {R: A Language and Environment for Statistical Computing}, - author = {{r Core Team}}, - year = 2012, - url = {http://www.r-project.org/}, - note = {{isbn} 3-900051-07-0}, - organization = {R Foundation for Statistical Computing}, - address = {Vienna, Austria} -} - -@Manual{r2014r, - title = {R: A Language and Environment for Statistical Computing}, - author = {{r Core Team}}, - year = 2014, - url = {http://www.r-project.org/}, - organization = {R Foundation for Statistical Computing}, - address = {Vienna, Austria} -} - -@Manual{r2016r, - title = {R: A Language and Environment for Statistical Computing}, - author = {{r Core Team}}, - year = 2016, - url = {https://www.r-project.org/}, - organization = {R Foundation for Statistical Computing}, - address = {Vienna, Austria} -} - -@Manual{r2017r, - title = {R: A Language and Environment for Statistical Computing}, - author = {{R Core Team}}, - year = 2017, - url = {https://www.r-project.org/}, - organization = {R Foundation for Statistical Computing}, - address = {Vienna, Austria} -} - -@Manual{r2020r, - title = {R: A Language and Environment for Statistical Computing}, - author = {{R Core Team}}, - year = 2020, - url = {https://www.r-project.org/}, - organization = {R Foundation for Statistical Computing}, - address = {Vienna, Austria} -} - -@Manual{r2021r, - title = {{R}: A Language and Environment for Statistical Computing}, - author = {{R Core Team}}, - year = 2021, - url = {https://www.r-project.org/}, - organization = {R Foundation for Statistical Computing}, - address = {Vienna, Austria} -} - -@Manual{r2022r, - title = {{R}: A Language and Environment for Statistical Computing}, - author = {{R Core Team}}, - year = 2022, - url = {https://www.r-project.org/}, - organization = {R Foundation for Statistical Computing}, - address = {Vienna, Austria} -} - -@Article{rantala2008identification, - title = {Identification of Hepatotoxin-producing Cyanobacteria by {Dna-chip}}, - author = {Rantala, Anne and Rizzi, Ermanno and Castiglioni, Bianca and De Bellis, Gianluca and Sivonen, Kaarina}, - year = 2008, - journal = {Environmental Microbiology}, - publisher = {Blackwell Publishing Ltd}, - volume = 10, - pages = {653--664}, - url = {http://dx.doi.org/10.1111/j.1462-2920.2007.01488.x}, - number = 3, - doi = {10.1111/j.1462-2920.2007.01488.x} -} - -@Article{rapala1997variation, - title = {Variation of Microcystins, Cyanobacterial Hepatotoxins, in {{\textit{Anabaena}}} spp.~as A Function of Growth Stimuli.}, - author = {Rapala, J and Sivonen, K and Lyra, C and Niemel{\ = a}, S I}, - year = 1997, - journal = {Applied and Environmental Microbiology}, - volume = 63, - pages = {2206--12}, - url = {http://aem.asm.org/content/63/6/2206.abstract}, - number = 6 -} - -@Article{rashash1995influence, - title = {The Influence of Growth Conditions on Odor-compound Production by Two Chrysophytes and Two Cyanobacteria}, - author = {D.m. C. Rashash and A.m. Dietrich and R.c. Hoehn and B.c. Parker}, - year = 1995, - journal = {Water Science and Technology}, - volume = 31, - pages = {165--172}, - url = {http://www.sciencedirect.com/science/article/pii/027312239500472y}, - number = 11, - note = {Off-flavours in the Aquatic Environment 1994selected Proceedings of the 4th International Symposium on Off-flavours in the Aquatic Environment}, - doi = {10.1016/0273-1223(95)00472-y} -} - -@Article{rasmussen2007use, - title = {Use of Dna Melting Simulation Software for in Silico Diagnostic Assay Design: Targeting Regions With Complex Melting Curves and Confirmation by {Real-time PCR} Using Intercalating Dyes}, - author = {Rasmussen, John and Saint, Christopher and Monis, Paul}, - year = 2007, - journal = {Bmc Bioinformatics}, - volume = 8, - pages = 107, - url = {http://www.biomedcentral.com/1471-2105/8/107}, - number = 1, - doi = {10.1186/1471-2105-8-107} -} - -@Article{rasmussen2008development, - title = {Development and Field Testing of A {Real-time PCR} Assay for Cylindrospermopsin-producing Cyanobacteria}, - author = {Rasmussen, J.p. and Giglio, S. and Monis, P.t. and Campbell, R.j. and Saint, C.p.}, - year = 2008, - journal = {Journal of Applied Microbiology}, - publisher = {Blackwell Publishing Ltd}, - volume = 104, - pages = {1503--1515}, - url = {http://dx.doi.org/10.1111/j.1365-2672.2007.03676.x}, - number = 5, - doi = {10.1111/j.1365-2672.2007.03676.x} -} - -@Article{rasmussen2008rapid, - title = {Rapid Preparation of Cyanobacterial Dna for {Real-time PCR} Analysis}, - author = {Rasmussen, J.p. and Barbez, P.h. and Burgoyne, L.a. and Saint, C.p.}, - year = 2008, - journal = {Letters in Applied Microbiology}, - publisher = {Blackwell Publishing Ltd}, - volume = 46, - pages = {14--19}, - url = {http://dx.doi.org/10.1111/j.1472-765x.2007.02252.x}, - number = 1, - doi = {10.1111/j.1472-765x.2007.02252.x} -} - -@Article{raven1984cost, - title = {A Cost-benefit Analysis of Photon Absorption by Photosynthetic Unicells}, - author = {Raven, J. A.}, - year = 1984, - journal = {New Phytologist}, - publisher = {Blackwell Publishing Ltd}, - volume = 98, - pages = {593--625}, - url = {http://dx.doi.org/10.1111/j.1469-8137.1984.tb04152.x}, - number = 4, - doi = {10.1111/j.1469-8137.1984.tb04152.x} -} - -@Article{raxworthy2007applications, - title = {Applications of Ecological Niche Modeling for Species Delimitation: A Review and Empirical Evaluation Using Day Geckos (phelsuma) From Madagascar}, - author = {Raxworthy, Christopher J. and Ingram, Colleen M. and Rabibisoa, Nirhy and Pearson, Richard G. and Weins, John}, - year = 2007, - journal = {Systematic Biology}, - volume = 56, - pages = {907--923}, - url = {+ http://dx.doi.org/10.1080/10635150701775111}, - number = 6, - doi = {10.1080/10635150701775111}, - eprint = {/oup/backfile/content_public/journal/sysbio/56/6/10.1080_10635150701775111/3/56-6-907.pdf} -} - -@Article{read2014simulating, - title = {Simulating 2368 Temperate Lakes Reveals Weak Coherence in Stratification Phenology}, - author = {Jordan S. Read and Luke A. Winslow and Gretchen J.a. Hansen and Jamon Van Den Hoek and Paul C. Hanson and Louise C. Bruce and Corey D. Markfort}, - year = 2014, - journal = {Ecological Modelling}, - volume = 291, - pages = {142--150}, - url = {http://www.sciencedirect.com/science/article/pii/s0304380014003664}, - doi = {10.1016/j.ecolmodel.2014.07.029} -} - -@Article{reda2004solar, - title = {Solar Position Algorithm for Solar Radiation Applications}, - author = {Ibrahim Reda and Afshin Andreas}, - year = 2004, - journal = {Solar Energy}, - volume = 76, - pages = {577--589}, - url = {http://www.sciencedirect.com/science/article/pii/s0038092x0300450x}, - number = 5, - doi = {10.1016/j.solener.2003.12.003} -} - -@Article{remias2013hydrurus, - title = {Hydrurus-related Golden Algae (chrysophyceae) Cause Yellow Snow in Polar Summer Snowfields}, - author = {Remias, Daniel and Jost, Steffen and Boenigk, Jens and Wastian, Johann and Lütz, Cornelius}, - year = 2013, - journal = {Phycological Research}, - volume = 61, - pages = {277--285}, - url = {http://dx.doi.org/10.1111/pre.12025}, - number = 4, - doi = {10.1111/pre.12025} -} - -@Article{ren2012guang, - title = {光照强度及温度对青草沙水库蓝藻暴发风险的模拟试验}, - author = {任翔宇 and 王铭玮 and 顾詠洁 and 杨凯 and 徐启新}, - year = 2012, - journal = {净水技术}, - volume = 31, - pages = {55--60}, - number = 4, - language = {Zh} -} - -@Article{ren2014spatiotemporal, - title = {Spatiotemporal Distribution Pattern of Cyanobacteria Community and Its Relationship With the Environmental Factors in Hongze Lake, {China}}, - author = {Ren, Ying and Pei, Haiyan and Hu, Wenrong and Tian, Chang and Hao, Daping and Wei, Jielin and Feng, Yawei}, - year = 2014, - month = {Oct}, - journal = {Environmental Monitoring and Assessment}, - volume = 186, - pages = {6919--6933}, - url = {https://doi.org/10.1007/s10661-014-3899-y}, - number = 10, - doi = {10.1007/s10661-014-3899-y} -} - -@Article{ren2018dynamics, - title = {Dynamics and Determinants of Amoeba Community, Occurrence and Abundance in Subtropical Reservoirs and Rivers}, - author = {Kexin Ren and Yuanyuan Xue and Regin Rønn and Lemian Liu and Huihuang Chen and Christopher Rensing and Jun Yang}, - year = 2018, - journal = {Water Research}, - volume = 146, - pages = {177--186}, - url = {http://www.sciencedirect.com/science/article/pii/s0043135418307152}, - doi = {10.1016/j.watres.2018.09.011} -} - -@InCollection{reston2018occurrence, - title = {Occurrence of Cyanobacteria, Microcystin, and Taste-and-odor Compounds in {Cheney Reservoir}, {Kansas}, 2001-16}, - author = {U. S. Geological Survey and Graham, Jennifer L. and Foster, Guy M. and Williams, Thomas J. and Kramer, Ariele R. and Harris, Theodore D.}, - year = 2017, - booktitle = {Scientific Investigations Report}, - pages = 68, - url = {http://pubs.er.usgs.gov/publication/sir20175016}, - address = {Reston, Va}, - doi = {10.3133/sir20175016}, - isbn = {2017-5016} -} - -@Article{reynolds1975water, - title = {Water-blooms}, - author = {Reynolds, C. S. and Walsby, A. E.}, - year = 1975, - journal = {Biological Reviews}, - publisher = {Blackwell Publishing Ltd}, - volume = 50, - pages = {437--481}, - url = {http://dx.doi.org/10.1111/j.1469-185x.1975.tb01060.x}, - number = 4, - doi = {10.1111/j.1469-185x.1975.tb01060.x} -} - -@Article{reynolds1976seasonal, - title = {Seasonal Variations in the Vertical Distribution and Buoyancy of {{\textit{Microcystis aeruginosa}}} {Kütz. Emend. Elenkin} in {Rostherne Mere, England}}, - author = {Reynolds, C. S. and Rogers, D. A.}, - year = 1976, - journal = {Hydrobiologia}, - volume = 48, - pages = {17--23}, - url = {http://dx.doi.org/10.1007/bf00033486}, - number = 1, - doi = {10.1007/bf00033486} -} - -@Article{reynolds1987cyanobacterial, - title = {Cyanobacterial Dominance: the Role of Buoyancy Regulation in Dynamic Lake Environments}, - author = {Reynolds, Colin S. and Oliver, Rod L. and Walsby, Anthony E.}, - year = 1987, - journal = {New Zealand Journal of Marine and Freshwater Research}, - volume = 21, - pages = {379--390}, - url = {http://www.tandfonline.com/doi/abs/10.1080/00288330.1987.9516234}, - number = 3, - doi = {10.1080/00288330.1987.9516234}, - eprint = {http://www.tandfonline.com/doi/pdf/10.1080/00288330.1987.9516234} -} - -@Article{reynolds1987cyanobacterial2, - title = {Cyanobacterial Water-blooms}, - author = {Reynolds, Colin S}, - year = 1987, - journal = {Advances in Botanical Research}, - publisher = {Academic Press}, - volume = 13, - pages = {67--143} -} - -@Article{reynolds1999metabolic, - title = {Metabolic Sensitivities of Lacustrine Ecosystems to Anthropogenic Forcing}, - author = {Reynolds, Colin S.}, - year = 1999, - journal = {Aquatic Sciences}, - publisher = {Birkh{\"a}user Verlag}, - volume = 61, - pages = {183--205}, - url = {http://dx.doi.org/10.1007/s000270050061}, - doi = {10.1007/s000270050061} -} - -@Article{reynolds2002towards, - title = {Towards A Functional Classification of the Freshwater Phytoplankton}, - author = {Reynolds, Colin S. and Huszar, Vera and Kruk, Carla and Naselli-flores, Luigi and Melo, Sergio}, - year = 2002, - journal = {Journal of Plankton Research}, - volume = 24, - pages = {417--428}, - url = {http://plankt.oxfordjournals.org/content/24/5/417.abstract}, - number = 5, - doi = {10.1093/plankt/24.5.417}, - eprint = {http://plankt.oxfordjournals.org/content/24/5/417.full.pdf+html} -} - -@Book{reynolds2006ecology, - title = {Ecology of Phytoplankton}, - author = {Reynolds, Colin S.}, - year = 2006, - publisher = {Cambridge University Press}, - address = {Cambridge} -} - -@Article{rhew2013growth, - title = {{growth Characteristics of Blue-green Algae ({\textit{Anabaena Spiroides}}) Causing Tastes and Odors in the North-han River, Korea}}, - author = {Doug-hee Rhew and Kyung-a You and Myeong-seop Byeon and Seok-jea Youn and Soon-jin Hwang}, - year = 2013, - journal = {{korean Journal of Ecology and Environment}}, - publisher = {The Korean Society of Limnology}, - volume = {{46}}, - pages = {135--144}, - url = {http://www.jksl.or.kr/journalarticle.php?code = 19131}, - booltitle = {{vol.46 No.1}} -} - -@Article{ricciardi2000recent, - title = {Recent Mass Invasion of the North American Great Lakes by Ponto–caspian Species}, - author = {Anthony Ricciardi and Hugh J. Macisaac}, - year = 2000, - journal = {Trends in Ecology \& Evolution}, - volume = 15, - pages = {62--65}, - url = {http://www.sciencedirect.com/science/article/pii/s0169534799017450}, - number = 2, - doi = {10.1016/s0169-5347(99)01745-0} -} - -@Article{ridal1999occurrence, - title = {Occurrence of the Odor Compounds, 2-methylisoborneol and Geosmin in Eastern Lake Ontario and the Upper St. Lawrence River}, - author = {Jeffrey J. Ridal and Brian Brownlee and David R.s. Lean}, - year = 1999, - journal = {Journal of Great Lakes Research}, - volume = 25, - pages = {198--204}, - url = {http://www.sciencedirect.com/science/article/pii/s0380133099707288}, - number = 1, - doi = {10.1016/s0380-1330(99)70728-8} -} - -@Article{riddolls1985aspects, - title = {Aspects of Nitrogen Fixation in Lough Neagh. Ii. Competition Between {{\textit{Aphanizomenon flos-aquae}}}, {{\textit{Oscillatoria Redekei}}} and {{\textit{Oscillatoria agardhii}}}}, - author = {Riddolls, Anthea}, - year = 1985, - journal = {Freshwater Biology}, - volume = 15, - pages = {299--306}, - url = {https://onlinelibrary.wiley.com/doi/abs/10.1111/j.1365-2427.1985.tb00202.x}, - number = 3, - doi = {10.1111/j.1365-2427.1985.tb00202.x}, - eprint = {https://onlinelibrary.wiley.com/doi/pdf/10.1111/j.1365-2427.1985.tb00202.x} -} - -@Article{riegman1985effects, - title = {Effects of Photoperiodicity and Light Irradiance on Phosphate-limited {{\textit{Oscillatoria agardhii}}} in Chemostat Cultures}, - author = {Riegman, Roel and Rutgers, Michiel and Mur, Ruuc R.}, - year = 1985, - month = {Jun}, - journal = {Archives of Microbiology}, - volume = 142, - pages = {66--71}, - url = {https://doi.org/10.1007/bf00409239}, - number = 1, - doi = {10.1007/bf00409239} -} - -@Article{riekenberg2014phytoplankton, - title = {Phytoplankton Community Shifts and Harmful Algae Presence in A Diversion Influenced Estuary}, - author = {Riekenberg, Jessica and Bargu, Sibel and Twilley, Robert}, - year = 2014, - journal = {Estuaries and Coasts}, - publisher = {Springer Us}, - pages = {1--14}, - url = {http://dx.doi.org/10.1007/s12237-014-9925-z}, - doi = {10.1007/s12237-014-9925-z}, - language = {English} -} - -@Article{rigosi2012hydrostatic, - title = {Hydraulic Control of Short-term Successional Changes in the Phytoplankton Assemblage in Stratified Reservoirs}, - author = {Anna Rigosi and Francisco J. Rueda}, - year = 2012, - journal = {Ecological Engineering}, - volume = 44, - pages = {216--226}, - url = {http://www.sciencedirect.com/science/article/pii/s0925857412001309}, - number = 0, - doi = {10.1016/j.ecoleng.2012.04.012} -} - -@Article{riley1957phytoplankton, - title = {Phytoplankton of the North Central Sargasso Sea, 1950–521}, - author = {Riley, Gordon A.}, - year = 1957, - journal = {Limnology and Oceanography}, - volume = 2, - pages = {252--270}, - url = {https://aslopubs.onlinelibrary.wiley.com/doi/abs/10.1002/lno.1957.2.3.0252}, - number = 3, - doi = {10.1002/lno.1957.2.3.0252}, - eprint = {https://aslopubs.onlinelibrary.wiley.com/doi/pdf/10.1002/lno.1957.2.3.0252} -} - -@Article{rippka1979generic, - title = {Generic Assignments, Strain Histories and Properties of Pure Cultures of Cyanobacteria}, - author = {Rippka, Rosmarie and Deruelles, Josette and Waterbury, John B. and Herdman, Michael and Stanier, Roger Y.}, - year = 1979, - journal = {Journal of General Microbiology}, - volume = 111, - pages = {1--61}, - url = {http://mic.sgmjournals.org/content/111/1/1.abstract}, - number = 1, - doi = {10.1099/00221287-111-1-1}, - eprint = {http://mic.sgmjournals.org/content/111/1/1.full.pdf+html} -} - -@Article{ririe1997product, - title = {Product Differentiation by Analysis of Dna Melting Curves During the Polymerase Chain Reaction}, - author = {Kirk M. Ririe and Randy P. Rasmussen and Carl T. Wittwer}, - year = 1997, - journal = {Analytical Biochemistry}, - volume = 245, - pages = {154--160}, - url = {http://www.sciencedirect.com/science/article/pii/s0003269796999169}, - number = 2, - doi = {10.1006/abio.1996.9916} -} - -@Article{robarts1987temperature, - title = {Temperature Effects on Photosynthetic Capacity, Respiration, and Growth Rates of Bloom‐forming Cyanobacteria}, - author = {Robarts, Richard D. and Zohary, Tamar}, - year = 1987, - journal = {New Zealand Journal of Marine and Freshwater Research}, - volume = 21, - pages = {391--399}, - url = {http://dx.doi.org/10.1080/00288330.1987.9516235}, - number = 3, - doi = {10.1080/00288330.1987.9516235}, - eprint = {http://dx.doi.org/10.1080/00288330.1987.9516235} -} - -@Article{rocap2002resolution, - title = {Resolution of {{\textit{Prochlorococcus}}} and {{\textit{Synechococcus}}} Ecotypes by Using 16s-23s Ribosomal Dna Internal Transcribed Spacer Sequences}, - author = {Rocap, Gabrielle and Distel, Daniel L. and Waterbury, John B. and Chisholm, Sallie W.}, - year = 2002, - journal = {Applied and Environmental Microbiology}, - volume = 68, - pages = {1180--1191}, - url = {http://aem.asm.org/content/68/3/1180.abstract}, - number = 3, - doi = {10.1128/aem.68.3.1180-1191.2002} -} - -@Book{rodenacker2001semi, - title = {(semi-) Automatic Recognition of Microorganisms in Water}, - author = {Rodenacker, K. and Gais, P. and Jutting, U. and Hense, B. A.}, - year = 2001, - booktitle = {2001 International Conference on Image Processing, Vol Iii, Proceedings}, - publisher = {Ieee}, - pages = {30--33}, - language = {English}, - note = {International Conference on Image Processing (icip 2001), Thessaloniki, Greece, Oct 07-10, 2001}, - isbn = {0-7803-6725-1}, - organization = {Ieee Signal Processing Soc; Ieee} -} - -@Article{rodi1987examples, - title = {Examples of Calculation Methods for Flow and Mixing in Stratified Fluids}, - author = {Rodi, Wolfgang}, - year = 1987, - journal = {Journal of Geophysical Research: Oceans (1978--2012)}, - publisher = {Wiley Online Library}, - volume = 92, - pages = {5305--5328}, - number = {C5} -} - -@Article{rodriguez2002elucidation, - title = {Elucidation of the Methylerythritol Phosphate Pathway for Isoprenoid Biosynthesis in Bacteria and Plastids. A Metabolic Milestone Achieved Through Genomics}, - author = {Rodrı́guez-concepción, Manuel and Boronat, Albert}, - year = 2002, - journal = {Plant Physiology}, - publisher = {American Society of Plant Biologists}, - volume = 130, - pages = {1079--1089}, - url = {http://www.plantphysiol.org/content/130/3/1079}, - number = 3, - doi = {10.1104/pp.007138} -} - -@Article{rohrlack2008oligopeptide, - title = {Oligopeptide Chemotypes of the Toxic Freshwater Cyanobacterium {{\textit{Planktothrix}}} Can Form Subpopulations With Dissimilar Ecological Traits}, - author = {Rohrlack, Thomas and Edvardsen, Bente and Skulberg, Randi and Halstvedt, Camilla B. and Utkilen, Hans C. and Ptacnik, Robert and Skulberg, Olav M.}, - year = 2008, - month = {Jul}, - journal = {Limnology and Oceanography}, - publisher = {Amer Soc Limnology Oceanography}, - volume = 53, - pages = {1279--1293}, - number = 4, - doi = {10.4319/lo.2008.53.4.1279}, - author-email = {Thomas.rohrlack@niva.no} -} - -@Article{rojo1994population, - title = {Population Dynamics of {{\textit{Limnothrix Redekei}}}, {{\textit{Oscillatoria Lanceaeformis}}}, {{\textit{Planktothrix agardhii}}} and {{\textit{Pseudanabaena limnetica}}} (cyanobacteria) in A Shallow Hypertrophic Lake (spain)}, - author = {Rojo, C. and Alvarez Cobelas, M.}, - year = 1994, - journal = {Hydrobiologia}, - publisher = {Kluwer Academic Publishers}, - volume = {275-276}, - pages = {165--171}, - url = {http://dx.doi.org/10.1007/bf00026708}, - language = {English}, - doi = {10.1007/bf00026708} -} - -@Article{rolando1988relationships, - title = {Relationships Between Air Temperature, Depth, Nutrients and Chlorophyll in 103 Argentinian Lakes}, - author = {Rolando Quiros}, - year = 1988, - journal = {Sil Proceedings, 1922-2010}, - publisher = {Taylor \& Francis}, - volume = 23, - pages = {647--658}, - url = {https://doi.org/10.1080/03680770.1987.11899688}, - number = 2, - doi = {10.1080/03680770.1987.11899688}, - eprint = {https://doi.org/10.1080/03680770.1987.11899688} -} - -@Article{rolland2009assessing, - title = {Assessing Phytoplankton Structure and Spatio-temporal Dynamics in A Freshwater Ecosystem Using A Powerful Multiway Statistical Analysis}, - author = {Anne Rolland and Frédéric Bertrand and Myriam Maumy and Stéphan Jacquet}, - year = 2009, - journal = {Water Research}, - volume = 43, - pages = {3155--3168}, - url = {http://www.sciencedirect.com/science/article/pii/s0043135409002140}, - number = 13, - doi = {10.1016/j.watres.2009.03.049} -} - -@Article{rong2018nan, - title = {南方某市水源臭味物质识别及分布研究}, - author = {荣超 and 韩小波 and 张金松 and 于建伟 and 苏命}, - year = 2018, - volume = 54, - pages = {32--37}, - journaltitle = {给水排水}, - number = 08 -} - -@Article{rothhaupt1988mechanistic, - title = {Mechanistic Resource Competition Theory Applied to Laboratory Experiments With Zooplankton}, - author = {Rothhaupt, Karl O.}, - year = 1988, - month = {Jun}, - journal = {Nature}, - volume = 333, - pages = {660--662}, - url = {http://dx.doi.org/10.1038/333660a0}, - number = 6174, - doi = {10.1038/333660a0} -} - -@Article{rothhaupt1996laboratorary, - title = {Laboratorary Experiments With A Mixotrophic Chrysophyte and Obligately Phagotrophic and Photographic Competitors}, - author = {Rothhaupt, Karl O.}, - year = 1996, - journal = {Ecology}, - publisher = {Ecological Society of America}, - volume = 77, - pages = {Pp. 716--724}, - url = {http://www.jstor.org/stable/2265496}, - number = 3, - language = {English} -} - -@Article{ryding1989control, - title = {Control of Eutrophication of Lakes and Reservoirs}, - author = {Ryding, Sven-olof and Rast, Walter}, - year = 1989, - journal = {Manual the Biosphere Series}, - publisher = {Parthenon Publishing Group}, - volume = 1 -} - -@Article{saadoun2001environmental, - title = {Environmental and Nutritional Factors Affecting Geosmin Synthesis by *anabaena* sp.}, - author = {Ismail M.k Saadoun and Kevin K Schrader and Willard T Blevins}, - year = 2001, - journal = {Water Research}, - volume = 35, - pages = {1209--1218}, - url = {http://www.sciencedirect.com/science/article/pii/s004313540000381x}, - number = 5, - doi = {10.1016/s0043-1354(00)00381-x} -} - -@Article{saadoun2001identification, - title = {Identification of Geosmin As A Volatile Metabolite of {{\textit{Anabaena}}}~sp.}, - author = {Saadoun, Ismail and Schrader, Kevin K. and Blevins, Willard T.}, - year = 2001, - journal = {Journal of Basi Microbiology}, - publisher = {Wiley-v C H Verlag Gmbh}, - volume = 41, - pages = {51--55}, - journaltitle = {Memoranda Societatis Pro Fauna Et Flora Fennica}, - language = {English}, - number = 1, - doi = {10.1002/1521-4028(200103)41:1<51::aid-jobm51>3.0.co;2-r}, - address = {Po Box 10 11 61, D-69451 Berlin, Germany} -} - -@Article{sabart2010spatiaotemporal, - title = {Spatiotemporal Variations in Microcystin Concentrations and in the Proportions of Microcystin-producing Cells in Several {{\textit{Microcystis aeruginosa}}} Populations}, - author = {Sabart, M. and Pobel, D. and Briand, E. and Combourieu, B. and Salen{\c{c}}on, M. J. and Humbert, J. F. and Latour, D.}, - year = 2010, - journal = {Applied and Environmental Microbiology}, - volume = 76, - pages = {4750--4759}, - url = {http://aem.asm.org/content/76/14/4750.abstract}, - number = 14, - doi = {10.1128/aem.02531-09} -} - -@Article{sabour2005dynamics, - title = {Dynamics and Toxicity of {{\textit{Anabaena Aphanizomenoides}}} (cyanobacteria) Waterblooms in the Shallow Brackish Oued Mellah Lake (morocco)}, - author = {Sabour, B. and Loudiki, M. and Oudra, B. and Vasconcelos, V. and Oubraim, S. and Fawzi, B.}, - year = 2005, - journal = {Aquatic Ecosystem Health \& Management}, - publisher = {Taylor \& Francis}, - volume = 8, - pages = {95--104}, - number = 1 -} - -@Article{safferman1967earthy, - title = {Earthy-smelling Substance From A Blue-green Alga}, - author = {Safferman, R. S. and Rosen, A. A. and Mashni, C. I. and Morris, M. E.}, - year = 1967, - journal = {Environmental Science \& Technology}, - volume = 1, - pages = {429--430}, - url = {http://pubs.acs.org/doi/abs/10.1021/es60005a009}, - number = 5, - doi = {10.1021/es60005a009}, - eprint = {http://pubs.acs.org/doi/pdf/10.1021/es60005a009} -} - -@Article{saito1980rapid, - title = {Rapid-sand-filter Clogging by Diatoms: {\it Synedra Acus} and {\it Synedra Ulna}}, - author = {Saito, S. and Hirono, A.}, - year = 1980, - journal = {Water and Waste}, - pages = {311--316}, - volume = 22 -} - -@InCollection{salmaso2012preface, - title = {Preface: Phytoplankton Responses to Human Impacts At Different Scales}, - author = {Salmaso, Nico and Naselli-flores, Luigi and Cerasino, Leonardo and Flaim, Giovanna and Tolotti, Monica and Padis{\'a}k, Judit}, - year = 2012, - booktitle = {Phytoplankton Responses to Human Impacts At Different Scales}, - publisher = {Springer}, - pages = {1--3} -} - -@Article{saloranta2007mylake, - title = {Mylake--a Multi-year Lake Simulation Model Code Suitable for Uncertainty and Sensitivity Analysis Simulations}, - author = {Tuomo M. Saloranta and Tom Andersen}, - year = 2007, - journal = {Ecological Modelling}, - volume = 207, - pages = {45--60}, - url = {http://www.sciencedirect.com/science/article/pii/s0304380007001548}, - number = 1, - note = {uncertainty in Ecological Models}, - doi = {10.1016/j.ecolmodel.2007.03.018} -} - -@Article{santanna2007planktic, - title = {Planktic Cyanobacteria From Upper Tiete Basin Reservoirs, Sp, {Brazil}}, - author = {Sant'anna, C{e\'}lia L. and Melcher, Silvia S. and Carvalho, Maria Do Carmo and Gelmego, Marcina P. and Azevedo, Maria Teresa De P.}, - year = 2007, - month = 03, - journal = {{brazilian Journal of Botany}}, - publisher = {Scielo}, - volume = 30, - pages = {1--17}, - url = {http://www.scielo.br/scielo.php?script = sci_arttext&pid = s0100-84042007000100002&nrm = iso} -} - -@Article{sapp2007bacterial, - title = {Bacterial Community Dynamics During the Winter–spring Transition in the North Sea}, - author = {Sapp, Melanie and Wichels, Antje and Wiltshire, Karen H. and Gerdts, Gunnar}, - year = 2007, - journal = {Fems Microbiology Ecology}, - publisher = {Blackwell Publishing Ltd}, - volume = 59, - pages = {622--637}, - url = {http://dx.doi.org/10.1111/j.1574-6941.2006.00238.x}, - number = 3, - doi = {10.1111/j.1574-6941.2006.00238.x} -} - -@Book{sarkar2008lattice, - title = {Lattice, Multivariate Data Visualization}, - author = {Deepayan Sarkar}, - year = 2008, - publisher = {Springer} -} - -@Article{sato2013assessing, - title = {Assessing the Infection Risk of Giardia and Cryptosporidium in Public Drinking Water Delivered by Surface Water Systems in Sao Paulo State, Brazil}, - author = {Maria Ines Z. Sato and Ana Tereza Galvani and Jose Antonio Padula and Adelaide Cassia Nardocci and Marcelo De Souza Lauretto and Maria Tereza Pepe Razzolini and Elayse Maria Hachich}, - year = 2013, - journal = {Science of the Total Environment}, - volume = 442, - pages = {389--396}, - url = {http://www.sciencedirect.com/science/article/pii/s0048969712012776}, - number = 0, - doi = {10.1016/j.scitotenv.2012.09.077} -} - -@Article{savichtcheva2011quantitative, - title = {Quantitative PCR Enumeration of Total/toxic {{\textit{Planktothrix rubescens}}} and Total Cyanobacteria in Preserved Dna Isolated From Lake Sediments}, - author = {Savichtcheva, Olga and Debroas, Didier and Kurmayer, Rainer and Villar, Clement and Jenny, Jean Philippe and Arnaud, Fabien and Perga, Marie Elodie and Domaizon, Isabelle}, - year = 2011, - journal = {Applied and Environmental Microbiology}, - volume = 77, - pages = {8744--8753}, - url = {http://aem.asm.org/content/77/24/8744.abstract}, - number = 24, - doi = {10.1128/aem.06106-11} -} - -@Article{scheffer1997dominance, - title = {On the Dominance of Filamentous Cyanobacteria in Shallow, Turbid Lakes}, - author = {Scheffer, Marten and Rinaldi, Sergio and Gragnani, Alessandra and Mur, Luuc R. and Van Nes, Egbert H.}, - year = 1997, - journal = {Ecology}, - volume = 78, - pages = {272--282}, - url = {https://esajournals.onlinelibrary.wiley.com/doi/abs/10.1890/0012-9658%281997%29078%5b0272%3aotdofc%5d2.0.co%3b2}, - number = 1, - doi = {10.1890/0012-9658(1997)078[0272:otdofc]2.0.co;2}, - eprint = {https://esajournals.onlinelibrary.wiley.com/doi/pdf/10.1890/0012-9658%281997%29078%5b0272%3aotdofc%5d2.0.co%3b2} -} - -@Book{scheffer2004ecology, - title = {Ecology of Shallow Lakes}, - author = {Scheffer, Marten}, - year = 2004, - publisher = {Springer Science \& Business Media} -} - -@Article{scheili2015seasonal, - title = {Seasonal and Spatial Variations of Source and Drinking Water Quality in Small Municipal Systems of Two Canadian Regions}, - author = {A. Scheili and M.j. Rodriguez and R. Sadiq}, - year = 2015, - journal = {Science of the Total Environment}, - volume = 508, - pages = {514--524}, - url = {http://www.sciencedirect.com/science/article/pii/s0048969714016635}, - doi = {10.1016/j.scitotenv.2014.11.069} -} - -@Article{schieberle1997evaluation, - title = {Evaluation of the Character Impact Odorants in Fresh Strawberry Juice by Quantitative Measurements and Sensory Studies on Model Mixtures}, - author = {P. Schieberle* and And T. Hofmann}, - year = 1997, - journal = {Journal of Agricultural and Food Chemistry}, - volume = 45, - pages = {227--232}, - url = {http://dx.doi.org/10.1021/jf960366o}, - number = 1, - doi = {10.1021/jf960366o}, - eprint = {http://dx.doi.org/10.1021/jf960366o} -} - -@Article{schiffman2001quantification, - title = {Quantification of Odors and Odorants From Swine Operations in North Carolina}, - author = {Susan S Schiffman and Jeanette L Bennett and James H Raymer}, - year = 2001, - journal = {Agricultural and Forest Meteorology}, - volume = 108, - pages = {213--240}, - url = {http://www.sciencedirect.com/science/article/pii/s0168192301002398}, - number = 3, - doi = {10.1016/s0168-1923(01)00239-8} -} - -@Book{schindler2008algal, - title = {The Algal Bowl: Overfertilization of the World's Freshwaters and Estuaries}, - author = {Schindler, David W and Vallentyne, John R}, - year = 2008, - publisher = {Earthscan London, Uk} -} - -@Article{schindler2009eutrophication, - title = {Eutrophication: More Nitrogen Data Needed}, - author = {Schindler, Dw and Hecky, Re}, - year = 2009, - journal = {Science}, - volume = 324, - pages = {721--722} -} - -@Article{schmitt1986seasonally, - title = {Seasonally Fluctuating Resources and Temporal Variability of Interspecific Competition}, - author = {Schmitt, Russellj. and Holbrook, Sallyj.}, - year = 1986, - journal = {Oecologia}, - publisher = {Springer-verlag}, - volume = 69, - pages = {1--11}, - url = {http://dx.doi.org/10.1007/bf00399030}, - number = 1, - doi = {10.1007/bf00399030}, - language = {English} -} - -@Article{schneider2011periphyton, - title = {The Periphyton Index of Trophic Status Pit: A New Eutrophication Metric Based on Non-diatomaceous Benthic Algae in Nordic Rivers}, - author = {Schneider, Susannec. and Lindstr?m, Eli-anne}, - year = 2011, - journal = {Hydrobiologia}, - publisher = {Springer Netherlands}, - volume = 665, - pages = {143--155}, - url = {http://dx.doi.org/10.1007/s10750-011-0614-7}, - language = {English}, - doi = {10.1007/s10750-011-0614-7} -} - -@Article{schrader1993geosmin, - title = {Geosmin-producing Species of Streptomyces and Lyngbya From Aquaculture Ponds}, - author = {Schrader, Kevin K and Blevins, Willard T}, - year = 1993, - journal = {Canadian Journal of Microbiology}, - publisher = {Nrc Research Press}, - volume = 39, - pages = {834--840}, - url = {https://www.nrcresearchpress.com/doi/pdf/10.1139/m93-124}, - number = 9, - doi = {10.1139/m93-124} -} - -@Article{schrader2000evaluation, - title = {Evaluation of Ferulic Acid for Controlling the Musty-odor Cyanobacterium, {{\textit{Oscillatoria perornata}}}, in Aquaculture Ponds}, - author = {Kevin K. Schrader and Stephen O. Duke and Susan K. Kingsbury and Craig S. Tucker and Mary V. Duke and Christopher P. Dionigi and David F. Millie and Paul V. Zimba}, - year = 2000, - journal = {Journal of Applied Aquaculture}, - volume = 10, - pages = {1--16}, - url = {http://dx.doi.org/10.1300/j028v10n01_01}, - number = 1, - doi = {10.1300/j028v10n01_01}, - eprint = {http://dx.doi.org/10.1300/j028v10n01_01} -} - -@Article{schrader2003novel, - title = {Novel Derivatives of 9,10-anthraquinone Are Selective Algicides Against the Musty-odor Cyanobacterium {{\textit{Oscillatoria Perornata}}}}, - author = {Schrader, Kevin K. and Nanayakkara, N. P. Dhammika and Tucker, Craig S. and Rimando, Agnes M. and Ganzera, Markus and Schaneberg, Brian T.}, - year = 2003, - journal = {Applied and Environmental Microbiology}, - volume = 69, - pages = {5319--5327}, - url = {http://aem.asm.org/content/69/9/5319.abstract}, - number = 9, - doi = {10.1128/aem.69.9.5319-5327.2003} -} - -@Article{schrader2005cyanobacteria, - title = {Cyanobacteria and Earthy/musty Compounds Found in Commercial Catfish (ictalurus Punctatus) Ponds in the Mississippi Delta and Mississippi–alabama Blackland Prairie}, - author = {Kevin K. Schrader and Margaret E. Dennis}, - year = 2005, - journal = {Water Research}, - volume = 39, - pages = {2807--2814}, - url = {http://www.sciencedirect.com/science/article/pii/s0043135405002162}, - number = 13, - doi = {10.1016/j.watres.2005.04.044} -} - -@Article{schroeder2009factors, - title = {Factors Contributing to Cucumber Odor in A {Northern USA Reservoir}}, - author = {Lauren A. Schroeder and Scott C. Martin and Amulya Poudel}, - year = 2009, - journal = {Lake and Reservoir Management}, - volume = 25, - pages = {323--335}, - url = {http://dx.doi.org/10.1080/07438140903136530}, - number = 3, - doi = {10.1080/07438140903136530}, - eprint = {http://dx.doi.org/10.1080/07438140903136530} -} - -@InCollection{scott2012cyanobacteria, - title = {Cyanobacteria in Freshwater Benthic Environments}, - author = {Scott, J. Thad and Marcarelli, Amy M.}, - year = 2012, - booktitle = {Ecology of Cyanobacteria Ii}, - publisher = {Springer Netherlands}, - pages = {271--289}, - url = {http://dx.doi.org/10.1007/978-94-007-3855-3_9}, - isbn = {978-94-007-3854-6}, - doi = {10.1007/978-94-007-3855-3_9}, - language = {English} -} - -@Article{sedlak2011chlorine, - title = {The Chlorine Dilemma}, - author = {Sedlak, David L. and Von Gunten, Urs}, - year = 2011, - journal = {Science}, - volume = 331, - pages = {42--43}, - url = {http://www.sciencemag.org/content/331/6013/42.short}, - number = 6013, - doi = {10.1126/science.1196397} -} - -@InCollection{sejnohova2012microcystis, - title = {{\textit{Microcystis}}}, - author = {{\u{s}}ejnohov{\'a}, Lenka and Mar{\u{s}}{\'a}lek, Blahoslav}, - year = 2012, - booktitle = {Ecology of Cyanobacteria Ii}, - publisher = {Springer Netherlands}, - pages = {195--228}, - url = {http://dx.doi.org/10.1007/978-94-007-3855-3_7}, - language = {English}, - isbn = {978-94-007-3854-6}, - doi = {10.1007/978-94-007-3855-3_7} -} - -@Article{seligman1992comparison, - title = {A Comparison of 1988-1990 Flavor Profile Analysis Results With Water Conditions in Two {Northern California Reservoirs}}, - author = {Seligman, K. and Enos, Ak and Lai, Hh}, - year = 1992, - journal = {Water Science \& Technology}, - volume = 25, - pages = {19--25}, - url = {http://www.iwaponline.com/wst/02502/wst025020019.htm}, - number = 2 -} - -@Article{sellner2003harmful, - title = {Harmful Algal Blooms: Causes, Impacts and Detection}, - author = {Sellner, Keving. and Doucette, Gregoryj. and Kirkpatrick, Garyj.}, - year = 2003, - journal = {Journal of Industrial Microbiology and Biotechnology}, - publisher = {Springer-verlag}, - volume = 30, - pages = {383--406}, - url = {http://dx.doi.org/10.1007/s10295-003-0074-9}, - number = 7, - doi = {10.1007/s10295-003-0074-9}, - language = {English} -} - -@Article{serizawa2010effects, - title = {Effects of Buoyancy, Transparency and Zooplankton Feeding on Surface Maxima and Deep Maxima: Comprehensive Mathematical Model for Vertical Distribution in Cyanobacterial Biomass}, - author = {Hiroshi Serizawa and Takashi Amemiya and Kiminori Itoh}, - year = 2010, - journal = {Ecological Modelling}, - volume = 221, - pages = {2028--2037}, - url = {http://www.sciencedirect.com/science/article/pii/s0304380010002619}, - number = 17, - doi = {10.1016/j.ecolmodel.2010.05.009} -} - -@Article{seto1996simultaneous, - title = {Simultaneous Operation of the Mevalonate and Non-mevalonate Pathways in the Biosynthesis of Isopentenly Diphosphate in Streptomyces Aeriouvifer}, - author = {Haruo Seto and Hiroyuki Watanabe and Kazuo Furihata}, - year = 1996, - journal = {Tetrahedron Letters}, - volume = 37, - pages = {7979--7982}, - url = {http://www.sciencedirect.com/science/article/pii/004040399601787x}, - number = 44, - doi = {10.1016/0040-4039(96)01787-x} -} - -@Article{seto1998studies, - title = {Studies on the Biosynthesis of Terpenoids Produced by Actinomycetes. Part 4. Formation of Be-40644 by the Mevalonate and Nonmevalonate Pathways}, - author = {Haruo Seto and Nobuyo Orihara and Kazuo Furihata}, - year = 1998, - journal = {Tetrahedron Letters}, - volume = 39, - pages = {9497--9500}, - url = {http://www.sciencedirect.com/science/article/pii/s0040403998021546}, - number = 51, - doi = {10.1016/s0040-4039(98)02154-6} -} - -@Book{shannon1949mathematical, - title = {The Mathematical Theory of Communication}, - author = {Shannon, C. E. and Weaver, W. and Blahut, R. E. and Hajek, B.}, - year = 1949, - publisher = {University of Illinois Press Urbana}, - volume = 117 -} - -@PhDThesis{shao2010sheng, - title = {生物源物质和溶藻菌对铜绿微囊藻抑制作用机理研究}, - author = {邵继海 and 李仁辉}, - school = {中国科学院大学}, - year = 2010 -} - -@Article{shao2014chan, - title = {产嗅藻类对东太湖某地原水中嗅味物质2-{MIB}的贡献}, - author = {劭晨 and 黎雷 and 于水利 and 侯立安 and 杨帆 and 殷祺 and 漆晴}, - year = 2014, - journal = {中国环境科学}, - language = {Zh} -} - -@Article{shapiro1997cues, - title = {Cues That Hippocampal Place Cells Encode: Dynamic and Hierarchical Representation of Local and Distal Stimuli}, - author = {Shapiro, Matthew L and Tanila, Heikki and Eichenbaum, Howard and Others}, - year = 1997, - journal = {Hippocampus}, - volume = 7, - pages = {624--642}, - number = 6 -} - -@Article{sharpley1996determining, - title = {Determining Environmentally Sound Soil Phosphorus Levels}, - author = {Sharpley, Andrew and Daniel, Tc and Sims, Jt and Pote, Dh}, - year = 1996, - journal = {Journal of Soil and Water Conservation}, - publisher = {Soil and Water Conservation Society}, - volume = 51, - pages = {160--166}, - number = 2 -} - -@InCollection{sheath2015introduction, - title = {Chapter 1 - Introduction to the Freshwater Algae}, - author = {Robert G. Sheath and John D. Wehr}, - year = 2015, - booktitle = {Freshwater Algae of North America (second Edition)}, - publisher = {Academic Press}, - pages = {1--11}, - url = {http://www.sciencedirect.com/science/article/pii/b9780123858764000013}, - address = {Boston}, - isbn = {978-0-12-385876-4}, - doi = {10.1016/b978-0-12-385876-4.00001-3} -} - -@InCollection{sheath2015red, - title = {Chapter 5 - Red Algae}, - author = {Robert G. Sheath and Morgan L. Vis}, - year = 2015, - booktitle = {Freshwater Algae of North America (second Edition)}, - publisher = {Academic Press}, - pages = {237--264}, - url = {http://www.sciencedirect.com/science/article/pii/b9780123858764000050}, - address = {Boston}, - isbn = {978-0-12-385876-4}, - doi = {10.1016/b978-0-12-385876-4.00005-0} -} - -@Article{shen2011morphological, - title = {Morphological and Physiological Changes in {{\textit{Microcystis aeruginosa}}} As A Result of Interactions With Heterotrophic Bacteria}, - author = {Shen, Hong and Niu, Yuan and Xie, Ping and Tao, Min and Yang, Xi}, - year = 2011, - journal = {Freshwater Biology}, - publisher = {Blackwell Publishing Ltd}, - volume = 56, - pages = {1065--1080}, - url = {http://dx.doi.org/10.1111/j.1365-2427.2010.02551.x}, - number = 6, - doi = {10.1111/j.1365-2427.2010.02551.x} -} - -@Article{sherr1993preservation, - title = {Preservation and Storage of Samples for Enumeration of Heterotrophic Protists}, - author = {Sherr, Evelyn B and Sherr, Barry F}, - year = 1993, - journal = {Handbook of Methods in Aquatic Microbial Ecology. Lewis Publishers, Boca Raton}, - pages = {207--212} -} - -@Article{sherwood2007universal, - title = {Universal Primers Amplify A 23s Rdna Plastid Marker in Eukaryotic Algae and Cyanobacteria}, - author = {Sherwood, Alison R. and Presting, Gernot G.}, - year = 2007, - journal = {Journal of Phycology}, - publisher = {Blackwell Publishing Ltd}, - volume = 43, - pages = {605--608}, - url = {http://dx.doi.org/10.1111/j.1529-8817.2007.00341.x}, - number = 3, - doi = {10.1111/j.1529-8817.2007.00341.x} -} - -@Article{shinohara2012biogenic, - title = {Biogenic Phosphorus Compounds in Sediment and Suspended Particles in A Shallow Eutrophic Lake: A 31p-nuclear Magnetic Resonance (31p Nmr) Study}, - author = {Shinohara, Ryuichiro and Imai, Akio and Kawasaki, Nobuyuki and Komatsu, Kazuhiro and Kohzu, Ayato and Miura, Shingo and Sano, Tomoharu and Satou, Takayuki and Tomioka, Noriko}, - year = 2012, - journal = {Environmental Science \& Technology}, - volume = 46, - pages = {10572--10578}, - url = {http://pubs.acs.org/doi/abs/10.1021/es301887z}, - number = 19, - doi = {10.1021/es301887z}, - eprint = {http://pubs.acs.org/doi/pdf/10.1021/es301887z} -} - -@Article{shono2008application, - title = {Application of the Tweedie Distribution to Zero-catch Data in {Cpue} Analysis}, - author = {Hiroshi Shono}, - year = 2008, - journal = {Fisheries Research}, - volume = 93, - pages = {154--162}, - url = {http://www.sciencedirect.com/science/article/pii/s0165783608000945}, - number = {1–2}, - doi = {10.1016/j.fishres.2008.03.006} -} - -@Article{shu2016nian, - title = {黏伪鱼腥藻和铜绿微囊藻之间的化感作用研究}, - author = {舒惠琳 and 郑凌凌 and 翁笑艳 and 庄惠如}, - year = 2016, - month = 4, - journal = {福建师范大学学报（自然科学版）}, - volume = 32, - pages = {62--68}, - number = 2 -} - -@InCollection{shubert2015nonmotile, - title = {Chapter 7 - Nonmotile Coccoid and Colonial Green Algae}, - author = {Elliot Shubert and Georg Gärtner}, - year = 2015, - booktitle = {Freshwater Algae of North America (second Edition)}, - publisher = {Academic Press}, - pages = {315--373}, - url = {http://www.sciencedirect.com/science/article/pii/b9780123858764000074}, - address = {Boston}, - isbn = {978-0-12-385876-4}, - doi = {10.1016/b978-0-12-385876-4.00007-4} -} - -@Article{shuter1978size, - title = {Size Dependence of Phosphorus and Nitrogen Subsistence Quotas in Unicellular Microorganisms}, - author = {Shuter, B. J.}, - year = 1978, - journal = {Limnology and Oceanography}, - publisher = {Jstor}, - pages = {1248--1255} -} - -@Article{silvey1950actinomycetes, - title = {Actinomycetes and Common Tastes and Odors}, - author = {Silvey, J K G and Russell, James C and Mccormick, W C}, - year = 1950, - journal = {Journal American Water Works Association} -} - -@Article{silvey1975taste, - title = {The Taste and Odor Producing Aquatic Actinomycetes}, - author = {J. K. G. Silvey and A. W. Roach and David I. Jenkins}, - year = 1975, - journal = {C R C Critical Reviews in Environmental Control}, - volume = 5, - pages = {233--273}, - url = {http://dx.doi.org/10.1080/10643387509381627}, - number = 2, - doi = {10.1080/10643387509381627}, - eprint = {http://dx.doi.org/10.1080/10643387509381627} -} - -@Article{simberloff2013impacts, - title = {Impacts of Biological Invasions: What's What and the Way Forward}, - author = {Daniel Simberloff and Jean-louis Martin and Piero Genovesi and Virginie Maris and David A. Wardle and James Aronson and Franck Courchamp and Bella Galil and Emili García-berthou and Michel Pascal and Petr Pyšek and Ronaldo Sousa and Eric Tabacchi and Montserrat Vilà}, - year = 2013, - journal = {Trends in Ecology \& Evolution}, - volume = 28, - pages = {58--66}, - url = {http://www.sciencedirect.com/science/article/pii/s0169534712001747}, - number = 1, - doi = {10.1016/j.tree.2012.07.013} -} - -@Article{simek2011effect, - title = {The Effect of River Water Circulation on the Distribution and Functioning of Reservoir Microbial Communities As Determined by A Relative Distance Approach}, - author = {{\u{s}}imek, Karel and Comerma, Marta and Garc{\'i}a, Juan-carlos and Nedoma, Ji{\u{r}}{\'i} and Marc{\'e}, Rafael and Armengol, Joan}, - year = 2011, - journal = {Ecosystems}, - publisher = {Springer-verlag}, - volume = 14, - pages = {1--14}, - url = {http://dx.doi.org/10.1007/s10021-010-9388-4}, - language = {English}, - doi = {10.1007/s10021-010-9388-4} -} - -@InCollection{simonoff1996smoothing, - title = {Smoother Univariate Density Estimation}, - author = {Simonoff, Jeffreys.}, - year = 1996, - booktitle = {Smoothing Methods in Statistics}, - publisher = {Springer New York}, - pages = {40--95}, - url = {http://dx.doi.org/10.1007/978-1-4612-4026-6_3}, - isbn = {978-1-4612-8472-7}, - doi = {10.1007/978-1-4612-4026-6_3}, - language = {English} -} - -@Article{sims2012temporal, - title = {Temporal and Spatial Distributions of Ammonia-oxidizing Archaea and Bacteria and Their Ratio As An Indicator of Oligotrophic Conditions in Natural Wetlands}, - author = {Atreyee Sims and John Horton and Shashikanth Gajaraj and Steve Mcintosh and Randall J. Miles and Ryan Mueller and Robert Reed and Zhiqiang Hu}, - year = 2012, - journal = {Water Research}, - volume = 46, - pages = {4121--4129}, - url = {http://www.sciencedirect.com/science/article/pii/s0043135412003132}, - number = 13, - doi = {10.1016/j.watres.2012.05.007} -} - -@Article{singh2009quantitative, - title = {Quantitative and Qualitative Extraction of Rna From A Filamentous Cyanobacterium {{\textit{Anabaena variabilis}}} {PCC} 7937}, - author = {Singh, Shailendra P. and Sinha, Rajeshwar P. and Daiker, Viktor and H{\"a}der, Donat-p.}, - year = 2009, - journal = {Journal of Applied Phycology}, - volume = 22, - pages = {113--116}, - url = {http://dx.doi.org/10.1007/s10811-009-9428-7}, - number = 1, - doi = {10.1007/s10811-009-9428-7} -} - -@Article{singh2010improved, - title = {An Improved Method for Genomic Dna Extraction From Cyanobacteria}, - author = {Singh, Shailendra P. and Rastogi, Rajesh P. and H{\"a}der, Donat-p. and Sinha, Rajeshwar P.}, - year = 2010, - journal = {World Journal of Microbiology and Biotechnology}, - volume = 27, - pages = {1225--1230}, - url = {http://dx.doi.org/10.1007/s11274-010-0571-8}, - number = 5, - doi = {10.1007/s11274-010-0571-8} -} - -@Article{singh2012isolation, - title = {Isolation, Identification and Characterization of Novel Thermotolerant {{\textit{Oscillatoria}}} sp.~n9dm: Change in Pigmentation Profile in Response to Temperature}, - author = {Niraj Kumar Singh and Asha Parmar and Ravi R. Sonani and Datta Madamwar}, - year = 2012, - journal = {Process Biochemistry}, - volume = 47, - pages = {2472--2479}, - url = {http://www.sciencedirect.com/science/article/pii/s1359511312003789}, - number = 12, - doi = {10.1016/j.procbio.2012.10.009} -} - -@InCollection{siver2015synurophyte, - title = {Chapter 14 - Synurophyte Algae}, - author = {Peter A. Siver}, - year = 2015, - booktitle = {Freshwater Algae of North America (second Edition)}, - publisher = {Academic Press}, - pages = {607--651}, - url = {http://www.sciencedirect.com/science/article/pii/b9780123858764000141}, - address = {Boston}, - isbn = {978-0-12-385876-4}, - doi = {10.1016/b978-0-12-385876-4.00014-1} -} - -@Article{sivonen1990effects, - title = {Effects of Light, Temperature, Nitrate, Orthophosphate, and Bacteria on Growth of and Hepatotoxin Production by {{\textit{Oscillatoria agardhii}}} Strains.}, - author = {Sivonen, K}, - year = 1990, - journal = {Applied and Environmental Microbiology}, - volume = 56, - pages = {2658--2666}, - url = {http://aem.asm.org/content/56/9/2658.abstract}, - number = 9 -} - -@Article{sivonen1992isolation, - title = {Isolation and Characterization of A Variety of Microcystins From Seven Strains of the Cyanobacterial Genus {{\textit{Anabaena}}}}, - author = {Sivonen, K and Namikoshi, M and Evans, W R and Carmichael, W W and Sun, F and Rouhiainen, L and Luukkainen, R and Rinehart, K L}, - year = 1992, - journal = {Applied and Environmental Microbiology}, - volume = 58, - pages = {2495--2500}, - url = {http://aem.asm.org/content/58/8/2495.abstract}, - number = 8 -} - -@Article{skjelbred2012high, - title = {A High-throughput Method for Measuring Growth and Loss Rates in Microalgal Cultures}, - author = {Skjelbred, Birger and Edvardsen, Bente and Andersen, Tom}, - year = 2012, - journal = {Journal of Applied Phycology}, - volume = 24, - pages = {1589--1599}, - url = {http://dx.doi.org/10.1007/s10811-012-9819-z}, - number = 6, - doi = {10.1007/s10811-012-9819-z} -} - -@Article{smayda1997harmful, - title = {Harmful Algal Blooms: Their Ecophysiology and General Relevance to Phytoplankton Blooms in the Sea}, - author = {Smayda, T. J.}, - year = 1997, - journal = {Limnology and Oceanography}, - publisher = {Jstor}, - pages = {1137--1153} -} - -@Article{smayda2001community, - title = {Community Assembly in Marine Phytoplankton: Application of Recent Models to Harmful Dinoflagellate Blooms}, - author = {Smayda, Theodore J. and Reynolds, Colin S.}, - year = 2001, - journal = {Journal of Plankton Research}, - volume = 23, - pages = {447--461}, - url = {http://plankt.oxfordjournals.org/content/23/5/447.abstract}, - number = 5, - doi = {10.1093/plankt/23.5.447}, - eprint = {http://plankt.oxfordjournals.org/content/23/5/447.full.pdf+html} -} - -@Article{smestad1998education, - title = {Education and Solar Conversion:: Demonstrating Electron Transfer}, - author = {Greg P. Smestad}, - year = 1998, - journal = {Solar Energy Materials and Solar Cells}, - volume = 55, - pages = {157--178}, - url = {http://www.sciencedirect.com/science/article/pii/s0927024898000567}, - number = {1--2}, - doi = {10.1016/s0927-0248(98)00056-7} -} - -@Article{smith1999eutrophication, - title = {Eutrophication: Impacts of Excess Nutrient Inputs on Freshwater, Marine, and Terrestrial Ecosystems}, - author = {V.h. Smith and G.d. Tilman and J.c. Nekola}, - year = 1999, - journal = {Environmental Pollution}, - volume = 100, - pages = {179--196}, - url = {http://www.sciencedirect.com/science/article/pii/s0269749199000913}, - number = 1, - doi = {10.1016/s0269-7491(99)00091-3} -} - -@Article{smith2002managing, - title = {Managing Taste and Odor Problems in A Eutrophic Drinking Water Reservoir}, - author = {Smith, Val H. and Sieber-denlinger, Jonathan and Denoyelles, Frank and Campbell, Scott and Pan, Shugen and Randtke, Stephen J. and Blain, Gerald T. and Strasser, Vernon A.}, - year = 2002, - journal = {Lake and Reservoir Management}, - volume = 18, - pages = {319--323}, - url = {http://www.tandfonline.com/doi/abs/10.1080/07438140209353938}, - number = 4, - doi = {10.1080/07438140209353938}, - eprint = {http://www.tandfonline.com/doi/pdf/10.1080/07438140209353938} -} - -@Article{smith2008review, - title = {A Review of Cyanobacterial Odorous and Bioactive Metabolites: Impacts and Management Alternatives in Aquaculture}, - author = {Smith, J.l. and Boyer, G.l. and Zimba, P.v.}, - year = 2008, - journal = {Aquaculture}, - publisher = {Elsevier}, - volume = 280, - pages = {5--20}, - url = {http://www.sciencedirect.com/science/article/pii/s0044848608003463}, - number = 1, - doi = {10.1016/j.aquaculture.2008.05.007} -} - -@Article{soballe1987large, - title = {A Large-scale Comparison of Factors Influencing Phytoplankton Abundance in Rivers, Lakes, and Impoundments}, - author = {Søballe, Dm and Kimmel, Bl}, - year = 1987, - journal = {Ecology}, - publisher = {Jstor}, - pages = {1943--1954} -} - -@Article{soberon2009niches, - title = {Niches and Distributional Areas: Concepts, Methods, and Assumptions}, - author = {Sober\'{o}n, Jorge and Nakamura, Miguel}, - year = 2009, - journal = {Proceedings of the National Academy of Sciences}, - volume = 106, - pages = {19644--19650}, - url = {http://www.pnas.org/content/106/supplement_2/19644.abstract}, - number = {Supplement 2}, - doi = {10.1073/pnas.0901637106} -} - -@Article{sobolev2009nutrients, - title = {Nutrients and Light Limitation of Phytoplankton Biomass in A Turbid Southeastern Reservoir: Implications for Water Quality}, - author = {Dmitri Sobolev and Kandis Moore and Ashley L. Morris}, - year = 2009, - journal = {Southeastern Naturalist}, - publisher = {Eagle Hill Institute}, - volume = 8, - pages = {255--266}, - url = {http://www.jstor.org/stable/25599317}, - number = 2 -} - -@Article{sogge2013gene, - title = {Gene Flow, Recombination, and Selection in Cyanobacteria: Population Structure of Geographically Related {{\textit{Planktothrix}}} Freshwater Strains}, - author = {Sogge, Hanne and Rohrlack, Thomas and Rounge, Trine B. and Sønstebø¸,jørn Henrik and Tooming-klunderud, Ave and Kristensen, Tom and Jakobsen, Kjetill S.}, - year = 2013, - journal = {Applied and Environmental Microbiology}, - volume = 79, - pages = {508--515}, - url = {http://aem.asm.org/content/79/2/508.abstract}, - number = 2, - doi = {10.1128/aem.02417-12} -} - -@Article{solic1992separate, - title = {Separate and Combined Effects of Solar Radiation, Temperature, Salinity, and Ph on the Survival of Faecal Coliforms in Seawater}, - author = {Mladen {\u{s}}oli{\'c} and Nada Krstulovi{\'c}}, - year = 1992, - journal = {Marine Pollution Bulletin}, - volume = 24, - pages = {411--416}, - url = {http://www.sciencedirect.com/science/article/pii/0025326x9290503x}, - number = 8, - doi = {10.1016/0025-326x(92)90503-x} -} - -@Article{sommer1986peg, - title = {Peg-model of Seasonal Succession of Planktonic Events in Fresh Waters}, - author = {Sommer, Ulrich and Gliwicz, Z Maciej and Lampert, Winfried and Duncan, Annie}, - year = 1986, - journal = {Archiv Fuer Hydrobiologie Ahybay}, - volume = 106, - number = 4 -} - -@Article{song2004shui, - title = {水体异味及其藻源次生代谢产物研究进展}, - author = {宋, 立荣 and 李, 林 and 陈, 伟 and 甘, 南琴}, - year = 2004, - journal = {水生生物学报}, - pages = {434--439}, - number = 04 -} - -@Article{song2007distribution, - title = {Distribution and Bioaccumulation of Microcystins in Water Columns: A Systematic Investigation Into the Environmental Fate and the Risks Associated With Microcystins in Meiliang Bay, {Lake Taihu}}, - author = {Lirong Song and Wei Chen and Liang Peng and Neng Wan and Nanqin Gan and Xiaoming Zhang}, - year = 2007, - journal = {Water Research}, - volume = 41, - pages = {2853--2864}, - url = {http://www.sciencedirect.com/science/article/pii/s0043135407001121}, - number = 13, - doi = {10.1016/j.watres.2007.02.013} -} - -@Article{song2011loss, - title = {Loss of Seasonal Variability in A Lake Resulting From Copper Sulfate Algaecide Treatment}, - author = {L. Song and T.l. Marsh and T.c. Voice and D.t. Long}, - year = 2011, - journal = {Physics and Chemistry of the Earth, Parts A/b/c}, - volume = 36, - pages = {430--435}, - url = {http://www.sciencedirect.com/science/article/pii/s1474706510000823}, - number = 9, - note = {Science, Technology and Policy for Water Pollution Control At the Watershed Scale: Current Issues and Future Challenges}, - doi = {10.1016/j.pce.2010.04.016} -} - -@PhDThesis{song2016zhong, - title = {中国真枝藻属（蓝藻，念珠藻目）的分类与系统发育研究}, - author = {宋高飞 and 李仁辉}, - school = {中国科学院研究生院}, - year = 2016 -} - -@PhDThesis{song2018zhong, - title = {中国小球藻科的分类及系统发育研究}, - author = {宋会银 and 胡征宇}, - school = {中国科学院大学}, - year = 2018 -} - -@Article{soo2014expanded, - title = {An Expanded Genomic Representation of the Phylum Cyanobacteria}, - author = {Soo, Rochelle M. and Skennerton, Connor T. and Sekiguchi, Yuji and Imelfort, Michael and Paech, Samuel J. and Dennis, Paul G. and Steen, Jason A. and Parks, Donovan H. and Tyson, Gene W. and Hugenholtz, Philip}, - year = 2014, - journal = {Genome Biology and Evolution}, - volume = 6, - pages = {1031--1045}, - url = {http://gbe.oxfordjournals.org/content/6/5/1031.abstract}, - number = 5, - doi = {10.1093/gbe/evu073}, - eprint = {http://gbe.oxfordjournals.org/content/6/5/1031.full.pdf+html} -} - -@Article{soterosantos2008occurrence, - title = {Occurrence and Toxicity of An {{\textit{Anabaena}}} Bloom in A Tropical Reservoir (southeast {Brazil})}, - author = {Rosana Barbosa Sotero-santos and Elisa Garcia Carvalho and Maria Jos{\'e} Dellamano-oliveira and Odete Rocha}, - year = 2008, - journal = {Harmful Algae}, - volume = 7, - pages = {590--598}, - url = {http://www.sciencedirect.com/science/article/pii/s156898830700193x}, - number = 5, - doi = {10.1016/j.hal.2007.12.017} -} - -@Book{sournia1978phytoplankton, - title = {Phytoplankton Manual}, - author = {Sournia, A.}, - year = 1978, - publisher = {Unesco}, - isbn = {92-3-101572-9} -} - -@Article{sousa1979experimental, - title = {Experimental Investigations of Disturbance and Ecological Succession in A Rocky Intertidal Algal Community}, - author = {Sousa, Wayne P.}, - year = 1979, - month = {Sep}, - journal = {Ecological Monographs}, - publisher = {Ecological Society of America}, - volume = 49, - pages = {227--254}, - url = {http://dx.doi.org/10.2307/1942484}, - number = 3, - doi = {10.2307/1942484} -} - -@Article{spears2012long, - title = {Long-term Variation and Regulation of Internal Phosphorus Loading in Loch Leven}, - author = {Spears, B.m. and Carvalho, L. and Perkins, R. and Kirika, A. and Paterson, D.m.}, - year = 2012, - journal = {Hydrobiologia}, - publisher = {Springer Netherlands}, - volume = 681, - pages = {23--33}, - url = {http://dx.doi.org/10.1007/s10750-011-0921-z}, - language = {English}, - doi = {10.1007/s10750-011-0921-z} -} - -@Article{spencer1987regulation, - title = {Regulation of Blue-green Algal Buoyancy and Bloom Formation by Light, Inorganic Nitrogen, $\mathrm{co_2}$, and Trophic Level Interactions}, - author = {Spencer, Craig N. and King, Darrell L.}, - year = 1987, - journal = {Hydrobiologia}, - publisher = {Kluwer Academic Publishers}, - volume = 144, - pages = {183--191}, - url = {http://dx.doi.org/10.1007/bf00014531}, - language = {English}, - doi = {10.1007/bf00014531} -} - -@Article{spiteller2002feeding, - title = {Feeding of [5,5-2h2]-1-desoxy-d-xylulose and [4,4,6,6,6-2h5]-mevalolactone to a Geosmin-producing {{Streptomyces}} sp. and {{Fossombronia pusilla}}}, - author = {Dieter Spiteller and Andreas Jux and Jörn Piel and Wilhelm Boland}, - year = 2002, - journal = {Phytochemistry}, - volume = 61, - pages = {827--834}, - url = {http://www.sciencedirect.com/science/article/pii/s0031942202002820}, - number = 7, - doi = {10.1016/s0031-9422(02)00282-0} -} - -@Article{srinivasan2011treatment, - title = {Treatment of Taste and Odor Causing Compounds 2-methyl Isoborneol and Geosmin in Drinking Water: A Critical Review}, - author = {Rangesh Srinivasan and George A. Sorial}, - year = 2011, - journal = {Journal of Environmental Sciences}, - volume = 23, - pages = {1--13}, - url = {http://www.sciencedirect.com/science/article/pii/s1001074210603671}, - number = 1, - doi = {10.1016/s1001-0742(10)60367-1} -} - -@Article{stahl2003recruitment, - title = {Recruitment of Resting Stages May Induce Blooms of {{\textit{Microcystis}}} At Low {N:P} Ratios}, - author = {St{\aa}hl-delbanco, Annika and Hansson, Lars-anders and Gyllstr{\"o}m, Mikael}, - year = 2003, - journal = {Journal of Plankton Research}, - volume = 25, - pages = {1099--1106}, - url = {http://plankt.oxfordjournals.org/content/25/9/1099.abstract}, - number = 9, - doi = {10.1093/plankt/25.9.1099}, - eprint = {http://plankt.oxfordjournals.org/content/25/9/1099.full.pdf+html} -} - -@InCollection{stal2012cyanobacterial, - title = {Cyanobacterial Mats and Stromatolites}, - author = {Stal, Lucasj.}, - year = 2012, - booktitle = {Ecology of Cyanobacteria Ii}, - publisher = {Springer Netherlands}, - pages = {65--125}, - url = {http://dx.doi.org/10.1007/978-94-007-3855-3_4}, - isbn = {978-94-007-3854-6}, - doi = {10.1007/978-94-007-3855-3_4}, - language = {English} -} - -@Article{starrfelt2013estimating, - title = {Estimating Trophic Levels and Trophic Magnification Factors Using Bayesian Inference}, - author = {Starrfelt, Jostein and Borg{\oa}, Katrine and Ruus, Anders and Fjeld, Eirik}, - year = 2013, - journal = {Environmental Science \& Technology}, - volume = 0, - pages = {Null}, - url = {http://pubs.acs.org/doi/abs/10.1021/es401231e}, - number = 0, - doi = {10.1021/es401231e}, - eprint = {http://pubs.acs.org/doi/pdf/10.1021/es401231e} -} - -@Article{stefan1983model, - title = {Model of Light Penetration in A Turbid Lake}, - author = {Stefan, Heinz G. and Cardoni, John J. and Schiebe, Frank R. and Cooper, Charles M.}, - year = 1983, - journal = {Water Resources Research}, - volume = 19, - pages = {109--120}, - url = {https://agupubs.onlinelibrary.wiley.com/doi/abs/10.1029/wr019i001p00109}, - number = 1, - doi = {10.1029/wr019i001p00109}, - eprint = {https://agupubs.onlinelibrary.wiley.com/doi/pdf/10.1029/wr019i001p00109} -} - -@Article{steinbuck2009observations, - title = {Observations of Turbulent Mixing in A Phytoplankton Thin Layer: Implications for Formation, Maintenance, and Breakdown}, - author = {Steinbuck, Jonah V. and Stacey, Mark T. and Mcmanus, Margaret A. and Cheriton, Olivia M. and Ryan, John P.}, - year = 2009, - journal = {Limnology and Oceanography}, - volume = 54, - pages = {1353--1368}, - url = {https://aslopubs.onlinelibrary.wiley.com/doi/abs/10.4319/lo.2009.54.4.1353}, - number = 4, - doi = {10.4319/lo.2009.54.4.1353}, - eprint = {https://aslopubs.onlinelibrary.wiley.com/doi/pdf/10.4319/lo.2009.54.4.1353} -} - -@Article{steindler200516s, - title = {16s Rrna Phylogeny of Sponge-associated Cyanobacteria}, - author = {Steindler, Laura and Huchon, Doroth{\'e}e and Avni, Adi and Ilan, Micha}, - year = 2005, - journal = {Applied and Environmental Microbiology}, - volume = 71, - pages = {4127--4131}, - url = {http://aem.asm.org/content/71/7/4127.abstract}, - number = 7, - doi = {10.1128/aem.71.7.4127-4131.2005} -} - -@Article{steinman2014influence, - title = {Influence of Water-level Fluctuation Duration and Magnitude on Sediment–water Nutrient Exchange in Coastal Wetlands}, - author = {Steinman, Aland. and Ogdahl, Marye. and Weinert, Maggie and Uzarski, Donaldg.}, - year = 2014, - journal = {Aquatic Ecology}, - publisher = {Springer Netherlands}, - volume = 48, - pages = {143--159}, - url = {http://dx.doi.org/10.1007/s10452-014-9472-5}, - number = 2, - doi = {10.1007/s10452-014-9472-5}, - language = {English} -} - -@Article{stepanauskas2003covariance, - title = {Covariance of Bacterioplankton Composition and Environmental Variables in A Temperate Delta System}, - author = {Stepanauskas, Ramunas and Moran, Mary Ann and Bergamaschi, Brian A. and Hollibaugh, James T.}, - year = 2003, - journal = {Aquatic Microbial Ecology}, - volume = 31, - pages = {85--98}, - url = {http://www.int-res.com/abstracts/ame/v31/n1/p85-98/}, - number = 1, - doi = {10.3354/ame031085} -} - -@Article{sterner1989resource, - title = {Resource Competition During Seasonal Succession Toward Dominance by Cyanobacteria}, - author = {Sterner, Robert W.}, - year = 1989, - journal = {Ecology}, - volume = 70, - pages = {229--245}, - url = {https://esajournals.onlinelibrary.wiley.com/doi/abs/10.2307/1938429}, - number = 1, - doi = {10.2307/1938429}, - eprint = {https://esajournals.onlinelibrary.wiley.com/doi/pdf/10.2307/1938429} -} - -@Article{steven2012pyrosequencing, - title = {Pyrosequencing of Plastid 23s Rrna Genes Reveals Diverse and Dynamic Cyanobacterial and Algal Populations in Two Eutrophic Lakes}, - author = {Steven, Blaire and Mccann, Sage and Ward, Naomi L.}, - year = 2012, - journal = {Fems Microbiology Ecology}, - publisher = {The Oxford University Press}, - volume = 82, - pages = {607--615}, - url = {http://femsec.oxfordjournals.org/content/82/3/607}, - number = 3, - doi = {10.1111/j.1574-6941.2012.01429.x}, - eprint = {http://femsec.oxfordjournals.org/content/82/3/607.full.pdf} -} - -@InCollection{stevenson2015use, - title = {Chapter 21 - Use of Algae in Ecological Assessments}, - author = {R.jan Stevenson and John P. Smol}, - year = 2015, - booktitle = {Freshwater Algae of North America (second Edition)}, - publisher = {Academic Press}, - pages = {921--962}, - url = {http://www.sciencedirect.com/science/article/pii/b9780123858764000219}, - address = {Boston}, - isbn = {978-0-12-385876-4}, - doi = {10.1016/b978-0-12-385876-4.00021-9} -} - -@Article{sthapit2008spatial, - title = {Spatial and Temporal Variation in Phytoplankton Community Structure in A Southeastern {U.S.} Reservoir Determined by Hplc and Light Microscopy}, - author = {Sthapit, Engela and Ochs, Clifforda. and Zimba, Paulv.}, - year = 2008, - journal = {Hydrobiologia}, - publisher = {Springer Netherlands}, - volume = 600, - pages = {215--228}, - url = {http://dx.doi.org/10.1007/s10750-007-9234-7}, - language = {English}, - doi = {10.1007/s10750-007-9234-7} -} - -@Article{stige2009climatic, - title = {Climatic Forcing of Zooplankton Dynamics Is Stronger During Low Densities of Planktivorous Fish}, - author = {Stige, Leif Chr. and Lajus, Dmitry L. and Chan, Kung-sik and Dalpadado, Padmini and Basedow, Sünnje L. and Berchenko, Igor and Stenseth, Nils Chr.}, - year = 2009, - journal = {Limnology and Oceanography}, - volume = 54, - pages = {1025--1036}, - url = {http://dx.doi.org/10.4319/lo.2009.54.4.1025}, - number = 4, - doi = {10.4319/lo.2009.54.4.1025} -} - -@Article{stomp2004adaptive, - title = {Adaptive Divergence in Pigment Composition Promotes Phytoplankton Biodiversity}, - author = {Stomp, Maayke and Huisman, Jef and De Jongh, Floris and Veraart, Annelies J. and {Al}, Et}, - year = 2004, - month = nov, - journal = {Nature; London}, - volume = 432, - pages = {104--7}, - copyright = {Copyright Macmillan Journals Ltd. Nov 4, 2004}, - language = {English}, - number = 7013 -} - -@Article{stomp2007colorful, - title = {Colorful Niches of Phototrophic Microorganisms Shaped by Vibrations of the Water Molecule}, - author = {Stomp, Maayke and Huisman, Jef and Stal, Lucas J. and Matthijs, Hans C. P.}, - year = 2007, - month = {Jul}, - journal = {The Isme Journal}, - publisher = {International Society for Microbial Ecology}, - volume = 1, - pages = 271, - url = {https://doi.org/10.1038/ismej.2007.59}, - note = {Winogradsky Review}, - doi = {10.1038/ismej.2007.59} -} - -@Article{stomp2007colorfulel, - title = {Colourful Coexistence of Red and Green Picocyanobacteria in Lakes and Seas}, - author = {Stomp, Maayke and Huisman, Jef and Vörös, Lajos and Pick, Frances R. and Laamanen, Maria and Haverkamp, Thomas and Stal, Lucas J.}, - year = 2007, - journal = {Ecology Letters}, - volume = 10, - pages = {290--298}, - url = {https://onlinelibrary.wiley.com/doi/abs/10.1111/j.1461-0248.2007.01026.x}, - number = 4, - doi = {10.1111/j.1461-0248.2007.01026.x}, - eprint = {https://onlinelibrary.wiley.com/doi/pdf/10.1111/j.1461-0248.2007.01026.x} -} - -@Article{stomp2011large, - title = {Large-scale Biodiversity Patterns in Freshwater Phytoplankton}, - author = {Stomp, Maayke and Huisman, Jef and Mittelbach, Gary G and Litchman, Elena and Klausmeier, Christopher A}, - year = 2011, - journal = {Ecology}, - publisher = {Eco Soc America}, - volume = 92, - pages = {2096--2107}, - number = 11 -} - -@Article{stone2006three, - title = {Three Gorges Dam: Into the Unknown}, - author = {Stone, Richard}, - year = 2008, - journal = {Science}, - volume = 321, - pages = {628--632}, - url = {http://www.sciencemag.org/content/321/5889/628.short}, - number = 5889, - doi = {10.1126/science.321.5889.628} -} - -@Article{strunecky2017revision, - title = {A Revision of the Genus Geitlerinema and A Description of the Genus Anagnostidinema Gen. Nov. (oscillatoriophycidae, Cyanobacteria)}, - author = {Strunecky, Otakar and Bohunicka, Marketa and Johansen, R. Jeffrey and Capkova, Katerina and Raabova, Lenka and Dvorak, Petr and Komarek, Jiri}, - year = 2017, - journal = {Fottea}, - volume = 17, - pages = {114--126}, - url = {https://fottea.czechphycology.cz/artkey/fot-201701-0010.php}, - number = 1, - doi = {10.5507/fot.2016.025} -} - -@Book{su2013algal, - title = {Algal Growth Dynamics in Drinking Water Reservoir and the Driving Force}, - author = {Ming Su}, - year = 2013, - publisher = {University of Chinese Academy of Sciences}, - volume = 2013 -} - -@Article{su2013establishment, - title = {Establishment of Quantitative PCR Methods for the Quantification of Geosmin-producing Potential and {{\textit{Anabaena}}} sp. in Freshwater Systems}, - author = {Ming Su and Virginie Gaget and Steven Giglio and Michael Burch and Wei An and Min Yang}, - year = 2013, - journal = {Water Research}, - volume = 47, - pages = {3444--3454}, - url = {http://www.sciencedirect.com/science/article/pii/s0043135413002674}, - number = 10, - doi = {10.1016/j.watres.2013.03.043}, - other = {author1} -} - -@Article{qu2014importance, - title = {Importance of Underwater Light Field in Selecting Phytoplankton Morphology in A Eutrophic Reservoir}, - author = {Su, Ming and An, Wei and Yu, Jianwei and Pan, Shenling and Yang, Min}, - year = 2014, - journal = {Hydrobiologia}, - publisher = {Springer Netherlands}, - volume = 724, - pages = {203--216}, - url = {http://dx.doi.org/10.1007/s10750-013-1734-z}, - doi = {10.1007/s10750-013-1734-z}, - number = 1, - language = {English} -} - -@Article{su2014spatial, - title = {Spatial and Temporal Variations of Two Cyanobacteria in the Mesotrophic {Miyun Reservoir}, {China}}, - author = {Ming Su and Jianwei Yu and Shenling Pan and Wei An and Min Yang}, - year = 2014, - journal = {Journal of Environmental Sciences}, - volume = 26, - pages = {289--298}, - url = {http://www.sciencedirect.com/science/article/pii/s1001074213604337}, - number = 2, - doi = {10.1016/s1001-0742(13)60433-7}, - other = {author1} -} - -@Article{su2014importance, - title = {Importance of underwater light field in selecting phytoplankton morphology in a eutrophic reservoir}, - author = {Su, Ming and An, Wei and Yu, Jianwei and Pan, Shenling and Yang, Min}, - year = 2014, - month = {Feb}, - journal = {Hydrobiologia}, - volume = 724, - pages = {203--216}, - url = {https://doi.org/10.1007/s10750-013-1734-z}, - number = 1, - doi = {10.1007/s10750-013-1734-z} -} - -@Article{su2015mib, - title = {{MIB}-producing Cyanobacteria ({{\textit{Planktothrix}}} sp.) in A Drinking Water Reservoir: Distribution and Odor Producing Potential}, - author = {Ming Su and Jianwei Yu and Junzhi Zhang and Hui Chen and Wei An and Rolf D. Vogt and Tom Andersen and Dongmin Jia and Jingshi Wang and Min Yang}, - year = 2015, - journal = {Water Research}, - volume = 68, - pages = {444--453}, - url = {http://www.sciencedirect.com/science/article/pii/s004313541400668x}, - doi = {10.1016/j.watres.2014.09.038}, - language = {English}, - other = {author1} -} - -@PhDThesis{su2015study, - title = {Study of Odor-producing {{\textit{Planktothrix}}} sp.~in {Miyun Reservoir}, Regarding the Ecological Niche Identification, Regulation and Control Strategy}, - author = {Ming Su}, - year = 2015, - school = {Research Center for Eco-environmental Sciences, Chinese Academy of Sciences}, - volume = 2015 -} - -@Article{su2017reducing, - title = {Reducing Production of Taste and Odor by Deep-living Cyanobacteria in Drinking Water Reservoirs by Regulation of Water Level}, - author = {Ming Su and Dongmin Jia and Jianwei Yu and Rolf D. Vogt and Jingshi Wang and Wei An and Min Yang}, - year = 2017, - journal = {Science of the Total Environment}, - volume = 574, - pages = {1477--1483}, - url = {http://www.sciencedirect.com/science/article/pii/s0048969716318356}, - doi = {10.1016/j.scitotenv.2016.08.134}, - other = {author1} -} - -@Article{su2019succession, - title = {Succession and Interaction of Surface and Subsurface Cyanobacterial Blooms in Oligotrophic/mesotrophic Reservoirs: A Case Study in {{Miyun Reservoir}}}, - author = {Ming Su and Tom Andersen and Michael Burch and Zeyu Jia and Wei An and Jianwei Yu and Min Yang}, - year = 2019, - journal = {Science of the Total Environment}, - volume = 649, - pages = {1553--1562}, - url = {http://www.sciencedirect.com/science/article/pii/s0048969718332789}, - doi = {J.scitotenv.2018.08.307}, - other = {author1} -} - -@Article{suda2002taxonomic, - title = {Taxonomic Revision of Water-bloom-forming Species of Oscillatorioid Cyanobacteria.}, - author = {Suda, Shoichiro and Watanabe, Makoto M and Otsuka, Shigeto and Mahakahant, Aparat and Yongmanitchai, Wichien and Nopartnaraporn, Napavarn and Liu, Yongding and Day, John G}, - year = 2002, - journal = {International Journal of Systematic and Evolutionary Microbiology}, - volume = 52, - pages = {1577--95}, - url = {http://ijs.sgmjournals.org/content/52/5/1577.abstract}, - number = 5, - doi = {10.1099/ijs.0.01834-0}, - eprint = {http://ijs.sgmjournals.org/content/52/5/1577.full.pdf+html} -} - -@Article{suffet1996awwa, - title = {{{AWWA}} Taste and Odor Survey}, - author = {Suffet, I. H. (Mel) and Corado, Ana and Chou, David and McGuire, Michael J. and Butterworth, Steve}, - year = 1996, - journal = {Journal - American Water Works Association}, - volume = 88, - pages = {168--180}, - language = {En}, - number = 4, - doi = {10.1002/j.1551-8833.1996.tb06542.x} -} - -@Article{suffet1999drinking, - title = {The Drinking Water Taste and Odor Wheel for the Millennium: Beyond Geosmin and 2-methylisoborneol}, - author = {I.h. (mel) Suffet and Djanette Khiari and Auguste Bruchet}, - year = 1999, - journal = {Water Science and Technology}, - volume = 40, - pages = {1--13}, - url = {http://www.sciencedirect.com/science/article/pii/s0273122399005314}, - number = 6, - doi = {10.1016/s0273-1223(99)00531-4} -} - -@Article{sugiura1986musty, - title = {Musty Odor From Blue-green Alga, Phormidium Tenue in {Lake Kasumigaura}}, - author = {Sugiura, N. and Yagi, O. and Sudo, R.}, - year = 1986, - journal = {Environmental Technology}, - publisher = {Taylor \& Francis}, - volume = 7, - pages = {77--86}, - url = {http://www.tandfonline.com/doi/abs/10.1080/09593338609384393}, - number = {1-12}, - doi = {10.1080/09593338609384393}, - eprint = {http://www.tandfonline.com/doi/pdf/10.1080/09593338609384393} -} - -@Article{sugiura1997grazing, - title = {Grazing Characteristics of Musty-odor-compound-producing {{\textit{Phormidium Tenue}}} by A Microflagellate, {{\textit{Monas Guttula}}}}, - author = {Sugiura, N. and Nishimura, O. and Inamori, Y. and Ouchiyama, T. and Sudo, R.}, - year = 1997, - journal = {Water Research}, - publisher = {Elsevier}, - volume = 31, - pages = {2792--2796}, - url = {http://www.sciencedirect.com/science/article/pii/s0043135497001152}, - number = 11, - doi = {10.1016/s0043-1354(97)00115-2} -} - -@Article{sugiura1998significance, - title = {Significance of Attached Cyanobacteria Relevant to the Occurrence of Musty Odor in {Lake Kasumigaura}}, - author = {Norio Sugiura and Norio Iwami and Yuhei Inamori and Osamu Nishimura and Ryuichi Sudo}, - year = 1998, - journal = {Water Research}, - volume = 32, - pages = {3549--3554}, - url = {http://www.sciencedirect.com/science/article/pii/s0043135498001535}, - number = 12, - doi = {10.1016/s0043-1354(98)00153-5} -} - -@Article{sugiura2000causative, - title = {Causative Microorganisms for Musty Odor Occurrence in the Eutrophic Lake Kasumigaura}, - author = {Sugiura, Norio and Nakano, Kazunori}, - year = 2000, - journal = {Hydrobiologia}, - publisher = {Kluwer Academic Publishers}, - volume = 434, - pages = {145--150}, - url = {http://dx.doi.org/10.1023/a%3a1004000511610}, - number = {1-3}, - doi = {10.1023/a:1004000511610}, - language = {English} -} - -@Article{sugiura2004assessment, - title = {Assessment for the Complicated Occurrence of Nuisance Odours From Phytoplankton and Environmental Factors in A Eutrophic Lake}, - author = {Sugiura, Norio and Utsumi, Motoo and Wei, Bin and Iwami, Norio and Okano, Kunihiro and Kawauchi, Yukio and Maekawa, Takaaki}, - year = 2004, - journal = {Lakes \& Reservoirs: Research \& Management}, - publisher = {Blackwell Science, Ltd}, - volume = 9, - pages = {195--201}, - url = {http://dx.doi.org/10.1111/j.1440-1770.2004.00246.x}, - number = {3-4}, - doi = {10.1111/j.1440-1770.2004.00246.x} -} - -@Article{sun2012large, - title = {Large-scale Field Evidence on the Enhancement of Small-sized Cladocerans by {{\textit{Microcystis}}} Blooms in {Lake Taihu}, {China}}, - author = {Sun, Xiaoxue and Tao, Min and Qin, Boqiang and Qi, Min and Niu, Yuan and Zhang, Jing and Ma, Zhimei and Xie, Ping}, - year = 2012, - journal = {Journal of Plankton Research}, - publisher = {Oxford Univ Press}, - volume = 34, - pages = {853--863}, - number = 10 -} - -@Article{sun2013identification, - title = {Identification of Causative Compounds and Microorganisms for Musty Odor Occurrence in the {Huangpu River}, {China}}, - author = {Daolin Sun and Jianwei Yu and Wei An and Min Yang and Guoguang Chen and Shujun Zhang}, - year = 2013, - journal = {Journal of Environmental Sciences}, - volume = 25, - pages = {460--465}, - url = {http://www.sciencedirect.com/science/article/pii/s1001074212600126}, - number = 3, - doi = {10.1016/s1001-0742(12)60012-6} -} - -@Article{sun2014occurrence, - title = {Occurrence of Odor Problems in Drinking Water of Major Cities Across {China}}, - author = {Sun, Daolin and Yu, Jianwei and Yang, Min and An, Wei and Zhao, Yunyun and Lu, Ning and Yuan, Shengguang and Zhang, Dongqing}, - year = 2014, - journal = {Frontiers of Environmental Science \& Engineering}, - publisher = {Higher Education Press}, - volume = 8, - pages = {411--416}, - url = {http://dx.doi.org/10.1007/s11783-013-0577-1}, - number = 3, - doi = {10.1007/s11783-013-0577-1}, - language = {English} -} - -@Article{sun2014po, - title = {破坏水库水温分层系统的能量效率估算:以金盆水库为例}, - author = {孙昕 and 叶丽丽 and 黄廷林 and 刘伟}, - year = 2014, - journal = {中国环境科学}, - volume = 34, - pages = {2781--2787}, - number = 11, - language = {Zh} -} - -@Article{suurnakki2015identification, - title = {Identification of Geosmin and 2-methylisoborneol in Cyanobacteria and Molecular Detection Methods for the Producers of These Compounds}, - author = {Suvi Suurn{\"a}kki and Gonzalo V. Gomez-saez and Anne Rantala-ylinen and Jouni Jokela and David P. Fewer and Kaarina Sivonen}, - year = 2015, - journal = {Water Research}, - volume = 68, - pages = {56--66}, - url = {http://www.sciencedirect.com/science/article/pii/s0043135414006678}, - number = 0, - doi = {10.1016/j.watres.2014.09.037} -} - -@Article{suzuki1996bias, - title = {Bias Caused by Template Annealing in the Amplification of Mixtures of {16s Rrna} Genes by {PCR}}, - author = {Suzuki, M T and Giovannoni, S J}, - year = 1996, - journal = {Applied and Environmental Microbiology}, - volume = 62, - pages = {625--630}, - url = {http://aem.asm.org/content/62/2/625.abstract}, - number = 2 -} - -@Article{svrcek2004cyanobacteria, - title = {Cyanobacteria Toxins and the Current State of Knowledge on Water Treatment Options: A Review}, - author = {Svrcek, Clark and Smith, Daniel W}, - year = 2004, - journal = {Journal of Environmental Engineering and Science}, - publisher = {Nrc Research Press}, - volume = 3, - pages = {155--185}, - number = 3 -} - -@Article{tabachek1976isolation, - title = {Isolation and Identification of Blue-green Algae Producing Muddy Odor Metabolites, Geosmin, and 2-methylisoborneol, in Saline Lakes in {Manitoba}}, - author = {Tabachek, Jo-anne L. and Yurkowski, M.}, - year = 1976, - journal = {Journal of the Fisheries Research Board of Canada}, - volume = 33, - pages = {25--35}, - url = {https://doi.org/10.1139/f76-004}, - number = 1, - doi = {10.1139/f76-004}, - eprint = {https://doi.org/10.1139/f76-004} -} - -@Article{tacs2010seasonal, - title = {Seasonal Dynamics and Biomass of Mixotrophic Flagellate Dinobryon Sertularia Ehrenberg (chrysophyceae) in Derbent Reservoir (samsun, Turkey)}, - author = {Ta{\c{s}}, Beyhan and G{\"o}nülol, Arif and Ta{\c{s}}, Erol}, - year = 2010, - journal = {Turkish Journal of Fisheries and Aquatic Sciences}, - volume = 10, - number = 3 -} - -@Article{taguchi1976relationship, - title = {Relationship Between Photosynthesis and Cell Size of Marine Diatoms}, - author = {Taguchi, Satoru}, - year = 1976, - journal = {Journal of Phycology}, - publisher = {Blackwell Science Inc}, - volume = 12, - pages = {185--189}, - url = {http://dx.doi.org/10.1111/j.1529-8817.1976.tb00499.x}, - number = 2, - doi = {10.1111/j.1529-8817.1976.tb00499.x} -} - -@Article{takamura1985photosynthesis, - title = {Photosynthesis and Primary Production of {\textit{Microcystis aeruginosa Kü}tz.} in {Lake Kasumigaura}}, - author = {Takamura, Noriko and Iwakuma, Toshio and Yasuno, Masayuki}, - year = 1985, - journal = {Journal of Plankton Research}, - volume = 7, - pages = {303--312}, - url = {http://plankt.oxfordjournals.org/content/7/3/303.abstract}, - number = 3, - doi = {10.1093/plankt/7.3.303}, - eprint = {http://plankt.oxfordjournals.org/content/7/3/303.full.pdf+html} -} - -@Article{talling1965photosynthetic, - title = {The Photosynthetic Activity of Phytoplankton in East African Lakes}, - author = {Talling, J. F.}, - year = 1965, - journal = {Internationale Revue Der Gesamten Hydrobiologie Und Hydrographie}, - publisher = {Akademie Verlag, Berlin}, - volume = 50, - pages = {1--32}, - url = {http://dx.doi.org/10.1002/iroh.19650500102}, - number = 1, - doi = {10.1002/iroh.19650500102} -} - -@Article{talling1976depletion, - title = {The Depletion of Carbon Dioxide From Lake Water by Phytoplankton}, - author = {Talling, Jf}, - year = 1976, - journal = {The Journal of Ecology}, - publisher = {Jstor}, - pages = {79--121} -} - -@Article{tan2009sheng, - title = {升温过程对藻类复苏和群落演替的影响}, - author = {谭啸 and 孔繁翔 and 于洋等}, - year = 2009, - journal = {中国环境科学}, - volume = 29, - pages = {578--582}, - number = 06, - language = {Zh} -} - -@MastersThesis{tan2012wu, - title = {武汉东湖蓝藻分子多样性和分子监测研究}, - author = {谭文华 and 李仁辉}, - school = {中国科学院研究生院}, - year = 2012 -} - -@Article{tanabe2019light, - title = {Light Quality Determines Primary Production in Nutrient-poor Small Lakes}, - author = {Tanabe, Yukiko and Hori, Makoto and Mizuno, Akiko N. and Osono, Takashi and Uchida, Masaki and Kudoh, Sakae and Yamamuro, Masumi}, - year = 2019, - month = {Mar}, - journal = {Scientific Reports}, - volume = 9, - pages = 4639, - url = {https://doi.org/10.1038/s41598-019-41003-9}, - number = 1, - doi = {10.1038/s41598-019-41003-9} -} - -@Article{tang2019cyanobacteria, - title = {Cyanobacteria Bloom Prevention and Control and Salvage Disposal Integrated Management System}, - author = {Tang, Yuming and Liang, Hong and Zhao, Yi and Seng, Bingfeng}, - year = 2019, - journal = {E3s Web Conf.}, - volume = 118, - pages = 04033, - url = {https://doi.org/10.1051/e3sconf/201911804033}, - doi = {10.1051/e3sconf/201911804033} -} - -@Article{tao2012use, - title = {Use of A Generalized Additive Model to Investigate Key Abiotic Factors Affecting Microcystin Cellular Quotas in Heavy Bloom Areas of {Lake Taihu}}, - author = {Tao, Min and Xie, Ping and Chen, Jun and Qin, Boqiang and Zhang, Dawen and Niu, Yuan and Zhang, Meng and Wang, Qing and Wu, Laiyan}, - year = 2012, - month = 02, - journal = {Plos One}, - publisher = {Public Library of Science}, - volume = 7, - pages = {E32020}, - url = {http://dx.doi.org/10.1371%2fjournal.pone.0032020}, - number = 2, - doi = {10.1371/journal.pone.0032020} -} - -@Article{tarangkoon2010spatial, - title = {Spatial Distribution of Symbiont-bearing Dinoflagellates in the Indian Ocean in Relation to Oceanographic Regimes}, - author = {Tarangkoon, Woraporn and Hansen, Gert and Hansen, Per Juel}, - type = {{article}}, - year = 2010, - journal = {{aquatic Microbial Ecology}}, - publisher = {{inter-research}}, - volume = {{58}}, - pages = {{197--213}}, - language = {{english}}, - number = {{2}}, - doi = {{10.3354/ame01356}}, - author-email = {{pjhansen@bio.ku.dk}}, - doc-delivery-number = {{553nf}}, - journal-iso = {{aquat. Microb. Ecol.}}, - number-of-cited-references = {{49}}, - researcherid-numbers = {{hansen, Per Juel/e-9969-2011}} -} - -@Article{tascheri2010statistical, - title = {Statistical Models to Standardize Catch Rates in the Multi-species Trawl Fishery for {{\textit{Patagonian Grenadier}}} ({\textit{Macruronus Magellanicus}}) Off {Southern Chile}}, - author = {R. Tascheri and J.c. Saavedra-nievas and R. Roa-ureta}, - year = 2010, - journal = {Fisheries Research}, - volume = 105, - pages = {200--214}, - url = {http://www.sciencedirect.com/science/article/pii/s016578361000127x}, - number = 3, - doi = {10.1016/j.fishres.2010.05.010} -} - -@PhDThesis{taylor1971zooplankton, - title = {Zooplankton Ecology of A Great Plains Reservoir}, - author = {Taylor, Melvin Wayne}, - school = {Kansas State University}, - year = 1971 -} - -@Article{te2017genomics, - title = {Genomics Insights Into Production of 2-methylisoborneol and A Putative Cyanobactin by {{\textit{Planktothricoides}}} sp. {sr001}}, - author = {Te, Shu Harn and Tan, Boon Fei and Boo, Chek Yin and Thompson, Janelle Renee and Gin, Karina Yew-hoong}, - year = 2017, - journal = {Standards in Genomic Sciences}, - publisher = {Biomed Central}, - volume = 12, - pages = 35, - url = {https://standardsingenomics.biomedcentral.com/articles/10.1186/s40793-017-0247-1}, - number = 1 -} - -@Article{tellez2001volatile, - title = {Volatile Components of the Cyanobacterium {{\textit{Oscillatoria Perornata}}} (skuja)}, - author = {Mario R. Tellez,* and Kevin K. Schrader, and And Mozaina Kobaisy}, - year = 2001, - journal = {Journal of Agricultural and Food Chemistry}, - volume = 49, - pages = {5989--5992}, - url = {http://dx.doi.org/10.1021/jf010722p}, - number = 12, - doi = {10.1021/jf010722p}, - note = {Pmid: 11743797}, - eprint = {http://dx.doi.org/10.1021/jf010722p} -} - -@Article{tezanos2010ecophysiological, - title = {Eco-physiological Responses of Nitrogen-fixing Cyanobacteria to Light}, - author = {Tezanos Pinto, Paula and Litchman, Elena}, - year = 2010, - journal = {Hydrobiologia}, - publisher = {Springer Netherlands}, - volume = 639, - pages = {63--68}, - url = {http://dx.doi.org/10.1007/s10750-009-0014-4}, - language = {English}, - doi = {10.1007/s10750-009-0014-4} -} - -@Article{thimijan1983photometric, - title = {Photometric, Radiometric, and Quantum Light Units of Measure: A Review of Procedures for Interconversion}, - author = {Thimijan, Richard W and Heins, Royal D}, - year = 1983, - journal = {Hortscience}, - publisher = {Alexandria}, - volume = 18, - pages = {818--822}, - number = 6 -} - -@Book{thornton1990reservoir, - title = {Reservoir Limnology: Ecological Perspectives}, - author = {Thornton, Kent W and Kimmel, Bruce L and Payne, Forrest E}, - year = 1990, - publisher = {Wiley-interscience} -} - -@Article{tianheng2010effect, - title = {Effect of Climate, Hydrological and Ecological Processes on Yanghe Reservoir's Eutrophication}, - author = {Gao, Tianheng and Qian, Xin and Chu, Zhaosheng and Wang, Sheng and Wu, Jun and Chuai, Xiaoming and Yang, Liuyan}, - year = 2010, - journal = {Journal of Hydroecology (in Chinese)}, - volume = 3 -} - -@Article{tillett2000structural, - title = {Structural Organization of Microcystin Biosynthesis in {{\textit{Microcystis~aeruginosa}}} {PCC7806}: An Integrated Peptide-polyketide Synthetase System}, - author = {Daniel Tillett and Elke Dittmann and Marcel Erhard and Hans Von D{\"o}hren and Thomas B{\"o}rner and Brett A Neilan}, - year = 2000, - journal = {Chemistry \& Biology}, - volume = 7, - pages = {753--764}, - url = {http://www.sciencedirect.com/science/article/pii/s1074552100000211}, - number = 10, - doi = {10.1016/s1074-5521(00)00021-1} -} - -@Article{tillett2000xanthogenate, - title = {Xanthogenate Nucleic Acid Isolation From Cultured and Environmental Cyanobacteria}, - author = {Tillett, Daniel and Neilan, Brett A.}, - year = 2000, - journal = {Journal of Phycology}, - publisher = {Blackwell Science Inc}, - volume = 36, - pages = {251--258}, - url = {http://dx.doi.org/10.1046/j.1529-8817.2000.99079.x}, - number = 1, - doi = {10.1046/j.1529-8817.2000.99079.x} -} - -@Article{tilman1982phytoplankton, - title = {Phytoplankton Community Ecology: the Role of Limiting Nutrients}, - author = {Tilman, David and Kilham, Suan S. and Kilham, Peter}, - year = 1982, - journal = {Annual Review of Ecology and Systematics}, - publisher = {Jstor}, - volume = 13, - pages = {349--372}, - doi = {10.1146/annurev.es.13.110182.002025} -} - -@Article{tilman1984invasions, - title = {Invasions of Equilibria: Tests of Resource Competition Using Two Species of Algae}, - author = {Tilman, David and Sterner, Robertw.}, - year = 1984, - journal = {Oecologia}, - publisher = {Springer-verlag}, - volume = 61, - pages = {197--200}, - url = {http://dx.doi.org/10.1007/bf00396760}, - number = 2, - doi = {10.1007/bf00396760}, - language = {English} -} - -@Book{tilman1997spatial, - title = {Spatial Ecology: the Role of Space in Population Dynamics and Interspecific Interactions (mpb-30)}, - author = {Tilman, D. and Kareiva, P.}, - year = 1997, - publisher = {Princeton University Press}, - volume = 30 -} - -@Article{titman1976ecological, - title = {Ecological Competition Between Algae: Experimental Confirmation of Resource-based Competition Theory}, - author = {Titman, David}, - year = 1976, - journal = {Science}, - volume = 192, - pages = {463--465}, - number = 4238 -} - -@Book{tomas1997identifying, - title = {Identifying Marine Phytoplankton}, - author = {Tomas, C. R.}, - year = 1997, - publisher = {Academic Pr} -} - -@Article{tomioka2011effect, - title = {Effect of Light Availability on {{\textit{Microcystis aeruginosa}}} Blooms in Shallow Hypereutrophic {Lake Kasumigaura}}, - author = {Tomioka, Noriko and Imai, Akio and Komatsu, Kazuhiro}, - year = 2011, - journal = {Journal of Plankton Research}, - volume = 33, - pages = {1263--1273}, - url = {http://plankt.oxfordjournals.org/content/33/8/1263.abstract}, - number = 8, - doi = {10.1093/plankt/fbr020}, - eprint = {http://plankt.oxfordjournals.org/content/33/8/1263.full.pdf+html} -} - -@Article{tomohisa2002mevalonate, - title = {Mevalonate and Nonmevalonate Pathways for the Biosynthesis of Isoprene Units}, - author = {Tomohisa Kuzuyama}, - year = 2002, - journal = {Bioscience, Biotechnology, and Biochemistry}, - publisher = {Taylor {&} Francis}, - volume = 66, - pages = {1619--1627}, - url = {https://doi.org/10.1271/bbb.66.1619}, - number = 8, - doi = {10.1271/bbb.66.1619}, - note = {Pmid: 12353619}, - eprint = {https://doi.org/10.1271/bbb.66.1619} -} - -@Article{tonk2009production, - title = {Production of Cyanopeptolins, Anabaenopeptins, and Microcystins by the Harmful Cyanobacteria {{\textit{Anabaena}}} 90 and {{\textit{Microcystis}}} {PCC} 7806}, - author = {Linda Tonk and Martin Welker and Jef Huisman and Petra M. Visser}, - year = 2009, - journal = {Harmful Algae}, - volume = 8, - pages = {219--224}, - url = {http://www.sciencedirect.com/science/article/pii/s1568988308000644}, - number = 2, - doi = {10.1016/j.hal.2008.05.005} -} - -@Article{tooming2013from, - title = {From Green to Red: Horizontal Gene Transfer of Phycoerythrin Gene Cluster Between {{\textit{Planktothrix}}} Strains}, - author = {Tooming-klunderud, Ave and Sogge, Hanne and Rounge, Trine Ballestad and Nederbragt, Alexander J. and Lagesen, Karin and Gl{\"o}ckner, Gernot and Hayes, Paul and Rohrlack, Thomas and Jakobsen, Kjetill S.}, - year = 2013, - journal = {Applied and Environmental Microbiology}, - url = {http://aem.asm.org/content/early/2013/08/26/aem.01455-13.abstract}, - doi = {10.1128/aem.01455-13} -} - -@Article{torremorell2009annual, - title = {Annual Patterns of Phytoplankton Density and Primary Production in A Large, Shallow Lake: the Central Role of Light}, - author = {Torremorell, A. and Llames, M. E. and P{\'e}rez, G. L. and Escaray, R. and Bustingorry, J. and Zagarese, H.}, - year = 2009, - journal = {Freshwater Biology}, - publisher = {Blackwell Publishing Ltd}, - volume = 54, - pages = {437--449}, - url = {http://dx.doi.org/10.1111/j.1365-2427.2008.02119.x}, - number = 3, - doi = {10.1111/j.1365-2427.2008.02119.x} -} - -@Article{torres2016assessment, - title = {Assessment of the Effects of Light Availability on Growth and Competition Between Strains of {{\textit{Planktothrix agardhii}}} and {{\textit{Microcystis aeruginosa}}}}, - author = {Torres, Camila De Araujo and Lürling, Miquel and Marinho, Marcelo Manzi}, - year = 2016, - month = may, - journal = {Microbial Ecology}, - volume = 71, - pages = {802--813}, - language = {En}, - number = 4, - doi = {10.1007/s00248-015-0719-z} -} - -@Article{touchette2007eutrophication, - title = {Eutrophication and Cyanobacteria Blooms in Run-of-river Impoundments in {North Carolina}, {USA}}, - author = {Touchette, Brant W and Burkholder, Joann M and Allen, Elle H and Alexander, Jessica L and Kinder, Carol A and Brownie, Cavell and James, Jennifer and Britton, Clay H}, - year = 2007, - journal = {Lake and Reservoir Management}, - publisher = {Taylor \& Francis}, - volume = 23, - pages = {179--192}, - number = 2 -} - -@InCollection{triemer2015photosynthetic, - title = {Chapter 10 - Photosynthetic Euglenoids}, - author = {Richard E. Triemer and Bożena Zakryś}, - year = 2015, - booktitle = {Freshwater Algae of North America (second Edition)}, - publisher = {Academic Press}, - pages = {459--483}, - url = {http://www.sciencedirect.com/science/article/pii/b9780123858764000104}, - address = {Boston}, - isbn = {978-0-12-385876-4}, - doi = {10.1016/b978-0-12-385876-4.00010-4} -} - -@Article{tsao2014monitoring, - title = {Monitoring of Geosmin Producing {{\textit{Anabaena Circinalis}}} Using Quantitative PCR}, - author = {Hsiang-wei Tsao and Atsuko Michinaka and Hung-kai Yen and Steven Giglio and Peter Hobson and Paul Monis and Tsair-fuh Lin}, - year = 2014, - journal = {Water Research}, - volume = 49, - pages = {416--425}, - url = {http://www.sciencedirect.com/science/article/pii/s0043135413008099}, - number = 0, - doi = {10.1016/j.watres.2013.10.028} -} - -@Article{tsuchiya1988identification, - title = {Identification of Volatile Metabolites Produced by Blue-green Algae}, - author = {Tsuchiya, Y. and Matsumoto, A.}, - year = 1988, - journal = {Water Science and Technology}, - volume = 20, - pages = 149, - url = {http://dx.doi.org/10.2166/wst.1988.0236}, - number = {8-9}, - doi = {10.2166/wst.1988.0236} -} - -@Article{tsuchiya1992volatile, - title = {{volatile Organic Sulfur Compounds Associated With Blue-green Algae From Inland Waters of Japan}}, - author = {Tsuchiya, Y. and Watanabe, M. F. and Watanabe, M.}, - year = 1992, - month = 01, - journal = {Water Science and Technology}, - volume = 25, - pages = {123--130}, - url = {https://doi.org/10.2166/wst.1992.0043}, - number = 2, - doi = {10.2166/wst.1992.0043} -} - -@Article{tsuchiya1999characterization, - title = {Characterization of {{oscillatoria}} F. Granulata Producing 2-methylisoborneol and Geosmin}, - author = {Tsuchiya, Y. and Matsumoto, A.}, - year = 1999, - journal = {Water Science and Technology}, - volume = 40, - pages = {245--250}, - number = 6, - doi = {10.1016/s0273-1223(99)00564-8} -} - -@Article{tsujimura2003development, - title = {Development of {{\textit{Anabaena}}} Blooms in A Small Reservoir With Dense Sediment Akinete Population, With Special Reference to Temperature and Irradiance}, - author = {Tsujimura, Shigeo and Okubo, Takuya}, - year = 2003, - journal = {Journal of Plankton Research}, - volume = 25, - pages = {1059--1067}, - url = {http://plankt.oxfordjournals.org/content/25/9/1059.abstract}, - number = 9, - doi = {10.1093/plankt/25.9.1059}, - eprint = {http://plankt.oxfordjournals.org/content/25/9/1059.full.pdf+html} -} - -@Article{tullos2009assessing, - title = {Assessing the Influence of Environmental Impact Assessments on Science and Policy: An Analysis of the Three Gorges Project}, - author = {Desiree Tullos}, - year = 2009, - journal = {Journal of Environmental Management}, - volume = {90, Supplement 3}, - pages = {S208 - S223}, - url = {http://www.sciencedirect.com/science/article/pii/s0301479708002685}, - number = 0, - note = {Understanding and Linking the Biophysical, Socio Economic and Geopolitical Effects of Dams}, - doi = {10.1016/j.jenvman.2008.07.031} -} - -@InCollection{tundisi2003integration, - title = {Integration of Research and Management in Optimizing Multiple Uses of Reservoirs: the Experience in South America and Brazilian Case Studies}, - author = {Tundisi, Jos{\'e} Galizia and Matsumura-tundisi, Takako}, - year = 2003, - booktitle = {Aquatic Biodiversity}, - publisher = {Springer Netherlands}, - volume = 171, - pages = {231--242}, - url = {http://dx.doi.org/10.1007/978-94-007-1084-9_17}, - language = {English}, - isbn = {978-94-010-3785-3}, - doi = {10.1007/978-94-007-1084-9_17} -} - -@Article{tung2008seasonal, - title = {Seasonal Change and Correlation With Environmental Parameters for 2-{MIB} in Feng-shen Reservoir, Taiwan}, - author = {Tung, Shu-chu and Lin, Tsair-fuh and Yang, Feng-cheng and Liu, Chia-lin}, - year = 2008, - journal = {Environmental Monitoring and Assessment}, - publisher = {Springer Netherlands}, - volume = 145, - pages = {407--416}, - url = {http://dx.doi.org/10.1007/s10661-007-0049-9}, - number = {1-3}, - doi = {10.1007/s10661-007-0049-9}, - language = {English} -} - -@Article{ulrich1997effects, - title = {Effects of Land Use in the Drainage Area on Phosphorus Binding and Mobility in the Sediments of Four Drinking-water Reservoirs}, - author = {Ulrich, Kai-uwe}, - year = 1997, - journal = {Hydrobiologia}, - publisher = {Kluwer Academic Publishers}, - volume = 345, - pages = {21--38}, - url = {http://dx.doi.org/10.1023/a%3a1002919129524}, - language = {English}, - number = 1, - doi = {10.1023/a:1002919129524} -} - -@Article{unrein2010dinobryon, - title = {Dinobryon Faculiferum (chrysophyta) in Coastal Mediterranean Seawater: Presence and Grazing Impact on Bacteria}, - author = {Unrein, Fernando and Gasol, Josep M. and Massana, Ramon}, - year = 2010, - journal = {Journal of Plankton Research}, - volume = 32, - pages = {559--564}, - url = {http://plankt.oxfordjournals.org/content/32/4/559.abstract}, - number = 4, - doi = {10.1093/plankt/fbp150}, - eprint = {http://plankt.oxfordjournals.org/content/32/4/559.full.pdf+html} -} - -@Book{usdoa1996national, - title = {National Handbook of Water Quality Monitoring}, - author = {United States Department of Agriculture}, - year = 1996, - publisher = {Natural Resource Conservation Service} -} - -@Article{utermohl1958vervollkommnung, - title = {Zur Vervollkommnung Der Quantitativen Phytoplankton-methodik}, - author = {Uterm{\"o}hl, H.}, - year = 1958, - journal = {Mitteilungen Internationale Vereinigung Für Theoretische Und Angewandte Limnologie}, - volume = 9, - pages = {1--38} -} - -@Article{utkilen1992geosmin, - title = {geosmin Production and Excretion in A Planktonic and Benthic {{\textit{Oscillatoria}}}}, - author = {Utkilen, H. C. and Frøshaug, M.}, - year = 1992, - month = 01, - journal = {Water Science and Technology}, - volume = 25, - pages = {199--206}, - url = {https://doi.org/10.2166/wst.1992.0053}, - number = 2, - doi = {10.2166/wst.1992.0053} -} - -@Article{vaitomaa2003quantitative, - title = {Quantitative {Real-time PCR} for Determination of Microcystin Synthetase E Copy Numbers for {{\textit{Microcystis}}} and {{\textit{Anabaena}}} in Lakes}, - author = {Vaitomaa, Jaana and Rantala, Anne and Halinen, Katrianna and Rouhiainen, Leo and Tallberg, Petra and Mokelke, Lena and Sivonen, Kaarina}, - year = 2003, - journal = {Applied and Environmental Microbiology}, - volume = 69, - pages = {7289--7297}, - url = {http://aem.asm.org/content/69/12/7289.abstract}, - number = 12, - doi = {10.1128/aem.69.12.7289-7297.2003} -} - -@Article{van1992multivariate, - title = {Multivariate Analysis of the Plankton Communities in the Loosdrecht Lakes: Relationship With the Chemical and Physical Environment}, - author = {Van Tongeren, O.f.r. and Van Liere, L. and Gulati, R.d. and Postema, G. and Boesewinkel-de Bruyn, P.j.}, - year = 1992, - journal = {Hydrobiologia}, - publisher = {Kluwer Academic Publishers}, - volume = 233, - pages = {105--117}, - url = {http://dx.doi.org/10.1007/bf00016100}, - number = {1-3}, - doi = {10.1007/bf00016100}, - language = {English} -} - -@Article{van1992production, - title = {Production and Reduction of Geosmin and 2-methylisoborneol During Storage of River Water in Deep Reservoirs}, - author = {Van Breemen, Lwca and Dits, Js and Ketelaars, Ham}, - year = 1992, - journal = {Water Science \& Technology}, - volume = 25, - pages = {233--240}, - number = 2 -} - -@Article{van2011quantitative, - title = {Quantitative Dominance of Seasonally Persistent Filamentous Cyanobacteria ({\textit{Planktothrix rubescens}}) in the Microbial Assemblages of A Temperate Lake}, - author = {Van Den Wyngaert, Silke and Salcher, Michaela M and Pernthaler, Jakob and Zeder, Michael and Posch, Thomas}, - year = 2011, - journal = {Limnology and Oceanography}, - publisher = {American Society of Limnology and Oceanography, Inc., School of Oceanography, Wb-10 Seattle Wa 98195 {USA}}, - volume = 56, - pages = {97--109}, - number = 1 -} - -@Article{vanderploeg1992plankton, - title = {Plankton Ecology in An Ice-covered Bay of Lake Michigan: Utilization of A Winter Phytoplankton Bloom by Reproducing Copepods}, - author = {Vanderploeg, Henry A. and Bolsenga, Stanley J. and Fahnenstiel, Gary L. and Liebig, James R. and Gardner, Wayne S.}, - year = 1992, - journal = {Hydrobiologia}, - volume = {243--244}, - pages = {175--183}, - number = 1 -} - -@Article{vanderploeg1995biology, - title = {Biology of {{\textit{Oscillatoria chalybea}}}, A 2-methylisoborneol Producing Blue-green Alga of {Mississippi Catfish Ponds}}, - author = {Van Der Ploeg, M and Dennis, Me and De Regt, Mq}, - year = 1995, - journal = {Water Science and Technology}, - publisher = {Elsevier}, - volume = 31, - doi = {10.1016/0273-1223(95)00473-Z}, - url = {https://www.sciencedirect.com/science/article/pii/027312239500473Z}, - pages = {173--180}, - issn = {0273-1223}, - number = 11 -} - -@Article{vandewaal2009climate, - title = {Climate-driven Changes in the Ecological Stoichiometry of Aquatic Ecosystems}, - author = {Van De Waal, Dedmer B and Verschoor, Antonie M and Verspagen, Jolanda Mh and Van Donk, Ellen and Huisman, Jef}, - year = 2009, - journal = {Frontiers in Ecology and the Environment}, - publisher = {Eco Soc America}, - volume = 8, - pages = {145--152}, - number = 3 -} - -@Article{vandewaal2010pulsed, - title = {Pulsed Nitrogen Supply Induces Dynamic Changes in the Amino Acid Composition and {{\textit{Microcystin}}} Production of the Harmful Cyanobacterium {{\textit{Planktothrix agardhii}}}}, - author = {Van De Waal, Dedmer B. and Ferreruela, Gonzalo and Tonk, Linda and Van Donk, Ellen and Huisman, Jef and Visser, Petra M. and Matthijs, Hans C.p.}, - year = 2010, - journal = {Fems Microbiology Ecology}, - publisher = {Blackwell Publishing Ltd}, - volume = 74, - pages = {430--438}, - url = {http://dx.doi.org/10.1111/j.1574-6941.2010.00958.x}, - number = 2, - doi = {10.1111/j.1574-6941.2010.00958.x} -} - -@Article{vandewaal2011reversal, - title = {Reversal in Competitive Dominance of A Toxic Versus Non-toxic Cyanobacterium in Response to Rising Co2}, - author = {Van De Waal, Dedmer B and Verspagen, Jolanda Mh and Finke, Jan F and Vournazou, Vasiliki and Immers, Anne K and Kardinaal, W Edwin A and Tonk, Linda and Becker, Sven and Van Donk, Ellen and Visser, Petra M and Others}, - year = 2011, - journal = {The Isme Journal}, - publisher = {Nature Publishing Group}, - volume = 5, - pages = {1438--1450}, - number = 9 -} - -@Article{varela1994simulation, - title = {A Simulation Analysis of Various Biological and Physical Factors Influencing the Deep-chlorophyll Maximum Structure in Oligotrophic Areas}, - author = {R.a Varela and A Cruzado and Joaquín Tintoré}, - year = 1994, - journal = {Journal of Marine Systems}, - volume = 5, - pages = {143--157}, - url = {http://www.sciencedirect.com/science/article/pii/0924796394900280}, - number = 2, - doi = {10.1016/0924-7963(94)90028-0} -} - -@Article{vaughn1967tastes, - title = {Tastes and Odors in Water Supplies}, - author = {Vaughn, James C.}, - year = 1967, - journal = {Environmental Science \& Technology}, - volume = 1, - pages = {703--709}, - number = 9, - doi = {10.1021/es60009a606} -} - -@Article{venter2009photosynthetic, - title = {Photosynthetic Differences Between {{\textit{Microcystis aeruginosa}}} and {{\textit{Oscillatoria Simplicissima}}} in Relation to Species Succession in the Vaal River, South Africa}, - author = {A. Venter and S. Du Plessis and P. Dr Van Heerden and A. J. Strauss and J. Bezuidenhout}, - year = 2009, - journal = {African Journal of Aquatic Science}, - volume = 34, - pages = {159--168}, - url = {http://www.tandfonline.com/doi/abs/10.2989/ajas.2009.34.2.6.893}, - number = 2, - doi = {10.2989/ajas.2009.34.2.6.893}, - eprint = {http://www.tandfonline.com/doi/pdf/10.2989/ajas.2009.34.2.6.893} -} - -@Article{verschoor2013elevated, - title = {Elevated Co2 Concentrations Affect the Elemental Stoichiometry and Species Composition of An Experimental Phytoplankton Community}, - author = {Verschoor, Antonie M. and Van Dijk, Mark A. and Huisman, Jef and Van Donk, Ellen}, - year = 2013, - journal = {Freshwater Biology}, - publisher = {Blackwell Publishing Ltd}, - volume = 58, - pages = {597--611}, - url = {http://dx.doi.org/10.1111/j.1365-2427.2012.02833.x}, - number = 3, - doi = {10.1111/j.1365-2427.2012.02833.x} -} - -@Article{vi1953studies, - title = {Studies on Physiology Feeding of {{\textit{Oscillatoria Splendida Grew.}}} and of {{\textit{Oscillatoria agardhii Gom.}}} and Its Relation to Water Odor and Taste. Ii. Experiments on the Bottom}, - author = {Uspenskaia Vi}, - year = 1953, - volume = 22, - pages = {669--674}, - journaltitle = {Mikrobiologiia}, - number = 6 -} - -@Article{vidal2010effects, - title = {The Effects of Diel Changes in Circulation and Mixing on the Longitudinal Distribution of Phytoplankton in A Canyon-shaped Mediterranean Reservoir}, - author = {Vidal, Javier and Moreno-ostos, Enrique and Escot, Carmelo and Quesada, Ruben and Rueda, Francisco}, - year = 2010, - journal = {Freshwater Biology}, - publisher = {Blackwell Publishing Ltd}, - volume = 55, - pages = {1945--1957}, - url = {http://dx.doi.org/10.1111/j.1365-2427.2010.02428.x}, - number = 9, - doi = {10.1111/j.1365-2427.2010.02428.x} -} - -@Article{viechtbauer2010conducting, - title = {Conducting Meta-analyses in R With the Metafor Package}, - author = {Viechtbauer, Wolfgang}, - year = 2010, - journal = {Journal of Statistical Software}, - volume = 36, - pages = {1--48}, - number = 1 -} - -@Article{visser1996artificial, - title = {Artificial Mixing Prevents Nuisance Blooms of the Cyanobacterium {{\textit{Microcystis}}} in {Lake Nieuwe Meer}, the {Netherlands}}, - author = {Visser, Petra and Ibelings, Bas and Van Der Veer, Bart and Koedood, Jan and Mur, R.}, - year = 1996, - journal = {Freshwater Biology}, - publisher = {Blackwell Science Ltd}, - volume = 36, - pages = {435--450}, - url = {http://dx.doi.org/10.1046/j.1365-2427.1996.00093.x}, - doi = {10.1046/j.1365-2427.1996.00093.x}, - number = 2, - bdsk-url-1 = {http://dx.doi.org/10.1046/j.1365-2427.1996.00093.x} -} - -@Article{visser2016artificial, - title = {Artificial Mixing to Control Cyanobacterial Blooms: A Review}, - author = {Visser, Petra M. and Ibelings, Bas W. and Bormans, Myriam and Huisman, Jef}, - year = 2016, - month = {Sep}, - journal = {Aquatic Ecology}, - volume = 50, - pages = {423--441}, - url = {https://doi.org/10.1007/s10452-015-9537-0}, - number = 3, - doi = {10.1007/s10452-015-9537-0} -} - -@Article{vitousek1987biological, - title = {Biological Invasion by Myrica Faya Alters Ecosystem Development in Hawaii}, - author = {Vitousek, Peter M. and Walker, Lawrence R. and Whiteaker, Louis D. and Mueller-dombois, Dieter and Matson, Pamela A.}, - year = 1987, - journal = {Science}, - volume = 238, - pages = {802--804}, - url = {http://www.sciencemag.org/content/238/4828/802.abstract}, - number = 4828, - doi = {10.1126/science.238.4828.802} -} - -@Article{vorosmarty2000global, - title = {Global Water Resources: Vulnerability From Climate Change and Population Growth}, - author = {V{\"o}r{\"o}smarty, Charles J. and Green, Pamela and Salisbury, Joseph and Lammers, Richard B.}, - year = 2000, - journal = {Science}, - publisher = {American Association for the Advancement of Science}, - volume = 289, - pages = {284--288}, - url = {http://science.sciencemag.org/content/289/5477/284}, - number = 5477, - doi = {10.1126/science.289.5477.284} -} - -@Article{vryzas2009spatial, - title = {Spatial and Temporal Distribution of Pesticide Residues in Surface Waters in Northeastern Greece}, - author = {Vryzas, Z. and Vassiliou, G. and Alexoudis, C. and Papadopoulou-mourkidou, E.}, - year = 2009, - month = {Jan}, - journal = {Water Research}, - publisher = {Pergamon-elsevier Science Ltd}, - volume = 43, - pages = {1--10}, - language = {English}, - number = 1, - doi = {10.1016/j.watres.2008.09.021}, - author-email = {Vryzas@agro.auth.gr} -} - -@Article{wacklin2009nomenclatural, - title = {Nomenclatural Validation of the Genetically Revised Cyanobacterial Genus Dolichospermum (ralfs Ex Bornet Et Flahault) Comb. Nova.}, - author = {Wacklin, Pirjo and Hoffmann, Lucien and Komarek, Jiri}, - year = 2009, - journal = {Fottea}, - volume = 9, - pages = {59--64}, - url = {https://fottea.czechphycology.cz/artkey/fot-200901-0005.php}, - number = 1, - doi = {10.5507/fot.2009.005} -} - -@Article{waite1997sinking, - title = {Sinking Rate Versus Cell Volume Relationships Illuminate Sinking Rate Control Mechanisms in Marine Diatoms}, - author = {Waite, Anya and Fisher, Anne and Thompson, Peter A. and Harrison, Paul J.}, - year = 1997, - journal = {Marine Ecology Progress Series}, - volume = 157, - pages = {97--108}, - url = {http://www.int-res.com/abstracts/meps/v157/p97-108/}, - doi = {Doi:10.3354/meps157097} -} - -@Article{wajon1985determination, - title = {Determination of Trace Levels of Dimethyl Polysulphides by Capillary Gas Chromatography}, - author = {J.e. Wajon and R. Alexander and R.i. Kagi}, - year = 1985, - journal = {Journal of Chromatography A}, - volume = 319, - pages = {187--194}, - url = {http://www.sciencedirect.com/science/article/pii/s0021967301905539}, - doi = {10.1016/s0021-9673(01)90553-9} -} - -@Article{wajon1988controlling, - title = {Controlling Swampy Odors in Drinking Water}, - author = {Wajon, Johannes E. and Kavanagh, Brian V. and Kagi, Robert I. and Rosich, R.s. and Alexander, R.}, - year = 1988, - journal = {American Water Works Association}, - volume = 80, - pages = {77--83}, - url = {http://www.awwa.org/publications/journal-awwa/abstract/articleid/12031.aspx}, - number = 6 -} - -@Article{walsby1968fine, - title = {The Fine Structure of Gas-vacuoles Released From Cells of the Blue-green Alga {{\textit{Anabaena flos-aquae}}}}, - author = {Walsby, A.e. and Eichelberger, H.h.}, - year = 1968, - journal = {Archiv Für Mikrobiologie}, - publisher = {Springer-verlag}, - volume = 60, - pages = {76--83}, - url = {http://dx.doi.org/10.1007/bf00412874}, - number = 1, - doi = {10.1007/bf00412874}, - language = {English} -} - -@Article{walsby1969permeability, - title = {The Permeability of Blue-green Algal Gas-vacuole Membranes to Gas}, - author = {Walsby, A. E.}, - year = 1969, - journal = {Proceedings of the Royal Society of London. Series B. Biological Sciences}, - volume = 173, - pages = {235--255}, - url = {http://rspb.royalsocietypublishing.org/content/173/1031/235.abstract}, - number = 1031, - doi = {10.1098/rspb.1969.0049} -} - -@Article{walsby1978properties, - title = {The Properties and Buoyancy-providing Role of Gas Vacuoles in {{\textit{Trichodesmium Ehrenberg}}}}, - author = {A.e. Walsby}, - year = 1978, - journal = {British Phycological Journal}, - volume = 13, - pages = {103--116}, - url = {http://dx.doi.org/10.1080/00071617800650121}, - number = 2, - doi = {10.1080/00071617800650121}, - eprint = {http://dx.doi.org/10.1080/00071617800650121} -} - -@Article{walsby1980changes, - title = {Changes in Buoyancy of A Planktonic Blue-green Alga in Response to Light Intensity}, - author = {Walsby, A.e. and Booker, M.j.}, - year = 1980, - journal = {British Phycological Journal}, - volume = 15, - pages = {311--319}, - url = {http://www.tandfonline.com/doi/abs/10.1080/00071618000650321}, - number = 4, - doi = {10.1080/00071618000650321}, - eprint = {http://www.tandfonline.com/doi/pdf/10.1080/00071618000650321} -} - -@Article{walsby1991mechanical, - title = {The Mechanical Properties of the {{\textit{Microcystis}}} Gas Vesicle}, - author = {Ae Walsby}, - year = 1991, - journal = {Journal of General Microbiology}, - volume = 137, - pages = {2401 -- 2408} -} - -@Article{walsby1996measurement, - title = {Measurement of Filamentous Cyanobacteria by Image Analysis}, - author = {Anthony E. Walsby and Avril Avery}, - year = 1996, - journal = {Journal of Microbiological Methods}, - volume = 26, - pages = {11--20}, - url = {http://www.sciencedirect.com/science/article/pii/0167701296008160}, - number = {1–2}, - doi = {10.1016/0167-7012(96)00816-0} -} - -@Article{walsby1997modelling, - title = {Modelling the Daily Integral of Photosynthesis by Phytoplankton: Its Dependence on the Mean Depth of the Population}, - author = {Walsby, A. E.}, - year = 1997, - month = {Aug}, - journal = {Hydrobiologia}, - volume = 349, - pages = {65--74}, - url = {https://doi.org/10.1023/a:1003045528581}, - number = 1, - doi = {10.1023/a:1003045528581} -} - -@Article{walsby2002light, - title = {Light-dependent Growth Rate Determines Changes in the Population of {{\textit{Planktothrix rubescens}}} Over the Annual Cycle in {Lake Zürich}, {Switzerland}}, - author = {A. E. Walsby and F. Schanz}, - year = 2002, - journal = {New Phytologist}, - volume = 154, - pages = {671--687}, - url = {https://nph.onlinelibrary.wiley.com/doi/abs/10.1046/j.1469-8137.2002.00401.x}, - number = 3, - doi = {10.1046/j.1469-8137.2002.00401.x}, - eprint = {https://nph.onlinelibrary.wiley.com/doi/pdf/10.1046/j.1469-8137.2002.00401.x} -} - -@Article{walters2013species, - title = {Species- and Community-level Responses Combine to Drive Phenology of Lake Phytoplankton}, - author = {Walters, Annika W. and Sagrario, María De Los ángeles González and Schindler, Daniel E.}, - year = 2013, - journal = {Ecology}, - publisher = {Ecological Society of America}, - volume = 94, - pages = {2188--2194}, - url = {http://dx.doi.org/10.1890/13-0445.1}, - number = 10, - doi = {10.1890/13-0445.1} -} - -@Article{waly2002light, - title = {Light-dependent Growth Rate Determines Changes in the Population of {{\textit{Planktothrix rubescens}}} Over the Annual Cycle in {Lake Zürich}, {Switzerland}}, - author = {A. E. Walsby and F. Schanz}, - year = 2002, - journal = {New Phytologist}, - publisher = {Blackwell Science Ltd}, - volume = 154, - pages = {671--687}, - url = {http://dx.doi.org/10.1046/j.1469-8137.2002.00401.x}, - number = 3, - doi = {10.1046/j.1469-8137.2002.00401.x} -} - -@Article{wang1997fang, - title = {放牧影响下羊草草地主要植物种群生态宽度与生态位重叠的研究}, - author = {王仁忠}, - year = 1997, - journal = {武汉生态学报}, - volume = 21, - pages = {304--311}, - number = 4, - language = {Zh} -} - -@Article{wang1999study, - title = {A Study on the Environmental Geology of the Middle Route Project of the South–north Water Transfer}, - author = {Lansheng Wang and Christian Ma}, - year = 1999, - journal = {Engineering Geology}, - volume = 51, - pages = {153--165}, - url = {http://www.sciencedirect.com/science/article/pii/s001379529800043x}, - number = 3, - doi = {10.1016/s0013-7952(98)00043-x} -} - -@Article{wang2001structure, - title = {Structure and Density of the Phytoplankton Community of {Miyun Reservoir}}, - author = {Wang, Jianting and Wu, Dianwei and Zhao, Pan and Zhang, Weihua and Gang, Yongyun and Others}, - year = 2001, - journal = {Acta Phytoecological Sinica}, - volume = 25, - pages = 501, - number = 4 -} - -@Article{wang2006miyun, - title = {密云水库水质变化规律初探}, - author = {王蕾 and 杨敏 and 郭召海}, - year = 2006, - journal = {中国给水排水}, - volume = 22, - pages = {45--48}, - number = 13, - language = {Zh} -} - -@Article{wang2006water, - title = {Water Quality Modeling and Pollution Control for the Eastern Route of South to North Water Transfer Project in {China}}, - author = {Chao Wang and Yan-ying Wang and Pei-fang Wang}, - year = 2006, - journal = {Journal of Hydrodynamics, Ser. B}, - volume = 18, - pages = {253--261}, - url = {http://www.sciencedirect.com/science/article/pii/s1001605806600012}, - number = 3, - doi = {10.1016/s1001-6058(06)60001-2} -} - -@Article{wang2008biochemistry, - title = {Biochemistry and Molecular Genetics of the Biosynthesis of the Earthy Odorant Methylisoborneol in Streptomyces Coelicolor}, - author = {Wang, Chieh-mei and Cane, David E.}, - year = 2008, - journal = {Journal of the American Chemical Society}, - volume = 130, - pages = {8908--8909}, - url = {http://dx.doi.org/10.1021/ja803639g}, - number = 28, - doi = {10.1021/ja803639g}, - note = {Pmid: 18563898}, - eprint = {http://dx.doi.org/10.1021/ja803639g} -} - -@Article{wang2008tn, - title = {Tn:tp Ratio and Planktivorous Fish Do Not Affect Nutrient-chlorophyll Relationships in Shallow Lakes}, - author = {Wang, Hai-jun and Liang, Xiao-min and Jiang, Ping-hong and Wang, Jian and Wu, Shi-kai and Wang, Hong-zhu}, - year = 2008, - journal = {Freshwater Biology}, - publisher = {Blackwell Publishing Ltd}, - volume = 53, - pages = {935--944}, - url = {http://dx.doi.org/10.1111/j.1365-2427.2007.01950.x}, - number = 5, - doi = {10.1111/j.1365-2427.2007.01950.x} -} - -@Article{wang2009miyun, - title = {密云水库水质研究综述}, - author = {王庆锁 and 梅旭荣 and 张燕卿}, - year = 2009, - journal = {中国农业科技导报}, - volume = 11, - pages = {45--50}, - number = 1, - language = {Zh} -} - -@Article{wang2009spatial, - title = {The Spatial Distribution and Emission of Nitrous Oxide (n2o) in A Large Eutrophic Lake in Eastern {China}: Anthropogenic Effects}, - author = {Shilu Wang and Congqiang Liu and Kevin M. Yeager and Guojiang Wan and Jun Li and Faxiang Tao and Yingchun Lǚ and Fang Liu and Chengxin Fan}, - year = 2009, - journal = {Science of the Total Environment}, - volume = 407, - pages = {3330--3337}, - url = {http://www.sciencedirect.com/science/article/pii/s0048969708010577}, - number = 10, - doi = {10.1016/j.scitotenv.2008.10.037} -} - -@Article{wang2011genes, - title = {Genes Associated With 2-methylisoborneol Biosynthesis in Cyanobacteria: Isolation, Characterization, and Expression in Response to Light}, - author = {Wang, Zhongjie and Xu, Yao and Shao, Jihai and Wang, Jie and Li, Renhui}, - year = 2011, - month = 04, - journal = {Plos One}, - publisher = {Public Library of Science}, - volume = 6, - pages = {E18665}, - url = {http://dx.doi.org/10.1371%2fjournal.pone.0018665}, - number = 4, - doi = {10.1371/journal.pone.0018665} -} - -@Article{wang2011perfluorinated, - title = {Perfluorinated Compounds in Water, Sediment and Soil From Guanting Reservoir, {China}}, - author = {Wang, Tieyu and Chen, Chunli and Naile, Jonathane. and Khim, Jongseong and Giesy, Johnp. and Lu, Yonglong}, - year = 2011, - journal = {Bulletin of Environmental Contamination and Toxicology}, - publisher = {Springer-verlag}, - volume = 87, - pages = {74--79}, - url = {http://dx.doi.org/10.1007/s00128-011-0307-y}, - language = {English}, - doi = {10.1007/s00128-011-0307-y} -} - -@PhDThesis{wang2012lan, - title = {蓝藻土霉异味物质合成基因的研究及其生态应用}, - author = {王中杰 and 李仁辉}, - school = {中国科学院研究生院}, - year = 2012 -} - -@Article{wang2013differences, - title = {Differences in Microcystin Production and Genotype Composition Among {{\textit{Microcystis}}} Colonies of Different Sizes in {Lake Taihu}}, - author = {Xingyu Wang and Mengjia Sun and Meijuan Xie and Min Liu and Lan Luo and Pengfu Li and Fanxiang Kong}, - year = 2013, - journal = {Water Research}, - volume = 47, - pages = {5659--5669}, - url = {http://www.sciencedirect.com/science/article/pii/s0043135413005319}, - number = 15, - doi = {10.1016/j.watres.2013.06.040} -} - -@MastersThesis{wang2013study, - title = {基于gis 的流域水质目标管理研究}, - author = {王婷}, - school = {兰州交通大学}, - year = 2013 -} - -@InCollection{wang2014conserved, - title = {Conserved Regions in 16s Ribosome Rna Sequences and Primer Design for Studies of Environmental Microbes}, - author = {Wang, Yong and Qian, Pei-yuan}, - year = 2014, - booktitle = {Encyclopedia of Metagenomics}, - publisher = {Springer New York}, - pages = {1--6}, - url = {http://dx.doi.org/10.1007/978-1-4614-6418-1_772-1}, - doi = {10.1007/978-1-4614-6418-1_772-1}, - language = {English} -} - -@Article{wang2014genetic, - title = {Genetic Basis for Geosmin Production by the Water Bloom-forming Cyanobacterium, {{\textit{Anabaena ucrainica}}}}, - author = {Wang, Zhongjie and Shao, Jihai and Xu, Yao and Yan, Biao and Li, Renhui}, - year = 2014, - journal = {Water}, - volume = 7, - number = 1 -} - -@InCollection{wang2015conserved, - title = {Conserved Regions in 16s Ribosome Rna Sequences and Primer Design for Studies of Environmental Microbes}, - author = {Wang, Yong and Qian, Pei-yuan}, - year = 2015, - booktitle = {Encyclopedia of Metagenomics}, - publisher = {Springer Us}, - pages = {106--110}, - url = {http://dx.doi.org/10.1007/978-1-4899-7478-5_772}, - isbn = {978-1-4899-7477-8}, - doi = {10.1007/978-1-4899-7478-5_772}, - language = {English} -} - -@Article{wang2015effects, - title = {Effects of Light and Temperature on the Odor Production of 2-methylisoborneol-producing {{\textit{Pseudanabaena}}} sp. {and} Geosmin-producing {{\textit{Anabaena ucrainica}}} (cyanobacteria)}, - author = {Zhongjie Wang and Renhui Li}, - year = 2015, - journal = {Biochemical Systematics and Ecology}, - volume = 58, - pages = {219--226}, - url = {http://www.sciencedirect.com/science/article/pii/s0305197814003378}, - doi = {10.1016/j.bse.2014.12.013} -} - -@Article{wang2015establishment, - title = {Establishment and Field Applications of {Real-time PCR} Methods for the Quantification of Potential {MIB}-producing Cyanobacteria in Aquatic Systems}, - author = {Wang, Zhongjie and Song, Gaofei and Shao, Jihai and Tan, Wenhua and Li, Yeguang and Li, Renhui}, - year = 2015, - journal = {Journal of Applied Phycology}, - volume = 28, - pages = {325--333}, - url = {http://dx.doi.org/10.1007/s10811-015-0529-1}, - number = 1, - doi = {10.1007/s10811-015-0529-1} -} - -@Article{wang2015genetic, - title = {Genetic Basis for Geosmin Production by the Water Bloom-forming Cyanobacterium, {{\textit{Anabaena ucrainica}}}}, - author = {Wang, Zhongjie and Shao, Jihai and Xu, Yao and Yan, Biao and Li, Renhui}, - year = 2015, - journal = {Water}, - volume = 7, - pages = {175--187}, - url = {https://www.mdpi.com/2073-4441/7/1/175}, - number = 1, - doi = {10.3390/w7010175} -} - -@Article{wang2015ha, - title = {哈尔滨西泉眼水库夏季浮游植物群落结构动态特征}, - author = {王建国 and 于洪贤 and 马成学 and 姚允龙 and 汪义杰and 马金龙 and 唐红亮 and 刘壮添 and 李丽}, - year = 2015, - journal = {湖泊科学}, - volume = 27, - pages = {667--678}, - number = 4, - language = {Zh} -} - -@Article{wang2015isolation, - title = {Isolation and Characterization of A New Reported Cyanobacterium {{\textit{Leptolyngbya Bijugata}}} Coproducing Odorous Geosmin and 2-methylisoborneol}, - author = {Wang, Zhongjie and Xiao, Peng and Song, Gaofei and Li, Yeguang and Li, Renhui}, - year = 2015, - month = {Aug}, - journal = {Environmental Science and Pollution Research}, - volume = 22, - pages = {12133--12140}, - url = {https://doi.org/10.1007/s11356-015-4470-2}, - number = 16, - doi = {10.1007/s11356-015-4470-2} -} - -@Article{wang2015qing, - title = {青草沙水库颤藻种群变化}, - author = {王先云 and 吴雪飞 and 张东 and 卢宁}, - year = 2015, - journal = {净水技术}, - volume = 34, - number = 2, - language = {Zh}, - upages = {72--76} -} - -@Article{wang2016establishment, - title = {Establishment and Field Applications of {Real-time PCR} Methods for the Quantification of Potential {MIB}-producing Cyanobacteria in Aquatic Systems}, - author = {Wang, Zhongjie and Song, Gaofei and Shao, Jihai and Tan, Wenhua and Li, Yeguang and Li, Renhui}, - year = 2016, - month = {Feb}, - journal = {Journal of Applied Phycology}, - volume = 28, - pages = {325--333}, - url = {https://doi.org/10.1007/s10811-015-0529-1}, - number = 1, - doi = {10.1007/s10811-015-0529-1} -} - -@PhDThesis{wang2016san, - title = {三峡水库浮游植物群落结构时空动态及其影响因子研究}, - author = {王静雅 and 李钟杰}, - school = {中国科学院大学}, - year = 2016 -} - -@Article{wang2017qun, - title = {群动盖丝藻(geitlerinema Ionicum)中国蓝藻门一个新纪录种}, - author = {王梦梦 and 杨丽 and 徐肖莹 and 张玮 and 王丽卿}, - year = 2017, - volume = 26, - pages = {258--262}, - journaltitle = {上海海洋大学学报}, - number = 02 -} - -@Article{wang2017understanding, - title = {Understanding the Transport Feature of Bloom-forming {{\textit{Microcystis}}} in A Large Shallow Lake: A New Combined Hydrodynamic and Spatially Explicit Agent-based Modelling Approach}, - author = {Chao Wang and Tao Feng and Peifang Wang and Jun Hou and Jin Qian}, - year = 2017, - journal = {Ecological Modelling}, - volume = 343, - pages = {25--38}, - url = {http://www.sciencedirect.com/science/article/pii/s0304380016305920}, - doi = {10.1016/j.ecolmodel.2016.10.017} -} - -@MastersThesis{wang2018shang, - title = {上海市河道拉氏拟浮丝藻（planktonthricoides Raciborskii）与环境因子的关系研究}, - author = {王梦梦}, - school = {上海海洋大学}, - year = 2018 -} - -@Article{wang2018shanghai, - title = {上海市河道水体拟浮丝藻生物量与环境因子的回归分析}, - author = {王梦梦 and 张玮 and 杨丽 and 徐肖莹 and 王丽卿}, - year = 2018, - journal = {生态学杂志}, - volume = 37, - pages = {187--193}, - number = 01 -} - -@Article{wang2018tropic, - title = {Trophic State Assessment of Global Inland Waters Using A Modis-derived Forel-ule Index}, - author = {Shenglei Wang and Junsheng Li and Bing Zhang and Evangelos Spyrakos and Andrew N. Tyler and Qian Shen and Fangfang Zhang and Tiit Kuster and Moritz K. Lehmann and Yanhong Wu and Dailiang Peng}, - year = 2018, - journal = {Remote Sensing of Environment}, - volume = 217, - pages = {444--460}, - url = {http://www.sciencedirect.com/science/article/pii/s0034425718304012}, - doi = {10.1016/j.rse.2018.08.026} -} - -@PhDThesis{wang2019zhong, - title = {中国栅藻科绿藻的分类学及系统发育学研究}, - author = {王清华 and 胡征宇}, - school = {中国科学院大学}, - year = 2019 -} - -@Misc{water2014south, - title = {South-to-north Water Diversion Project, {China}}, - author = {Anonymous}, - year = 2014, - publisher = {Water-technology.net}, - url = {http://www.water-technology.net/projects/south_north/}, - howpublished = {\url{http://www.water-technology.net/projects/south_north/}} -} - -@Article{watermann1999competition, - title = {Competition Between Benthic Cyanobacteria and Diatoms As Influenced by Different Grain Sizes and Temperatures}, - author = {F. Watermann and Helmut Hillebrand and G. Gerdes and W. E. Krumbein and Ulrich Sommer}, - year = 1999, - journal = {Marine Ecology Progress Series}, - publisher = {Inter Research}, - volume = 187, - pages = {77--87}, - url = {http://eprints.uni-kiel.de/14109/}, - doi = {10.3354/meps187077} -} - -@Article{watson2000quantitative, - title = {Quantitative Analysis of Trace Levels of Geosmin and {MIB} in Source and Drinking Water Using Headspace Spme}, - author = {Susan B. Watson and Brian Brownlee and Trevor Satchwill and Erika E. Hargesheimer}, - year = 2000, - journal = {Water Research}, - volume = 34, - pages = {2818--2828}, - url = {http://www.sciencedirect.com/science/article/pii/s0043135400000270}, - number = 10, - doi = {10.1016/s0043-1354(00)00027-0} -} - -@Article{watson2001under, - title = {Under-ice Blooms and Source-water Odour in A Nutrient-poor Reservoir: Biological, Ecological and Applied Perspectives}, - author = {Watson, S. B. and Satchwill, T. and Dixon, E. and Mccauley, E.}, - year = 2001, - journal = {Freshwater Biology}, - publisher = {Blackwell Science Ltd}, - volume = 46, - pages = {1553--1567}, - url = {http://dx.doi.org/10.1046/j.1365-2427.2001.00769.x}, - number = 11, - doi = {10.1046/j.1365-2427.2001.00769.x} -} - -@Article{watson2001underice, - title = {Under-ice Blooms and Source-water Odour in A Nutrient-poor Reservoir: Biological, Ecological and Applied Perspectives}, - author = {Watson, S. B. and Satchwill, T. and Dixon, E. and Mccauley, E.}, - year = 2001, - journal = {Freshwater Biology}, - publisher = {Blackwell Science Ltd}, - volume = 46, - pages = {1553--1567}, - url = {http://dx.doi.org/10.1046/j.1365-2427.2001.00769.x}, - number = 11, - doi = {10.1046/j.1365-2427.2001.00769.x} -} - -@Article{watson2003cyanobacterial, - title = {Cyanobacterial and Eukaryotic Algal Odour Compounds: Signals Or By-products? A Review of Their Biological Activity}, - author = {Watson, Susan B}, - year = 2003, - journal = {Phycologia}, - publisher = {The International Phycological Society Phycologia Business Office, Allen Press, 810 East 10th Street, Po Box 1897, Lawrence, Ks 66044-8897}, - volume = 42, - pages = {332--350}, - url = {http://dx.doi.org/10.2216/i0031-8884-42-4-332.1}, - number = 4, - doi = {10.2216/i0031-8884-42-4-332.1} -} - -@Article{watson2004aquatic, - title = {Aquatic Taste and Odor: A Primary Signal of Drinking-Water Integrity}, - author = {Susan B. Watson}, - year = 2004, - journal = {Journal of Toxicology and Environmental Health, Part A}, - publisher = {Taylor & Francis}, - volume = 67, - pages = {1779--1795}, - url = {https://doi.org/10.1080/15287390490492377}, - number = {20-22}, - doi = {10.1080/15287390490492377}, - note = {PMID: 15371216}, - eprint = {https://doi.org/10.1080/15287390490492377} -} - -@Article{watson2007off, - title = {Off Flavours in Large Waterbodies: Physics, Chemistry and Biology in Synchrony}, - author = {Watson, Sb and Charlton, M and Rao, Yr and Howell, T and Ridal, J and Brownlee, B and Marvin, C and Millard, S}, - year = 2007, - journal = {Water Science and Technology}, - publisher = {Iwa Publishing}, - volume = 55, - pages = {1--8}, - doi = {10.2166/wst.2007.155}, - number = 5 -} - -@Article{watson2008taste, - title = {Taste and Odour and Cyanobacterial Toxins: Impairment, Prediction, and Management in the Great Lakes}, - author = {Watson, Susan B Watson Sb and Ridal, Jeff Ridal J and Boyer, Gregory L Boyer Gl}, - year = 2008, - journal = {Canadian Journal of Fisheries and Aquatic Sciences}, - publisher = {Nrc Research Press}, - volume = 65, - pages = {1779--1796}, - url = {http://www.nrcresearchpress.com/doi/abs/10.1139/f08-084}, - number = 8, - doi = {10.1139/f08-084}, - eprint = {http://www.nrcresearchpress.com/doi/pdf/10.1139/f08-084} -} - -@InCollection{watson2015harmful, - title = {Chapter 20 - Harmful Algal Blooms}, - author = {Sue B. Watson and Brian A. Whitton and Scott N. Higgins and Hans W. Paerl and Bryan W. Brooks and John D. Wehr}, - year = 2015, - booktitle = {Freshwater Algae of North America (second Edition)}, - publisher = {Academic Press}, - pages = {873--920}, - url = {http://www.sciencedirect.com/science/article/pii/b9780123858764000207}, - address = {Boston}, - isbn = {978-0-12-385876-4}, - doi = {10.1016/b978-0-12-385876-4.00020-7} -} - -@Article{watson2016biochemistry, - title = {Biochemistry and Genetics of Taste- and Odor-producing Cyanobacteria}, - author = {Susan B. Watson and Paul Monis and Peter Baker and Steven Giglio}, - year = 2016, - journal = {Harmful Algae}, - volume = 54, - pages = {112--127}, - url = {http://www.sciencedirect.com/science/article/pii/s1568988315301530}, - doi = {10.1016/j.hal.2015.11.008} -} - -@Article{wee1994production, - title = {Production of the Taste/odor-causing Compound, Trans-2, Cis-6-nonadienal, Within the Synurophyceae}, - author = {Wee, James L and Harris, Susan A and Smith, James P and Dionigi, Christopher P and Millie, David F}, - year = 1994, - journal = {Journal of Applied Phycology}, - publisher = {Springer}, - volume = 6, - pages = {365--369}, - number = 4 -} - -@InCollection{wehr2015brown, - title = {Chapter 19 - Brown Algae}, - author = {John D. Wehr}, - year = 2015, - booktitle = {Freshwater Algae of North America (second Edition)}, - publisher = {Academic Press}, - pages = {851--871}, - url = {http://www.sciencedirect.com/science/article/pii/b9780123858764000190}, - address = {Boston}, - isbn = {978-0-12-385876-4}, - doi = {10.1016/b978-0-12-385876-4.00019-0} -} - -@InCollection{wehr2015habitats, - title = {Chapter 2 - Habitats of Freshwater Algae}, - author = {John D. Wehr and Robert G. Sheath}, - year = 2015, - booktitle = {Freshwater Algae of North America (second Edition)}, - publisher = {Academic Press}, - pages = {13--74}, - url = {http://www.sciencedirect.com/science/article/pii/b9780123858764000025}, - address = {Boston}, - isbn = {978-0-12-385876-4}, - doi = {10.1016/b978-0-12-385876-4.00002-5} -} - -@Book{wei2002shui, - title = {水和废水监测分析方法}, - author = {Fusheng Wei and Wenqi Qi and Tong Bi and Zongguang Sun and Yeru Huang and Yingwa Shen}, - year = 2002, - publisher = {中国环境科学出版社}, - pages = {1--784}, - language = {Zh} -} - -@Article{wei2010game, - title = {Game Theory Based Models to Analyze Water Conflicts in the Middle Route of the South-to-north Water Transfer Project in {China}}, - author = {Shouke Wei and Hong Yang and Karim Abbaspour and Jamshid Mousavi and Albrecht Gnauck}, - year = 2010, - journal = {Water Research}, - volume = 44, - pages = {2499--2516}, - url = {http://www.sciencedirect.com/science/article/pii/s0043135410000552}, - number = 8, - doi = {10.1016/j.watres.2010.01.021} -} - -@Article{weisse2018rapid, - title = {Rapid Detection and Quantification of the Potentially Toxic Cyanobacterium {{\textit{Planktothrix rubescens}}} by In-vivo Fluorometry and Flow Cytometry}, - author = {Thomas Weisse and Victoria Bergkemper}, - year = 2018, - journal = {Water Research}, - volume = 138, - pages = {234--240}, - url = {https://www.sciencedirect.com/science/article/pii/s0043135418302483}, - doi = {10.1016/j.watres.2018.03.052}, - language = {Zh} -} - -@Article{weissing1994growth, - title = {Growth and Competition in A Light Gradient}, - author = {Franz J. Weissing and Jef Huisman}, - year = 1994, - journal = {Journal of Theoretical Biology}, - volume = 168, - pages = {323--336}, - url = {http://www.sciencedirect.com/science/article/pii/s0022519384711131}, - number = 3, - doi = {10.1006/jtbi.1994.1113} -} - -@Article{weithoff2003concepts, - title = {The Concepts of `plant Functional Types' and `functional Diversity'in Lake Phytoplankton--a New Understanding of Phytoplankton Ecology?}, - author = {Weithoff, Guntram}, - year = 2003, - journal = {Freshwater Biology}, - publisher = {Wiley Online Library}, - volume = 48, - pages = {1669--1675}, - number = 9 -} - -@Book{welch1992ecological, - title = {Ecological Effects of Wastewater: Applied Limnology and Pollution Effects}, - author = {Welch, Eugene B and Lindell, Tommy}, - year = 1992, - publisher = {Routledge} -} - -@Article{welker2004diversity, - title = {Diversity of Coexisting {{\textit{Planktothrix}}} (cyanobacteria) Chemotypes Deduced by Mass Spectral Analysis of Microystins and Other Oligopeptides}, - author = {Welker, Martin and Christiansen, Guntram and D{\"o}hren, Hans}, - year = 2004, - journal = {Archives of Microbiology}, - publisher = {Springer-verlag}, - volume = 182, - pages = {288--298}, - url = {http://dx.doi.org/10.1007/s00203-004-0711-3}, - number = 4, - doi = {10.1007/s00203-004-0711-3}, - language = {English} -} - -@Article{wert2013effect, - title = {Effect of Oxidant Exposure on the Release of Intracellular Microcystin, {MIB}, and Geosmin From Three Cyanobacteria Species}, - author = {Eric C. Wert and Julie A. Korak and Rebecca A. Trenholm and Fernando L. Rosario-ortiz}, - year = 2013, - journal = {Water Research}, - pages = {-}, - url = {http://www.sciencedirect.com/science/article/pii/s0043135413008993}, - number = 0, - doi = {10.1016/j.watres.2013.11.001} -} - -@Article{westerhoff2005seasonal, - title = {Seasonal Occurrence and Degradation of 2-methylisoborneol in Water Supply Reservoirs}, - author = {Paul Westerhoff and M. Rodriguez-hernandez and Larry Baker and Milton Sommerfeld}, - year = 2005, - journal = {Water Research}, - volume = 39, - pages = {4899--4912}, - url = {http://www.sciencedirect.com/science/article/pii/s0043135405005440}, - number = 20, - doi = {10.1016/j.watres.2005.06.038} -} - -@Article{westwood2004effect, - title = {Effect of Mixing Patterns and Light Dose on Growth of {{\textit{Anabaena Circinalis}}} in A Turbid, Lowland River}, - author = {Westwood, Karen J. and Ganf, George G.}, - year = 2004, - journal = {River Research and Applications}, - volume = 20, - pages = {115--126}, - url = {https://onlinelibrary.wiley.com/doi/abs/10.1002/rra.725}, - number = 2, - doi = {10.1002/rra.725}, - eprint = {https://onlinelibrary.wiley.com/doi/pdf/10.1002/rra.725} -} - -@Article{wetzel1975limnology, - title = {Limnology: Philadelphia}, - author = {Wetzel, Robert G}, - year = 1975, - journal = {Wb Saunders Company}, - volume = 3 -} - -@Article{wetzel1991limnological, - title = {Limnological Analyses, Springer Verlag}, - author = {Wetzel, Robert G and Likens, Gene E}, - year = 1991, - journal = {New York}, - volume = 391 -} - -@Article{wetzel2001lake, - title = {Lake and River Ecosystems}, - author = {Wetzel, Robert G}, - year = 2001, - journal = {Wb Saunders Co, Philadelphia} -} - -@Article{wetzel2001limnology, - title = {Limnology, 3 E. Lake and River Ecosystems}, - author = {Wetzel, R}, - year = 2001, - journal = {Academic Press, 525 B Street, Ste. 1900, San Diego, Ca 92101, {USA}. 850}, - pages = 850 -} - -@Article{whelton2004relationship, - title = {Relationship Between Intensity, Concentration, and Temperature for Drinking Water Odorants}, - author = {Andrew J. Whelton and Andrea M. Dietrich}, - year = 2004, - journal = {Water Research}, - volume = 38, - pages = {1604--1614}, - url = {http://www.sciencedirect.com/science/article/pii/s004313540300695x}, - number = 6, - doi = {10.1016/j.watres.2003.11.036} -} - -@Article{whitford1960current, - title = {The Current Effect and Growth of Fresh-water Algae}, - author = {L. A. Whitford}, - year = 1960, - journal = {Transactions of the American Microscopical Society}, - publisher = {[american Microscopical Society, Wiley]}, - volume = 79, - pages = {302--309}, - url = {http://www.jstor.org/stable/3223738}, - number = 3 -} - -@Article{whitford1961effect, - title = {Effect of Current on Mineral Uptake and Respiration by A Fresh-water Alga1}, - author = {Whitford, L. A. and Schumacher, G. J.}, - year = 1961, - journal = {Limnology and Oceanography}, - volume = 6, - pages = {423--425}, - url = {http://dx.doi.org/10.4319/lo.1961.6.4.0423}, - number = 4, - doi = {10.4319/lo.1961.6.4.0423} -} - -@InBook{whitton1992diversity, - title = {Diversity, Ecology, and Taxonomy of the Cyanobacteria}, - author = {Whitton, Brian A.}, - year = 1992, - booktitle = {Photosynthetic Prokaryotes}, - publisher = {Springer Us}, - pages = {1--51}, - url = {http://dx.doi.org/10.1007/978-1-4757-1332-9_1}, - address = {Boston, Ma}, - isbn = {978-1-4757-1332-9}, - doi = {10.1007/978-1-4757-1332-9_1} -} - -@InCollection{whitton2002ecology, - title = {Cyanotoxins}, - author = {Dow, Crawfords and Swoboda, Uthayak}, - year = 2002, - booktitle = {The Ecology of Cyanobacteria}, - publisher = {Springer Netherlands}, - pages = {613--632}, - url = {http://dx.doi.org/10.1007/0-306-46855-7_22}, - isbn = {978-0-7923-4735-4}, - doi = {10.1007/0-306-46855-7_22}, - language = {English} -} - -@InCollection{whitton2012ecology, - title = {Introduction to the Cyanobacteria}, - author = {Whitton, Briana. and Potts, Malcolm}, - year = 2012, - booktitle = {Ecology of Cyanobacteria Ii}, - publisher = {Springer Netherlands}, - pages = {1--13}, - url = {http://dx.doi.org/10.1007/978-94-007-3855-3_1}, - isbn = {978-94-007-3854-6}, - doi = {10.1007/978-94-007-3855-3_1}, - language = {English} -} - -@TechReport{who2011guidelines, - title = {Guidelines for {{Drinking}}-{{Water Quality}}}, - author = {WHO, World Health Organization}, - year = 2011, - address = {Geneva, Switzerland}, - institution = {{World Health Organization}} -} - -@InCollection{wickham2009ggplot, - title = {Introduction}, - author = {Wickham, Hadley}, - year = 2009, - booktitle = {{ggplot2}}, - publisher = {Springer New York}, - pages = {1--7}, - url = {http://dx.doi.org/10.1007/978-0-387-98141-3_1}, - isbn = {978-0-387-98140-6}, - doi = {10.1007/978-0-387-98141-3_1}, - language = {English} -} - -@Article{wilhelm2011relationships, - title = {The Relationships Between Nutrients, Cyanobacterial Toxins and the Microbial Community in Taihu (lake Tai), {China}}, - author = {Steven W. Wilhelm and Sarah E. Farnsley and Gary R. Lecleir and Alice C. Layton and Michael F. Satchwell and Jennifer M. Debruyn and Gregory L. Boyer and Guangwei Zhu and Hans W. Paerl}, - year = 2011, - journal = {Harmful Algae}, - volume = 10, - pages = {207--215}, - url = {http://www.sciencedirect.com/science/article/pii/s1568988310001150}, - number = 2, - doi = {10.1016/j.hal.2010.10.001} -} - -@Article{wilken2014biological, - title = {Biological Control of Toxic Cyanobacteria by Mixotrophic Predators: An Experimental Test of Intraguild Predation Theory}, - author = {Wilken, Susanne and Verspagen, Jolanda M. H. and Naus-wiezer, Suzanne and Van Donk, Ellen and Huisman, Jef}, - year = 2014, - month = {Jul}, - journal = {Ecological Applications}, - publisher = {Ecological Society of America}, - volume = 24, - pages = {1235--1249}, - url = {http://dx.doi.org/10.1890/13-0218.1}, - number = 5, - doi = {10.1890/13-0218.1} -} - -@Article{wilkins1999identification, - title = {Identification of Phytoplankton From Flow Cytometry Data by Using Radial Basis Function Neural Networks}, - author = {Wilkins, M. F. and Boddy, Lynne and Morris, C. W. and Jonker, R. R.}, - year = 1999, - journal = {Applied and Environmental Microbiology}, - volume = 65, - pages = {4404--4410}, - url = {http://aem.asm.org/content/65/10/4404.abstract}, - number = 10 -} - -@Article{wilkinson2020vertical, - title = {Vertical Heterogeneities of Cyanobacteria and Microcystin Concentrations in Lakes Using A Seasonal {{\textit{in-situ}}} Monitoring Station}, - author = {A.a. Wilkinson and M. Hondzo and M. Guala}, - year = 2020, - journal = {Global Ecology and Conservation}, - volume = 21, - pages = {E00838}, - url = {http://www.sciencedirect.com/science/article/pii/s2351989419305244}, - doi = {10.1016/j.gecco.2019.e00838} -} - -@Article{willen1997water, - title = {Water-blooming and Toxin-producing Cyanobacteria in Swedish Fresh and Bracish Waters, 1981--1995}, - author = {Will{\'e}n, Torbj{\"o}rn and Mattsson, Roland}, - year = 1997, - journal = {Hydrobiologia}, - publisher = {Kluwer Academic Publishers}, - volume = 353, - pages = {181--192}, - url = {http://dx.doi.org/10.1023/a%3a1003047019422}, - language = {English}, - doi = {10.1023/a:1003047019422} -} - -@Article{williams2011synedra, - title = {Synedra, Ulnaria: Definitions and Descriptions – A Partial Resolution}, - author = {Williams, David M.}, - year = 2011, - journal = {Diatom Research}, - volume = 26, - pages = {149--153}, - url = {http://www.tandfonline.com/doi/abs/10.1080/0269249x.2011.587646}, - number = 2, - doi = {10.1080/0269249x.2011.587646}, - eprint = {http://www.tandfonline.com/doi/pdf/10.1080/0269249x.2011.587646} -} - -@Article{williams2013mining, - title = {Mining Monitored Data for Decision-making With A Bayesian Network Model}, - author = {B.j. Williams and B. Cole}, - year = 2013, - journal = {Ecological Modelling}, - volume = 249, - pages = {26--36}, - url = {http://www.sciencedirect.com/science/article/pii/s030438001200333x}, - number = 0, - note = {Modelling for Decision Making in Ecological Systems}, - doi = {10.1016/j.ecolmodel.2012.07.008} -} - -@Article{wnorowski1992incidence, - title = {Incidence of Off-flavors in South African Surface Waters}, - author = {Wnorowski, Au and Scott, We}, - year = 1992, - journal = {Water Science and Technology}, - publisher = {Iwa Publishing}, - volume = 25, - pages = {225--232}, - number = 2 -} - -@Article{wondie2007seasonal, - title = {Seasonal Variation in Primary Production of A Large High Altitude Tropical Lake ({Lake Tana}, {Ethiopia}): Effects of Nutrient Availability and Water Transparency}, - author = {Wondie, Ayalew and Mengistu, Seyoum and Vijverberg, Jacobus and Dejen, Eshete}, - year = 2007, - journal = {Aquatic Ecology}, - publisher = {Kluwer Academic Publishers}, - volume = 41, - pages = {195--207}, - url = {http://dx.doi.org/10.1007/s10452-007-9080-8}, - language = {English}, - doi = {10.1007/s10452-007-9080-8} -} - -@Article{wood2000modelling, - title = {Modelling and Smoothing Parameter Estimation With Multiple Quadratic Penalties}, - author = {S. N. Wood}, - year = 2000, - journal = {Journal of the Royal Statistical Society (b)}, - volume = 62, - pages = {413--428}, - number = 2 -} - -@Article{wood2001microbes, - title = {Microbes As A Source of Earthy Flavours in Potable Water - A Review}, - author = {Wood, S. and Williams, St and White, Wr}, - year = 2001, - journal = {International Biodeterioration \& Biodegradation}, - publisher = {Elsevier}, - volume = 48, - pages = {26--40}, - number = 1 -} - -@Article{wood2003thin, - title = {Thin-plate Regression Splines}, - author = {S. N. Wood}, - year = 2003, - journal = {Journal of the Royal Statistical Society (b)}, - volume = 65, - pages = {95--114}, - number = 1 -} - -@Article{wood2004stable, - title = {Stable and Efficient Multiple Smoothing Parameter Estimation for Generalized Additive Models}, - author = {S. N. Wood}, - year = 2004, - journal = {Journal of the American Statistical Association}, - volume = 99, - pages = {673--686}, - number = 467 -} - -@Book{wood2006generalized, - title = {Generalized Additive Models: An Introduction With R}, - author = {S.n Wood}, - year = 2006, - publisher = {Chapman and Hall/crc} -} - -@Article{wood2011fast, - title = {Fast Stable Restricted Maximum Likelihood and Marginal Likelihood Estimation of Semiparametric Generalized Linear Models}, - author = {S. N. Wood}, - year = 2011, - journal = {Journal of the Royal Statistical Society (b)}, - volume = 73, - pages = {3--36}, - number = 1 -} - -@Article{wood2012species, - title = {Species Composition and Cyanotoxin Production in Periphyton Mats From Three Lakes of Varying Trophic Status}, - author = {Wood, Susie A. and Kuhajek, Jeannie M. and De Winton, Mary and Phillips, Ngaire R.}, - year = 2012, - journal = {Fems Microbiology Ecology}, - volume = 79, - pages = {312--326}, - url = {http://dx.doi.org/10.1111/j.1574-6941.2011.01217.x}, - number = 2, - doi = {10.1111/j.1574-6941.2011.01217.x} -} - -@Article{wood2013straightforward, - title = {Straightforward Intermediate Rank Tensor Product Smoothing in Mixed Models}, - author = {Wood, Simon N. and Scheipl, Fabian and Faraway, Julian J.}, - year = 2013, - journal = {Statistics and Computing}, - volume = 23, - pages = {341--360}, - url = {http://dx.doi.org/10.1007/s11222-012-9314-z}, - number = 3, - doi = {10.1007/s11222-012-9314-z} -} - -@Book{woolf1968computation, - title = {On the Computation of Solar Elevation Angles and the Determination of Sunrise and Sunset Times}, - author = {Woolf, Harold M.}, - year = 1968, - publisher = {National Aeronautics and Space Administration} -} - -@Article{work1999factors, - title = {Factors Which Affect the Abundance of An Invasive Cladoceran, Daphnia Lumholtzi, in U.s. Reservoirs}, - author = {Work, Kirsten A. and Gophen, Moshe}, - year = 1999, - journal = {Freshwater Biology}, - publisher = {Blackwell Science Ltd}, - volume = 42, - pages = {1--10}, - url = {http://dx.doi.org/10.1046/j.1365-2427.1999.00449.x}, - number = 1, - doi = {10.1046/j.1365-2427.1999.00449.x} -} - -@Book{world2003guidelines, - title = {Guidelines for Safe Recreational Water Environments, Volume 1: Coastal and Fresh Waters}, - author = {World Health Organization}, - year = 2003, - publisher = {World Health Organization} -} - -@Article{wu1988differential, - title = {Differential Partitioning of Geosmin and 2-methylisoborneol Between Cellular Constituents in {{\textit{Oscillatoria tenuis}}}}, - author = {Wu, Jiuun-tzong and Jüttner, Friedrich}, - year = 1988, - journal = {Archives of Microbiology}, - publisher = {Springer-verlag}, - volume = 150, - pages = {580--583}, - url = {http://dx.doi.org/10.1007/bf00408253}, - language = {English}, - doi = {10.1007/bf00408253} -} - -@Article{wu1991variation, - title = {Variation of Geosmin Content in {{\textit{Anabaena}}} Cells and Its Relation to Nitrogen Utilization}, - author = {Wu, Jiunn-tzong and Ma, Pe-inn and Chou, Tsuan-lin}, - year = 1991, - journal = {Archives of Microbiology}, - volume = 157, - pages = {66--69}, - url = {http://dx.doi.org/10.1007/bf00245337}, - number = 1, - doi = {10.1007/bf00245337} -} - -@Article{wu2007hu, - title = {湖泊富营养化危害机理研究}, - author = {吴国平 and 郑丰 and 涂建锋}, - year = 2007, - journal = {水利水电快报}, - pages = {4--5}, - language = {Zh} -} - -@Article{wu2008zhong, - title = {中国水华蓝藻的新记录属——拟浮丝藻属({{\textit{Planktothricoides}}})}, - author = {吴忠兴 and 余博识 and 彭欣 and 虞功亮 and 覃家理 and 李仁辉}, - year = 2008, - volume = 2008, - pages = {461--465}, - journaltitle = {武汉植物学研究}, - number = 05 -} - -@Article{wu2009effects, - title = {Effects of Light and Wind Speed on the Vertical Distribution of {{\textit{Microcystis aeruginosa}}} Colonies of Different Sizes During A Summer Bloom}, - author = {Wu, Xiaodong and Kong, Fanxiang}, - year = 2009, - journal = {International Review of Hydrobiology}, - publisher = {Wiley-vch Verlag}, - volume = 94, - pages = {258--266}, - url = {http://dx.doi.org/10.1002/iroh.200811141}, - number = 3, - doi = {10.1002/iroh.200811141} -} - -@Article{wu2009spatial, - title = {Spatial Distribution of Benthic Algae in the Gangqu River, Shangrila, {China}}, - author = {Wu, Naicheng and Tang, Tao and Qu, Xiaodong and Cai, Qinghua}, - year = 2009, - journal = {Aquatic Ecology}, - publisher = {Springer Netherlands}, - volume = 43, - pages = {37--49}, - url = {http://dx.doi.org/10.1007/s10452-007-9153-8}, - language = {English}, - doi = {10.1007/s10452-007-9153-8} -} - -@Article{wu2009wo, - title = {我国淡水水华蓝藻-束丝藻属新记录种}, - author = {吴忠兴 and 虞功亮 and 施军琼 and 李仁辉}, - year = 2009, - volume = 33, - pages = {1140--1144}, - journaltitle = {水生生物学报}, - number = 06 -} - -@PhDThesis{wu2010wei, - title = {微囊藻毒素在环境样品中的检测及其在沉积物-水界面环境行为研究}, - author = {吴幸强 and 李仁辉}, - school = {中国科学院研究生院}, - year = 2010 -} - -@Article{wu2012zhong, - title = {中国淡水水体常见束丝藻种类的形态及生理特性研究}, - author = {吴忠兴 and 曾波 and 李仁辉 and 宋立荣}, - year = 2012, - volume = 36, - pages = {323--328}, - journaltitle = {水生生物学报}, - number = 02 -} - -@Article{wu2014seasonal, - title = {Seasonal Dynamics of Water Bloom-forming {{\textit{Microcystis}}} Morphospecies and the Associated Extracellular Microcystin Concentrations in Large, Shallow, Eutrophic {Dianchi Lake}}, - author = {Yanlong Wu and Lin Li and Nanqin Gan and Lingling Zheng and Haiyan Ma and Kun Shan and Jin Liu and Bangding Xiao and Lirong Song}, - year = 2014, - journal = {Journal of Environmental Sciences}, - volume = 26, - pages = {1921--1929}, - url = {http://www.sciencedirect.com/science/article/pii/S1001074214000771}, - number = 9, - doi = {10.1016/j.jes.2014.06.031} -} - -@Article{wu2018nan, - title = {南水北调来水对密云水库库滨带生态影响研究}, - author = {吴敬东 and 程金花 and 胡晓静 and 张耀方}, - year = 2018, - volume = 6, - pages = {6--8}, - journaltitle = {北京水务}, - language = {Zh} -} - -@Article{wuenscher1969niche, - title = {Niche Specification and Competition Modeling}, - author = {James E. Wuenscher}, - year = 1969, - journal = {Journal of Theoretical Biology}, - volume = 25, - pages = {436--443}, - url = {http://www.sciencedirect.com/science/article/pii/s0022519369800317}, - number = 3, - doi = {10.1016/s0022-5193(69)80031-7} -} - -@Article{wyatt2008benthic, - title = {Benthic Algal Response to Hyporheic-surface Water Exchange in An Alluvial River}, - author = {Wyatt, Kevinh. and Hauer, F.richard and Pessoney, Georgef.}, - year = 2008, - journal = {Hydrobiologia}, - publisher = {Springer Netherlands}, - volume = 607, - pages = {151--161}, - url = {http://dx.doi.org/10.1007/s10750-008-9385-1}, - language = {English}, - doi = {10.1007/s10750-008-9385-1} -} - -@InCollection{xia2007toward, - title = {Towards Better Water Security in North {China}}, - author = {Xia, Jun and Zhang, Lu and Liu, Changming and Yu, Jingjie}, - year = 2007, - booktitle = {Integrated Assessment of Water Resources and Global Change}, - publisher = {Springer Netherlands}, - pages = {233--247}, - url = {http://dx.doi.org/10.1007/978-1-4020-5591-1_15}, - language = {English}, - isbn = {978-1-4020-5590-4}, - doi = {10.1007/978-1-4020-5591-1_15} -} - -@Article{xia2008qi, - title = {Potential Impacts of Climate Change on Water Resources in {China}: Screening for Adaptation and Management}, - author = {Jun Xia and Lu Li and Maochao Yan and Jianting Chu}, - year = 2008, - journal = {Advances in Climate Change Research}, - volume = 04, - pages = {319--323}, - url = {http://en.cnki.com.cn/article_en/cjfdtotal-qhbh200804006.htm}, - number = 06 -} - -@Article{xiao2012heterogeneity, - title = {Heterogeneity of Buoyancy in Response to Light Between Two Buoyant Types of Cyanobacterium {{\textit{Microcystis}}}}, - author = {Xiao, Yan and Gan, Nanqin and Liu, Jin and Zheng, Lingling and Song, Lirong}, - year = 2012, - journal = {Hydrobiologia}, - publisher = {Springer Netherlands}, - volume = 679, - pages = {297--311}, - url = {http://dx.doi.org/10.1007/s10750-011-0894-y}, - language = {English}, - doi = {10.1007/s10750-011-0894-y} -} - -@PhDThesis{xiao2015ji, - title = {基于深度测序技术的蓝藻多样性及功能基因研究}, - author = {肖鹏 and 李仁辉}, - school = {中国科学院大学}, - year = 2015 -} - -@Article{xie1989cyanobacterial, - title = {Cyanobacterial Rna Polymerase Genes $rpoc_1$ and $rpoc_2$ Correspond to $rpoc$ of {{\textit{Escherichia Coli.}}}}, - author = {Xie, W Q and J{\"a}ger, K and Potts, M}, - year = 1989, - journal = {Journal of Bacteriology}, - volume = 171, - pages = {1967--1973}, - url = {http://jb.asm.org/content/171/4/1967.abstract}, - number = 4 -} - -@Article{xie2001practical, - title = {Practical Success of Biomanipulation Using Filter-feeding Fish to Control Cyanobacteria Blooms: A Synthesis of Decades of Research and Application in A Subtropical Hypereutrophic Lake}, - author = {Ping Xie and Jiankang Liu}, - year = 2001, - volume = 1, - pages = {337--356}, - journaltitle = {The Scientific World Journal}, - number = 1 -} - -@Article{xie2003enhancement, - title = {Enhancement of Dissolved Phosphorus Release From Sediment to Lake Water by {{\textit{Microcystis}}} Blooms-an Enclosure Experiment in A Hyper-eutrophic, Subtropical Chinese Lake}, - author = {L.q. Xie and P. Xie and H.j. Tang}, - year = 2003, - journal = {Environmental Pollution}, - volume = 122, - pages = {391--399}, - url = {http://www.sciencedirect.com/science/article/pii/s0269749102003056}, - number = 3, - doi = {10.1016/s0269-7491(02)00305-6} -} - -@PhDThesis{xie2019er, - title = {洱海浮游植物群落结构、建群机制及蓝藻水华预警研究}, - author = {王欢 and 谢平}, - school = {中国科学院大学}, - year = 2019 -} - -@PhDThesis{xing2007tie, - title = {铁对水华蓝藻的生态生理学效应研究}, - author = {邢伟 and 刘永定}, - school = {中国科学院研究生院}, - year = 2007 -} - -@Article{xing2007yang, - title = {洋河水库富营养化评价与防治对策}, - author = {邢光敏 and 赵艳珍 and 阎莹等}, - year = 2007, - journal = {水利渔业}, - volume = 27, - pages = {59--60}, - number = 06, - language = {Zh} -} - -@Article{xu2010nitrogen, - title = {Nitrogen and Phosphorus Inputs Control Phytoplankton Growth in Eutrophic {Lake Taihu}, {China}}, - author = {Xu, Hai and Paerl, Hans W and Qin, Boqiang and Zhu, Guangwei and Gao, Guang and Others}, - year = 2010, - journal = {Limnology and Oceanography}, - volume = 55, - pages = 420, - number = 1 -} - -@Article{xu2010relationship, - title = {Relationship Between Concentrations of Odorous Compounds and Biomass of Phytoplankton and Actinomycetes in Freshwater Ponds of Beijing, {China}}, - author = {Xu, Lipu and Xiong, Bangxi and Pan, Yong and Wang, Jingbo and Cao, Huan and Zhao, Wen}, - year = 2010, - journal = {Aquaculture International}, - publisher = {Springer Netherlands}, - volume = 18, - pages = {245--254}, - url = {http://dx.doi.org/10.1007/s10499-009-9240-z}, - number = 3, - doi = {10.1007/s10499-009-9240-z}, - language = {English} -} - -@Book{xu2012zhong, - title = {中国北方海区部分单胞藻的分离、培养及基因条码研究}, - author = {徐娜 and 逄少军}, - year = 2012, - publisher = {中国科学院研究生院}, - pages = {01--114}, - language = {Zh} -} - -@Article{yacobi2010carbon, - title = {Carbon:chlorophyll A Ratio, Assimilation Numbers and Turnover Times of Lake Kinneret Phytoplankton}, - author = {Yacobi, Yosefz. and Zohary, Tamar}, - year = 2010, - journal = {Hydrobiologia}, - publisher = {Springer Netherlands}, - volume = 639, - pages = {185--196}, - url = {http://dx.doi.org/10.1007/s10750-009-0023-3}, - language = {English}, - doi = {10.1007/s10750-009-0023-3} -} - -@Book{yamaji1966illustrations, - title = {Illustrations of the Marine Plankton of Japan}, - author = {Yamaji, I.}, - year = 1966, - publisher = {Hoikusha} -} - -@Article{yang2006seasonal, - title = {Seasonal Variation of Microcystin Concentration in {Lake Chaohu}, A Shallow Subtropical Lake in the People's Republic of {China}}, - author = {Yang, H. and Xie, P. and Xu, J. and Zheng, L. and Deng, D. and Zhou, Q. and Wu, S.}, - year = 2006, - month = {Sep}, - journal = {Bulletin of Environmental Contamination and Toxicology}, - volume = 77, - pages = {367--374}, - url = {https://doi.org/10.1007/s00128-006-1075-y}, - number = 3, - doi = {10.1007/s00128-006-1075-y} -} - -@Article{yang2008taihu, - title = {{Taihu Lake} Not to Blame for {Wuxi's Woes}}, - author = {Yang, Min and Yu, Jianwei and Li, Zonglai and Guo, Zhaohai and Burch, Michael and Lin, Tsair-fuh}, - year = 2008, - journal = {Science}, - volume = 319, - pages = 158, - url = {http://www.sciencemag.org/content/319/5860/158.1.short}, - number = 5860, - doi = {10.1126/science.319.5860.158a} -} - -@MastersThesis{yang2009fu, - title = {浮游性鱼腥藻的分类和分子系统研究}, - author = {杨丽 and 李仁辉}, - school = {中国科学院研究生院}, - year = 2009 -} - -@Article{yang2010analysis, - title = {Analysis of Spatial and Temporal Water Pollution Patterns in {Lake Dianchi} Using Multivariate Statistical Methods}, - author = {Yang, Yong-hui and Zhou, Feng and Guo, Huai-cheng and Sheng, Hu and Liu, Hui and Dao, Xu and He, Cheng-jie}, - year = 2010, - journal = {Environmental Monitoring and Assessment}, - publisher = {Springer Netherlands}, - volume = 170, - pages = {407--416}, - url = {http://dx.doi.org/10.1007/s10661-009-1242-9}, - language = {English}, - doi = {10.1007/s10661-009-1242-9} -} - -@Article{yang2012novel, - title = {A Novel Flushing Strategy for Diatom Bloom Prevention in the Lower-middle Hanjiang River}, - author = {Qiang Yang and Ping Xie and Hong Shen and Jun Xu and Peili Wang and Bin Zhang}, - year = 2012, - journal = {Water Research}, - volume = 46, - pages = {2525--2534}, - url = {http://www.sciencedirect.com/science/article/pii/s0043135412000838}, - number = 8, - doi = {10.1016/j.watres.2012.01.051} -} - -@Article{yang2015fang, - title = {防控支流库湾水华的三峡水库潮汐式生态调度可行性研究}, - author = {杨, 正健 and 刘, 德富 and 纪, 道斌 and 马, 骏}, - year = 2015, - journal = {水电能源科学}, - pages = {48--50}, - number = 33 -} - -@Article{yang2016decline, - title = {Decline in Water Level Boosts Cyanobacteria Dominance in Subtropical Reservoirs}, - author = {Jun Yang and Hong Lv and Jun Yang and Lemian Liu and Xiaoqing Yu and Huihuang Chen}, - year = 2016, - journal = {Science of the Total Environment}, - volume = {557-558}, - pages = {445--452}, - url = {http://www.sciencedirect.com/science/article/pii/s0048969716305186}, - doi = {10.1016/j.scitotenv.2016.03.094} -} - -@PhDThesis{yang2018la, - title = {拉氏拟柱孢藻对氮磷营养的响应及其生态优势研究}, - author = {杨祎明 and 李仁辉}, - school = {中国科学院大学}, - year = 2018 -} - -@Article{yao2017characterizing, - title = {Characterizing Vertical Migration of {{\textit{Microcystis aeruginosa}}} and Conditions for Algal Bloom Development Based on A Light-driven Migration Model}, - author = {Yao, Bo and Liu, Qingquan and Gao, Yong and Cao, Zhixian}, - year = 2017, - month = {Nov}, - journal = {Ecological Research}, - volume = 32, - pages = {961--969}, - url = {https://doi.org/10.1007/s11284-017-1505-9}, - number = 6, - doi = {10.1007/s11284-017-1505-9} -} - -@Article{yin1989wei, - title = {围隔中水华控制实验}, - author = {尹澄清 and 兰智文 and 金维根}, - year = 1989, - journal = {环境科学学报}, - volume = 9, - pages = {95--99}, - number = 1, - language = {Zh} -} - -@Article{yin2011development, - title = {Development of A Coupled Reservoir Operation and Water Diversion Model: Balancing Human and Environmental Flow Requirements}, - author = {X.a. Yin and Z.f. Yang}, - year = 2011, - journal = {Ecological Modelling}, - volume = 222, - pages = {224--231}, - url = {http://www.sciencedirect.com/science/article/pii/s030438001000325x}, - number = 2, - note = {Wetlands in {China}}, - doi = {10.1016/j.ecolmodel.2010.06.025} -} - -@Article{yin2017qing, - title = {青草沙水库中典型嗅味物质变化趋势调查研究}, - author = {殷一辰}, - year = 2017, - volume = 36, - pages = {4--8}, - journaltitle = {净水技术}, - number = {S1} -} - -@Article{yoshimura2012parameterization, - title = {Parameterization of Chlorophyll A-specific Absorption Coefficients and Effects of Their Variations in A Highly Eutrophic Lake: A Case Study At Lake Kasumigaura, Japan}, - author = {Yoshimura, Kazuya and Zaitsu, Nobuhiro and Sekimura, Yuta and Matsushita, Bunkei and Fukushima, Takehiko and Imai, Akio}, - year = 2012, - journal = {Hydrobiologia}, - publisher = {Springer Netherlands}, - volume = 691, - pages = {157--169}, - url = {http://dx.doi.org/10.1007/s10750-012-1066-4}, - number = 1, - doi = {10.1007/s10750-012-1066-4}, - language = {English} -} - -@Article{yoshizawa1990inhibition, - title = {Inhibition of Protein Phosphatases by {{\textit{Microcystis}}} and Nodularin Associated With Hepatotoxicity}, - author = {Yoshizawa, Shigeru and Matsushima, Rie and Watanabe, Mariyof. and Harada, Ken-ichi and Ichihara, Akira and Carmichael, Waynew. and Fujiki, Hirota}, - year = 1990, - journal = {Journal of Cancer Research and Clinical Oncology}, - publisher = {Springer-verlag}, - volume = 116, - pages = {609--614}, - url = {http://dx.doi.org/10.1007/bf01637082}, - number = 6, - doi = {10.1007/bf01637082}, - language = {English} -} - -@Article{young1996taste, - title = {Taste and Odour Threshold Concentrations of Potential Potable Water Contaminants}, - author = {W.f. Young and H. Horth and R. Crane and T. Ogden and M. Arnott}, - year = 1996, - journal = {Water Research}, - volume = 30, - pages = {331--340}, - url = {http://www.sciencedirect.com/science/article/pii/0043135495001735}, - number = 2, - doi = {10.1016/0043-1354(95)00173-5} -} - -@Article{young1999identification, - title = {Identification of A Woody-hay Odor-causing Compound in A Drinking Water Supply}, - author = {Young, C.c. and Suffet, I.h. and Crozes, G. and Bruchet, A.}, - year = 1999, - journal = {Water Science and Technology}, - volume = 40, - pages = {273--278}, - url = {http://www.ingentaconnect.com/content/els/02731223/1999/00000040/00000006/art00568}, - number = 6, - doi = {10.1016/s0273-1223(99)00568-5} -} - -@Article{yu2007effects, - title = {Effects of Surface Characteristics of Activated Carbon on the Adsorption of 2-methylisobornel ({MIB}) and Geosmin From Natural Water}, - author = {Jianwei Yu and Min Yang and Tsair-fuh Lin and Zhaohai Guo and Yu Zhang and Junnong Gu and Suxia Zhang}, - year = 2007, - journal = {Separation and Purification Technology}, - volume = 56, - pages = {363--370}, - url = {http://www.sciencedirect.com/science/article/pii/s1383586607001177}, - number = 3, - doi = {10.1016/j.seppur.2007.01.039} -} - -@Article{yu2007wu, - title = {无锡市饮用水嗅味突发事件致嗅原因及潜在问题分析}, - author = {于建伟 and 李宗来 and 曹楠 and 杨敏 and 丁建清 and 苗婷婷 and 张君枝}, - year = 2007, - journal = {环境科学学报}, - volume = 27, - pages = {1771--1777}, - number = 11, - language = {Zh} -} - -@Book{yu2008yin, - title = {饮用水中嗅味物质的识别和活性炭吸附研究}, - author = {于建伟 and 杨敏}, - year = 2007, - publisher = {中国科学院研究生院}, - language = {Zh} -} - -@Article{yu2009occurrence, - title = {{occurrence of Odour-causing Compounds in Different Source Waters of {China}}}, - author = {Yu, J. W. and Zhao, Y. M. and Yang, M. and Lin, Tsair-fuh and Guo, Z. H. and Gu, J. N. and Li, S. and Han, W.}, - year = 2009, - month = 12, - journal = {Journal of Water Supply: Research and Technology-aqua}, - volume = 58, - pages = {587--594}, - url = {https://doi.org/10.2166/aqua.2009.023}, - number = 8, - doi = {10.2166/aqua.2009.023} -} - -@Article{yu2011bu, - title = {不同营养源条件下螺旋鱼腥藻生长与产嗅特征研究}, - author = {于建伟 and 陈克云 and 苏命 and 杨敏 and 刘代成}, - year = 2011, - journal = {环境科学}, - volume = 32, - pages = {2254--2259}, - number = 8, - language = {Zh} -} - -@Article{yu2013quick, - title = {Quick Response to 2-{MIB} Episodes Based on Native Population Odor Sensitivity Evaluation}, - author = {Yu, Jianwei and An, Wei and Yang, Min and Gu, Junnong and Cao, Nan and Chen, Youjun}, - year = 2014, - journal = {Clean – Soil, Air, Water}, - volume = 42, - pages = {1179--1184}, - url = {http://dx.doi.org/10.1002/clen.201200716}, - number = 9, - doi = {10.1002/clen.201200716} -} - -@Article{yu2014quantitative, - title = {Quantitative Method to Determine the Regional Drinking Water Odorant Regulation Goals Based on Odor Sensitivity Distribution: Illustrated Using 2-{MIB}}, - author = {Jianwei Yu and Wei An and Nan Cao and Min Yang and Junong Gu and Dong Zhang and Ning Lu}, - year = 2014, - journal = {Journal of Environmental Sciences}, - volume = 26, - pages = {1389--1394}, - url = {http://www.sciencedirect.com/science/article/pii/s1001074214000114}, - number = 7, - doi = {10.1016/j.jes.2014.05.003} -} - -@Article{yu2014quick, - title = {Quick Response to 2-{MIB} Episodes Based on Native Population Odor Sensitivity Evaluation}, - author = {Yu, Jianwei and An, Wei and Yang, Min and Gu, Junnong and Cao, Nan and Chen, Youjun}, - year = 2014, - journal = {CLEAN – Soil, Air, Water}, - volume = 42, - pages = {1179--1184}, - url = {https://onlinelibrary.wiley.com/doi/abs/10.1002/clen.201200716}, - number = 9, - doi = {10.1002/clen.201200716}, - eprint = {https://onlinelibrary.wiley.com/doi/pdf/10.1002/clen.201200716} -} - -@Article{yu2015multiple, - title = {Multiple Linear Regression Model for Bromate Formation Based on the Survey Data of Source Waters From Geographically Different Regions Across {China}}, - author = {Yu, Jianwei and Liu, Juan and An, Wei and Wang, Yongjing and Zhang, Junzhi and Wei, Wei and Su, Ming and Yang, Min}, - year = 2015, - journal = {Environmental Science and Pollution Research}, - publisher = {Springer Berlin Heidelberg}, - volume = 22, - pages = {1232--1239}, - url = {http://dx.doi.org/10.1007/s11356-014-3423-5}, - number = 2, - doi = {10.1007/s11356-014-3423-5}, - language = {English} -} - -@Article{yu2015polyphasic, - title = {Polyphasic Characterization of Four Species of {{\textit{Pseudanabaena}}} (oscillatoriales, Cyanobacteria) From {China} and Insights Into Polyphyletic Divergence Within the {{\textit{Pseudanabaena}}} Genus}, - author = {Yu, Gongliang and Zhu, Mengling and Chen, Youxin and Pan, Qianqian and Chai, Wenbo and Li, Renhui}, - year = 2015, - journal = {Phytotaxa}, - volume = 192, - pages = {1--12}, - url = {https://www.biotaxa.org/phytotaxa/article/view/phytotaxa.192.1.1}, - doi = {10.11646/phytotaxa.192.1.1}, - number = 1 -} - -@Article{yu2016prediction, - title = {Prediction of Powdered Activated Carbon Doses for 2-{MIB} Removal in Drinking Water Treatment Using A Simplified Hsdm Approach}, - author = {Jianwei Yu and Fong-chen Yang and Wei-nung Hung and Chia-ling Liu and Min Yang and Tsair-fuh Lin}, - year = 2016, - journal = {Chemosphere}, - volume = 156, - pages = {374--382}, - url = {http://www.sciencedirect.com/science/article/pii/s0045653516306361}, - doi = {10.1016/j.chemosphere.2016.05.010} -} - -@Article{yuan2005simulating, - title = {Simulating Hydrologic Changes With Climate Change Scenarios in the Haihe River Basin}, - author = {Yuan, Fei and Xie, Zheng-hui and Liu, Qian and Xia, Jun}, - year = 2005, - journal = {Pedosphere}, - volume = 15, - pages = {595--600}, - number = 5 -} - -@Article{yuan2007miyun, - title = {密云水库微生物相变化对水质及嗅味的影响}, - author = {原媛 and 汪善全 and 竺建荣等}, - year = 2007, - journal = {环境科学研究}, - volume = 20, - pages = {08--13}, - number = 06, - language = {Zh} -} - -@Article{yuan2014classifying, - title = {Classifying Lakes to Improve Precision of Nutrient– Chlorophyll Relationships}, - author = {Yuan, Lester L. and Pollard, Amina I.}, - year = 2014, - journal = {Freshwater Science}, - volume = 33, - pages = {1184--1194}, - url = {https://doi.org/10.1086/678465}, - number = 4, - doi = {10.1086/678465}, - eprint = {https://doi.org/10.1086/678465} -} - -@PhDThesis{yuan2016san, - title = {三峡水库碱性磷酸酶活性与浮游植物的关系}, - author = {袁轶君 and 胡征宇}, - school = {中国科学院大学}, - year = 2016 -} - -@Article{yurkowski1980geosmin, - title = {Geosmin and 2-methylisoborneol Implicated As A Cause of Muddy Odor and Flavor in Commercial Fish From Cedar Lake, Manitoba}, - author = {Yurkowski, M and Tabachek, Jo-anne L}, - year = 1980, - journal = {Canadian Journal of Fisheries and Aquatic Sciences}, - publisher = {Nrc Research Press}, - volume = 37, - pages = {1449--1450}, - number = 9, - doi = {10.1139/f80-185} -} - -@Article{zaitlin2006actinomycetes, - title = {Actinomycetes in Relation to Taste and Odour in Drinking Water: Myths, Tenets and Truths}, - author = {Beryl Zaitlin and Susan B. Watson}, - year = 2006, - journal = {Water Research}, - volume = 40, - pages = {1741--1753}, - url = {http://www.sciencedirect.com/science/article/pii/s0043135406001096}, - number = 9, - doi = {10.1016/j.watres.2006.02.024} -} - -@Article{zamyadi2012fate, - title = {Fate of Toxic Cyanobacterial Cells and Disinfection By-products Formation After Chlorination}, - author = {Arash Zamyadi and Lionel Ho and Gayle Newcombe and Heriberto Bustamante and Mich{\`e}le Pr{\'e}vost}, - year = 2012, - journal = {Water Research}, - volume = 46, - pages = {1524--1535}, - url = {http://www.sciencedirect.com/science/article/pii/s0043135411003642}, - number = 5, - note = {Cyanobacteria: Impacts of Climate Change on Occurrence, Toxicity and Water Quality Management}, - doi = {10.1016/j.watres.2011.06.029} -} - -@Article{zapomelova2010polyphasic, - title = {Polyphasic Characterization of Eight Planktonic {{\textit{Anabaena}}} Strains (cyanobacteria) With Reference to the Variability of 61 {{\textit{Anabaena}}} Populations Observed in the Field}, - author = {Zapom{e\v}lov{a\'}, Eli{s\v}ka and {R\v}eh{a\'}kov{a\'}, Kl{a\'}ra and Jezberov{a\'}, Jitka and Kom{a\'}rkov{a\'}, Jaroslava}, - year = 2010, - journal = {Hydrobiologia}, - publisher = {Springer Netherlands}, - volume = 639, - pages = {99--113}, - url = {http://dx.doi.org/10.1007/s10750-009-0028-y}, - language = {English}, - doi = {10.1007/s10750-009-0028-y} -} - -@Book{zeng2005zao, - title = {藻类名词及名称}, - author = {曾呈奎 and 毕列爵 and 张宪孔 and 胡征宇}, - year = 2005, - url = {http://www.irgrid.ac.cn/handle/1471x/205256} -} - -@Article{zhang2002guan, - title = {关帝山神尾沟优势种生态位分析}, - author = {张桂莲 and 张金屯}, - year = 2002, - journal = {武汉植物学报}, - volume = 20, - pages = {203--208}, - number = 3, - language = {Zh} -} - -@Article{zhang2006miyun, - title = {密云水库水污染指标变化趋势分析}, - author = {张晓岚 and 陈哉君 and 温东辉}, - year = 2006, - journal = {环境保护}, - volume = 18, - pages = {63--65}, - language = {Zh} -} - -@Article{zhang2006zhi, - title = {植物化感作用在抑藻方面的研究进展}, - author = {张艳丽 and 芦鹏 and 吴晓芙}, - year = 2006, - journal = {环境科学与管理}, - volume = 31, - pages = {50--53}, - number = 7, - language = {Zh} -} - -@Article{zhang2007bioaccumulation, - title = {Bioaccumulation of the Hepatotoxic Microcystins in Various Organs of A Freshwater Snail From A Subtropical Chinese Lake, Taihu Lake, With Dense Toxic {{\textit{Microcystis}}} Blooms}, - author = {Zhang, Dawen and Xie, Ping and Liu, Yaqin and Chen, Jun and Liang, Gaodao}, - year = 2007, - journal = {Environmental Toxicology and Chemistry}, - publisher = {Wiley Periodicals, Inc.}, - volume = 26, - pages = {171--176}, - url = {http://dx.doi.org/10.1897/06-222r.1}, - number = 1, - doi = {10.1897/06-222r.1} -} - -@Article{zhang2007fen, - title = {粉末活性炭技术处理水中臭味物质的应用研究}, - author = {张素霞 and 马刚 and 郭强 and 于建伟 and 李涛 and 杨敏 and 王东升}, - year = 2007, - journal = {给水排水}, - volume = 33, - pages = {17--22}, - number = 09, - language = {Zh} -} - -@Article{zhang2007zao, - title = {藻类对供水水质的影响和防治对策}, - author = {张自秀 and 李典友 and 戴立文 and 章邦基}, - year = 2007, - journal = {安徽农学通报}, - volume = 13, - pages = {41--43}, - number = 6, - language = {Zh} -} - -@Article{zhang2008chang, - title = {长江中下游湖泊沉积物氮磷形态与释放风险关系}, - author = {张路 and 范成新 and 王建军等}, - year = 2008, - journal = {湖泊科学}, - volume = 20, - pages = {263--270}, - number = 03, - language = {Zh} -} - -@Article{zhang2009effects, - title = {Effects of Temperature and Light on the Growth and Geosmin Production of {{\textit{Lyngbya kuetzingii}}} (cyanophyta)}, - author = {Zhang, Ting and Li, Lin and Song, Lirong and Chen, Wei}, - year = 2009, - journal = {Journal of Applied Phycology}, - publisher = {Springer Netherlands}, - volume = 21, - pages = {279--285}, - url = {http://dx.doi.org/10.1007/s10811-008-9363-z}, - language = {English}, - doi = {10.1007/s10811-008-9363-z} -} - -@PhDThesis{zhang2010cheng, - title = {城市污染河流水质评价和预测模型研究}, - author = {张兰 and 刘永定}, - school = {中国科学院研究生院}, - year = 2010 -} - -@Book{zhang2010dian, - title = {典型水源消毒副产物生成特征及其预氧化强化去除}, - author = {张君枝 and 杨敏}, - year = 2010, - publisher = {中国科学院研究生院}, - language = {Zh} -} - -@Article{zhang2010lan, - title = {蓝藻伪空胞的特性及浮力调节机制}, - author = {张永生 and 孔繁翔 and 于洋 and 张民 and 史小丽}, - year = 2010, - journal = {生态学报}, - volume = 30, - pages = {5077--5090}, - number = 18, - language = {Zh} -} - -@Article{zhang2010water, - title = {The 2007 Water Crisis in Wuxi, {China}: Analysis of the Origin}, - author = {Xiao-jian Zhang and Chao Chen and Jian-qing Ding and Aixin Hou and Yong Li and Zhang-bin Niu and Xiao-yan Su and Yan-juan Xu and Edward A. Laws}, - year = 2010, - journal = {Journal of Hazardous Materials}, - volume = 182, - pages = {130--135}, - url = {http://www.sciencedirect.com/science/article/pii/s0304389410007454}, - number = 1, - doi = {10.1016/j.jhazmat.2010.06.006} -} - -@Article{zhang2011granular, - title = {Granular Activated Carbon (gac) Adsorption of Two Algal Odorants, Dimethyl Trisulfide and $\beta$-cyclocitral}, - author = {Kejia Zhang and Naiyun Gao and Yang Deng and Minghao Shui and Yulin Tang}, - year = 2011, - journal = {Desalination}, - volume = 266, - pages = {231--237}, - url = {http://dx.doi.org/10.1016/j.desal.2010.08.031}, - number = {1--3}, - doi = {10.1016/j.desal.2010.08.031} -} - -@Article{zhang2012yuan, - title = {原核生物中土霉味化合物二甲萘烷醇和2-甲基异茨醇生物合成研究进展}, - author = {张婷 and 李德亮 and 李杰}, - year = 2012, - volume = 52, - pages = {152--159}, - journaltitle = {微生物学报}, - number = 02 -} - -@Article{zhang2013characterization, - title = {Characterization of Typical Taste and Odor Compounds Formed by {{\textit{Microcystis aeruginosa}}}}, - author = {Kejia Zhang and Tsair Fuh Lin and Tuqiao Zhang and Cong Li and Naiyun Gao}, - year = 2013, - journal = {Journal of Environmental Sciences}, - volume = 25, - pages = {1539--1548}, - url = {http://www.sciencedirect.com/science/article/pii/s1001074212602320}, - number = 8, - doi = {10.1016/s1001-0742(12)60232-0} -} - -@Article{zhang2013microbial, - title = {Microbial Community Functional Structure In response to Antibiotics in Pharmaceutical Wastewater Treatment Systems}, - author = {Yu Zhang and Jianping Xie and Miaomiao Liu and Zhe Tian and Zhili He and Joy D. Van Nostrand and Liren Ren and Jizhong Zhou and Min Yang}, - year = 2013, - journal = {Water Research}, - volume = 47, - pages = {6298--6308}, - url = {http://www.sciencedirect.com/science/article/pii/s0043135413006234}, - number = 16, - doi = {10.1016/j.watres.2013.08.003} -} - -@Article{zhang2014nan, - title = {南水北调来水条件下北京市多水源联合调度模型研究}, - author = {章燕喃 and 田富强 and 胡宏昌 and 齐子超}, - year = 2014, - journal = {水利学报}, - volume = 45, - pages = {844--849}, - number = 7, - language = {Zh} -} - -@Article{zhang2015occurrence, - title = {Occurrence of Algae and Algae-related Taste and Odour (t\&o) Compounds in the Qingcaosha Reservoir, {China}}, - author = {Zhang, Kejia and Zhang, Tuqiao and Deng, Yang and Gao, Naiyun and Yang, Yulong}, - year = 2015, - journal = {Journal of Water Supply: Research and Technology - Aqua}, - publisher = {Iwa Publishing}, - volume = 64, - pages = {824--831}, - url = {http://aqua.iwaponline.com/content/64/7/824}, - number = 7, - doi = {10.2166/aqua.2015.072} -} - -@Article{zhang2016deterministic, - title = {Deterministic Diversity Changes in Freshwater Phytoplankton in the Yunnan–guizhou Plateau Lakes in {China}}, - author = {Min Zhang and Yang Yu and Zhen Yang and Fanxiang Kong}, - year = 2016, - journal = {Ecological Indicators}, - volume = 63, - pages = {273--281}, - url = {http://www.sciencedirect.com/science/article/pii/s1470160x15007220}, - doi = {10.1016/j.ecolind.2015.12.017} -} - -@Article{zhang2016methylisoborneol, - title = {2-methylisoborneol Production Characteristics of {{\textit{Pseudanabaena}}} {sp.} {FACHB 1277} Isolated From {Xionghe Reservoir}, {China}}, - author = {Zhang, Ting and Zheng, Lingling and Li, Lin and Song, Lirong}, - year = 2016, - journal = {Journal of Applied Phycology}, - pages = {1--10}, - url = {http://dx.doi.org/10.1007/s10811-016-0864-x}, - doi = {10.1007/s10811-016-0864-x} -} - -@Article{zhang2016spatial, - title = {Spatial and Seasonal Shifts in Bloom-forming Cyanobacteria in {Lake Chaohu:} Patterns and Driving Factors}, - author = {Zhang, Min and Zhang, Yuchao and Yang, Zhen and Wei, Lijun and Yang, Wenbin and Chen, Chao and Kong, Fanxiang}, - year = 2016, - journal = {Phycological Research}, - pages = {N/a--n/a}, - url = {http://dx.doi.org/10.1111/pre.12112}, - doi = {10.1111/pre.12112} -} - -@PhDThesis{zhang2017gao, - title = {高原湖泊水华蓝藻中的紫外吸收物质类菌胞素氨基酸（MAAs）的研究}, - author = {张航 and 李仁辉}, - school = {中国科学院大学}, - year = 2017 -} - -@PhDThesis{zhang2017lan, - title = {蓝细菌Synechococcus sp.PCC7002环境适应的多组学分析及其在生物工程学的应用探索}, - author = {张桂英 and 赵进东}, - school = {中国科学院大学}, - year = 2017 -} - -@PhDThesis{zhang2018tai, - title = {太湖蓝藻水华的宏基因组学研究}, - author = {张军毅}, - school = {东南大学}, - year = 2018 -} - -@Article{zhang2019liang, - title = {两株采自惠州的细鞘丝藻亚科(Leptolyngbyaceae)嗜热蓝细菌的分离鉴定及细胞组分分析}, - author = {张艳婷 and 江东 and 唐杰 and 雒义凡 and 梁园梅 and MD Mahfuzur R}, - volume = 46, - journaltitle = {微生物学通报}, - year = 2019, - number = 03 -} - -@PhDThesis{zhang2019wen, - title = {温度和硅在水库浮游硅藻优势种生长和演替过程中的作用}, - author = {张云 and 李敦海}, - school = {中国科学院大学}, - year = 2019 -} - -@Article{zhao2009liusuan, - title = {硫酸铜控藻对浮游植物群落的影响}, - author = {赵小丽 and 宋立荣 and 张小明}, - year = 2009, - volume = 33, - pages = {596--602}, - journaltitle = {水生生物学报}, - number = 04, - language = {Zh} -} - -@Article{zhao2010shui, - title = {水库藻类监测原理与方法分析}, - author = {赵孟绪}, - year = 2010, - journal = {广东水利水电}, - volume = 112, - pages = {61--63}, - number = 8, - language = {Zh} -} - -@Article{zhao2011estimation, - title = {Estimation of Water Clarity in Taihu Lake and Surrounding Rivers Using Landsat Imagery}, - author = {Dehua Zhao and Ying Cai and Hao Jiang and Delin Xu and Wenguang Zhang and Shuqing An}, - year = 2011, - journal = {Advances in Water Resources}, - volume = 34, - pages = {165--173}, - url = {http://www.sciencedirect.com/science/article/pii/s0309170810001545}, - number = 2, - doi = {10.1016/j.advwatres.2010.08.010} -} - -@Article{zhao2013fishy, - title = {A Fishy Odor Episode in A North {China} Reservoir: Occurrence, Origin, and Possible Odor Causing Compounds}, - author = {Yunyun Zhao and Jianwei Yu and Ming Su and Wei An and Min Yang}, - year = 2013, - journal = {Journal of Environmental Sciences}, - volume = 25, - pages = {2361--2366}, - url = {http://www.sciencedirect.com/science/article/pii/s1001074212603179}, - number = 12, - doi = {10.1016/s1001-0742(12)60317-9}, - other = {author3} -} - -@Article{zhao2019predicting, - title = {Predicting Cyanobacteria Bloom Occurrence in Lakes and Reservoirs Before Blooms Occur}, - author = {C.s. Zhao and N.f. Shao and S.t. Yang and H. Ren and Y.r. Ge and P. Feng and B.e. Dong and Y. Zhao}, - year = 2019, - journal = {Science of the Total Environment}, - volume = 670, - pages = {837--848}, - url = {http://www.sciencedirect.com/science/article/pii/s004896971931143x}, - doi = {10.1016/j.scitotenv.2019.03.161} -} - -@Article{zheng2007beijing, - title = {北京密云水库富营养化和微囊藻毒素污染水平初步调查分析}, - author = {郑和辉 and 钱城 and 邵兵等}, - year = 2007, - journal = {卫生研究}, - volume = 36, - pages = 01, - language = {Zh} -} - -@Article{zheng2007preliminary, - title = {Preliminary Survey on Water Eutrophication and Microcystins Level in Beijing {Miyun Reservoir}.}, - author = {Zheng, Hehui and Qian, Cheng and Shao, Bing and Zhu, Zhiqin}, - year = 2007, - journal = {Wei Sheng Yan Jiu = Journal of Hygiene Research}, - volume = 36, - pages = 75, - number = 1 -} - -@Article{zhong2011management, - title = {The Management of Undesirable Cyanobacteria Blooms in Channel Catfish Ponds Using A Constructed Wetland: Contribution to the Control of Off-flavor Occurrences}, - author = {Fei Zhong and Yunni Gao and Tao Yu and Yongyuan Zhang and Dong Xu and Enrong Xiao and Feng He and Qiaohong Zhou and Zhenbin Wu}, - year = 2011, - journal = {Water Research}, - volume = 45, - pages = {6479--6488}, - url = {http://www.sciencedirect.com/science/article/pii/s0043135411005744}, - number = 19, - doi = {10.1016/j.watres.2011.09.044} -} - -@Article{zhong2015zao, - title = {藻源臭味物质geosmin与2-{MIB}的生成途径及控制研究}, - author = {仲鑫 and 崔崇威}, - year = 2015, - volume = 51, - pages = {9--13}, - journaltitle = {给水排水}, - number = {S1} -} - -@Book{zhou2005dan, - title = {淡水微生物图谱}, - author = {周凤霞 and 陈建虹}, - year = 2005, - publisher = {化学工业出版社}, - language = {Zh} -} - -@Article{zhou2012shang, - title = {上海青草沙水库水质调查与评价}, - author = {周超 and 高乃云 and 赵世嘏 and 楚文海}, - year = 2012, - journal = {同济大学学报（自然科学版）}, - volume = 40, - number = 6, - language = {Zh} -} - -@Article{zhou2018combining, - title = {Combining Hydrogen Peroxide Addition With Sunlight Regulation to Control Algal Blooms}, - author = {Zhou, Qichao and Li, Lin and Huang, Licheng and Guo, Liangliang and Song, Lirong}, - year = 2018, - month = jan, - journal = {Environmental Science and Pollution Research}, - volume = 25, - pages = {2239--2247}, - language = {En}, - number = 3, - doi = {10.1007/s11356-017-0659-x} -} - -@Article{zhu2008influence, - title = {Influence of the South–north Water Diversion Project and the Mitigation Projects on the Water Quality of Han River}, - author = {Y.p. Zhu and H.p. Zhang and L. Chen and J.f. Zhao}, - year = 2008, - journal = {Science of the Total Environment}, - volume = 406, - pages = {57--68}, - url = {http://www.sciencedirect.com/science/article/pii/s0048969708008231}, - number = {1–2}, - doi = {10.1016/j.scitotenv.2008.08.008} -} - -@Article{zhu2008three, - title = {Three Gorges Dam and Its Impact on the Potential Transmission of Schistosomiasis in Regions Along the Yangtze River}, - author = {Zhu, Huai-min and Xiang, Shuo and Yang, Kun and Wu, Xiao-hua and Zhou, Xiao-nong}, - year = 2008, - journal = {Ecohealth}, - publisher = {Springer-verlag}, - volume = 5, - pages = {137--148}, - url = {http://dx.doi.org/10.1007/s10393-008-0168-y}, - number = 2, - doi = {10.1007/s10393-008-0168-y}, - language = {English} -} - -@PhDThesis{zhu2012si, - title = {丝状蓝藻假鱼腥藻和泽丝藻的分类学研究及分子监测}, - author = {朱梦灵 and 李仁辉}, - school = {中国科学院研究生院}, - year = 2012 -} - -@PhDThesis{zhu2018er, - title = {洱海浮游植物群落结构和微囊藻毒素动态变化研究}, - author = {朱荣 and 陈隽}, - school = {中国科学院大学}, - year = 2018 -} - -@Article{zhu2019zheng, - title = {正磷酸盐和硝酸盐对颤藻生长及产嗅特征的影响}, - author = {朱厚亚 and 刘波 and 张凌云 and 赵莉 and 张德明}, - year = 2019, - volume = 35, - pages = {50--55}, - journaltitle = {中国给水排水}, - number = 17 -} - -@Article{zhuang2000guang, - title = {光强和光质对底栖藻类群落影响ⅱ.群落和种群的动态和适应模 式}, - author = {庄树宏 and Hendrik Sven}, - year = 2001, - journal = {生态学报}, - volume = 21, - pages = {2057--2066}, - number = 12, - language = {Zh} -} - -@Article{zhuang2001chi, - title = {赤潮叉角藻18s Rdna 和its区序列测定与分析}, - author = {庄丽 and 陈月琴 and 李钦亮 and 屈良鹄}, - year = 2011, - journal = {海洋与湖沼}, - volume = 32, - pages = {148--153}, - number = 2, - language = {Zh} -} - -@Article{zhuang2015wei, - title = {微囊藻群体内生黏伪鱼腥藻荧光特征及空间分布}, - author = {庄惠如 and 黄祖芳 and 翁笑艳 and 卢玮 and 舒惠琳}, - year = 2015, - journal = {水声生物学报}, - volume = 39, - pages = {633--636}, - number = 3, - language = {Zh} -} - -@Article{zierler2004determination, - title = {Determination of Off-flavour Compounds in Apple Juice Caused by Microorganisms Using Headspace Solid Phase Microextraction–gas Chromatography–mass Spectrometry}, - author = {Zierler, Barbara and Siegmund, Barbara and Pfannhauser, W}, - year = 2004, - journal = {Analytica Chimica Acta}, - volume = 520, - pages = {3--11} -} - -@Article{zimba1999evaluating, - title = {Evaluating the Relationship Between Photopigment Synthesis and 2-methylisoborneol Accumulation in Cyanobacteria}, - author = {Zimba, Paul V. and Dionigi, Christopher P. and Millie, David F.}, - year = 1999, - journal = {Journal of Phycology}, - publisher = {Blackwell Publishing Ltd}, - volume = 35, - pages = {1422--1429}, - url = {http://dx.doi.org/10.1046/j.1529-8817.1999.3561422.x}, - number = 6, - doi = {10.1046/j.1529-8817.1999.3561422.x} -} - -@Article{zimmerman1995growth, - title = {Growth and 2-methylisoborneol Production by the Cyanobacterium {{\textit{Phormidium}}} Lm689}, - author = {W.j. Zimmerman and C.m. Soliman and B.h. Rosen}, - year = 1995, - journal = {Water Science and Technology}, - volume = 31, - pages = {181--186}, - url = {http://www.sciencedirect.com/science/article/pii/0273122395004742}, - number = 11, - note = {Off-flavours in the Aquatic Environment 1994}, - doi = {10.1016/0273-1223(95)00474-2} -} - -@Article{zohary2010foreword, - title = {Foreword}, - author = {Zohary, Tamar and Padisák, Judit and Naselli-flores, Luigi}, - year = 2010, - journal = {Hydrobiologia}, - publisher = {Springer Netherlands}, - volume = 639, - pages = {1--4}, - url = {http://dx.doi.org/10.1007/s10750-009-0012-6}, - language = {English}, - doi = {10.1007/s10750-009-0012-6} -} - -@Article{zohary2010phytoplankton, - title = {Phytoplankton in the Physical Environment: Beyond Nutrients, At the End, There Is Some Light}, - author = {Zohary, Tamar and Padis{\'a}k, Judit and Naselli-flores, Luigi}, - year = 2010, - journal = {Hydrobiologia}, - publisher = {Springer Netherlands}, - volume = 639, - pages = {261--269}, - url = {http://dx.doi.org/10.1007/s10750-009-0032-2}, - language = {English}, - doi = {10.1007/s10750-009-0032-2} -} - -@Article{zuo2010contribution, - title = {Contribution of {{\textit{Streptomyces}}} in Sediment to Earthy Odor in the Overlying Water in Xionghe Reservoir, {China}}, - author = {Zuo, Yexia and Li, Lin and Zhang, Ting and Zheng, Lingling and Dai, Gongyuan and Liu, Liming and Song, Lirong}, - year = 2010, - journal = {Water Research}, - publisher = {Elsevier}, - volume = 44, - pages = {6085--6094}, - number = 20, - doi = {10.1016/j.watres.2010.08.001} -} - -@Book{zuur2007analysing, - title = {Analysing Ecological Data}, - author = {Zuur, Alain F and Ieno, Elena N and Smith, Graham M}, - year = 2007, - publisher = {Springer New York}, - volume = 680 -} - -@Book{zuur2009mixed, - title = {Mixed Effects Models and Extensions in Ecology With R}, - author = {Zuur, Alain and Ieno, Elena N and Walker, Neil and Saveliev, Anatoly A and Smith, Graham M}, - year = 2009, - publisher = {Springer Science \& Business Media} -} - -@Article{xia2019multifactor, - title = {Multi-factor identification and modelling analyses for managing large river algal blooms}, - author = {Rui Xia and Yuan Zhang and Gangsheng Wang and Yongyong Zhang and Ming Dou and Xikang Hou and Yunfeng Qiao and Qiang Wang and Zhongwen Yang}, - year = 2019, - journal = {Environmental Pollution}, - volume = 254, - pages = 113056, - url = {http://www.sciencedirect.com/science/article/pii/S0269749119321475}, - doi = {10.1016/j.envpol.2019.113056} -} - -@article{bermanfrank2007nitrogenfixation, - title = {Nitrogen-Fixation Strategies and {{Fe}} Requirements in Cyanobacteria}, - author = {Berman-Frank, Ilana and Quigg, Antonietta and Finkel, Zoe V. and Irwin, Andrew J. and Haramaty, Liti}, - year = 2007, - journaltitle = {Limnology and Oceanography}, - shortjournal = {Limnology and Oceanography}, - volume = {52}, - pages = {2260--2269}, - publisher = {{John Wiley \& Sons, Ltd}}, - doi = {10.4319/lo.2007.52.5.2260}, - number = {5} -} - -@article{chen1998wei, - title = {微量元素对绿色巴夫藻生长的影响}, - author = {陈, 必链 and 施, 巧琴 and 林, 小建 and 吴, 松刚}, - year = 1998, - journaltitle = {福建师范大学学报(自然科学版)}, - pages = {83--87}, - number = {01} -} - -@article{chi2009tie, - title = {铁对藻类生长的影响及其光谱识别研究展望}, - author = {迟, 光宇 and 陈, 欣 and 史, 奕 and 郑, 太辉}, - year = 2009, - journaltitle = {光谱学与光谱分析}, - volume = {29}, - pages = {3344--3347}, - number = {12} -} - -@article{ferreira1994iron, - title = {Iron Deprivation in Cyanobacteria}, - author = {Ferreira, Fernando and Straus, Neil A.}, - year = {1994}, - journaltitle = {Journal of Applied Phycology}, - shortjournal = {J Appl Phycol}, - volume = {6}, - pages = {199--210}, - doi = {10.1007/BF02186073}, - number = {2} -} - -@article{gao1997ying, - title = {营养盐和微量元素与黄骅赤潮的相关性}, - author = {高, 素兰}, - year = 1997, - journaltitle = {黄渤海海洋}, - pages = {59--63}, - number = {02} -} - -@article{gonzalez2018challenge, - title = {The Challenge of Iron Stress in Cyanobacteria}, - author = {González, Andrés and Fillat, María F. and Bes, María-Teresa and Peleato, María-Luisa and Sevilla, Emma}, - year = 2018, - journaltitle = {Cyanobacteria}, - publisher = {IntechOpen}, - doi = {10.5772/intechopen.76720} -} - -@article{huang2009tie, - title = {铁锰微量元素对淡水藻类的生长影响研究}, - author = {黄, 振芳 and 刘, 昌明 and 刘, 波 and 崔, 丽凤}, - year = 2009, - journaltitle = {北京师范大学学报(自然科学版)}, - pages = {607--611} -} - -@incollection{kranzler2013iron, - title = {Iron in Cyanobacteria}, - booktitle = {Advances in Botanical Research}, - author = {Kranzler, Chana and Rudolf, Mareike and Keren, Nir and Schleiff, Enrico}, - year = 2013, - volume = {65}, - pages = {57--105}, - publisher = {{Academic Press}}, - doi = {10.1016/B978-0-12-394313-2.00003-2} -} - -@article{qi1991da, - title = {大鹏湾夜光藻种群动态的时间序列模型}, - author = {齐, 雨藻 and 黄, 伟建 and 邱, 璇鸿}, - year = 1991, - journaltitle = {暨南大学学报(自然科学与医学版)}, - pages = {96--103}, - number = {03} -} - -@article{shen1995zhong, - title = {中肋骨条藻（Skeletonemacostatum）赤潮发生过程中微量元素Fe、Mn作用的研究}, - author = {沈, 闳 and 洪, 君超 and 张, 开富 and 王, 挂兰 and 吕, 颂辉}, - year = 1995, - journaltitle = {暨南大学学报(自然科学与医学版)}, - pages = {131-136+149}, - number = {01} -} - -@article{yang2003fu, - title = {浮游植物增殖能力的研究探讨}, - author = {杨, 东方 and 高, 振会 and 孙, 培艳 and 李, 钦亮 and 陈, 立婧}, - year = 2003, - journaltitle = {海洋科学}, - pages = {19--21}, - number = {05} -} - -@mastersthesis{zhang2006wei, - title = {微量元素—锌、铁、锰对淡水浮游藻类增殖的影响}, - author = {张铁明}, - year = 2006, - school = {首都师范大学}, - type = {硕士} -} - -@article{hyenstrand1998factors, - title = {Factors Determining Cyanobacterial Success in Aquatic Systems: {{A}} Literature Review}, - shorttitle = {Factors Determining Cyanobacterial Success in Aquatic Systems}, - author = {Hyenstrand, Per and Blomqvist, Peter and Pettersson, Annette}, - year = 1998, - journaltitle = {Archiv für Hydrobiologie Spec. Iss. Advances in Limnology}, - volume = {51}, - pages = {41--62} -} - -@article{wang2013huan, - title = {环境因素对藻类生长竞争的影响}, - author = {王, 菁 and 陈, 家长 and 孟, 顺龙}, - year = 2013, - journal = {中国农学通报}, - pages = {52--56} -} - -@article{zhang2005bu, - title = {不同类型含磷营养物质对微小亚历山大藻(Alexandrium minutum)生长和毒素产生的影响}, - author = {张, 清春 and 于, 仁诚 and 周, 名江 and 王, 云峰 and 李, 钧 and 颜, 天}, - year = 2005, - journal = {海洋与湖沼}, - pages = {465--474}, - number = {05} -} - -@article{zhang2011effect, - title = {Effect of nitrogen to phosphorus ratios on cell proliferation in marine micro algae}, - author = {张, 青田 and 胡, 桂坤}, - year = 2011, - journal = {Chinese Journal of Oceanology and Limnology}, - pages = {739--745} -} - -@Article{lurling2013comparison, - title = {Comparison of Cyanobacterial and Green Algal Growth Rates at Different Temperatures}, - author = {Lürling, Miquel and Eshetu, Fassil and Faassen, Elisabeth J. and Kosten, Sarian and Huszar, Vera L. M.}, - year = 2013, - journal = {Freshwater Biology}, - volume = {58}, - pages = {552--559}, - doi = {10.1111/j.1365-2427.2012.02866.x}, - number = {3} -} - -@article{obrien2004disaggregation, - title = {Disaggregation of {{\textit{Microcystis aeruginosa}}} Colonies under Turbulent Mixing: Laboratory Experiments in a Grid-Stirred Tank}, - shorttitle = {Disaggregation of {{\textit{Microcystis aeruginosa}}} Colonies under Turbulent Mixing}, - author = {O’Brien, Katherine R. and Meyer, David L. and Waite, Anya M. and Ivey, Gregory N. and Hamilton, David P.}, - year = 2004, - journal = {Hydrobiologia}, - shortjournal = {Hydrobiologia}, - volume = {519}, - pages = {143--152}, - doi = {10.1023/B:HYDR.0000026501.02125.cf}, - number = {1-3} -} - -@Article{soares2012eutrophication, - title = {Eutrophication and retention time affecting spatial heterogeneity in a tropical reservoir}, - author = {Maria Carolina S. Soares and Marcelo M. Marinho and Sandra M.O.F. Azevedo and Christina W.C. Branco and Vera L.M. Huszar}, - year = 2012, - journal = {Limnologica}, - volume = 42, - pages = {197--203}, - url = {http://www.sciencedirect.com/science/article/pii/S0075951112000023}, - number = 3, - doi = {10.1016/j.limno.2011.11.002} -} - -@article{kong2005da, - author = {孔繁翔 and 高光}, - title = {大型浅水富营养化湖泊中蓝藻水华形成机理的思考}, - journaltitle = {生态学报}, - volume = {2005}, - number = {03}, - year = {2005}, - pages = {589--595} -} - -@Article{charalampous2018light, - title = {Light effects on phytoplankton morphometric traits influence nutrient utilization ability}, - author = {Charalampous, Evangelia and Matthiessen, Birte and Sommer, Ulrich}, - year = 2018, - month = 09, - journal = {Journal of Plankton Research}, - volume = 40, - pages = {568--579}, - url = {https://doi.org/10.1093/plankt/fby037}, - number = 5, - doi = {10.1093/plankt/fby037} -} - -@Article{damerval1991gas, - title = {Gas vesicle synthesis in the cyanobacterium {{\textit{Pseudanabaena}}} sp.: occurrence of a single photoregulated gene}, - author = {Damerval, T. and Castets, A.-M. and Houmard, J. and de Marsac, N. Tandeau}, - year = 1991, - journal = {Molecular Microbiology}, - volume = 5, - pages = {657--664}, - url = {https://onlinelibrary.wiley.com/doi/abs/10.1111/j.1365-2958.1991.tb00737.x}, - number = 3, - doi = {10.1111/j.1365-2958.1991.tb00737.x}, - eprint = {https://onlinelibrary.wiley.com/doi/pdf/10.1111/j.1365-2958.1991.tb00737.x} -} - -@Article{albouy2001gas, - title = {The Gas Vesicle Gene (gvp) Cluster of the Cyanobacterium {{\textit{Pseudanabaena}}} sp. Strain {PCC 6901}}, - author = {Delphine Albouy and Anne-Marie Castets and Nicole Tandeau De Marsac}, - year = 2001, - journal = {DNA Sequence}, - publisher = {Taylor & Francis}, - volume = 12, - pages = {337--344}, - url = {https://doi.org/10.3109/10425170109084457}, - number = {5-6}, - doi = {10.3109/10425170109084457}, - eprint = {https://doi.org/10.3109/10425170109084457} -} - -@Article{godo2017geosminproducing, - title = {Geosmin-producing Species of Coelosphaerium (Synechococcales, Cyanobacteria) in {Lake Shinji}, {Japan}}, - author = {Godo, T. and Saki, Y. and Nojiri, Y. and Tsujitani, M. and Sugahara, S. and Hayashi, S. and Kamiya, H. and Ohtani, S. and Seike, Y.}, - year = 2017, - month = {Feb}, - journal = {Scientific Reports}, - volume = 7, - pages = 41928, - url = {https://doi.org/10.1038/srep41928}, - number = 1, - doi = {10.1038/srep41928} -} - -@Article{muhetaer2020effects, - title = {Effects of Light Intensity and Exposure Period on the Growth and Stress Responses of Two Cyanobacteria Species: {{\textit{Pseudanabaena galeata}}} and {{\textit{Microcystis aeruginosa}}}}, - author = {Muhetaer, Guligena and Asaeda, Takashi and Jayasanka, Senavirathna M. D. H. and Baniya, Mahendra B. and Abeynayaka, Helayaye D. L. and Rashid, M. Harun and Yan, HongYu}, - year = 2020, - journal = {Water}, - volume = 12, - url = {https://www.mdpi.com/2073-4441/12/2/407}, - number = 2, - article-number = 407, - doi = {10.3390/w12020407} -} - -@PhDThesis{li2009bei, - title = {北方典型水库水源藻类种群动态和有害代谢物产生规律}, - author = {李宗来 and 杨敏}, - school = {中国科学院研究生院}, - year = 2009 -} - -@PhDThesis{yu2007yin, - title = {饮用水中嗅味物质的识别和活性炭吸附研究}, - author = {于建伟 and 杨敏}, - school = {中国科学院研究生院}, - year = 2007 -} - -@PhDThesis{jia2019study, - title = {水库型水源地产嗅藻生长驱动因子解析与调控研究}, - author = {贾泽宇 and 杨敏}, - school = {中国科学院大学}, - year = 2019 -} - -@Article{han2020assessing, - title = {Assessing the impact of source water on tap water bacterial communities in 46 drinking water supply systems in {China}}, - author = {Ziming Han and Wei An and Min Yang and Yu Zhang}, - year = 2020, - journal = {Water Research}, - volume = 172, - pages = 115469, - url = {http://www.sciencedirect.com/science/article/pii/S0043135420300051}, - doi = {10.1016/j.watres.2020.115469} -} - -@Article{liu2020prenatal, - title = {Prenatal and postnatal exposure risk assessment of chlorinated paraffins in mothers and neonates: Occurrence, congener profile, and transfer behavior}, - author = {Yingxue Liu and Muhammad Aamir and Mengying Li and Kai Liu and Yuhong Hu and Nian Liu and Yunfeng Xu and Jiyu Du and Jianrong Xu and Weiping Liu}, - year = 2020, - journal = {Journal of Hazardous Materials}, - pages = 122660, - url = {http://www.sciencedirect.com/science/article/pii/S030438942030649X}, - doi = {10.1016/j.jhazmat.2020.122660} -} - -@Article{lu2020evaluation, - title = {Evaluation of filamentous heterocystous cyanobacteria for integrated pig-farm biogas slurry treatment and bioenergy production}, - author = {Yuzhen Lu and Chen Zhuo and Yongjun Li and Huashou Li and Mengying Yang and Danni Xu and Hongzhi He}, - year = 2020, - journal = {Bioresource Technology}, - volume = 297, - pages = 122418, - url = {http://www.sciencedirect.com/science/article/pii/S0960852419316487}, - doi = {10.1016/j.biortech.2019.122418} -} - -@Article{lee2017the, - title = {The role of algae and cyanobacteria in the production and release of odorants in water}, - author = {Jechan Lee and Prabhat Kumar Rai and Young Jae Jeon and Ki-Hyun Kim and Eilhann E. Kwon}, - year = 2017, - journal = {Environmental Pollution}, - volume = 227, - pages = {252--262}, - url = {http://www.sciencedirect.com/science/article/pii/S0269749117302877}, - doi = {10.1016/j.envpol.2017.04.058} -} - -@Article{dietrich2015critical, - title = {Critical Review and Rethinking of USEPA Secondary Standards for Maintaining Organoleptic Quality of Drinking Water}, - author = {Dietrich, Andrea M. and Burlingame, Gary A.}, - year = 2015, - month = {Jan}, - journal = {Environmental Science {\&} Technology}, - publisher = {American Chemical Society}, - volume = 49, - pages = {708--720}, - url = {https://doi.org/10.1021/es504403t}, - number = 2, - doi = {10.1021/es504403t} -} - -@Article{xiao2019responses, - title = {Responses of marine phytoplankton communities to environmental changes: New insights from a niche classification scheme}, - author = {Wupeng Xiao and Edward A. Laws and Yuyuan Xie and Lei Wang and Xin Liu and Jixin Chen and Bingzhang Chen and Bangqin Huang}, - year = 2019, - journal = {Water Research}, - volume = 166, - pages = 115070, - url = {http://www.sciencedirect.com/science/article/pii/S0043135419308449}, - doi = {10.1016/j.watres.2019.115070} -} - -@Article{qian2016effects, - title = {Effects of water level fluctuation on phytoplankton succession in Poyang Lake, {China} – A five year study}, - author = {Kuimei Qian and Xia Liu and Yuwei Chen}, - year = 2016, - journal = {Ecohydrology & Hydrobiology}, - volume = 16, - pages = {175--184}, - url = {http://www.sciencedirect.com/science/article/pii/S1642359316300234}, - number = 3, - doi = {10.1016/j.ecohyd.2016.08.001} -} - -@Article{wang2020succession, - title = {Succession of phytoplankton functional groups in Macau’s two shallow urban border reservoirs under multiple changing factors}, - author = {Yijie Wang and Yanpeng Cai and Xinan Yin and Zhifeng Yang}, - year = 2020, - journal = {Journal of Cleaner Production}, - volume = 264, - pages = 121553, - url = {http://www.sciencedirect.com/science/article/pii/S0959652620316000}, - doi = {10.1016/j.jclepro.2020.121553} -} - -@InCollection{pardo1998thermal, - title = {Thermal stabilization by its ligands of NADP+-isocitrate dehydrogenase from the thermophilic cyanobacterium Phormidium laminosum**Supported by grants (DGICYT PB95-0509 and DGES PB96-1471) from the Spanish Ministry of Education and Culture. M. A.P. is the recipient of a scholarship from the Basque Government.}, - author = {Miguel A. Pardo and María J. Llama and Juan L. Serra}, - year = 1998, - booktitle = {Stability and Stabilization of Biocatalysts}, - publisher = {Elsevier}, - volume = 15, - pages = {229--234}, - url = {http://www.sciencedirect.com/science/article/pii/S092104239880035X}, - doi = {10.1016/S0921-0423(98)80035-X} -} - -@article{tian2020dan, - author = {田晓萌 and 裴海燕 and 徐杭州 and 张艳芳 and 韦洁琳}, - title = {淡水有害底栖蓝藻研究进展}, - journaltitle = {生态学杂志}, - volume = {2020}, - number = {1}, - year = {2020}, - doi = {10.13292/j.1000-4890.202006.031}, - pages = {1-21} -} - -@mastersthesis{li2019yin, - author = {李璐玮}, - title = {饮用水中醛类特征嗅味物质的氧化去除技术研究}, - school = {北京建筑大学}, - year = {2019} -} - -@article{dai2014yi, - author = {代志刚 and 蒋永光 and 谷依露 and 胡晗华 and 李仁辉}, - title = {异味物质β-环柠檬醛降解菌的分离和鉴定}, - journaltitle = {水生生物学报}, - volume = {38}, - number = {02}, - year = {2014}, - pages = {222--226} -} - - -@PhDThesis{sun2012yin, - title = {饮用水嗅味评价与致嗅物质识别研究}, - author = {孙道林 and 杨敏}, - school = {中国科学院研究生院}, - year = 2012 -} - - -@mastersthesis{liu2017lan, - author = {刘宪圣}, - title = {蓝藻聚积衰亡过程中β-环柠檬醛和β-紫罗兰酮释放特征}, - school = {南京师范大学}, - year = {2017} -} - - -@article{deng2013dong, - author = {邓绪伟 and 陶敏 and 张路 and 谢平 and 陈隽 and 张静}, - title = {洞庭湖水体异味物质及其与藻类和水质的关系}, - journaltitle = {环境科学研究}, - volume = {26}, - number = {01}, - year = {2013}, - pages = {16--21} -} - -@Article{scherzinger2008in, - title = {In vitro characterization of a carotenoid cleavage dioxygenase from {{\textit{Nostoc}}} sp. {PCC 7120} reveals a novel cleavage pattern, cytosolic localization and induction by highlight}, - author = {Scherzinger, Daniel and Al-Babili, Salim}, - year = 2008, - journal = {Molecular Microbiology}, - volume = 69, - pages = {231--244}, - url = {https://onlinelibrary.wiley.com/doi/abs/10.1111/j.1365-2958.2008.06282.x}, - number = 1, - doi = {10.1111/j.1365-2958.2008.06282.x}, - eprint = {https://onlinelibrary.wiley.com/doi/pdf/10.1111/j.1365-2958.2008.06282.x} -} - -@PhDThesis{deng2013chang, - title = {常见异味物质检测技术开发与东部平原湖泊异味物质研究}, - author = {邓绪伟 and 谢平}, - school = {中国科学院大学}, - year = 2013 -} - - -@article{chen2019chu, - author = {陈思莉 and 邴永鑫 and 常莎 and 虢清伟 and 张政科 and 姚玲爱 and 梁荣昌 and 曾圣科}, - title = {除藻剂应急治理湖水蓝藻水华案例分析}, - journaltitle = {中国农村水利水电}, - volume = {2019}, - number = {03}, - year = {2019}, - pages = {20--23} -} - -@Article{mugnai2018the, - title = {The potential of the cyanobacterium Leptolyngbya ohadii as inoculum for stabilizing bare sandy substrates}, - author = {Gianmarco Mugnai and Federico Rossi and Vincent John [Martin Noah Linus Felde] and Claudia Colesie and Burkhard Büdel and Stephan Peth and Aaron Kaplan and Roberto [De Philippis]}, - year = 2018, - journal = {Soil Biology and Biochemistry}, - volume = 127, - pages = {318--328}, - url = {http://www.sciencedirect.com/science/article/pii/S0038071718302608}, - doi = {10.1016/j.soilbio.2018.08.007} -} - -@inproceedings{straskraba1999retention, - address = {S\^{$\sim$}ao Pedro, Brazil}, - title = {Retention Time as a Key Variable of Reservoir Limnology}, - isbn = {85-87418-02-5}, - language = {English}, - booktitle = {Theoretical Reservoir Ecology and Its Applications}, - publisher = {{International Institute of Ecology [u.a.]}}, - author = {Straskraba, M}, - year = {1999}, - pages = {385-410} -} - -@incollection{nichols1973growth, - address = {Cambridge}, - title = {Growth Media\textendash{}Freshwater}, - booktitle = {Handbook of Phycological Methods: Culture Methods and Growth Measurements}, - publisher = {{Cambridge University Press}}, - author = {Nichols, HW}, - year = {1973}, - pages = {8-24} -} - -@article{lorenzen1966method, - title = {A Method for the Continuous Measurement of in Vivo Chlorophyll Concentration}, - volume = {13}, - number = {2}, - journal = {Deep Sea Research and Oceanographic Abstracts}, - doi = {10/dm5vbm}, - author = {Lorenzen, Carl J}, - month = apr, - year = {1966}, - pages = {223-227} -} - -@article{bertone2018fluorescence, - title = {Fluorescence Probes for Real-Time Remote Cyanobacteria Monitoring: A Review of Challenges and Opportunities}, - volume = {141}, - shorttitle = {Fluorescence Probes for Real-Time Remote Cyanobacteria Monitoring}, - journal = {Water Research}, - doi = {10/gdzhmn}, - author = {Bertone, Edoardo and Burford, Michele A. and Hamilton, David P.}, - month = sep, - year = {2018}, - pages = {152-162} -} - -@article{chang2012measurement, - title = {Measurement of Cyanobacteria Using In-Vivo Fluoroscopy - Effect of Cyanobacterial Species, Pigments, and Colonies}, - volume = {46}, - number = {16}, - journal = {Water Research}, - doi = {10.1016/j.watres.2012.06.050}, - author = {Chang, De-Wei and Hobson, Peter and Burch, Michael and Lin, Tsair-Fuh}, - month = oct, - year = {2012}, - pages = {5037-5048} -} - -@article{teale1970isolation, - title = {Isolation and Spectral Characterization of Phycobiliproteins}, - volume = {116}, - language = {en}, - number = {2}, - journal = {Biochemical Journal}, - doi = {10/gf6dmz}, - author = {Teale, F. W. J. and Dale, R. E.}, - month = jan, - year = {1970}, - pages = {161-169} -} - -@book{rcoreteam2017language, - address = {Vienna, Austria}, - title = {R: A Language and Environment for Statistical Computing}, - publisher = {R Foundation for Statistical Computing}, - author = {R Core Team}, - year = {2017} -} - -@misc{deltare2016delft3dflow, - title = {Delft3D-FLOW}, - author = {Deltare}, - month = dec, - year = {2016} -} - -@article{delhez2001integrated, - title = {Integrated Modelling of the Belgian Coastal Zone}, - volume = {53}, - language = {en}, - number = {4}, - journal = {Estuarine, Coastal and Shelf Science}, - doi = {10/c97vm6}, - author = {Delhez, E.J.M. and Carabin, G.}, - month = oct, - year = {2001}, - pages = {477-491} -} - -@PhDThesis{liu2019di, - title = {低温产嗅藻生长特征及嗅味物质产生规律研究}, - author = {刘婷婷 and 杨敏}, - school = {中国科学院大学}, - year = 2019 -} - -@phdthesis{li2005dan, - author = {李林}, - title = {淡水水体中藻源异味化合物的分布、动态变化与降解研究}, - school = {中国科学院研究生院（水生生物研究所）}, - year = {2005} -} - -@Article{palansooriya2020occurrence, - title = {Occurrence of contaminants in drinking water sources and the potential of biochar for water quality improvement: A review}, - author = {Kumuduni Niroshika Palansooriya and Yi Yang and Yiu Fai Tsang and Binoy Sarkar and Deyi Hou and Xinde Cao and Erik Meers and Jörg Rinklebe and Ki-Hyun Kim and Yong Sik Ok}, - year = 2020, - journal = {Critical Reviews in Environmental Science and Technology}, - publisher = {Taylor & Francis}, - volume = 50, - pages = {549--611}, - url = {https://doi.org/10.1080/10643389.2019.1629803}, - number = 6, - doi = {10.1080/10643389.2019.1629803} -} - -@Article{yu2018functional, - title = {Functional recognition of structure-diverse odor molecules in drinking water based on QSOR study}, - author = {Jianwei Yu and Li Zhang and Ying Zhang and Wei An and Qingyuan Guo and Yu Zhao and Min Yang}, - year = 2018, - journal = {Chemosphere}, - volume = 211, - pages = {371--378}, - url = {http://www.sciencedirect.com/science/article/pii/S0045653518314140}, - doi = {10.1016/j.chemosphere.2018.07.149} -} - -@Article{wang2020projecting, - title = {Projecting competition between 2-methylisoborneol and natural organic matter in adsorption onto activated carbon from ozonated source waters}, - author = {Qi Wang and Frederik Zietzschmann and Jianwei Yu and Roberta Hofman and Wei An and Min Yang and Luuk C. Rietveld}, - year = 2020, - journal = {Water Research}, - volume = 173, - pages = 115574, - url = {http://www.sciencedirect.com/science/article/pii/S004313542030110X}, - doi = {10.1016/j.watres.2020.115574} -} - -@article{zhang2016tai, - author = {张艳会 and 李伟峰 and 陈求稳}, - title = {太湖水华程度及其生态环境因子的时空分布特征}, - journaltitle = {生态学报}, - volume = {36}, - number = {14}, - year = {2016}, - pages = {4337--4345} -} - -@article{fang2019ji, - author = {方宇媛 and 徐正韵 and 谢海宾 and 石梦琴 and 李迎澳 and 李天贵}, - title = {基于主成分分析及单因子指数法的青通河水质评价}, - journaltitle = {池州学院学报}, - volume = {33}, - number = {06}, - year = {2019}, - pages = {46--48} -} - -@article{chen2020mou, - author = {陈志文 and 徐亚楠 and 苏命 and 侯伟昳 and 徐晓庆 and 于建伟 and 贾泽宇 and 杨敏}, - title = {某水源水库嗅味来源及潜在产嗅藻分布特征解析}, - journaltitle = {环境工程学报}, - volume = {2020}, - number = {}, - year = {2020}, - pages = {1-10} -} - -@article{komarek2007phenotype, - title = {Phenotype diversity of the cyanobacterial genus Leptolyngbya in the maritime Antarctic}, - author = {Kom{\'a}rek, Jiř{\'\i}}, - journal = {Polish Polar Research}, - pages = {211--231}, - year = {2007}, - publisher = {Polish Academy of Sciences} -} - - -@article{xu2020ji, - author = {徐晓庆 and 苏命 and 朱宜平 and 崔长征 and MD Suruzzaman and 徐亚楠 and 于建伟 and 杨敏}, - title = {基于荧光定量PCR技术构建水源地典型致嗅物质2-甲基异莰醇的评估方法及其应用}, - journaltitle = {环境工程学报}, - volume = {-}, - number = {-}, - year = {2020}, - url = {http://kns.cnki.net/kcms/detail/11.5591.X.20200526.0933.004.html}, - pages = {1-13} -} - -@Article{tsakalakis2018diel, - title = {Diel light cycle as a key factor for modelling phytoplankton biogeography and diversity}, - author = {Ioannis Tsakalakis and Markus Pahlow and Andreas Oschlies and Bernd Blasius and Alexey B. Ryabov}, - year = 2018, - journal = {Ecological Modelling}, - volume = 384, - pages = {241--248}, - url = {http://www.sciencedirect.com/science/article/pii/S0304380018302278}, - doi = {10.1016/j.ecolmodel.2018.06.022} -} - -@Article{domingues2011light, - title = {Light as a driver of phytoplankton growth and production in the freshwater tidal zone of a turbid estuary}, - author = {Rita B. Domingues and Tânia P. Anselmo and Ana B. Barbosa and Ulrich Sommer and Helena M. Galvão}, - year = 2011, - journal = {Estuarine, Coastal and Shelf Science}, - volume = 91, - pages = {526--535}, - url = {http://www.sciencedirect.com/science/article/pii/S0272771410004087}, - number = 4, - doi = {10.1016/j.ecss.2010.12.008} -} - -@Article{reynolds1998what, - title = {What factors influence the species composition of phytoplankton in lakes of different trophic status?}, - author = {Reynolds, C. S.}, - year = 1998, - journal = {Hydrobiologia}, - volume = 369, - pages = {11--26}, - url = {https://doi.org/10.1023/A:1017062213207}, - number = 0, - doi = {10.1023/A:1017062213207} -} - -@Article{litchman1998population, - title = {Population and community responses of phytoplankton to fluctuating light}, - author = {Litchman, Elena}, - year = 1998, - month = {Nov}, - journal = {Oecologia}, - volume = 117, - pages = {247--257}, - url = {https://doi.org/10.1007/s004420050655}, - number = 1, - doi = {10.1007/s004420050655} -} - -@Article{pritchard2013survival, - title = {Survival in low light: Photosynthesis and growth of a red alga in relation to measured in situ irradiance}, - author = {Pritchard, D.W. and Hurd, C.L. and Beardall, J. and Hepburn, C.D.}, - year = 2013, - journal = {Journal of Phycology}, - volume = 49, - pages = {867--879}, - url = {https://www.scopus.com/inward/record.uri?eid = 2-s2.0-84884986192&doi = 10.1111%2fjpy.12093&partnerID = 40&md5 = d2396894f015b2cd639191c323d5289c}, - number = 5, - doi = {10.1111/jpy.12093}, - note = {cited By 13}, - document_type = {Article} -} - -@Article{ahlgren1978growth, - title = {Growth of {{\textit{Oscillatoria agardhii}}} in chemostat culture 2. Dependence of growth constants on temperature}, - author = {Gunnel Ahlgren}, - year = 1978, - journal = {SIL Communications, 1953-1996}, - publisher = {Taylor & Francis}, - volume = 21, - pages = {88--102}, - url = {https://doi.org/10.1080/05384680.1978.11903954}, - number = 1, - doi = {10.1080/05384680.1978.11903954}, - eprint = {https://doi.org/10.1080/05384680.1978.11903954} -} - -@Article{foy1983interaction, - title = {Interaction of temperature and light on the growth rates of two planktonic {{\textit{Oscillatoria}}} species under a short photoperiod regime}, - author = {R.H. Foy}, - year = 1983, - journal = {British Phycological Journal}, - publisher = {Taylor & Francis}, - volume = 18, - pages = {267--273}, - url = {https://doi.org/10.1080/00071618300650281}, - number = 3, - doi = {10.1080/00071618300650281}, - eprint = {https://doi.org/10.1080/00071618300650281} -} - -@Article{ahlgren1977growth, - title = {Growth of {{\textit{Oscillatoria agardhii}}} in Chemostat Culture: 1. Nitrogen and Phosphorus Requirements}, - author = {G. Ahlgren}, - year = 1977, - journal = {Oikos}, - publisher = {[Nordic Society Oikos, Wiley]}, - volume = 29, - pages = {209--224}, - url = {http://www.jstor.org/stable/3543605}, - number = 2 -} - -@Article{liu2015differences, - title = {Differences in nutrient uptake capacity of the benthic filamentous algae {{\textit{Cladophora}}} sp., {{\textit{Klebsormidium}}} sp. and {{\textit{Pseudanabaena}}} sp. under varying {N/P} conditions}, - author = {Junzhuo Liu and Wim Vyverman}, - year = 2015, - journal = {Bioresource Technology}, - volume = 179, - pages = {234--242}, - url = {http://www.sciencedirect.com/science/article/pii/S0960852414017659}, - doi = {10.1016/j.biortech.2014.12.028} -} - -@Article{aerl1988nuisance, - title = {Nuisance phytoplankton blooms in coastal, estuarine, and inland waters1}, - author = {Paerl, Hans W.}, - year = 1988, - journal = {Limnology and Oceanography}, - volume = 33, - pages = {823--843}, - url = {https://aslopubs.onlinelibrary.wiley.com/doi/abs/10.4319/lo.1988.33.4part2.0823}, - number = {4part2}, - doi = {10.4319/lo.1988.33.4part2.0823}, - eprint = {https://aslopubs.onlinelibrary.wiley.com/doi/pdf/10.4319/lo.1988.33.4part2.0823} -} - -@Article{paerl1900harmful, - title = {Harmful Freshwater Algal Blooms, With an Emphasis on Cyanobacteria}, - author = {Paerl, Hans W. and Fulton, Rolland S. and Moisander, Pia H. and Dyble, Julianne}, - year = 1900, - month = {Jan}, - journal = {The Scientific World Journal}, - publisher = {The Scientific World Journal}, - volume = 1, - pages = 139109, - url = {https://doi.org/10.1100/tsw.2001.16}, - doi = {10.1100/tsw.2001.16} -} - -@InBook{grossman1994the, - title = {The Responses of Cyanobacteria to Environmental Conditions: Light and Nutrients}, - author = {Grossman, Arthur R. and Schaefer, Michael R. and Chiang, Gisela G. and Collier, Jackie L.}, - year = 1994, - booktitle = {The Molecular Biology of Cyanobacteria}, - publisher = {Springer Netherlands}, - pages = {641--675}, - url = {https://doi.org/10.1007/978-94-011-0227-8_21}, - address = {Dordrecht}, - isbn = {978-94-011-0227-8}, - doi = {10.1007/978-94-011-0227-8_21} -} - -@Article{smith1983low, - title = {Low Nitrogen to Phosphorus Ratios Favor Dominance by Blue-Green Algae in Lake Phytoplankton}, - author = {SMITH, VAL H.}, - year = 1983, - journal = {Science}, - publisher = {American Association for the Advancement of Science}, - volume = 221, - pages = {669--671}, - url = {https://science.sciencemag.org/content/221/4611/669}, - number = 4611, - doi = {10.1126/science.221.4611.669} -} - -@Article{schindler1977evolution, - title = {Evolution of Phosphorus Limitation in Lakes}, - author = {Schindler, D. W.}, - year = 1977, - month = {2020/08/06/}, - journal = {Science}, - publisher = {American Association for the Advancement of Science}, - volume = 195, - pages = {260--262}, - url = {www.jstor.org/stable/1743244}, - number = 4275, - note = {Full publication date: Jan. 21, 1977} -} - -@Article{berger1989in, - title = {In situ primary production, biomass and light regime in the Wolderwijd, the most stable {{\textit{Oscillatoria agardhii}}} lake in {The Netherlands}}, - author = {Berger, C.}, - year = 1989, - month = {Nov}, - journal = {Hydrobiologia}, - volume = 185, - pages = {233--244}, - url = {https://doi.org/10.1007/BF00036611}, - number = 3, - doi = {10.1007/BF00036611} -} - -@Article{vanduin1995light, - title = {Light adaptation of {{\textit{Oscillatoria agardhii}}} at different time scales}, - author = {Elisabeth H.S. {van Duin} and R. Hans Aalderink and Lambertus Lijklema}, - year = 1995, - journal = {Water Science and Technology}, - volume = 32, - pages = {35--48}, - url = {http://www.sciencedirect.com/science/article/pii/027312239500677X}, - number = 4, - note = {Selection Mechanisms Controlling Biomass Distribution}, - doi = {10.1016/0273-1223(95)00677-X} -} - -@Article{cromar1997effect, - title = {Effect of nutrient loading and retention time on performance of high rate algal ponds}, - author = {Cromar, Nancy J. and Fallowfield, Howard J.}, - year = 1997, - month = {Aug}, - journal = {Journal of Applied Phycology}, - volume = 9, - pages = {301--309}, - url = {https://doi.org/10.1023/A:1007917610508}, - number = 4, - doi = {10.1023/A:1007917610508} -} - -@Article{solimeno2019microalgae, - title = {Microalgae and bacteria dynamics in high rate algal ponds based on modelling results: Long-term application of BIO_ALGAE model}, - author = {Alessandro Solimeno and Joan García}, - year = 2019, - journal = {Science of The Total Environment}, - volume = 650, - pages = {1818--1831}, - url = {http://www.sciencedirect.com/science/article/pii/S0048969718338142}, - doi = {10.1016/j.scitotenv.2018.09.345} -} - -@article{webster2000management, -author = {Webster, Ian T. and Sherman, Bradford S. and Bormans, Myriam and Jones, Gary}, -title = {Management strategies for cyanobacterial blooms in an impounded lowland river}, -journal = {Regulated Rivers: Research \& Management}, -volume = {16}, -number = {5}, -pages = {513-525}, -doi = {10.1002/1099-1646(200009/10)16:5<513::AID-RRR601>3.0.CO;2-B}, -url = {https://onlinelibrary.wiley.com/doi/abs/10.1002/1099-1646%28200009/10%2916%3A5%3C513%3A%3AAID-RRR601%3E3.0.CO%3B2-B}, -year = {2000} -} - -@Article{mitrovic2011use, - title = {Use of flow management to mitigate cyanobacterial blooms in the {Lower Darling River, Australia}}, - author = {Mitrovic, Simon M. and Hardwick, Lorraine and Dorani, Forugh}, - year = 2011, - month = 09, - journal = {Journal of Plankton Research}, - volume = 33, - pages = {229--241}, - url = {https://doi.org/10.1093/plankt/fbq094}, - number = 2, - doi = {10.1093/plankt/fbq094} -} - -@Article{zhang2021biogeographic, - title = {Biogeographic distribution patterns of algal community in different urban lakes in {China}: Insights into the dynamics and co-existence}, - author = {Haihan Zhang and Rongrong Zong and Huiyan He and Kaiwen Liu and Miaomiao Yan and Yutian Miao and Ben Ma and Xin Huang}, - year = 2021, - journal = {Journal of Environmental Sciences}, - volume = 100, - pages = {216--227}, - url = {http://www.sciencedirect.com/science/article/pii/S1001074220303338}, - doi = {10.1016/j.jes.2020.07.024} -} - -@Article{lehner2011highresolution, - title = {High-resolution mapping of the world's reservoirs and dams for sustainable river-flow management}, - author = {Lehner, Bernhard and Liermann, Catherine Reidy and Revenga, Carmen and Vörösmarty, Charles and Fekete, Balazs and Crouzet, Philippe and Döll, Petra and Endejan, Marcel and Frenken, Karen and Magome, Jun and Nilsson, Christer and Robertson, James C and Rödel, Raimund and Sindorf, Nikolai and Wisser, Dominik}, - year = 2011, - journal = {Frontiers in Ecology and the Environment}, - volume = 9, - pages = {494--502}, - url = {https://esajournals.onlinelibrary.wiley.com/doi/abs/10.1890/100125}, - number = 9, - doi = {10.1890/100125}, - eprint = {https://esajournals.onlinelibrary.wiley.com/doi/pdf/10.1890/100125} -} - -@Article{barbarossa2020impacts, - title = {Impacts of current and future large dams on the geographic range connectivity of freshwater fish worldwide}, - author = {Barbarossa, Valerio and Schmitt, Rafael J. P. and Huijbregts, Mark A. J. and Zarfl, Christiane and King, Henry and Schipper, Aafke M.}, - year = 2020, - journal = {Proceedings of the National Academy of Sciences}, - publisher = {National Academy of Sciences}, - volume = 117, - pages = {3648--3655}, - url = {https://www.pnas.org/content/117/7/3648}, - number = 7, - doi = {10.1073/pnas.1912776117} -} - -@Article{zou2018divergent, - title = {Divergent trends of open-surface water body area in the contiguous {United States} from 1984 to 2016}, - author = {Zou, Zhenhua and Xiao, Xiangming and Dong, Jinwei and Qin, Yuanwei and Doughty, Russell B. and Menarguez, Michael A. and Zhang, Geli and Wang, Jie}, - year = 2018, - journal = {Proceedings of the National Academy of Sciences}, - publisher = {National Academy of Sciences}, - volume = 115, - pages = {3810--3815}, - url = {https://www.pnas.org/content/115/15/3810}, - number = 15, - doi = {10.1073/pnas.1719275115} -} - -@Article{qin2020are, - title = {Are nitrogen-to-phosphorus ratios of Chinese lakes actually increasing?}, - author = {Qin, Boqiang and Zhang, Yunlin and Zhu, Guangwei and Gong, Zhijun and Deng, Jianming and Hamilton, David P. and Gao, Guang and Shi, Kun and Zhou, Jian and Shao, Keqiang and Zhu, Mengyuan and Zhou, Yongqiang and Tang, Xiangming and Li, Liang}, - year = 2020, - journal = {Proceedings of the National Academy of Sciences}, - publisher = {National Academy of Sciences}, - volume = 117, - pages = {21000--21002}, - url = {https://www.pnas.org/content/117/35/21000}, - number = 35, - doi = {10.1073/pnas.2013445117} -} - -@Article{rowland2020recent, - title = {Recent Patterns in {Lake Erie} Phosphorus and Chlorophyll a Concentrations in Response to Changing Loads}, - author = {Rowland, Freya E. and Stow, Craig A. and Johengen, Thomas H. and Burtner, Ashley M. and Palladino, Danna and Gossiaux, Duane C. and Davis, Timothy W. and Johnson, Laura T. and Ruberg, Steve}, - year = 2020, - month = {Jan}, - journal = {Environmental Science {\&} Technology}, - publisher = {American Chemical Society}, - volume = 54, - pages = {835--841}, - url = {https://doi.org/10.1021/acs.est.9b05326}, - number = 2, - doi = {10.1021/acs.est.9b05326} -} - -@Article{becker2020water, - title = {Water level changes, subsidence, and sea level rise in the Ganges{ extendash}Brahmaputra{ extendash}Meghna delta}, - author = {Becker, M{\'e}lanie and Papa, Fabrice and Karpytchev, Mikhail and Delebecque, Caroline and Krien, Yann and Khan, Jamal Uddin and Ballu, Val{\'e}rie and Durand, Fabien and Le Cozannet, Gon{\'e}ri and Islam, A. K. M. Saiful and Calmant, St{\'e}phane and Shum, C. K.}, - year = 2020, - journal = {Proceedings of the National Academy of Sciences}, - publisher = {National Academy of Sciences}, - volume = 117, - pages = {1867--1876}, - url = {https://www.pnas.org/content/117/4/1867}, - number = 4, - doi = {10.1073/pnas.1912921117} -} - -@Article{tong2017decline, - title = {Decline in Chinese lake phosphorus concentration accompanied by shift in sources since 2006}, - author = {Tong, Yindong and Zhang, Wei and Wang, Xuejun and Couture, Raoul-Marie and Larssen, Thorjørn and Zhao, Yue and Li, Jing and Liang, Huijiao and Liu, Xueyan and Bu, Xiaoge and He, Wei and Zhang, Qianggong and Lin, Yan}, - year = 2017, - month = {Jul}, - journal = {Nature Geoscience}, - volume = 10, - pages = {507--511}, - url = {https://doi.org/10.1038/ngeo2967}, - number = 7, - doi = {10.1038/ngeo2967} -} - -@Article{vliet2017quality, - title = {Quality matters for water scarcity}, - author = {van Vliet, Michelle T.H. and Fl{\"o}rke, Martina and Wada, Yoshihide}, - year = 2017, - month = {Nov}, - journal = {Nature Geoscience}, - volume = 10, - pages = {800--802}, - url = {https://doi.org/10.1038/ngeo3047}, - number = 11, - doi = {10.1038/ngeo3047} -} - -@Article{ho2019widespread, - title = {Widespread global increase in intense lake phytoplankton blooms since the 1980s}, - author = {Ho, Jeff C. and Michalak, Anna M. and Pahlevan, Nima}, - year = 2019, - month = {Oct}, - journal = {Nature}, - volume = 574, - pages = {667--670}, - url = {https://doi.org/10.1038/s41586-019-1648-7}, - number = 7780, - doi = {10.1038/s41586-019-1648-7} -} - -@Article{lund1967eutrophication, - title = {Eutrophication}, - author = {LUND, J. W.}, - year = 1967, - journal = {Nature}, - volume = 214, - pages = {557--558}, - url = {https://doi.org/10.1038/214557a0}, - number = 5088, - doi = {10.1038/214557a0} -} - -@Article{farinotti2019large, - title = {Large hydropower and water-storage potential in future glacier-free basins}, - author = {Farinotti, Daniel and Round, Vanessa and Huss, Matthias and Compagno, Loris and Zekollari, Harry}, - year = 2019, - month = {Nov}, - journal = {Nature}, - volume = 575, - pages = {341--344}, - url = {https://doi.org/10.1038/s41586-019-1740-z}, - number = 7782, - doi = {10.1038/s41586-019-1740-z} -} - -@Article{ibanez2019changing, - author = {Ib{\'a}{\~n}ez, Carles and Pe{\~n}uelas, Josep}, - title = {Changing nutrients, changing rivers}, - volume = {365}, - number = {6454}, - pages = {637--638}, - year = {2019}, - doi = {10.1126/science.aay2723}, - publisher = {American Association for the Advancement of Science}, - URL = {https://science.sciencemag.org/content/365/6454/637}, - journal = {Science} -} - -@Article{jacoby2009eutrophication, - title = {Eutrophication: Time to Adjust Expectations}, - author = {Jacoby, Charles A. and Frazer, Thomas K.}, - year = 2009, - journal = {Science}, - publisher = {American Association for the Advancement of Science}, - volume = 324, - pages = {723--724}, - url = {https://science.sciencemag.org/content/324/5928/723.2}, - number = 5928, - doi = {10.1126/science.324_723b} -} - -@Article{wiedmann2018eutrophications, - title = {Eutrophication's neglected drivers}, - author = {Wiedmann, Thomas}, - year = 2018, - month = {Jun}, - journal = {Nature Sustainability}, - volume = 1, - pages = {273--274}, - url = {https://doi.org/10.1038/s41893-018-0084-2}, - number = 6, - doi = {10.1038/s41893-018-0084-2} -} - -@Article{fahrenkampuppenbrink2019watch, - title = {Watch out for river nutrient imbalances}, - author = {Fahrenkamp-Uppenbrink, Julia}, - year = 2019, - journal = {Science}, - publisher = {American Association for the Advancement of Science}, - volume = 365, - pages = {652--654}, - url = {https://science.sciencemag.org/content/365/6454/652.17}, - number = 6454, - doi = {10.1126/science.365.6454.652-q} -} - -@Article{likens1971nutrients, - title = {Nutrients and Eutrophication}, - author = {Likens, G. E. and Bartsch, A. F. and Lauff, G. H. and Hobbie, J. E.}, - year = 1971, - journal = {Science}, - publisher = {American Association for the Advancement of Science}, - volume = 172, - pages = {873--874}, - url = {https://science.sciencemag.org/content/172/3985/873}, - number = 3985, - doi = {10.1126/science.172.3985.873} -} - -@Article{schelske2009eutrophication, - title = {Eutrophication: Focus on Phosphorus}, - author = {Schelske, Claire L.}, - year = 2009, - journal = {Science}, - publisher = {American Association for the Advancement of Science}, - volume = 324, - pages = {722--722}, - url = {https://science.sciencemag.org/content/324/5928/722}, - number = 5928, - doi = {10.1126/science.324_722} -} - -@Article{mulligan2020goodd, - title = {GOODD, a global dataset of more than 38,000 georeferenced dams}, - author = {Mulligan, Mark and van Soesbergen, Arnout and S{\'a}enz, Leonardo}, - year = 2020, - month = {Jan}, - journal = {Scientific Data}, - volume = 7, - pages = 31, - url = {https://doi.org/10.1038/s41597-020-0362-5}, - number = 1, - doi = {10.1038/s41597-020-0362-5} -} - -@Article{hautier2014eutrophication, - title = {Eutrophication weakens stabilizing effects of diversity in natural grasslands}, - author = {Hautier, Yann and Seabloom, Eric W. and Borer, Elizabeth T. and Adler, Peter B. and Harpole, W. Stanley and Hillebrand, Helmut and Lind, Eric M. and MacDougall, Andrew S. and Stevens, Carly J. and Bakker, Jonathan D. and Buckley, Yvonne M. and Chu, Chengjin and Collins, Scott L. and Daleo, Pedro and Damschen, Ellen I. and Davies, Kendi F. and Fay, Philip A. and Firn, Jennifer and Gruner, Daniel S. and Jin, Virginia L. and Klein, Julia A. and Knops, Johannes M. H. and La Pierre, Kimberly J. and Li, Wei and McCulley, Rebecca L. and Melbourne, Brett A. and Moore, Joslin L. and O'Halloran, Lydia R. and Prober, Suzanne M. and Risch, Anita C. and Sankaran, Mahesh and Schuetz, Martin and Hector, Andy}, - year = 2014, - month = {Apr}, - journal = {Nature}, - volume = 508, - pages = {521--525}, - url = {https://doi.org/10.1038/nature13014}, - number = 7497, - doi = {10.1038/nature13014} -} - -@Article{jonkers2019global, - title = {Global change drives modern plankton communities away from the pre-industrial state}, - author = {Jonkers, Lukas and Hillebrand, Helmut and Kucera, Michal}, - year = 2019, - month = {Jun}, - journal = {Nature}, - volume = 570, - pages = {372--375}, - url = {https://doi.org/10.1038/s41586-019-1230-3}, - number = 7761, - doi = {10.1038/s41586-019-1230-3} -} - -@Article{moreau2020remote, - title = {Remote assessment of the fate of phytoplankton in the Southern Ocean sea-ice zone}, - author = {Moreau, S{\'e}bastien and Boyd, Philip W. and Strutton, Peter G.}, - year = 2020, - month = {Jun}, - journal = {Nature Communications}, - volume = 11, - pages = 3108, - url = {https://doi.org/10.1038/s41467-020-16931-0}, - number = 1, - doi = {10.1038/s41467-020-16931-0} -} - -@Article{sengupta2017phytoplankton, - title = {Phytoplankton can actively diversify their migration strategy in response to turbulent cues}, - author = {Sengupta, Anupam and Carrara, Francesco and Stocker, Roman}, - year = 2017, - month = {Mar}, - journal = {Nature}, - volume = 543, - pages = {555--558}, - url = {https://doi.org/10.1038/nature21415}, - number = 7646, - doi = {10.1038/nature21415} -} - -@Article{flombaum2020global, - title = {Global picophytoplankton niche partitioning predicts overall positive response to ocean warming}, - author = {Flombaum, Pedro and Wang, Wei-Lei and Primeau, Francois W. and Martiny, Adam C.}, - year = 2020, - month = {Feb}, - journal = {Nature Geoscience}, - volume = 13, - pages = {116--120}, - url = {https://doi.org/10.1038/s41561-019-0524-2}, - number = 2, - doi = {10.1038/s41561-019-0524-2} -} - -@Article{boyce2010global, - title = {Global phytoplankton decline over the past century}, - author = {Boyce, Daniel G. and Lewis, Marlon R. and Worm, Boris}, - year = 2010, - month = {Jul}, - journal = {Nature}, - volume = 466, - pages = {591--596}, - url = {https://doi.org/10.1038/nature09268}, - number = 7306, - doi = {10.1038/nature09268} -} - -@Article{doney2006plankton, - title = {Plankton in a warmer world}, - author = {Doney, Scott C.}, - year = 2006, - month = {Dec}, - journal = {Nature}, - volume = 444, - pages = {695--696}, - url = {https://doi.org/10.1038/444695a}, - number = 7120, - doi = {10.1038/444695a} -} - -@Article{fugere2020community, - title = {Community rescue in experimental phytoplankton communities facing severe herbicide pollution}, - author = {Fug{\`e}re, Vincent and H{\'e}bert, Marie-Pier and da Costa, Na{\'i}la Barbosa and Xu, Charles C. Y. and Barrett, Rowan D. H. and Beisner, Beatrix E. and Bell, Graham and Fussmann, Gregor F. and Shapiro, B. Jesse and Yargeau, Viviane and Gonzalez, Andrew}, - year = 2020, - month = {Apr}, - journal = {Nature Ecology {\&} Evolution}, - volume = 4, - pages = {578--588}, - url = {https://doi.org/10.1038/s41559-020-1134-5}, - number = 4, - doi = {10.1038/s41559-020-1134-5} -} - -@Article{behrenfeld2014climatemediated, - title = {Climate-mediated dance of the plankton}, - author = {Behrenfeld, Michael J.}, - year = 2014, - month = {Oct}, - journal = {Nature Climate Change}, - volume = 4, - pages = {880--887}, - url = {https://doi.org/10.1038/nclimate2349}, - number = 10, - doi = {10.1038/nclimate2349} -} - -@Article{bertrand2015phytoplanktonbacterial, - title = {Phytoplankton{ extendash}bacterial interactions mediate micronutrient colimitation at the coastal Antarctic sea ice edge}, - author = {Bertrand, Erin M. and McCrow, John P. and Moustafa, Ahmed and Zheng, Hong and McQuaid, Jeffrey B. and Delmont, Tom O. and Post, Anton F. and Sipler, Rachel E. and Spackeen, Jenna L. and Xu, Kai and Bronk, Deborah A. and Hutchins, David A. and Allen, Andrew E.}, - year = 2015, - journal = {Proceedings of the National Academy of Sciences}, - publisher = {National Academy of Sciences}, - volume = 112, - pages = {9938--9943}, - url = {https://www.pnas.org/content/112/32/9938}, - number = 32, - doi = {10.1073/pnas.1501615112} -} - -@Article{dovidio2010fluid, - author = {d{\textquoteright}Ovidio, Francesco and De Monte, Silvia and Alvain, S{\'e}verine and Dandonneau, Yves and L{\'e}vy, Marina}, - title = {Fluid dynamical niches of phytoplankton types}, - volume = {107}, - number = {43}, - pages = {18366--18370}, - year = {2010}, - doi = {10.1073/pnas.1004620107}, - publisher = {National Academy of Sciences}, - URL = {https://www.pnas.org/content/107/43/18366}, - journal = {Proceedings of the National Academy of Sciences} -} -@Misc{lehner2011global, - title = {Global Reservoir and Dam Database, Version 1 (GRanDv1): Reservoirs, Revision 01}, - author = {Lehner, B. and Reidy Liermann, C. and Revenga, C. and Vorosmarty, C. and Fekete, B. and Crouzet, P. and Doll, P. and Endejan, M. and Frenken, K. and Magome, J. and Nilsson, C. and Robertson, J. C. and Rodel, R. and Sindorf, N. and Wisser, D.}, - year = 2011, - month = 20200909, - publisher = {NASA Socioeconomic Data and Applications Center (SEDAC)}, - url = {https://doi.org/10.7927/H4HH6H08}, - address = {Palisades, NY}, - doi = {10.7927/H4HH6H08} -} - -@Article{kuria2014a, - title = {A global water supply reservoir yield model with uncertainty analysis}, - author = {Kuria, Faith W. and Vogel, Richard M.}, - year = 2014, - month = {Sep}, - journal = {Environmental Research Letters}, - publisher = {IOP Publishing}, - volume = 9, - pages = 095006, - url = {https://doi.org/10.1088/1748-9326/9/9/095006}, - number = 9, - doi = {10.1088/1748-9326/9/9/095006} -} - -@Article{galiziatundisi2018reservoirs, - title = {Reservoirs: New challenges for ecosystem studies and environmental management}, - author = {Galizia Tundisi, Jos{\'e}}, - year = 2018, - month = {Aug}, - journal = {Water Security}, - volume = {4-5}, - pages = {1--7}, - url = {https://doi.org/10.1016/j.wasec.2018.09.001}, - doi = {10.1016/j.wasec.2018.09.001} -} - -@book{fisher2018environmental, - title = {Environmental Biology}, - author = {Matthew R Fisher and OpenStax and Kamala Doršner and Alexandra Geddes andTom Theis and Jonathan Tomkin}, - publisher = {Open Oregon Educational Resources}, - year = {2018} -} -@Article{vorosmarty2003anthropogenic, - title = {Anthropogenic sediment retention: major global impact from registered river impoundments}, - author = {V{\"o}r{\"o}smarty, Charles J. and Meybeck, Michel and Fekete, Bal{\'a}zs and Sharma, Keshav and Green, Pamela and Syvitski, James P.M}, - year = 2003, - month = {Oct}, - journal = {Global and Planetary Change}, - volume = 39, - pages = {169--190}, - url = {https://doi.org/10.1016/S0921-8181(03)00023-7}, - number = 1, - doi = {10.1016/S0921-8181(03)00023-7} -} - -@Article{chao2008impact, - title = {Impact of Artificial Reservoir Water Impoundment on Global Sea Level}, - author = {Chao, B. F. and Wu, Y. H. and Li, Y. S.}, - year = 2008, - journal = {Science}, - publisher = {American Association for the Advancement of Science}, - volume = 320, - pages = {212--214}, - url = {https://science.sciencemag.org/content/320/5873/212}, - number = 5873, - doi = {10.1126/science.1154580} -} - -@Article{schindler2008eutrophication, - title = {Eutrophication of lakes cannot be controlled by reducing nitrogen input: Results of a 37-year whole-ecosystem experiment}, - author = {Schindler, David W. and Hecky, R. E. and Findlay, D. L. and Stainton, M. P. and Parker, B. R. and Paterson, M. J. and Beaty, K. G. and Lyng, M. and Kasian, S. E. M.}, - year = 2008, - journal = {Proceedings of the National Academy of Sciences}, - publisher = {National Academy of Sciences}, - volume = 105, - pages = {11254--11258}, - url = {https://www.pnas.org/content/105/32/11254}, - number = 32, - doi = {10.1073/pnas.0805108105} -} - -@Article{smith2009eutrophication, - title = {Eutrophication science: where do we go from here?}, - author = {Val H. Smith and David W. Schindler}, - year = 2009, - journal = {Trends in Ecology & Evolution}, - volume = 24, - pages = {201--207}, - url = {http://www.sciencedirect.com/science/article/pii/S016953470900041X}, - number = 4, - doi = {10.1016/j.tree.2008.11.009} -} - - -@Article{huszar2006nutrientchlorophyll, - title = {Nutrient--chlorophyll relationships in tropical--subtropical lakes: do temperate models fit?}, - author = {Huszar, Vera L.M. and Caraco, Nina F. and Roland, Fabio and Cole, Jonathan}, - year = 2006, - journal = {Biogeochemistry}, - volume = 79, - pages = {239--250}, - url = {https://doi.org/10.1007/s10533-006-9007-9}, - number = 1, - doi = {10.1007/s10533-006-9007-9} -} - -@article{koboldt2013next, - title = {The next-generation sequencing revolution and its impact on genomics}, - author = {Koboldt, Daniel C and Steinberg, Karyn Meltz and Larson, David E and Wilson, Richard K and Mardis, Elaine R}, - journal = {Cell}, - volume = {155}, - number = {1}, - pages = {27--38}, - year = {2013}, - publisher = {Elsevier} -} - -@Article{merow2020seasonality, - title = {Seasonality and uncertainty in global COVID-19 growth rates}, - author = {Merow, Cory and Urban, Mark C.}, - year = 2020, - journal = {Proceedings of the National Academy of Sciences}, - publisher = {National Academy of Sciences}, - url = {https://www.pnas.org/content/early/2020/10/12/2008590117}, - doi = {10.1073/pnas.2008590117} -} - -@InCollection{dodds2010complex, - title = {Chapter 22 - Complex Community Interactions}, - author = {Walter K. Dodds and Matt R. Whiles}, - year = 2010, - booktitle = {Freshwater Ecology (Second Edition)}, - publisher = {Academic Press}, - pages = {587--609}, - url = {http://www.sciencedirect.com/science/article/pii/B9780123747242000222}, - address = {London}, - isbn = {978-0-12-374724-2}, - doi = {10.1016/B978-0-12-374724-2.00022-2} -} - -@Article{polimene2013modelling, - title = {{Modelling a light-driven phytoplankton succession}}, - author = {Polimene, L. and Brunet, C. and Butenschön, M. and Martinez-Vicente, V. and Widdicombe, C. and Torres, R. and Allen, J.I.}, - year = 2013, - month = 09, - journal = {Journal of Plankton Research}, - volume = 36, - pages = {214--229}, - url = {https://doi.org/10.1093/plankt/fbt086}, - number = 1, - doi = {10.1093/plankt/fbt086} -} - -@Article{zamyadi2015fate, - title = {Fate of geosmin and 2-methylisoborneol in full-scale water treatment plants}, - author = {Arash Zamyadi and Rita Henderson and Richard Stuetz and Ron Hofmann and Lionel Ho and Gayle Newcombe}, - year = 2015, - journal = {Water Research}, - volume = 83, - pages = {171--183}, - url = {http://www.sciencedirect.com/science/article/pii/S0043135415300889}, - doi = {10.1016/j.watres.2015.06.038} -} - -@Article{xia2020complex, - title = {Complex odor control based on ozonation/GAC advanced treatment: optimization and application in one full-scale water treatment plant}, - author = {Xia, Ping and Zhang, Shuangyi and Yu, Jianwei and Ye, Hui and Zhang, Dong and Jiang, Lei and Wang, Zheng and Yin, Daqiang}, - year = 2020, - month = {Mar}, - journal = {Environmental Sciences Europe}, - volume = 32, - pages = 50, - url = {https://doi.org/10.1186/s12302-020-00313-w}, - number = 1, - doi = {10.1186/s12302-020-00313-w} -} - -@Article{sidneyseckler2013interference, - title = {Interference of iron as a coagulant on {MIB} removal by powdered activated carbon adsorption for low turbidity waters}, - author = {Ferreira Filho {SIDNEY SECKLER} and Marchetto MARGARIDA and Alves Laganaro ROSEMEIRE}, - year = 2013, - journal = {Journal of Environmental Sciences}, - volume = 25, - pages = {1575--1582}, - url = {http://www.sciencedirect.com/science/article/pii/S1001074212602319}, - number = 8, - doi = {10.1016/S1001-0742(12)60231-9} -} - -@article{liang2006comparative, - title = {Comparative study on the removal technologies of 2-methylisoborneol ({MIB}) in drinking water}, - author = {Liang, Cun-zhen and Wang, Dong-sheng and Ge, Xiao-peng and Yang, Min and Sun, Wei}, - journal = {Journal of Environmental Sciences}, - volume = {18}, - number = {1}, - pages = {47--51}, - year = {2006}, - publisher = {Science Press and IOS Press} -} -@Article{tung2006identification, - title = {{Identification of 2-{MIB} and geosmin producers in Feng-Shen reservoir in south Taiwan}}, - author = {Tung, S.-C. and Lin, T.-F. and Tseng, I.-C. and Lin, H.-M.}, - year = 2006, - month = 03, - journal = {Water Supply}, - volume = 6, - pages = {55--61}, - url = {https://doi.org/10.2166/ws.2006.050}, - number = 2, - doi = {10.2166/ws.2006.050} -} - -@book{simonoff2012smoothing, - title = {Smoothing methods in statistics}, - author = {Simonoff, Jeffrey S}, - year = {2012}, - publisher = {Springer Science \& Business Media} -} - -@article{su2020warm, - title = {A Warm Summer is Unlikely to Stop Transmission of COVID-19 Naturally}, - author = {Su, Ming and Peng, Shushi and Chen, Lili and Wang, Bin and Wang, Ying and Fan, Xiarui and Dong, Zhaomin}, - year = 2020, - journal = {GeoHealth}, - volume = 4, - pages = {e2020GH000292}, - url = {https://agupubs.onlinelibrary.wiley.com/doi/abs/10.1029/2020GH000292}, - number = 12, - doi = {10.1029/2020GH000292}, - eprint = {https://agupubs.onlinelibrary.wiley.com/doi/pdf/10.1029/2020GH000292}, - note = {e2020GH000292 2020GH000292} -} - -@Article{cattaneo2013hydrological, - title = {Hydrological control of filamentous green algae in a large fluvial lake (Lake Saint-Pierre, St. Lawrence River, Canada)}, - author = {Antonella Cattaneo and Christiane Hudon and Chantal Vis and Pierre Gagnon}, - year = 2013, - journal = {Journal of Great Lakes Research}, - volume = 39, - pages = {409--419}, - url = {http://www.sciencedirect.com/science/article/pii/S0380133013000774}, - number = 3, - doi = {10.1016/j.jglr.2013.06.005} -} - -@Article{zhou2020temporal, - title = {Temporal heterogeneity of microbial communities and metabolic activities during a natural algal bloom}, - author = {Jin Zhou and Yong-min Lao and Jun-ting Song and Hui Jin and Jian-ming Zhu and Zhong-hua Cai}, - year = 2020, - journal = {Water Research}, - volume = 183, - pages = 116020, - url = {http://www.sciencedirect.com/science/article/pii/S0043135420305571}, - doi = {10.1016/j.watres.2020.116020} -} - -@Article{filazzola2020a, - title = {A database of chlorophyll and water chemistry in freshwater lakes}, - author = {Filazzola, Alessandro and Mahdiyan, Octavia and Shuvo, Arnab and Ewins, Carolyn and Moslenko, Luke and Sadid, Tanzil and Blagrave, Kevin and Imrit, Mohammad Arshad and Gray, Derek K. and Quinlan, Roberto and O'Reilly, Catherine M. and Sharma, Sapna}, - year = 2020, - month = {Sep}, - journal = {Scientific Data}, - volume = 7, - pages = 310, - url = {https://doi.org/10.1038/s41597-020-00648-2}, - number = 1, - doi = {10.1038/s41597-020-00648-2} -} - -@Article{su2021identification, - title = {Identification of {MIB} producers and odor risk assessment using routine data: A case study of an estuary drinking water reservoir}, - author = {Ming Su and Yiping Zhu and Zeyu Jia and Tingting Liu and Jianwei Yu and Michael Burch and Min Yang}, - journal = {Water Research}, - volume = {192}, - pages = {116848}, - year = {2021}, - url = {http://www.sciencedirect.com/science/article/pii/S0043135421000464}, - doi = {10.1016/j.watres.2021.116848}, - other = {author1} -} - -@article{anderies2000fluctuating, - author = {Anderies, John M. and Beisner, Beatrix E.}, - title = {Fluctuating Environments and Phytoplankton Community Structure: A Stochastic Model}, - journal = {The American Naturalist}, - volume = {155}, - number = {4}, - pages = {556-569}, - year = {2000}, - doi = {10.1086/303336}, - URL = {https://doi.org/10.1086/303336}, - eprint = {https://doi.org/10.1086/303336} -} - - -@Article{sarkar2003the, - title = {The role of environmental stochasticity in a toxic phytoplankton–non-toxic phytoplankton–zooplankton system}, - author = {Sarkar, R. R. and Chattopadhayay, J.}, - year = 2003, - journal = {Environmetrics}, - volume = 14, - pages = {775--792}, - url = {https://onlinelibrary.wiley.com/doi/abs/10.1002/env.621}, - number = 8, - doi = {10.1002/env.621}, - eprint = {https://onlinelibrary.wiley.com/doi/pdf/10.1002/env.621} -} - -@Article{okuyama2015demographic, - title = {Demographic stochasticity alters the outcome of exploitation competition}, - author = {Toshinori Okuyama}, - year = 2015, - journal = {Journal of Theoretical Biology}, - volume = 365, - pages = {347--351}, - url = {http://www.sciencedirect.com/science/article/pii/S0022519314006304}, - doi = {10.1016/j.jtbi.2014.10.040} -} - -@Article{vallina2014global, - title = {Global relationship between phytoplankton diversity and productivity in the ocean}, - author = {Vallina, S. M. and Follows, M. J. and Dutkiewicz, S. and Montoya, J. M. and Cermeno, P. and Loreau, M.}, - year = 2014, - month = {Jul}, - journal = {Nature Communications}, - volume = 5, - pages = 4299, - url = {https://doi.org/10.1038/ncomms5299}, - number = 1, - doi = {10.1038/ncomms5299} -} - -@Article{paine1966food, - title = {Food Web Complexity and Species Diversity}, - author = {Paine, Robert T.}, - year = 1966, - journal = {The American Naturalist}, - publisher = {[University of Chicago Press, American Society of Naturalists]}, - volume = 100, - pages = {65--75}, - url = {http://www.jstor.org/stable/2459379}, - number = 910, - note = {Full publication date: Jan. - Feb., 1966} -} - -@Article{lubchenco1978plant, - title = {Plant Species Diversity in a Marine Intertidal Community: Importance of Herbivore Food Preference and Algal Competitive Abilities}, - author = {Lubchenco, Jane}, - year = 1978, - journal = {The American Naturalist}, - publisher = {[University of Chicago Press, American Society of Naturalists]}, - volume = 112, - pages = {23--39}, - url = {http://www.jstor.org/stable/2460135}, - number = 983, - note = {Full publication date: Jan. - Feb., 1978} -} - -@Article{armstrong1979prey, - title = {Prey Species Replacement along a Gradient of Nutrient Enrichment: A Graphical Approach}, - author = {Armstrong, Robert A.}, - year = 1979, - journal = {Ecology}, - volume = 60, - pages = {76--84}, - url = {https://esajournals.onlinelibrary.wiley.com/doi/abs/10.2307/1936470}, - number = 1, - doi = {10.2307/1936470}, - eprint = {https://esajournals.onlinelibrary.wiley.com/doi/pdf/10.2307/1936470} -} - -@Article{richerson1970contemporaneous, - title = {Contemporaneous Disequilibrium, a New Hypothesis to Explain the "Paradox of the Plankton"}, - author = {Richerson, Peter and Armstrong, Richard and Goldman, Charles R.}, - year = 1970, - journal = {Proceedings of the National Academy of Sciences}, - publisher = {National Academy of Sciences}, - volume = 67, - pages = {1710--1714}, - url = {https://www.pnas.org/content/67/4/1710}, - number = 4, - doi = {10.1073/pnas.67.4.1710} -} - -@Article{grenney1973theoretical, - title = {A Theoretical Approach to Interspecific Competition in Phytoplankton Communities}, - author = {Grenney, William J. and Bella, David A. and Curl,, Herbert C.}, - year = 1973, - journal = {The American Naturalist}, - volume = 107, - pages = {405--425}, - url = {https://www.journals.uchicago.edu/doi/10.1086/282843}, - number = 955, - doi = {10.1086/282843}, - eprint = {https://doi.org/10.1086/282843} -} - -@Article{malchow1994nonequilibrium, - title = {Nonequilibrium structures in plankton dynamics}, - author = {H. Malchow}, - year = 1994, - journal = {Ecological Modelling}, - volume = {75-76}, - pages = {123--134}, - url = {http://www.sciencedirect.com/science/article/pii/0304380094900124}, - note = {State-of-the-Art in Ecological Modelling proceedings of ISEM's 8th International Conference}, - doi = {10.1016/0304-3800(94)90012-4} -} - -@inbook{Pacala2018biologically, - author = {Stephen W. Pacala and Simon A. Levin}, - doi = {doi:10.1515/9780691188362-013}, - url = {https://doi.org/10.1515/9780691188362-013}, - title = {Biologically Generated Spatial Pattern and the Coexistence of Competing Species}, - booktitle = {Spatial Ecology: The Role of Space in Population Dynamics and Interspecific Interactions (MPB-30)}, - year = {2018}, - publisher = {Princeton University Press}, - pages = {204--232} -} - -@Article{connell1978diversity, - title = {Diversity in Tropical Rain Forests and Coral Reefs}, - author = {Connell, Joseph H.}, - year = 1978, - journal = {Science}, - publisher = {American Association for the Advancement of Science}, - volume = 199, - pages = {1302--1310}, - url = {https://science.sciencemag.org/content/199/4335/1302}, - number = 4335, - doi = {10.1126/science.199.4335.1302} -} - -@article{jin2007fei, - author = {金相灿 and 杨苏文 and 姜霞}, - title = {非稳态条件下藻类种间非生物资源竞争理论及研究进展}, - journaltitle = {生态环境}, - volume = {2007}, - number = {02}, - year = {2007}, - pages = {632--638} -} -@Article{hardin1960the, - title = {The Competitive Exclusion Principle}, - author = {Hardin, Garrett}, - year = 1960, - month = {2021/01/31/}, - journal = {Science}, - publisher = {American Association for the Advancement of Science}, - volume = 131, - pages = {1292--1297}, - url = {http://www.jstor.org/stable/1705965}, - number = 3409, - note = {Full publication date: Apr. 29, 1960} -} - -@Article{macarthur1967the, - title = {The Limiting Similarity, Convergence, and Divergence of Coexisting Species}, - author = {Macarthur, Robert and Levins, Richard}, - year = 1967, - journal = {The American Naturalist}, - publisher = {[University of Chicago Press, American Society of Naturalists]}, - volume = 101, - pages = {377--385}, - url = {http://www.jstor.org/stable/2459090}, - number = 921, - note = {Full publication date: Sep. - Oct., 1967} -} - -@Article{tilman1987the, - title = {The Importance of the Mechanisms of Interspecific Competition}, - author = {Tilman, David}, - year = 1987, - journal = {The American Naturalist}, - publisher = {[University of Chicago Press, American Society of Naturalists]}, - volume = 129, - pages = {769--774}, - url = {http://www.jstor.org/stable/2461735}, - number = 5, - note = {Full publication date: May, 1987} -} - -@Article{grover1991resource, - title = {Resource Competition in a Variable Environment: Phytoplankton Growing According to the Variable-Internal-Stores Model}, - author = {Grover, James P.}, - year = 1991, - journal = {The American Naturalist}, - volume = 138, - pages = {811--835}, - url = {https://doi.org/10.1086/285254}, - number = 4, - doi = {10.1086/285254}, - eprint = {https://doi.org/10.1086/285254} -} - -@Article{gause1934experimental, - title = {Experimental Analysis of Vito Volterra's Mathematical Theory of the Struggle for Existence}, - author = {Gause, G. F.}, - year = 1934, - month = {2021/02/01/}, - journal = {Science}, - publisher = {American Association for the Advancement of Science}, - volume = 79, - pages = {16--17}, - url = {http://www.jstor.org/stable/1660803}, - number = 2036, - note = {Full publication date: Jan. 5, 1934} -} - -@Article{hutchinson1961the, - title = {The Paradox of the Plankton}, - author = {Hutchinson, G. E.}, - year = 1961, - journal = {The American Naturalist}, - publisher = {[University of Chicago Press, American Society of Naturalists]}, - volume = 95, - pages = {137--145}, - url = {http://www.jstor.org/stable/2458386}, - number = 882, - note = {Full publication date: May - Jun., 1961} -} - -@InBook{sommer2002competition, - title = {Competition and Coexistence in Plankton Communities}, - author = {Sommer, U.}, - year = 2002, - booktitle = {Competition and Coexistence}, - publisher = {Springer Berlin Heidelberg}, - pages = {79--108}, - url = {https://doi.org/10.1007/978-3-642-56166-5_4}, - address = {Berlin, Heidelberg}, - isbn = {978-3-642-56166-5}, - doi = {10.1007/978-3-642-56166-5_4} -} - -@Article{reynolds1993intermediate, - title = {Intermediate disturbance in the ecology of phytoplankton and the maintenance of species diversity: a synthesis}, - author = {Reynolds, C. S. and Padis{\'a}k, J. and Sommer, U.}, - year = 1993, - month = {Jan}, - journal = {Hydrobiologia}, - volume = 249, - pages = {183--188}, - url = {https://doi.org/10.1007/BF00008853}, - number = 1, - doi = {10.1007/BF00008853} -} - -@Article{leibold1995the, - title = {The Niche Concept Revisited: Mechanistic Models and Community Context}, - author = {Leibold, Matthew A.}, - year = 1995, - month = {2021/02/02/}, - journal = {Ecology}, - publisher = {Ecological Society of America}, - volume = 76, - pages = {1371--1382}, - url = {http://www.jstor.org/stable/1938141}, - number = 5, - note = {Full publication date: Jul., 1995}, - doi = {10.2307/1938141} -} - -@Article{tilman2004niche, - title = {Niche tradeoffs, neutrality, and community structure: A stochastic theory of resource competition, invasion, and community assembly}, - author = {Tilman, David}, - year = 2004, - month = {Jul}, - journal = {Proceedings of the National Academy of Sciences of the United States of America}, - volume = 101, - pages = 10854, - url = {https://doi.org/10.1073/pnas.0403458101}, - number = 30, - doi = {10.1073/pnas.0403458101} -} - -@Article{chisholm2010niche, - title = {Niche and neutral models predict asymptotically equivalent species abundance distributions in high-diversity ecological communities}, - author = {Chisholm, Ryan A. and Pacala, Stephen W.}, - year = 2010, - journal = {Proceedings of the National Academy of Sciences}, - publisher = {National Academy of Sciences}, - volume = 107, - pages = {15821--15825}, - url = {https://www.pnas.org/content/107/36/15821}, - number = 36, - doi = {10.1073/pnas.1009387107} -} - -@Article{gilbert2004neutrality, - title = {Neutrality, niches, and dispersal in a temperate forest understory}, - author = {Gilbert, Benjamin and Lechowicz, Martin J.}, - year = 2004, - journal = {Proceedings of the National Academy of Sciences}, - publisher = {National Academy of Sciences}, - volume = 101, - pages = {7651--7656}, - url = {https://www.pnas.org/content/101/20/7651}, - number = 20, - doi = {10.1073/pnas.0400814101} -} - -@Article{bell2000the, title = {The Distribution of Abundance in Neutral Communities.}, - author = {Bell, Graham}, - year = 2000, - journal = {The American Naturalist}, - volume = 155, - pages = {606--617}, - url = {https://doi.org/10.1086/303345}, - number = 5, - doi = {10.1086/303345}, - note = {PMID: 10777433}, - eprint = {https://doi.org/10.1086/303345} -} - -@Article{wennekes2012the, title = {The Neutral---Niche Debate: A Philosophical Perspective}, - author = {Wennekes, Paul L. and Rosindell, James and Etienne, Rampal S.}, - year = 2012, - month = {Sep}, - journal = {Acta Biotheoretica}, - volume = 60, - pages = {257--271}, - url = {https://doi.org/10.1007/s10441-012-9144-6}, - number = 3, - doi = {10.1007/s10441-012-9144-6} -} - -@Book{hubbell2001the, - title = {The Unified Neutral Theory of Biodiversity and Biogeography (MPB-32)}, - author = {HUBBELL, STEPHEN P.}, - year = 2001, - month = {2021/02/07/}, - publisher = {Princeton University Press}, - url = {http://www.jstor.org/stable/j.ctt7rj8w}, - isbn = 9780691021287, - doi = {10.2307/j.ctt7rj8w} -} - -@Article{dumbrell2010relative, - title = {Relative roles of niche and neutral processes in structuring a soil microbial community}, - author = {Dumbrell, Alex J. and Nelson, Michaela and Helgason, Thorunn and Dytham, Calvin and Fitter, Alastair H.}, - year = 2010, - month = {Mar}, - journal = {The ISME Journal}, - volume = 4, - pages = {337--345}, - url = {https://doi.org/10.1038/ismej.2009.122}, - number = 3, - doi = {10.1038/ismej.2009.122} -} - -@Article{zhang2009quantifying, - title = {Quantifying the relative importance of niches and neutrality for coexistence in a model microbial system}, - author = {Zhang, Quan-Guo and Buckling, Angus and Godfray, H. Charles J.}, - year = 2009, - journal = {Functional Ecology}, - volume = 23, - pages = {1139--1147}, - url = {https://besjournals.onlinelibrary.wiley.com/doi/abs/10.1111/j.1365-2435.2009.01579.x}, - number = 6, - doi = {10.1111/j.1365-2435.2009.01579.x}, - eprint = {https://besjournals.onlinelibrary.wiley.com/doi/pdf/10.1111/j.1365-2435.2009.01579.x} -} - -@Article{kern2018the, - title = {The Neutral Theory in Light of Natural Selection}, - author = {Kern, Andrew D. and Hahn, Matthew W.}, - year = 2018, - month = {Jun}, - journal = {Molecular biology and evolution}, - publisher = {Oxford University Press}, - volume = 35, - pages = {1366--1371}, - url = {https://doi.org/10.1093/molbev/msy092}, - number = 6, - note = {4990884[PII]}, - doi = {10.1093/molbev/msy092}, - language = {eng} -} - -@Article{purves2010different, - title = {Different but equal: the implausible assumption at the heart of neutral theory}, - author = {Purves, Drew W. and Turnbull, Lindsay A.}, - year = 2010, - journal = {Journal of Animal Ecology}, - volume = 79, - pages = {1215--1225}, - url = {https://besjournals.onlinelibrary.wiley.com/doi/abs/10.1111/j.1365-2656.2010.01738.x}, - number = 6, - doi = {10.1111/j.1365-2656.2010.01738.x}, - eprint = {https://besjournals.onlinelibrary.wiley.com/doi/pdf/10.1111/j.1365-2656.2010.01738.x} -} - -@Article{fay2002testing, - title = {Testing the neutral theory of molecular evolution with genomic data from Drosophila}, - author = {Fay, Justin C. and Wyckoff, Gerald J. and Wu, Chung-I}, - year = 2002, - month = {Feb}, - journal = {Nature}, - volume = 415, - pages = {1024--1026}, - url = {https://doi.org/10.1038/4151024a}, - number = 6875, - doi = {10.1038/4151024a} -} - -@Article{volkov2005density, - title = {Density dependence explains tree species abundance and diversity in tropical forests}, - author = {Volkov, Igor and Banavar, Jayanth R. and He, Fangliang and Hubbell, Stephen P. and Maritan, Amos}, - year = 2005, - month = {Dec}, - journal = {Nature}, - volume = 438, - pages = {658--661}, - url = {https://doi.org/10.1038/nature04030}, - number = 7068, - doi = {10.1038/nature04030} -} - -@Article{volkov2003neutral, - title = {Neutral theory and relative species abundance in ecology}, - author = {Volkov, Igor and Banavar, Jayanth R. and Hubbell, Stephen P. and Maritan, Amos}, - year = 2003, - month = {Aug}, - journal = {Nature}, - volume = 424, - pages = {1035--1037}, - url = {https://doi.org/10.1038/nature01883}, - number = 6952, - doi = {10.1038/nature01883} -} - -@Article{chave2004neutral, - title = {Neutral theory and community ecology}, - author = {Chave, J.}, - year = 2004, - journal = {Ecology Letters}, - volume = 7, - pages = {241--253}, - url = {https://onlinelibrary.wiley.com/doi/abs/10.1111/j.1461-0248.2003.00566.x}, - number = 3, - doi = {10.1111/j.1461-0248.2003.00566.x}, - eprint = {https://onlinelibrary.wiley.com/doi/pdf/10.1111/j.1461-0248.2003.00566.x} -} - -@Article{adler2007a, - title = {A niche for neutrality}, - author = {Adler, Peter B. and HilleRisLambers, Janneke and Levine, Jonathan M.}, - year = 2007, - journal = {Ecology Letters}, - volume = 10, - pages = {95--104}, - url = {https://onlinelibrary.wiley.com/doi/abs/10.1111/j.1461-0248.2006.00996.x}, - number = 2, - doi = {10.1111/j.1461-0248.2006.00996.x}, - eprint = {https://onlinelibrary.wiley.com/doi/pdf/10.1111/j.1461-0248.2006.00996.x} -} - -@Article{chase2005towards, - title = {Towards a really unified theory for metacommunities}, - author = {CHASE, JONATHAN M.}, - year = 2005, - journal = {Functional Ecology}, - volume = 19, - pages = {182--186}, - url = {https://besjournals.onlinelibrary.wiley.com/doi/abs/10.1111/j.0269-8463.2005.00937.x}, - number = 1, - doi = {10.1111/j.0269-8463.2005.00937.x}, - eprint = {https://besjournals.onlinelibrary.wiley.com/doi/pdf/10.1111/j.0269-8463.2005.00937.x} -} - -@Article{bewick2015a, - title = {A stochastic biodiversity model with overlapping niche structure}, - author = {Bewick, Sharon and Chisholm, Ryan A. and Ak{\c{c}}ay, Erol and Godsoe, William}, - year = 2015, - month = {Feb}, - journal = {Theoretical Ecology}, - volume = 8, - pages = {81--109}, - url = {https://doi.org/10.1007/s12080-014-0227-7}, - number = 1, - doi = {10.1007/s12080-014-0227-7} -} - -@Article{rosindell2011the, - title = {The Unified Neutral Theory of Biodiversity and Biogeography at Age Ten}, - author = {James Rosindell and Stephen P. Hubbell and Rampal S. Etienne}, - year = 2011, - journal = {Trends in Ecology & Evolution}, - volume = 26, - pages = {340--348}, - url = {https://www.sciencedirect.com/science/article/pii/S0169534711000942}, - number = 7, - doi = {10.1016/j.tree.2011.03.024} -} - -@Article{chave2002a, - title = {A Spatially Explicit Neutral Model of β-Diversity in Tropical Forests}, - author = {Jérôme Chave and Egbert G. Leigh}, - year = 2002, - journal = {Theoretical Population Biology}, - volume = 62, - pages = {153--168}, - url = {https://www.sciencedirect.com/science/article/pii/S0040580902915972}, - number = 2, - doi = {10.1006/tpbi.2002.1597} -} - -@Article{chust2013latitudinal, - title = {Latitudinal phytoplankton distribution and the neutral theory of biodiversity}, - author = {Chust, Guillem and Irigoien, Xabier and Chave, Jerome and Harris, Roger P.}, - year = 2013, - journal = {Global Ecology and Biogeography}, - volume = 22, - pages = {531--543}, - url = {https://onlinelibrary.wiley.com/doi/abs/10.1111/geb.12016}, - number = 5, - doi = {10.1111/geb.12016}, - eprint = {https://onlinelibrary.wiley.com/doi/pdf/10.1111/geb.12016} -} - -@Article{devi2021quantitative, - title = {Quantitative PCR based detection system for cyanobacterial geosmin/2-methylisoborneol (2-{MIB}) events in drinking water sources: Current status and challenges}, - author = {Apramita Devi and Yi-Ting Chiu and Hsin-Ta Hsueh and Tsair-Fuh Lin}, - year = 2021, - journal = {Water Research}, - volume = 188, - pages = 116478, - url = {https://www.sciencedirect.com/science/article/pii/S0043135420310137}, - doi = {10.1016/j.watres.2020.116478} -} - -@Article{quinlan2021relationships, - title = {Relationships of total phosphorus and chlorophyll in lakes worldwide}, - author = {Quinlan, Roberto and Filazzola, Alessandro and Mahdiyan, Octavia and Shuvo, Arnab and Blagrave, Kevin and Ewins, Carolyn and Moslenko, Luke and Gray, Derek K. and O'Reilly, Catherine M. and Sharma, Sapna}, - year = 2021, - journal = {Limnology and Oceanography}, - volume = 66, - pages = {392--404}, - url = {https://aslopubs.onlinelibrary.wiley.com/doi/abs/10.1002/lno.11611}, - number = 2, - doi = {10.1002/lno.11611}, - eprint = {https://aslopubs.onlinelibrary.wiley.com/doi/pdf/10.1002/lno.11611} -} - -@Article{berry2017cyanobacterial, - title = {Cyanobacterial harmful algal blooms are a biological disturbance to Western Lake Erie bacterial communities}, - author = {Berry, Michelle A. and Davis, Timothy W. and Cory, Rose M. and Duhaime, Melissa B. and Johengen, Thomas H. and Kling, George W. and Marino, John A. and Den Uyl, Paul A. and Gossiaux, Duane and Dick, Gregory J. and Denef, Vincent J.}, - year = 2017, - journal = {Environmental Microbiology}, - volume = 19, - pages = {1149--1162}, - url = {https://sfamjournals.onlinelibrary.wiley.com/doi/abs/10.1111/1462-2920.13640}, - number = 3, - doi = {10.1111/1462-2920.13640}, - eprint = {https://sfamjournals.onlinelibrary.wiley.com/doi/pdf/10.1111/1462-2920.13640} -} - -@book{tilman1982resource, - title = {Resource competition and community structure}, - author = {Tilman, David}, - year = {1982}, - publisher = {Princeton university press} -} - -@Article{filstrup2016phytoplankton, - title = {Phytoplankton taxonomic compositional shifts across nutrient and light gradients in temperate lakes}, - author = {Christopher T. Filstrup and Adam J. Heathcote and Daniel L. Kendall and John A. Downing}, - year = 2016, - journal = {Inland Waters}, - publisher = {Taylor & Francis}, - volume = 6, - pages = {234--249}, - url = {https://www.tandfonline.com/doi/abs/10.5268/IW-6.2.939}, - number = 2, - doi = {10.5268/IW-6.2.939}, - eprint = {https://www.tandfonline.com/doi/pdf/10.5268/IW-6.2.939} -} - -@Article{wang2020light, - title = {Light, but Not Nutrients, Drives Seasonal Congruence of Taxonomic and Functional Diversity of Phytoplankton in a Eutrophic Highland Lake in {China}}, - author = {Wang, Huan and Zhao, Dandan and Chen, Liang and Giesy, John P. and Zhang, Weizhen and Yuan, Changbo and Ni, Leyi and Shen, Hong and Xie, Ping}, - year = 2020, - journal = {Frontiers in Plant Science}, - volume = 11, - pages = 179, - url = {https://www.frontiersin.org/article/10.3389/fpls.2020.00179}, - doi = {10.3389/fpls.2020.00179} -} - -@Article{holtrop2021vibrational, - title = {Vibrational modes of water predict spectral niches for photosynthesis in lakes and oceans}, - author = {Holtrop, Tadzio and Huisman, Jef and Stomp, Maayke and Biersteker, Levi and Aerts, Jeroen and Gr{\'e}bert, Th{\'e}ophile and Partensky, Fr{\'e}d{\'e}ric and Garczarek, Laurence and Woerd, Hendrik Jan van der}, - year = 2021, - month = {Jan}, - journal = {Nature Ecology {\&} Evolution}, - volume = 5, - pages = {55--66}, - url = {https://doi.org/10.1038/s41559-020-01330-x}, - number = 1, - doi = {10.1038/s41559-020-01330-x} -} - -@Article{burson2018competition, - title = {Competition for nutrients and light: testing advances in resource competition with a natural phytoplankton community}, - author = {Burson, Amanda and Stomp, Maayke and Greenwell, Emma and Grosse, Julia and Huisman, Jef}, - year = 2018, - journal = {Ecology}, - volume = 99, - pages = {1108--1118}, - url = {https://esajournals.onlinelibrary.wiley.com/doi/abs/10.1002/ecy.2187}, - number = 5, - doi = {10.1002/ecy.2187}, - eprint = {https://esajournals.onlinelibrary.wiley.com/doi/pdf/10.1002/ecy.2187} -} - -@Article{li2021benthic, - title = {Benthic invaders control the phosphorus cycle in the world{\textquoteright}s largest freshwater ecosystem}, - author = {Li, Jiying and Ianaiev, Vadym and Huff, Audrey and Zalusky, John and Ozersky, Ted and Katsev, Sergei}, - year = 2021, - journal = {Proceedings of the National Academy of Sciences}, - publisher = {National Academy of Sciences}, - volume = 118, - url = {https://www.pnas.org/content/118/6/e2008223118}, - number = 6, - doi = {10.1073/pnas.2008223118} -} - -@Article{gao2020resource, - title = {Resource competition shapes biological rhythms and promotes temporal niche differentiation in a community simulation}, - author = {Gao, Vance Difan and Morley-Fletcher, Sara and Maccari, Stefania and Vitaterna, Martha Hotz and Turek, Fred W.}, - year = 2020, - journal = {bioRxiv}, - publisher = {Cold Spring Harbor Laboratory}, - url = {https://www.biorxiv.org/content/early/2020/04/22/2020.04.22.055160}, - doi = {10.1101/2020.04.22.055160} -} - -@Article{jewson1976the, - title = {The interaction of components controlling net phytoplankton photosynthesis in a well-mixed lake ({Lough Neagh}, {Northern Ireland})}, - author = {Jewson, D. H.}, - year = 1976, - journal = {Freshwater Biology}, - volume = 6, - pages = {551--576}, - url = {https://onlinelibrary.wiley.com/doi/abs/10.1111/j.1365-2427.1976.tb01646.x}, - number = 6, - doi = {10.1111/j.1365-2427.1976.tb01646.x}, - eprint = {https://onlinelibrary.wiley.com/doi/pdf/10.1111/j.1365-2427.1976.tb01646.x} -} - -@Article{ganf1974rates, - title = {Rates of oxygen uptake by the planktonic community of a shallow equatorial lake ({Lake George}, {Uganda})}, - author = {Ganf, G. G.}, - year = 1974, - month = {Mar}, - journal = {Oecologia}, - volume = 15, - pages = {17--32}, - url = {https://doi.org/10.1007/BF00345226}, - number = 1, - doi = {10.1007/BF00345226} -} - -@Article{yuan2020rethinking, - title = {Rethinking phosphorus–chlorophyll relationships in lakes}, - author = {Yuan, Lester L. and Jones, John R.}, - year = 2020, - journal = {Limnology and Oceanography}, - volume = 65, - pages = {1847--1857}, - url = {https://aslopubs.onlinelibrary.wiley.com/doi/abs/10.1002/lno.11422}, - number = 8, - doi = {10.1002/lno.11422}, - eprint = {https://aslopubs.onlinelibrary.wiley.com/doi/pdf/10.1002/lno.11422} -} - -@Article{deevey1940limnological, - title = {Limnological studies in Connecticut; Part V, A contribution to regional limnology}, - author = {Deevey, Edward S.}, - year = 1940, - journal = {American Journal of Science}, - publisher = {American Journal of Science}, - volume = 238, - pages = {717--741}, - url = {https://www.ajsonline.org/content/238/10/717}, - number = 10, - doi = {10.2475/ajs.238.10.717} -} - -@Article{dillon1974the, - title = {The phosphorus-chlorophyll relationship in lakes1,2}, - author = {Dillon, P. J. and Rigler, F. H.}, - year = 1974, - journal = {Limnology and Oceanography}, - volume = 19, - pages = {767--773}, - url = {https://aslopubs.onlinelibrary.wiley.com/doi/abs/10.4319/lo.1974.19.5.0767}, - number = 5, - doi = {10.4319/lo.1974.19.5.0767}, - eprint = {https://aslopubs.onlinelibrary.wiley.com/doi/pdf/10.4319/lo.1974.19.5.0767} -} - -@Article{jones1976prediction, - title = {Prediction of Phosphorus and Chlorophyll Levels in Lakes}, - author = {Jones, John R. and Bachmann, Roger W.}, - year = 1976, - month = {2021/03/25/}, - journal = {Journal (Water Pollution Control Federation)}, - publisher = {Water Environment Federation}, - volume = 48, - pages = {2176--2182}, - url = {http://www.jstor.org/stable/25040000}, - number = 9, - note = {Full publication date: Sep., 1976} -} - -@Article{carlson1977a, - title = {A trophic state index for lakes1}, - author = {Carlson, Robert E.}, - year = 1977, - journal = {Limnology and Oceanography}, - volume = 22, - pages = {361--369}, - url = {https://aslopubs.onlinelibrary.wiley.com/doi/abs/10.4319/lo.1977.22.2.0361}, - number = 2, - doi = {10.4319/lo.1977.22.2.0361}, - eprint = {https://aslopubs.onlinelibrary.wiley.com/doi/pdf/10.4319/lo.1977.22.2.0361} -} - -@Article{prairie1989unifying, - title = {Unifying Nutrient–Chlorophyll Relationships in Lakes}, - author = {Prairie, Yves T. and Duarte, Carlos M. and Kalff, Jacob}, - year = 1989, - journal = {Canadian Journal of Fisheries and Aquatic Sciences}, - volume = 46, - pages = {1176--1182}, - url = {https://doi.org/10.1139/f89-153}, - number = 7, - doi = {10.1139/f89-153}, - eprint = {https://doi.org/10.1139/f89-153} -} - -@Article{mccauley1989sigmoid, - title = {Sigmoid Relationships between Nutrients and Chlorophyll among Lakes}, - author = {McCauley, Edward and Downing, John A. and Watson, Susan}, - year = 1989, - journal = {Canadian Journal of Fisheries and Aquatic Sciences}, - volume = 46, - pages = {1171--1175}, - url = {https://doi.org/10.1139/f89-152}, - number = 7, - doi = {10.1139/f89-152}, - eprint = {https://doi.org/10.1139/f89-152} -} - -@Article{mellina1995impact, - title = {Impact of zebra mussel (Dreissena polymorpha) on phosphorus cycling and chlorophyll in lakes}, - author = {Mellina, Eric and Rasmussen, Joseph B. and Mills, Edward L.}, - year = 1995, - journal = {Canadian Journal of Fisheries and Aquatic Sciences}, - volume = 52, - pages = {2553--2573}, - url = {https://doi.org/10.1139/f95-246}, - number = 12, - doi = {10.1139/f95-246}, - eprint = {https://doi.org/10.1139/f95-246} -} - -@Article{jones2005chlorophyll, - title = {Chlorophyll Response to Nutrients and Non-algal Seston in Missouri Reservoirs and Oxbow Lakes}, - author = {John R. Jones and Matthew F. Knowlton}, - year = 2005, - journal = {Lake and Reservoir Management}, - publisher = {Taylor & Francis}, - volume = 21, - pages = {361--371}, - url = {https://doi.org/10.1080/07438140509354441}, - number = 3, - doi = {10.1080/07438140509354441}, - eprint = {https://doi.org/10.1080/07438140509354441} -} - -@Article{pridmore1985chlorophyllnutrient, - title = {Chlorophyll-nutrient relationships in North Island lakes (New Zealand)}, - author = {Pridmore, R. D. and Vant, W. N. and Rutherford, J. C.}, - year = 1985, - month = {Feb}, - journal = {Hydrobiologia}, - volume = 121, - pages = {181--189}, - url = {https://doi.org/10.1007/BF00008722}, - number = 2, - doi = {10.1007/BF00008722} -} - -@Article{filstrup2014regional, - title = {Regional variability among nonlinear chlorophyll—phosphorus relationships in lakes}, - author = {Filstrup, Christopher T. and Wagner, Tyler and Soranno, Patricia A. and Stanley, Emily H. and Stow, Craig A. and Webster, Katherine E. and Downing, John A.}, - year = 2014, - journal = {Limnology and Oceanography}, - volume = 59, - pages = {1691--1703}, - url = {https://aslopubs.onlinelibrary.wiley.com/doi/abs/10.4319/lo.2014.59.5.1691}, - number = 5, - doi = {10.4319/lo.2014.59.5.1691}, - eprint = {https://aslopubs.onlinelibrary.wiley.com/doi/pdf/10.4319/lo.2014.59.5.1691} -} - -@Article{smith1982the, - title = {The nitrogen and phosphorus dependence of algal biomass in lakes: An empirical and theoretical analysis1}, - author = {Smith, Val H.}, - year = 1982, - journal = {Limnology and Oceanography}, - volume = 27, - pages = {1101--1111}, - url = {https://aslopubs.onlinelibrary.wiley.com/doi/abs/10.4319/lo.1982.27.6.1101}, - number = 6, - doi = {10.4319/lo.1982.27.6.1101}, - eprint = {https://aslopubs.onlinelibrary.wiley.com/doi/pdf/10.4319/lo.1982.27.6.1101} -} - -@Article{molot1991nitrogenphosphorus, - title = {Nitrogen/Phosphorus Ratios and the Prediction of Chlorophyll in Phosphorus-Limited Lakes in Central Ontario}, - author = {Molot, Lewis A. and Dillon, P. J.}, - year = 1991, - journal = {Canadian Journal of Fisheries and Aquatic Sciences}, - volume = 48, - pages = {140--145}, - url = {https://doi.org/10.1139/f91-019}, - number = 1, - doi = {10.1139/f91-019}, - eprint = {https://doi.org/10.1139/f91-019} -} - -@Article{mazumder1994phosphoruschlorophyll, - title = {Phosphorus–Chlorophyll Relationships under Contrasting Herbivory and Thermal Stratification: Predictions and Patterns}, - author = {Mazumder, Asit}, - year = 1994, - journal = {Canadian Journal of Fisheries and Aquatic Sciences}, - volume = 51, - pages = {390--400}, - url = {https://doi.org/10.1139/f94-040}, - number = 2, - doi = {10.1139/f94-040}, - eprint = {https://doi.org/10.1139/f94-040} -} - -@Article{hoyer1983factors, - title = {Factors Affecting the Relation Between Phosphorus and Chlorophyll a in Midwestern Reservoirs}, - author = {Hoyer, Mark V. and Jones, John R.}, - year = 1983, - journal = {Canadian Journal of Fisheries and Aquatic Sciences}, - volume = 40, - pages = {192--199}, - url = {https://doi.org/10.1139/f83-029}, - number = 2, - doi = {10.1139/f83-029}, - eprint = {https://doi.org/10.1139/f83-029} -} - -@Article{knowlton2000nonalgal, - title = {Non-Algal Seston, Light, Nutrients and Chlorophyll in Missouri Reservoirs}, - author = {Matthew F. Knowlton and John R. Jones}, - year = 2000, - journal = {Lake and Reservoir Management}, - publisher = {Taylor & Francis}, - volume = 16, - pages = {322--332}, - url = {https://doi.org/10.1080/07438140009354239}, - number = 4, - doi = {10.1080/07438140009354239}, - eprint = {https://doi.org/10.1080/07438140009354239} -} - -@Article{havens2004the, - title = {The Phosphorus-Chlorophyll Relationship in Lakes: Potential Influences of Color and Mixing Regime}, - author = {Karl E. Havens and Gertrud K. Nürnberg}, - year = 2004, - journal = {Lake and Reservoir Management}, - publisher = {Taylor & Francis}, - volume = 20, - pages = {188--196}, - url = {https://doi.org/10.1080/07438140409354243}, - number = 3, - doi = {10.1080/07438140409354243}, - eprint = {https://doi.org/10.1080/07438140409354243} -} - -@Article{prepas1983evaluation, - title = {Evaluation of the Phosphorus–Chlorophyll Relationship for Lakes Off the Precambrian Shield in Western Canada}, - author = {Prepas, E. E. and Trew, D. O.}, - year = 1983, - journal = {Canadian Journal of Fisheries and Aquatic Sciences}, - volume = 40, - pages = {27--35}, - url = {https://doi.org/10.1139/f83-005}, - number = 1, - doi = {10.1139/f83-005}, - eprint = {https://doi.org/10.1139/f83-005} -} - -@Article{spears2013variation, - title = {Variation in chlorophyll a to total phosphorus ratio across 94 UK and Irish lakes: Implications for lake management}, - author = {Bryan M. Spears and Laurence Carvalho and Bernard Dudley and Linda May}, - year = 2013, - journal = {Journal of Environmental Management}, - volume = 115, - pages = {287--294}, - url = {https://www.sciencedirect.com/science/article/pii/S0301479712005154}, - doi = {10.1016/j.jenvman.2012.10.011} -} - -@Article{pote1996relating, - title = {Relating Extractable Soil Phosphorus to Phosphorus Losses in Runoff}, - author = {Pote, D. H. and Daniel, T. C. and Moore Jr., P. A. and Nichols, D. J. and Sharpley, A. N. and Edwards, D. R.}, - year = 1996, - journal = {Soil Science Society of America Journal}, - volume = 60, - pages = {855--859}, - url = {https://acsess.onlinelibrary.wiley.com/doi/abs/10.2136/sssaj1996.03615995006000030025x}, - number = 3, - doi = {10.2136/sssaj1996.03615995006000030025x}, - eprint = {https://acsess.onlinelibrary.wiley.com/doi/pdf/10.2136/sssaj1996.03615995006000030025x} -} - -@Book{vellend2016the, - title = {The Theory of Ecological Communities (MPB-57)}, - author = {Vellend, Mark}, - year = 2016, - month = {2021/03/26/}, - publisher = {Princeton University Press}, - url = {http://www.jstor.org/stable/j.ctt1kt82jg}, - doi = {10.2307/j.ctt1kt82jg} -} - -@Article{bonachela2011dynamic, - title = {Dynamic model of flexible phytoplankton nutrient uptake}, - author = {Bonachela, Juan A. and Raghib, Michael and Levin, Simon A.}, - year = 2011, - journal = {Proceedings of the National Academy of Sciences}, - publisher = {National Academy of Sciences}, - volume = 108, - pages = {20633--20638}, - url = {https://www.pnas.org/content/108/51/20633}, - number = 51, - doi = {10.1073/pnas.1118012108} -} - -@Article{hudson2000phosphate, - title = {Phosphate concentrations in lakes}, - author = {Hudson, Jeff J. and Taylor, William D. and Schindler, David W.}, - year = 2000, - month = {Jul}, - journal = {Nature}, - volume = 406, - pages = {54--56}, - url = {https://doi.org/10.1038/35017531}, - number = 6791, - doi = {10.1038/35017531} -} - -@Article{jones1998effects, - title = {Effects of Aggregation on Chlorophyll-Phosphorus Relations in Missouri Reservoirs}, - author = {John R. Jones and Matthew F. Knowlton and Mark S. Kaiser}, - year = 1998, - journal = {Lake and Reservoir Management}, - publisher = {Taylor & Francis}, - volume = 14, - pages = {1--9}, - url = {https://doi.org/10.1080/07438149809354104}, - number = 1, - doi = {10.1080/07438149809354104}, - eprint = {https://doi.org/10.1080/07438149809354104} -} - -@Article{jones2008role, - title = {Role of land cover and hydrology in determining nutrients in mid-continent reservoirs: implications for nutrient criteria and management}, - author = {Jones, John R. and knowlton, Matthew F. and Obrecht, Daniel V.}, - year = 2008, - month = {Mar}, - journal = {Lake and Reservoir Management}, - publisher = {Taylor {\&} Francis}, - volume = 24, - pages = {1--9}, - url = {https://doi.org/10.1080/07438140809354045}, - number = 1, - doi = {10.1080/07438140809354045} -} - -@Article{jones2008nutrients, - title = {Nutrients, seston, and transparency of Missouri reservoirs and oxbow lakes: An analysis of regional limnology}, - author = {John R. Jones and Daniel V. Obrecht and Bruce D. Perkins and Matthew F. Knowlton and Anthony P. Thorpe and Shohei Watanabe and Robert R. Bacon}, - year = 2008, - journal = {Lake and Reservoir Management}, - publisher = {Taylor \& Francis}, - volume = 24, - pages = {155--180}, - url = {https://doi.org/10.1080/07438140809354058}, - number = 2, - doi = {10.1080/07438140809354058}, - eprint = {https://doi.org/10.1080/07438140809354058} -} - -@Article{klausmeier2008phytoplankton, - title = {Phytoplankton stoichiometry}, - author = {Klausmeier, C. A. and Litchman, E. and Daufresne, T. and Levin, S. A.}, - year = 2008, - journal = {Ecological Research}, - volume = 23, - pages = {479--485}, - url = {https://esj-journals.onlinelibrary.wiley.com/doi/abs/10.1007/s11284-008-0470-8}, - number = 3, - doi = {10.1007/s11284-008-0470-8}, - eprint = {https://esj-journals.onlinelibrary.wiley.com/doi/pdf/10.1007/s11284-008-0470-8} -} - -@Article{knowlton1984sources, - title = {SOURCES OF VARIABILITY IN PHOSPHORUS AND CHLOROPHYLL AND THEIR EFFECTS ON USE OF LAKE SURVEY DATA1}, - author = {Knowlton, Matthew F. and Hoyer, Mark V. and Jones, John R.}, - year = 1984, - journal = {JAWRA Journal of the American Water Resources Association}, - volume = 20, - pages = {397--408}, - url = {https://onlinelibrary.wiley.com/doi/abs/10.1111/j.1752-1688.1984.tb04722.x}, - number = 3, - doi = {10.1111/j.1752-1688.1984.tb04722.x}, - eprint = {https://onlinelibrary.wiley.com/doi/pdf/10.1111/j.1752-1688.1984.tb04722.x} -} - -@Article{martiny2013strong, - title = {Strong latitudinal patterns in the elemental ratios of marine plankton and organic matter}, - author = {Martiny, Adam C. and Pham, Chau T. A. and Primeau, Francois W. and Vrugt, Jasper A. and Moore, J. Keith and Levin, Simon A. and Lomas, Michael W.}, - year = 2013, - month = {Apr}, - journal = {Nature Geoscience}, - volume = 6, - pages = {279--283}, - url = {https://doi.org/10.1038/ngeo1757}, - number = 4, - doi = {10.1038/ngeo1757} -} - -@Article{nalewajko1966dry, - title = {Dry Weight, Ash, and Volume Data for Some Freshwater Planktonic Algae}, - author = {Nalewajko, C.}, - year = 1966, - journal = {Journal of the Fisheries Research Board of Canada}, - volume = 23, - pages = {1285--1288}, - url = {https://doi.org/10.1139/f66-119}, - number = 8, - doi = {10.1139/f66-119}, - eprint = {https://doi.org/10.1139/f66-119} -} - -@Article{nicholls1997a, - title = {A Limnological Basis For A Lake Simcoe Phosphorus Loading Objective}, - author = {Nicholls, K. H.}, - year = 1997, - month = {Oct}, - journal = {Lake and Reservoir Management}, - publisher = {Taylor {\&} Francis}, - volume = 13, - pages = {189--198}, - url = {https://doi.org/10.1080/07438149709354310}, - number = 3, - doi = {10.1080/07438149709354310} -} - -@Article{nicholls1999reduced, - title = {Reduced chlorophyll to phosphorus ratios in nearshore Great Lakes waters coincide with the establishment of dreissenid mussels}, - author = {Nicholls, K H and Hopkins, G J and Standke, S J}, - year = 1999, - journal = {Canadian Journal of Fisheries and Aquatic Sciences}, - volume = 56, - pages = {153--161}, - url = {https://doi.org/10.1139/f98-149}, - number = 1, - doi = {10.1139/f98-149}, - eprint = {https://doi.org/10.1139/f98-149} -} - -@Article{phillips2008chlorophyllnutrient, - title = {Chlorophyll--nutrient relationships of different lake types using a large European dataset}, - author = {Phillips, G. and Pietil{\"a}inen, O.-P. and Carvalho, L. and Solimini, A. and Lyche Solheim, A. and Cardoso, A. C.}, - year = 2008, - month = {Jun}, - journal = {Aquatic Ecology}, - volume = 42, - pages = {213--226}, - url = {https://doi.org/10.1007/s10452-008-9180-0}, - number = 2, - doi = {10.1007/s10452-008-9180-0} -} - -@Article{caspers1984oecd, - title = {OECD: Eutrophication of Waters. Monitoring, Assessment and Control. — 154 pp. Paris: Organisation for Economic Co-Operation and Development 1982. (Publié en français sous le titre »Eutrophication des Eaux. Méthodes de Surveillance, d'Evaluation et de Lutte«)}, - author = {Caspers, H.}, - year = 1984, - journal = {Internationale Revue der gesamten Hydrobiologie und Hydrographie}, - volume = 69, - pages = {200--200}, - url = {https://onlinelibrary.wiley.com/doi/abs/10.1002/iroh.19840690206}, - number = 2, - doi = {10.1002/iroh.19840690206}, - eprint = {https://onlinelibrary.wiley.com/doi/pdf/10.1002/iroh.19840690206} -} - -@Article{lee1984summary, - title = {Summary of US OECD Eutrophication Study. Results and their application to water quality management}, - author = {G. Fred Lee and R. Anne Jones}, - year = 1984, - journal = {SIL Proceedings, 1922-2010}, - publisher = {Taylor & Francis}, - volume = 22, - pages = {261--267}, - url = {https://doi.org/10.1080/03680770.1983.11897299}, - number = 1, - doi = {10.1080/03680770.1983.11897299}, - eprint = {https://doi.org/10.1080/03680770.1983.11897299} -} - -@Article{white1983lake, - title = {Lake eutrophication in New Zealand---a comparison with other countries of the organisation for economic co‐operation and development}, - author = {White, E.}, - year = 1983, - journal = {New Zealand Journal of Marine and Freshwater Research}, - publisher = {Taylor {\&} Francis}, - volume = 17, - pages = {437--444}, - url = {https://doi.org/10.1080/00288330.1983.9516018}, - number = 4, - doi = {10.1080/00288330.1983.9516018} -} - -@Book{rast1978summary, - title = {Summary analysis of the North American (U.S.) OECD Eutrophication project: Nutrient load in-lake response relationships and trophic state indices}, - author = {Rast, Walter and Lee, G. Fred}, - year = {1978}, - url = {https://udspace.udel.edu/handle/19716/1386}, - institution = {US EPA-600/3-78-008} -} - -@article{vollenweider1980loading, - title = {The loading concept as basis for controlling eutrophication: philosophy and preliminary results of the OECD programme on eutrophication}, - author = {Vollenweider, RA and Kerekes, J}, - journal = {Progress in Water Technology}, - volume = {12}, - number = {2}, - year = {1980} -} - -@Article{seip2000is, - title = {Is trophic state or regional location the strongest determinant for Chl-a/TP relationships in lakes?}, - author = {Seip, Knut L. and Jeppesen, Erik and Jensen, Jens Petter and Faafeng, Bjørn}, - year = 2000, - month = {Oct}, - journal = {Aquatic Sciences}, - volume = 62, - pages = {195--204}, - url = {https://doi.org/10.1007/PL00001331}, - number = 3, - doi = {10.1007/PL00001331} -} - -@Article{luimstra2018blue, - title = {Blue light reduces photosynthetic efficiency of cyanobacteria through an imbalance between photosystems {I} and {II}}, - author = {Luimstra, Veerle M. and Schuurmans, J. Merijn and Verschoor, Antonie M. and Hellingwerf, Klaas J. and Huisman, Jef and Matthijs, Hans C. P.}, - year = 2018, - month = {Nov}, - journal = {Photosynthesis Research}, - volume = 138, - pages = {177--189}, - url = {https://doi.org/10.1007/s11120-018-0561-5}, - number = 2, - doi = {10.1007/s11120-018-0561-5} -} - -@Article{tuji2018two, - title = {Two new {{\textit{Pseudanabaena}}} ({Cyanobacteria, Synechococcales}) species from {Japan}, {{\textit{Pseudanabaena cinerea}}} and {{\textit{Pseudanabaena yagii}}}, which produce 2-methylisoborneol}, - author = {Tuji, Akihiro and Niiyama, Yuko}, - year = 2018, - month = {Oct}, - journal = {Phycological Research}, - publisher = {John Wiley {\&} Sons, Ltd}, - volume = 66, - pages = {291--299}, - url = {https://doi.org/10.1111/pre.12327}, - number = 4, - doi = {10.1111/pre.12327} -} - -@Article{shu2012effects, - title = {Effects of light quality on the accumulation of oil in a mixed culture of {{\textit{Chlorella}}} sp. and {{\textit{Saccharomyces cerevisiae}}}}, - author = {Shu, Chin-Hang and Tsai, Chieh-Chung and Liao, Wei-Hsiu and Chen, Kun-Yan and Huang, Hao-Chen}, - year = 2012, - journal = {Journal of Chemical Technology {\&} Biotechnology}, - publisher = {John Wiley {\&} Sons, Ltd}, - volume = 87, - pages = {601--607}, - url = {https://doi.org/10.1002/jctb.2750}, - number = 5, - doi = {10.1002/jctb.2750} -} - -@InBook{wehrmeyer2003lightharvesting, - title = {Light-Harvesting Systems in the Photosynthetic Apparatus of Cyanobacteria, Red Algae and Cryptophytes}, - author = {Wehrmeyer, W.}, - year = 2003, - booktitle = {Environmental Signal Processing and Adaptation}, - publisher = {Springer Berlin Heidelberg}, - pages = {87--111}, - url = {https://doi.org/10.1007/978-3-642-56096-5_6}, - address = {Berlin, Heidelberg}, - isbn = {978-3-642-56096-5}, - doi = {10.1007/978-3-642-56096-5_6} -} - -@Article{ren2018global, - title = {Global radiation, photosynthetically active radiation, and the diffuse component dataset of {China}, 1981--2010}, - author = {Ren, X. and He, H. and Zhang, L. and Yu, G.}, - year = 2018, - journal = {Earth System Science Data}, - volume = 10, - pages = {1217--1226}, - url = {https://essd.copernicus.org/articles/10/1217/2018/}, - number = 3, - doi = {10.5194/essd-10-1217-2018} -} - -@InCollection{castenholz1988culturing, - title = {Culturing methods for cyanobacteria}, - author = {Richard W. Castenholz}, - year = 1988, - booktitle = {Cyanobacteria}, - publisher = {Academic Press}, - volume = 167, - pages = {68--93}, - url = {https://www.sciencedirect.com/science/article/pii/0076687988670066}, - doi = {10.1016/0076-6879(88)67006-6} -} - -@Article{vellend2010conceptual, - title = {Conceptual Synthesis in Community Ecology}, - author = {Vellend, Mark}, - year = 2010, - journal = {The Quarterly Review of Biology}, - volume = 85, - pages = {183--206}, - url = {https://doi.org/10.1086/652373}, - number = 2, - doi = {10.1086/652373}, - note = {PMID: 20565040}, - eprint = {https://doi.org/10.1086/652373} -} - -@Article{nong2020evaluation, - title = {Evaluation of water quality in the South-to-North Water Diversion Project of {China} using the water quality index (WQI) method}, - author = {Xizhi Nong and Dongguo Shao and Hua Zhong and Jiankui Liang}, - year = 2020, - journal = {Water Research}, - volume = 178, - pages = 115781, - url = {https://www.sciencedirect.com/science/article/pii/S0043135420303183}, - doi = {10.1016/j.watres.2020.115781} -} - -@Article{huisman2018cyanobacterial, - title = {Cyanobacterial blooms}, - author = {Huisman, Jef and Codd, Geoffrey A. and Paerl, Hans W. and Ibelings, Bas W. and Verspagen, Jolanda M. H. and Visser, Petra M.}, - year = 2018, - month = {Aug}, - journal = {Nature Reviews Microbiology}, - volume = 16, - pages = {471--483}, - url = {https://doi.org/10.1038/s41579-018-0040-1}, - number = 8, - doi = {10.1038/s41579-018-0040-1} -} - -@Article{verspagen2006water, - title = {Water Management Strategies Against Toxic {{\textit{Microcystis}}} Blooms In The {Dutch Delta}}, - author = {Verspagen, Jolanda M. H. and Passarge, Jutta and Jöhnk, Klaus D. and Visser, Petra M. and Peperzak, Louis and Boers, Paul and Laanbroek, Hendrikus J. and Huisman, Jef}, - year = 2006, - journal = {Ecological Applications}, - volume = 16, - pages = {313--327}, - url = {https://esajournals.onlinelibrary.wiley.com/doi/abs/10.1890/04-1953}, - number = 1, - doi = {10.1890/04-1953}, - eprint = {https://esajournals.onlinelibrary.wiley.com/doi/pdf/10.1890/04-1953} -} - -@Article{xiao2011succession, - title = {Succession of phytoplankton functional groups regulated by monsoonal hydrology in a large canyon-shaped reservoir}, - author = {Li-Juan Xiao and Tian Wang and Ren Hu and Bo-Ping Han and Sheng Wang and Xin Qian and Judit Padisák}, - year = 2011, - journal = {Water Research}, - volume = 45, - pages = {5099--5109}, - url = {https://www.sciencedirect.com/science/article/pii/S0043135411003988}, - number = 16, - doi = {10.1016/j.watres.2011.07.012} -} - -@Article{xu2021using, - title = {Using sodium percarbonate to suppress vertically distributed filamentous cyanobacteria while maintaining the stability of microeukaryotic communities in drinking water reservoirs}, - author = {Hangzhou Xu and Yiming Pang and Yizhen Li and Shasha Zhang and Haiyan Pei}, - year = 2021, - journal = {Water Research}, - volume = 197, - pages = 117111, - url = {https://www.sciencedirect.com/science/article/pii/S0043135421003092}, - doi = {10.1016/j.watres.2021.117111} -} - -@Article{wang2021simultaneous, - title = {Simultaneous removal of cyanobacterial blooms and production of clean water by coupling flocculation with a rotary drum filter}, - author = {Wang, Chunbo and Cai, Qijia and Li, Yang and Tian, Cuicui and Wu, Xingqiang and Huang, Yuhong and Xiao, Bangding}, - year = 2021, - month = {Apr}, - journal = {Environmental Science and Pollution Research}, - url = {https://doi.org/10.1007/s11356-021-13664-5}, - doi = {10.1007/s11356-021-13664-5} -} - -@Article{bachmann2001evaluation, - title = {Evaluation of recent limnological changes at Lake Apopka}, - author = {Bachmann, Roger W. and Hoyer, Mark V. and Canfield, Daniel E.}, - year = 2001, - month = {Apr}, - journal = {Hydrobiologia}, - volume = 448, - pages = {19--26}, - url = {https://doi.org/10.1023/A:1017564911355}, - number = 1, - doi = {10.1023/A:1017564911355} -} - -@Article{warren2011ecological, - title = {Ecological niche modeling in Maxent: the importance of model complexity and the performance of model selection criteria}, - author = {Warren, Dan L. and Seifert, Stephanie N.}, - year = 2011, - month = {Mar}, - journal = {Ecological Applications}, - publisher = {John Wiley {\&} Sons, Ltd}, - volume = 21, - pages = {335--342}, - url = {https://doi.org/10.1890/10-1171.1}, - number = 2, - doi = {10.1890/10-1171.1} -} - -@Article{elith2011a, - title = {A statistical explanation of MaxEnt for ecologists}, - author = {Elith, Jane and Phillips, Steven J. and Hastie, Trevor and Dud{\'i}k, Miroslav and Chee, Yung En and Yates, Colin J.}, - year = 2011, - month = {Jan}, - journal = {Diversity and Distributions}, - publisher = {John Wiley {\&} Sons, Ltd}, - volume = 17, - pages = {43--57}, - url = {https://doi.org/10.1111/j.1472-4642.2010.00725.x}, - number = 1, - doi = {10.1111/j.1472-4642.2010.00725.x} -} - -@article{xing2011zui, - author = {邢丁亮, 郝占庆}, - title = {最大熵原理及其在生态学研究中的应用}, - publisher = {生物多样性}, - year = {2011}, - journal = {生物多样性}, - volume = {19}, - number = {3}, - numpages = {7}, - pages = {295}, - url = {https://www.biodiversity-science.net/CN/abstract/article_7207.shtml}, - doi = {10.3724/SP.J.1003.2011.08318} -} -@Article{chen2019stochastic, - title = {Stochastic processes shape microeukaryotic community assembly in a subtropical river across wet and dry seasons}, - author = {Chen, Weidong and Kexin, Ren and Isabwe, Alain and Chen, Huihuang and Liu, Min}, - year = 2019, - month = 10, - journal = {Microbiome}, - volume = 7, - pages = 138, - doi = {10.1186/s40168-019-0749-8} -} - -@Article{liu2015the, - title = {The biogeography of abundant and rare bacterioplankton in the lakes and reservoirs of {China}}, - author = {Liu, Lemian and Yang, Jun and Yu, Zheng and Wilkinson, David M.}, - year = 2015, - month = {Sep}, - journal = {The ISME Journal}, - volume = 9, - pages = {2068--2077}, - url = {https://doi.org/10.1038/ismej.2015.29}, - number = 9, - doi = {10.1038/ismej.2015.29} -} - -@Article{mo2021low, - title = {Low shifts in salinity determined assembly processes and network stability of microeukaryotic plankton communities in a subtropical urban reservoir}, - author = {Mo, Yuanyuan and Peng, Feng and Gao, Xiaofei and Xiao, Peng and Logares, Ramiro and Jeppesen, Erik and Ren, Kexin and Xue, Yuanyuan and Yang, Jun}, - year = 2021, - month = {Jun}, - journal = {Microbiome}, - volume = 9, - pages = 128, - url = {https://doi.org/10.1186/s40168-021-01079-w}, - number = 1, - doi = {10.1186/s40168-021-01079-w} -} - -@Article{liang2020the, - title = {The role of phosphorus and nitrogen on chlorophyll a: Evidence from hundreds of lakes}, - author = {Zhongyao Liang and Patricia A. Soranno and Tyler Wagner}, - year = 2020, - journal = {Water Research}, - volume = 185, - pages = 116236, - url = {https://www.sciencedirect.com/science/article/pii/S0043135420307739}, - doi = {10.1016/j.watres.2020.116236} -} - -@Article{schindler2012the, - title = {The dilemma of controlling cultural eutrophication of lakes}, - author = {Schindler, David W.}, - year = 2012, - journal = {Proceedings of the Royal Society B: Biological Sciences}, - volume = 279, - pages = {4322--4333}, - url = {https://royalsocietypublishing.org/doi/abs/10.1098/rspb.2012.1032}, - number = 1746, - doi = {10.1098/rspb.2012.1032}, - eprint = {https://royalsocietypublishing.org/doi/pdf/10.1098/rspb.2012.1032} -} - -@Article{xu2020rrna, - title = {18S rRNA gene sequencing reveals significant influence of anthropogenic effects on microeukaryote diversity and composition along a river-to-estuary gradient ecosystem}, - author = {Xu, Hangzhou and Zhang, Shasha and Ma, Guangxiang and Zhang, Yanfang and Li, Yizhen and Pei, Haiyan}, - year = 2020, - month = {Feb}, - journal = {Science of The Total Environment}, - volume = 705, - pages = 135910, - url = {https://doi.org/10.1016/j.scitotenv.2019.135910}, - doi = {10.1016/j.scitotenv.2019.135910} -} - -@Article{ji2017competition, - title = {Competition between cyanobacteria and green algae at low versus elevated CO2: who will win, and why?}, - author = {Ji, Xing and Verspagen, Jolanda M. H. and Stomp, Maayke and Huisman, Jef}, - year = 2017, - month = {Jun}, - journal = {Journal of experimental botany}, - publisher = {Oxford University Press}, - volume = 68, - pages = {3815--3828}, - url = {https://doi.org/10.1093/jxb/erx027}, - number = 14, - note = {3001864[PII]}, - doi = {10.1093/jxb/erx027}, - language = {eng} -} - -@article{gao2012effects, - author = {{Gao}, Y. and {Cornwell}, J.~C. and {Stoecker}, D.~K. and {Owens}, M.~S.}, - title = "{Effects of cyanobacterial-driven pH increases on sediment nutrient fluxes and coupled nitrification-denitrification in a shallow fresh water estuary}", - journal = {Biogeosciences}, - year = 2012, - month = jul, - volume = {9}, - number = {7}, - pages = {2697-2710}, - doi = {10.5194/bg-9-2697-2012}, - adsurl = {https://ui.adsabs.harvard.edu/abs/2012BGeo....9.2697G}, - adsnote = {Provided by the SAO/NASA Astrophysics Data System} -} - -@inproceedings{wildman1974influence, - title = {Influence of blue-green algae on the pH and buffer capacity of culture media}, - author = {Wildman, Ruth B and Benner, Barbara L and Held, Douglas D and Schauberger, Charles W}, - booktitle = {Proceedings of the Iowa Academy of Science}, - volume = {81}, - number = {4}, - pages = {192--196}, - year = {1974} -} - -@Article{lohbeck2012adaptive, - title = {Adaptive evolution of a key phytoplankton species to ocean acidification}, - author = {Lohbeck, Kai T. and Riebesell, Ulf and Reusch, Thorsten B. H.}, - year = 2012, - journal = {Nature Geoscience}, - volume = 5, - pages = {346--351}, - url = {https://doi.org/10.1038/ngeo1441}, - number = 5, - doi = {10.1038/ngeo1441} -} - -@Article{iudicone2020some, - title = {Some may like it hot}, - author = {Iudicone, Daniele}, - year = 2020, - month = {Feb}, - journal = {Nature Geoscience}, - volume = 13, - pages = {98--99}, - url = {https://doi.org/10.1038/s41561-020-0535-z}, - number = 2, - doi = {10.1038/s41561-020-0535-z} -} - -@Article{lotze2019global, - title = {Global ensemble projections reveal trophic amplification of ocean biomass declines with climate change}, - author = {Lotze, Heike K. and Tittensor, Derek P. and Bryndum-Buchholz, Andrea and Eddy, Tyler D. and Cheung, William W. L. and Galbraith, Eric D. and Barange, Manuel and Barrier, Nicolas and Bianchi, Daniele and Blanchard, Julia L. and Bopp, Laurent and Büchner, Matthias and Bulman, Catherine M. and Carozza, David A. and Christensen, Villy and Coll, Marta and Dunne, John P. and Fulton, Elizabeth A. and Jennings, Simon and Jones, Miranda C. and Mackinson, Steve and Maury, Olivier and Niiranen, Susa and Oliveros-Ramos, Ricardo and Roy, Tilla and Fernandes, Jos{\'e} A. and Schewe, Jacob and Shin, Yunne-Jai and Silva, Tiago A. M. and Steenbeek, Jeroen and Stock, Charles A. and Verley, Philippe and Volkholz, Jan and Walker, Nicola D. and Worm, Boris}, - year = 2019, - month = {Jun}, - journal = {Proceedings of the National Academy of Sciences}, - volume = 116, - pages = 12907, - url = {https://doi.org/10.1073/pnas.1900194116}, - number = 26, - doi = {10.1073/pnas.1900194116} -} - -@Article{poikane2019nutrient, - title = {Nutrient criteria for surface waters under the European Water Framework Directive: Current state-of-the-art, challenges and future outlook}, - author = {Poikane, Sandra and Kelly, Martyn G. and Salas Herrero, Fuensanta and Pitt, Jo-Anne and Jarvie, Helen P. and Claussen, Ulrich and Leujak, Wera and Lyche Solheim, Anne and Teixeira, Heliana and Phillips, Geoff}, - year = 2019, - month = {Dec}, - journal = {Science of The Total Environment}, - volume = 695, - pages = 133888, - url = {https://doi.org/10.1016/j.scitotenv.2019.133888}, - doi = {10.1016/j.scitotenv.2019.133888} -} - -@Article{yuan2017using, - title = {Using National-Scale Data To Develop Nutrient--Microcystin Relationships That Guide Management Decisions}, - author = {Yuan, Lester L. and Pollard, Amina I.}, - year = 2017, - month = {Jun}, - journal = {Environmental Science {\&} Technology}, - publisher = {American Chemical Society}, - volume = 51, - pages = {6972--6980}, - url = {https://doi.org/10.1021/acs.est.7b01410}, - number = 12, - doi = {10.1021/acs.est.7b01410} -} - -@Article{bai2017toward, - title = {Toward Quantitative Understanding of the Bioavailability of Dissolved Organic Matter in Freshwater Lake during Cyanobacteria Blooming}, - author = {Bai, Leilei and Cao, Chicheng and Wang, Changhui and Xu, Huacheng and Zhang, Hui and Slaveykova, Vera I. and Jiang, Helong}, - year = 2017, - month = {Jun}, - journal = {Environmental Science {\&} Technology}, - publisher = {American Chemical Society}, - volume = 51, - pages = {6018--6026}, - url = {https://doi.org/10.1021/acs.est.7b00826}, - number = 11, - doi = {10.1021/acs.est.7b00826} -} - -@Article{omernik2014ecoregions, - title = {Ecoregions of the Conterminous {United States}: Evolution of a Hierarchical Spatial Framework}, - author = {Omernik, James M. and Griffith, Glenn E.}, - year = 2014, - month = {Dec}, - journal = {Environmental Management}, - volume = 54, - pages = {1249--1266}, - url = {https://doi.org/10.1007/s00267-014-0364-1}, - number = 6, - doi = {10.1007/s00267-014-0364-1} -} - -@Article{stoddard2016continentalscale, - title = {Continental-Scale Increase in Lake and Stream Phosphorus: Are Oligotrophic Systems Disappearing in the {United States}?}, - author = {Stoddard, John L. and Van Sickle, John and Herlihy, Alan T. and Brahney, Janice and Paulsen, Steven and Peck, David V. and Mitchell, Richard and Pollard, Amina I.}, - year = 2016, - month = {Apr}, - journal = {Environmental Science {\&} Technology}, - publisher = {American Chemical Society}, - volume = 50, - pages = {3409--3415}, - url = {https://doi.org/10.1021/acs.est.5b05950}, - number = 7, - doi = {10.1021/acs.est.5b05950} -} - -@book{chorus2021toxic, - title = {Toxic cyanobacteria in water: a guide to their public health consequences, monitoring and management}, - author = {Chorus, Ingrid and Welker, Martin}, - year = {2021}, - doi = {10.1201/9781003081449}, - publisher = {Taylor \& Francis} -} -@Article{tomlinson2016relating, - title = {Relating chlorophyll from cyanobacteria-dominated inland waters to a MERIS bloom index}, - author = {Tomlinson, Michelle C. and Stumpf, Richard P. and Wynne, Timothy T. and Dupuy, Danielle and Burks, Robert and Hendrickson, John and Fulton III, Rolland S.}, - year = 2016, - month = {Feb}, - journal = {Remote Sensing Letters}, - publisher = {Taylor {\&} Francis}, - volume = 7, - pages = {141--149}, - url = {https://doi.org/10.1080/2150704X.2015.1117155}, - number = 2, - doi = {10.1080/2150704X.2015.1117155} -} - -@Article{li2021evaluation, - title = {Evaluation of indicators for cyanobacterial risk in 108 temperate lakes using 23 years of environmental monitoring data}, - author = {Li, J. and Persson, K. M. and Pekar, H. and Jansson, D.}, - year = 2021, - month = {Apr}, - journal = {Environmental Sciences Europe}, - volume = 33, - pages = 54, - url = {https://doi.org/10.1186/s12302-021-00483-1}, - number = 1, - doi = {10.1186/s12302-021-00483-1} -} - -@Article{huang2021converting, - title = {Converting of nuisance cyanobacterial biomass to feedstock for bioethanol production by regulation of intracellular carbon flow: Killing two birds with one stone}, - author = {Yingying Huang and Xuechu Chen and Silu Liu and Jinzhong Lu and Yingshi Shen and Lei Li and Lin Peng and Jingjie Hong and Qiuzhuo Zhang and Ilia Ostrovsky}, - year = 2021, - journal = {Renewable and Sustainable Energy Reviews}, - volume = 149, - pages = 111364, - url = {https://www.sciencedirect.com/science/article/pii/S136403212100650X}, - doi = {10.1016/j.rser.2021.111364} -} - -@Article{piel2021resilience, - title = {Resilience of Microbial Communities after Hydrogen Peroxide Treatment of a Eutrophic Lake to Suppress Harmful Cyanobacterial Blooms}, - author = {Piel, Tim and Sandrini, Giovanni and Muyzer, Gerard and Brussaard, Corina P. D. and Slot, Pieter C. and van Herk, Maria J. and Huisman, Jef and Visser, Petra M.}, - year = 2021, - journal = {Microorganisms}, - volume = 9, - url = {https://www.mdpi.com/2076-2607/9/7/1495}, - number = 7, - article-number = 1495, - doi = {10.3390/microorganisms9071495} -} - -@Article{mustapha2021a, - title = {A critical review on geosmin and 2-methylisoborneol in water: sources, effects, detection, and removal techniques}, - author = {Mustapha, S. and Tijani, J. O. and Ndamitso, M. M. and Abdulkareem, A. S. and Shuaib, D. T. and Mohammed, A. K.}, - year = 2021, - month = {Mar}, - journal = {Environmental Monitoring and Assessment}, - volume = 193, - pages = 204, - url = {https://doi.org/10.1007/s10661-021-08980-9}, - number = 4, - doi = {10.1007/s10661-021-08980-9} -} - -@article{hashemi1994copper, - title = {Copper resistance in {{\textit{Anabaena}}} variabilis: Effects of phosphate nutrition and polyphosphate bodies}, - author = {Hashemi, F and Leppard, GG and Kushnert, DJ}, - journal = {Microbial ecology}, - volume = {27}, - number = {2}, - pages = {159--176}, - year = {1994}, - publisher = {Springer} -} -@Article{li2018kinetics, - title = {Kinetics and mechanism of {{\textit{Pseudoanabaena}}} cell inactivation, 2-{MIB} release and degradation under exposure of ozone, chlorine and permanganate}, - author = {Li, Lei and Zhu, Cuiwen and Xie, Chuanqi and Shao, Chen and Yu, Shuili and Zhao, Laicai and Gao, Naiyun}, - year = 2018, - month = {Dec}, - journal = {Water Research}, - volume = 147, - pages = {422--428}, - url = {https://doi.org/10.1016/j.watres.2018.10.023}, - doi = {10.1016/j.watres.2018.10.023} -} - -@Article{bertone2018analysis, - title = {Analysis and modelling of powdered activated carbon dosing for taste and odour removal}, - author = {Edoardo Bertone and Carol Chang and Peta Thiel and Kelvin O’Halloran}, - year = 2018, - journal = {Water Research}, - volume = 139, - pages = {321--328}, - url = {https://www.sciencedirect.com/science/article/pii/S0043135418303075}, - doi = {10.1016/j.watres.2018.04.023} -} - -@Article{cook2001the, - title = {The application of powdered activated carbon for {MIB} and geosmin removal: predicting {PAC} doses in four raw waters}, - author = {Cook, David and Newcombe, Gayle and Sztajnbok, Pascale}, - year = 2001, - month = {Apr}, - journal = {Water Research}, - volume = 35, - pages = {1325--1333}, - url = {https://doi.org/10.1016/S0043-1354(00)00363-8}, - number = 5, - doi = {10.1016/S0043-1354(00)00363-8} -} - -@Article{zamyadi2019diagnosing, - title = {Diagnosing water treatment critical control points for cyanobacterial removal: Exploring benefits of combined microscopy, next-generation sequencing, and cell integrity methods}, - author = {Zamyadi, Arash and Romanis, Caitlin and Mills, Toby and Neilan, Brett and Choo, Florence and Coral, Lucila A. and Gale, Deb and Newcombe, Gayle and Crosbie, Nick and Stuetz, Richard and Henderson, Rita K.}, - year = 2019, - month = {Apr}, - journal = {Water Research}, - volume = 152, - pages = {96--105}, - url = {https://doi.org/10.1016/j.watres.2019.01.002}, - doi = {10.1016/j.watres.2019.01.002} -} - -@Article{huang1992particulate, - title = {Particulate element inventory of the Huanghe (Yellow River): A large, high-turbidity river}, - author = {Huang, Wei Wen and Jing, Zhang and Zhou, Zeng Hao}, - year = 1992, - month = {Oct}, - journal = {Geochimica et Cosmochimica Acta}, - volume = 56, - pages = {3669--3680}, - url = {https://doi.org/10.1016/0016-7037(92)90160-K}, - number = 10, - doi = {10.1016/0016-7037(92)90160-K} -} - -@Article{paerl2014algal, - title = {Algal blooms: Noteworthy nitrogen}, - author = {Paerl, Hans W. and Gardner, Wayne S. and McCarthy, Mark J. and Peierls, Benjamin L. and Wilhelm, Steven W.}, - year = 2014, - journal = {Science}, - publisher = {American Association for the Advancement of Science}, - volume = 346, - pages = {175--175}, - url = {https://science.sciencemag.org/content/346/6206/175.1}, - number = 6206, - doi = {10.1126/science.346.6206.175-a} -} - -@Article{oneil2012the, - title = {The rise of harmful cyanobacteria blooms: The potential roles of eutrophication and climate change}, - author = {J.M. O’Neil and T.W. Davis and M.A. Burford and C.J. Gobler}, - year = 2012, - journal = {Harmful Algae}, - volume = 14, - pages = {313--334}, - url = {https://www.sciencedirect.com/science/article/pii/S1568988311001557}, - note = {Harmful Algae--The requirement for species-specific information}, - doi = {10.1016/j.hal.2011.10.027} -} - -@Article{le2010eutrophication, - title = {Eutrophication of Lake Waters in {China}: Cost, Causes, and Control}, - author = {Le, C. and Zha, Y. and Li, Y. and Sun, D. and Lu, H. and Yin, B.}, - year = 2010, - month = {Apr}, - journal = {Environmental Management}, - volume = 45, - pages = {662--668}, - url = {https://doi.org/10.1007/s00267-010-9440-3}, - number = 4, - doi = {10.1007/s00267-010-9440-3} -} - -@article{bruce1996watershed, - author = {R. Bruce Williamson and Christine M. Smith and A. Bryce Cooper}, - title = {Watershed Riparian Management and Its Benefits to a Eutrophic Lake}, - journal = {Journal of Water Resources Planning and Management}, - volume = {122}, - number = {1}, - pages = {24-32}, - year = {1996}, - doi = {10.1061/(ASCE)0733-9496(1996)122:1(24)}, - url = {https://doi.org/10.1061/(ASCE)0733-9496(1996)122:1(24)} -} - -@Article{markou2014microalgal, - title = {Microalgal and cyanobacterial cultivation: The supply of nutrients}, - author = {Giorgos Markou and Dries Vandamme and Koenraad Muylaert}, - year = 2014, - journal = {Water Research}, - volume = 65, - pages = {186--202}, - url = {https://www.sciencedirect.com/science/article/pii/S0043135414005211}, - doi = {10.1016/j.watres.2014.07.025} -} - -@article{song2020wei, - title = {微藻种质资源库——藻类科学研究和产业发展的重要平台}, - journal = {水生生物学报}, - volume = {44}, - number = "", - pages = {1020}, - year = {2020}, - note = "", - doi = {10.7541/2020.118}, - url = {http://ssswxb.ihb.ac.cn//article/id/83329182-bc76-4ec3-802c-fe0822dabf63}, - author = {宋立荣 and 张琪 and 郑凌凌 and 李天丽 and 杜帆} -} - -@article{chen2010modelling, - author = {Chen, Hua-Bing and Wu, Jiun-Yan and Wang, Chin-Feng and Fu, Chun-Chong and Shieh, Chwen-Jen and Chen, Chih-I and Wang, Chih-Yu and Liu, Yung-Chuan}, - doi = {10.1016/j.bej.2010.09.004}, - journal = {Biochemical Engineering Journal}, - language = {English}, - number = {1}, - pages = {52-56}, - title = {Modeling on chlorophyll a and phycocyanin production by *Spirulina platensis* under various light-emitting diodes}, - volume = {53}, - year = {2010} -} - -@Article{elliott2006testing, - title = {Testing the Sensitivity of Phytoplankton Communities to Changes in Water Temperature and Nutrient Load, in a Temperate Lake}, - author = {Elliott, J. A. and Jones, I. D. and Thackeray, S. J.}, - year = 2006, - month = {Apr}, - journal = {Hydrobiologia}, - volume = 559, - pages = {401--411}, - url = {https://doi.org/10.1007/s10750-005-1233-y}, - number = 1, - doi = {10.1007/s10750-005-1233-y} -} - -@article{fei2016xia, - author = {费磊 and 邓建明 and 秦伯强 and 朱广伟 and 左胜鹏 and Jouko SARVALA and Anne-Mari VENTEL and Teija KIRKKALA}, - title = {夏季日最低温度升高对芬兰皮海湖浮游植物群落的影响}, - journaltitle = {湖泊科学}, - volume = {28}, - number = {03}, - year = {2016}, - pages = {592--598} -} - -@article{zhang2016ji, - author = {张晓忆 and 景元书 and 陈飞 and 支凤梅}, - title = {基于RDALR模型分析气象条件对太湖蓝藻水华发生的影响及预报}, - journaltitle = {环境工程学报}, - volume = {10}, - number = {10}, - year = {2016}, - pages = {5721--5729} -} -@Article{dai2021advances, - title = {Advances in sperm analysis: techniques, discoveries and applications}, - author = {Dai, Changsheng and Zhang, Zhuoran and Shan, Guanqiao and Chu, Lap-Tak and Huang, Zongjie and Moskovtsev, Sergey and Librach, Clifford and Jarvi, Keith and Sun, Yu}, - year = 2021, - month = {Aug}, - journal = {Nature Reviews Urology}, - volume = 18, - pages = {447--467}, - url = {https://doi.org/10.1038/s41585-021-00472-2}, - number = 8, - doi = {10.1038/s41585-021-00472-2} -} - -@Article{ostrovsky2020bloomforming, - title = {Bloom-forming toxic cyanobacterium {{\textit{Microcystis}}}: Quantification and monitoring with a high-frequency echosounder}, - author = {Ilia Ostrovsky and Sha Wu and Lin Li and Lirong Song}, - year = 2020, - journal = {Water Research}, - volume = 183, - pages = 116091, - url = {https://www.sciencedirect.com/science/article/pii/S004313542030628X}, - doi = {10.1016/j.watres.2020.116091} -} - -@Article{hajdu2007phytoplankton, - title = {Phytoplankton vertical distributions and composition in {Baltic Sea} cyanobacterial blooms}, - author = {Susanna Hajdu and Helena Höglander and Ulf Larsson}, - year = 2007, - journal = {Harmful Algae}, - volume = 6, - pages = {189--205}, - url = {https://www.sciencedirect.com/science/article/pii/S1568988306000990}, - number = 2, - doi = {10.1016/j.hal.2006.07.006} -} - -@Article{ye2021nonlinear, - title = {Nonlinear causal analysis reveals an effective water level regulation approach for phytoplankton blooms controlling in reservoirs}, - author = {Lin Ye and Lu Tan and Xinghua Wu and Qinghua Cai and B. Larry Li}, - year = 2021, - journal = {Science of The Total Environment}, - pages = 150948, - url = {https://www.sciencedirect.com/science/article/pii/S0048969721060265}, - doi = {10.1016/j.scitotenv.2021.150948} -} - -@Article{qiu2021using, - title = {Using molecular detection for the diversity and occurrence of cyanobacteria and 2-methylisoborneol-producing cyanobacteria in an eutrophicated reservoir in {Northern China}}, - author = {Pengfei Qiu and Youxin Chen and Chenjie Li and Da Huo and Yonghong Bi and Jianbo Wang and Yunchuang Li and Renhui Li and Gongliang Yu}, - year = 2021, - journal = {Environmental Pollution}, - volume = 288, - pages = 117772, - url = {https://www.sciencedirect.com/science/article/pii/S0269749121013543}, - doi = {10.1016/j.envpol.2021.117772} -} - -@Article{liu2021nutrient, - title = {Nutrient Removal in Eutrophic Water Promotes Stability of Planktonic Bacterial and Protist Communities}, - author = {Liu, Lemian and Wang, Shanshan and Yang, Jun and Chen, Jianfeng}, - year = 2021, - month = {Oct}, - journal = {Microbial Ecology}, - url = {https://doi.org/10.1007/s00248-021-01898-2}, - doi = {10.1007/s00248-021-01898-2} -} - -@Article{suruzzaman2022evaluation, - title = {Evaluation of the {MIB}-producing potential based on real-time qPCR in drinking water reservoirs}, - author = {Md Suruzzaman and Tengxin Cao and Jinping Lu and Yongjing Wang and Ming Su and Min Yang}, - year = 2022, - journal = {Environmental Research}, - pages = 112308, - url = {https://www.sciencedirect.com/science/article/pii/S0013935121016091}, - doi = {10.1016/j.envres.2021.112308}, - other = {corrspond2} -} - -@Article{te2017relationship, - title = {Relationship of Microbiota and Cyanobacterial Secondary Metabolites in {{\textit{Planktothricoides}}}-dominated Bloom}, - author = {Te, Shu Harn and Tan, Boon Fei and Thompson, Janelle R. and Gin, Karina Yew-Hoong}, - year = 2017, - journal = {Environmental Science \& Technology}, - volume = 51, - pages = {4199--4209}, - url = {https://doi.org/10.1021/acs.est.6b05767}, - number = 8, - doi = {10.1021/acs.est.6b05767}, - note = {PMID: 28345890}, - eprint = {https://doi.org/10.1021/acs.est.6b05767} -} - -@Article{dadheech2013cyanobacterial, - title = {{Cyanobacterial diversity in the hot spring, pelagic and benthic habitats of a tropical soda lake}}, - author = {Dadheech, Pawan K. and Glöckner, Gernot and Casper, Peter and Kotut, Kiplagat and Mazzoni, Camila Junqueira and Mbedi, Susan and Krienitz, Lothar}, - year = 2013, - month = 08, - journal = {FEMS Microbiology Ecology}, - volume = 85, - pages = {389--401}, - url = {https://doi.org/10.1111/1574-6941.12128}, - number = 2, - doi = {10.1111/1574-6941.12128} -} - -@Article{komarek2007several, - title = {Several rare freshwater planktic {Cyanobacteria (Cyanoprokaryotes)} from reservoirs in {South America}}, - author = {Jiøi Komárek and Jaroslava Komárková-Legnerová}, - journal = {Hoehnea}, - volume = {34}, - pages = {49--58}, - year = {2007}, - url = {https://www.scielo.br/j/hoehnea/a/HXZRF3TD579rtnStNVjfs6R/?lang = en&format = pdf}, - publisher = {SciELO Brasil} -} - -@Article{nguyen2014planktic, - title = {Planktic cyanobacteria from freshwater localities in {Thuathien-Hue province, Vietnam}. III. Phylogenetic inference based on partial phycocyanin sequences, morphological and toxicological characters}, - author = {Nguyen, Lien and Daugbjerg, Niels}, - year = 2014, - month = 04, - journal = {Algological Studies}, - doi = {10.1127/1864-1318/2014/0116} -} - -@Article{tawong2017diversity, - title = {Diversity of the Potential 2-Methylisoborneol-Producing Genotypes in Thai Strains of {{\textit{Planktothricoides}}} (Cyanobacteria)}, - author = {Tawong, Wittaya}, - year = 2017, - month = 08, - journal = {Brazilian Archives of Biology and Technology}, - volume = 60, - doi = {10.1590/1678-4324-2017160567} -} - -@InCollection{leech2009light, - title = {Light, Biological Receptors}, - author = {D.M. Leech and S. Johnsen}, - year = 2009, - booktitle = {Encyclopedia of Inland Waters}, - publisher = {Academic Press}, - pages = {671--681}, - url = {https://www.sciencedirect.com/science/article/pii/B9780123706263000739}, - address = {Oxford}, - isbn = {978-0-12-370626-3}, - doi = {10.1016/B978-012370626-3.00073-9} -} - -@InCollection{komarek2015chapter, - title = {Chapter 4 - Filamentous Cyanobacteria}, - author = {Jiří Komárek and Jeffrey R. Johansen}, - year = 2015, - booktitle = {Freshwater Algae of North America (Second Edition)}, - publisher = {Academic Press}, - pages = {135--235}, - url = {https://www.sciencedirect.com/science/article/pii/B9780123858764000049}, - address = {Boston}, - isbn = {978-0-12-385876-4}, - doi = {10.1016/B978-0-12-385876-4.00004-9} -} - -@Article{yang2020species, - title = {Species diversity and seasonal dynamics of filamentous cyanobacteria in urban reservoirs for drinking water supply in tropical {China}}, - author = {Yang, Yang and Zheng, Xunhao and Tang, Quehui and Gu, Jiguang and Lei, Lamei and Han, Bo-Ping}, - year = 2020, - month = aug, - journal = {Ecotoxicology (London, England)}, - volume = 29, - pages = {780—789}, - url = {https://doi.org/10.1007/s10646-020-02189-1}, - doi = {10.1007/s10646-020-02189-1}, - number = 6 -} - -@Article{mihaljevic2011cyanobacterial, - title = {Cyanobacterial blooms in a temperate river-floodplain ecosystem: the importance of hydrological extremes}, - author = {Mihaljevi{\'{c}}, Melita and Stevi{\'{c}}, Filip}, - year = 2011, - month = {Sep}, - journal = {Aquatic Ecology}, - volume = 45, - pages = {335--349}, - url = {https://doi.org/10.1007/s10452-011-9357-9}, - number = 3, - doi = {10.1007/s10452-011-9357-9} -} - -@Article{bakker2016impact, - title = {Impact of water-level fluctuations on cyanobacterial blooms: options for management}, - author = {Bakker, Elisabeth S. and Hilt, Sabine}, - year = 2016, - month = {Sep}, - journal = {Aquatic Ecology}, - volume = 50, - pages = {485--498}, - url = {https://doi.org/10.1007/s10452-015-9556-x}, - number = 3, - doi = {10.1007/s10452-015-9556-x} -} - -@Article{tan2020effects, - title = {Effects of light color on interspecific competition between {{\textit{Microcystis aeruginosa}}} and {{\textit{Chlorella pyrenoidosa}}} in batch experiment}, - author = {Tan, Xiao and Zhang, Danfeng and Duan, Zhipeng and Parajuli, Keshab and Hu, Jianyong}, - year = 2020, - month = jan, - journal = {Environmental science and pollution research international}, - volume = 27, - pages = {344—352}, - url = {https://doi.org/10.1007/s11356-019-06650-5}, - doi = {10.1007/s11356-019-06650-5}, - number = 1 -} - -@Article{luimstra2020blue, - title = {Blue light induces major changes in the gene expression profile of the cyanobacterium {{\textit{Synechocystis}}} sp. {PCC 6803}}, - author = {Luimstra, Veerle M. and Schuurmans, J. Merijn and Hellingwerf, Klaas J. and Matthijs, Hans C. P. and Huisman, Jef}, - year = 2020, - journal = {Physiologia Plantarum}, - volume = 170, - pages = {10--26}, - url = {https://onlinelibrary.wiley.com/doi/abs/10.1111/ppl.13086}, - number = 1, - doi = {10.1111/ppl.13086}, - eprint = {https://onlinelibrary.wiley.com/doi/pdf/10.1111/ppl.13086} -} - -@Article{luimstra2020changes, - title = {Changes in water color shift competition between phytoplankton species with contrasting light-harvesting strategies}, - author = {Luimstra, Veerle M. and Verspagen, Jolanda M. H. and Xu, Tianshuo and Schuurmans, J. Merijn and Huisman, Jef}, - year = 2020, - journal = {Ecology}, - volume = 101, - pages = {e02951}, - url = {https://esajournals.onlinelibrary.wiley.com/doi/abs/10.1002/ecy.2951}, - number = 3, - doi = {10.1002/ecy.2951}, - eprint = {https://esajournals.onlinelibrary.wiley.com/doi/pdf/10.1002/ecy.2951} -} - -@Article{bjorn2009a, - title = {A viewpoint: Why chlorophyll a?}, - author = {Bj{\"o}rn, Lars Olof and Papageorgiou, George C. and Blankenship, Robert E. and {Govindjee}}, - year = 2009, - month = {Feb}, - journal = {Photosynthesis Research}, - volume = 99, - pages = {85--98}, - url = {https://doi.org/10.1007/s11120-008-9395-x}, - number = 2, - doi = {10.1007/s11120-008-9395-x} -} - -@Article{ficner1993refined, - title = {Refined crystal structure of phycoerythrin from {Porphyridium cruentum} at 0.23-nm resolution and localization of the γ subunit}, - author = {Ficner, Ralf and Huber, Robert}, - year = 1993, - journal = {European Journal of Biochemistry}, - volume = 218, - pages = {103--106}, - url = {https://febs.onlinelibrary.wiley.com/doi/abs/10.1111/j.1432-1033.1993.tb18356.x}, - number = 1, - doi = {10.1111/j.1432-1033.1993.tb18356.x} -} - -@Article{weijdewit2006how, - title = {How Energy Funnels from the Phycoerythrin Antenna Complex to Photosystem I and Photosystem II in Cryptophyte Rhodomonas CS24 Cells}, - author = {van der Weij-De Wit, Chantal D. and Doust, Alexander B. and van Stokkum, Ivo H. M. and Dekker, Jan P. and Wilk, Krystyna E. and Curmi, Paul M. G. and Scholes, Gregory D. and van Grondelle, Rienk}, - year = 2006, - month = {Dec}, - journal = {The Journal of Physical Chemistry B}, - publisher = {American Chemical Society}, - volume = 110, - pages = {25066--25073}, - url = {https://doi.org/10.1021/jp061546w}, - number = 49, - doi = {10.1021/jp061546w} -} - -@Article{bryant1982phycoerythrocyanin, - title = {Phycoerythrocyanin and Phycoerythrin: Properties and Occurrence in Cyanobacteria}, - author = {Bryant, Donald A.}, - type = {Journal Article}, - year = 1982, - journal = {Microbiology}, - publisher = {Microbiology Society}, - volume = 128, - pages = {835--844}, - url = {https://www.microbiologyresearch.org/content/journal/micro/10.1099/00221287-128-4-835}, - number = 4, - doi = {10.1099/00221287-128-4-835} -} - -@Article{smith1963the, - title = {The Major and Accessory Pigments in Photosynthesis}, - author = {Smith, J H C and French, C S}, - year = 1963, - journal = {Annual Review of Plant Physiology}, - volume = 14, - pages = {181--224}, - url = {https://doi.org/10.1146/annurev.pp.14.060163.001145}, - number = 1, - doi = {10.1146/annurev.pp.14.060163.001145}, - eprint = {https://doi.org/10.1146/annurev.pp.14.060163.001145} -} - -@Article{mishra2011preparation, - title = {Preparation of highly purified C-phycoerythrin from marine cyanobacterium {{\textit{Pseudanabaena}}} sp.}, - author = {Sanjiv K. Mishra and Anupama Shrivastav and Sandhya Mishra}, - year = 2011, - journal = {Protein Expression and Purification}, - volume = 80, - pages = {234--238}, - url = {https://www.sciencedirect.com/science/article/pii/S104659281100163X}, - number = 2, - doi = {10.1016/j.pep.2011.06.016} -} - -@Article{canoeuropa2010phycobiliproteins, - title = {Phycobiliproteins from {{\textit{Pseudanabaena tenuis}}} rich in c-phycoerythrin protect against HgCl2-caused oxidative stress and cellular damage in the kidney}, - author = {Cano-Europa, Edgar and Ortiz-Butr{\'o}n, Rocio and Gallardo-Casas, Carlos Angel and Blas-Valdivia, Vanessa and Pineda-Reynoso, Marisol and Olvera-Ram{\'i}rez, Roxana and Franco-Colin, Margarita}, - year = 2010, - month = {Aug}, - journal = {Journal of Applied Phycology}, - volume = 22, - pages = {495--501}, - url = {https://doi.org/10.1007/s10811-009-9484-z}, - number = 4, - doi = {10.1007/s10811-009-9484-z} -} - -@Article{leech2018fewer, - title = {Fewer blue lakes and more murky lakes across the continental U.S.: Implications for planktonic food webs}, - author = {Leech, Dina M. and Pollard, Amina I. and Labou, Stephanie G. and Hampton, Stephanie E.}, - year = 2018, - journal = {Limnology and Oceanography}, - volume = 63, - pages = {2661--2680}, - url = {https://aslopubs.onlinelibrary.wiley.com/doi/abs/10.1002/lno.10967}, - number = 6, - doi = {10.1002/lno.10967}, - eprint = {https://aslopubs.onlinelibrary.wiley.com/doi/pdf/10.1002/lno.10967} -} - -@Article{solomon2015ecosystem, - title = {Ecosystem Consequences of Changing Inputs of Terrestrial Dissolved Organic Matter to Lakes: Current Knowledge and Future Challenges}, - author = {Solomon, Christopher T. and Jones, Stuart E. and Weidel, Brian C. and Buffam, Ishi and Fork, Megan L. and Karlsson, Jan and Larsen, Søren and Lennon, Jay T. and Read, Jordan S. and Sadro, Steven and Saros, Jasmine E.}, - year = 2015, - month = {Apr}, - journal = {Ecosystems}, - volume = 18, - pages = {376--389}, - url = {https://doi.org/10.1007/s10021-015-9848-y}, - number = 3, - doi = {10.1007/s10021-015-9848-y} -} - -@phdthesis{barnett2015effects, - title = {Effects of {{Light Quality}} and {{Light Quantity}} on the {{Growth Kinetics}} of a {{Louisiana Native Microalgal}}/{{Cyanobacterial Co}}-Culture}, - author = {Barnett, Jonathan Zell}, - year = {2015}, - language = {en}, - school = {Louisiana State University} -} - -@Article{brookes1999influence, - title = {The Influence of Light and Nutrients on Buoyancy, Filament Aggregation and Flotation of {{Anabaena}} Circinalis}, - author = {Brookes, Justin D. and George, G. Ganf and Damian, Green and John, Whittington}, - year = {1999}, - month = jan, - volume = {21}, - pages = {327--341}, - doi = {10.1093/plankt/21.2.327}, - journal = {Journal of Plankton Research}, - language = {en}, - number = {2} -} - -@article{chen2010modeling, - title = {Modeling on Chlorophyll a and Phycocyanin Production by {{Spirulina}} Platensis under Various Light-Emitting Diodes}, - author = {Chen, Huabing and Wu, Jiunyan and Wang, Chinfeng and Fu, Chunchong and Shieh, Chwenjen and Chen, Chihi and Wang, Chihyu and Liu, Yungchuan}, - year = {2010}, - volume = {53}, - pages = {52--56}, - journal = {Biochemical Engineering Journal}, - number = {1} -} - -@article{davis2002comparison, - title = {Comparison of Measured Growth Rates with Those Calculated from Rates of Photosynthesis in {{Planktothrix}} Spp. Isolated from {{Blelham Tarn}}, {{English Lake District}}}, - author = {Davis, P. A. and Walsby, A. E.}, - year = {2002}, - month = nov, - volume = {156}, - pages = {225--239}, - doi = {10.1046/j.1469-8137.2002.00495.x}, - journal = {New Phytologist}, - language = {en}, - number = {2} -} - -@article{han2017regulation, - title = {The Regulation of Photosynthetic Pigments in Terrestrial {{Nostoc}} Flagelliforme in Response to Different Light Colors}, - author = {Han, Pei-pei and Shen, Shi-gang and Guo, Rong-jun and Yao, Shun-yu and Sun, Ying and Tan, Zhi-lei and Jia, Shi-ru}, - year = {2017}, - month = jul, - volume = {25}, - pages = {128--135}, - doi = {10.1016/j.algal.2017.04.009}, - journal = {Algal Research} -} - -@article{lima2018influence, - title = {Influence of Spectral Light Quality on the Pigment Concentrations and Biomass Productivity of {{Arthrospira}} Platensis}, - author = {Lima, Gustavo M. and Teixeira, Pedro C. N. and Teixeira, Cl{\'a}udia M. L. L. and Fil{\'o}como, Diego and Lage, Celso L. S.}, - year = {2018}, - month = apr, - volume = {31}, - pages = {157--166}, - doi = {10.1016/j.algal.2018.02.012}, - journal = {Algal Research} -} - -@article{litchman2003photosynthetic, - title = {Photosynthetic and Growth Responses of Three Freshwater Algae to Phosphorus Limitation and Daylength}, - author = {Litchman, Elena and Steiner, Daniel and Bossard, Peter}, - year = {2003}, - volume = {48}, - pages = {2141--2148}, - doi = {10.1046/j.1365-2427.2003.01157.x}, - journal = {Freshwater Biology}, - number = {12} -} - -@article{raps1983adaptation, - title = {Adaptation of the Cyanobacterium {{\textit{Microcystis aeruginosa}}} to Light Intensity}, - author = {Raps, Shirley and Wyman, Kevin and Siegelman, Harold W. and Falkowski, Paul G.}, - year = {1983}, - month = jul, - volume = {72}, - pages = {829--832}, - doi = {10/fnbmfx}, - journal = {Plant Physiology}, - language = {en}, - number = {3} -} - -@book{rowan1989photosynthetic, - title = {Photosynthetic {{Pigments}} of {{Algae}}}, - author = {Rowan, K. S.}, - year = {1989}, - month = jul, - publisher = {{CUP Archive}}, - isbn = {978-0-521-30176-3}, - language = {en} -} - -@article{stomp2007colourful, - title = {Colourful Coexistence of Red and Green Picocyanobacteria in Lakes and Seas}, - author = {Stomp, Maayke and Huisman, Jef and V{\"o}r{\"o}s, Lajos and Pick, Frances R. and Laamanen, Maria and Haverkamp, Thomas and Stal, Lucas J.}, - year = {2007}, - month = apr, - volume = {10}, - pages = {290--298}, - doi = {10.1111/j.1461-0248.2007.01026.x}, - journal = {Ecology Letters}, - language = {en}, - number = {4} -} - -@article{stomp2008timescale, - title = {The {{Timescale}} of {{Phenotypic Plasticity}} and {{Its Impact}} on {{Competition}} in {{Fluctuating Environments}}.}, - author = {Stomp, Maayke and {van Dijk}, Mark A. and {van Overzee}, Harri{\"e}t M. J. and Wortel, Meike T. and Sigon, Corrien A. M. and Egas, Martijn and Hoogveld, Hans and Gons, Herman J. and Huisman, Jef}, - year = {2008}, - month = nov, - volume = {172}, - pages = {E169-E185}, - doi = {10.1086/591680}, - journal = {The American Naturalist}, - number = {5} -} - -@Article{hess1996coexistence, - title = {Coexistence of phycoerythrin and a chlorophyll a/b antenna in a marine prokaryote}, - author = {Hess, W R and Partensky, F and van der Staay, G W and Garcia-Fernandez, J M and B{\"o}rner, T and Vaulot, D}, - year = 1996, - journal = {Proceedings of the National Academy of Sciences}, - publisher = {National Academy of Sciences}, - volume = 93, - pages = {11126--11130}, - url = {https://www.pnas.org/content/93/20/11126}, - number = 20, - doi = {10.1073/pnas.93.20.11126} -} - -@Article{wyman1986underwater, - title = {Underwater light climate and the growth and pigmentation of planktonic blue-green algae (Cyanobacteria) II. The influence of light quality}, - author = {Wyman, M. and Fay, P. and Fogg, Gordon Elliott}, - year = 1986, - journal = {Proceedings of the Royal Society of London. Series B. Biological Sciences}, - volume = 227, - pages = {381--393}, - url = {https://royalsocietypublishing.org/doi/abs/10.1098/rspb.1986.0028}, - number = 1248, - doi = {10.1098/rspb.1986.0028}, - eprint = {https://royalsocietypublishing.org/doi/pdf/10.1098/rspb.1986.0028} -} - -@Article{luimstra2019exploring, - title = {Exploring the low photosynthetic efficiency of cyanobacteria in blue light using a mutant lacking phycobilisomes}, - author = {Luimstra, Veerle M. and Schuurmans, J. Merijn and de Carvalho, Carolina F. M. and Matthijs, Hans C. P. and Hellingwerf, Klaas J. and Huisman, Jef}, - year = 2019, - month = {Sep}, - journal = {Photosynthesis Research}, - volume = 141, - pages = {291--301}, - url = {https://doi.org/10.1007/s11120-019-00630-z}, - number = 3, - doi = {10.1007/s11120-019-00630-z} -} - -@Article{mullineaux2001how, - title = {How do cyanobacteria sense and respond to light?}, - author = {Mullineaux, Conrad W.}, - year = 2001, - journal = {Molecular Microbiology}, - volume = 41, - pages = {965--971}, - url = {https://onlinelibrary.wiley.com/doi/abs/10.1046/j.1365-2958.2001.02569.x}, - number = 5, - doi = {10.1046/j.1365-2958.2001.02569.x}, - eprint = {https://onlinelibrary.wiley.com/doi/pdf/10.1046/j.1365-2958.2001.02569.x} -} - -@Article{beddard1976concentration, - title = {Concentration quenching in chlorophyll}, - author = {BEDDARD, G. S. and PORTER, G.}, - year = 1976, - month = {Mar}, - journal = {Nature}, - volume = 260, - pages = {366--367}, - url = {https://doi.org/10.1038/260366a0}, - number = 5549, - doi = {10.1038/260366a0} -} - -@Article{weis1987quantum, - title = {Quantum efficiency of Photosystem II in relation to ‘energy’-dependent quenching of chlorophyll fluorescence}, - author = {Engelbert Weis and Joseph A. Berry}, - year = 1987, - journal = {Biochimica et Biophysica Acta (BBA) - Bioenergetics}, - volume = 894, - pages = {198--208}, - url = {https://www.sciencedirect.com/science/article/pii/0005272887901903}, - number = 2, - doi = {10.1016/0005-2728(87)90190-3} -} - -@Article{miyasaka1979highly, - title = {Highly efficient quantum conversion at chlorophyll a--lecithin mixed monolayer coated electrodes}, - author = {MIYASAKA, T. and WATANABE, T. and FUJISHIMA, A. and HONDA, K.}, - year = 1979, - month = {Feb}, - journal = {Nature}, - volume = 277, - pages = {638--640}, - url = {https://doi.org/10.1038/277638a0}, - number = 5698, - doi = {10.1038/277638a0} -} - -@Article{gerster2012photocurrent, - title = {Photocurrent of a single photosynthetic protein}, - author = {Gerster, Daniel and Reichert, Joachim and Bi, Hai and Barth, Johannes V. and Kaniber, Simone M. and Holleitner, Alexander W. and Visoly-Fisher, Iris and Sergani, Shlomi and Carmeli, Itai}, - year = 2012, - month = {Oct}, - journal = {Nature Nanotechnology}, - volume = 7, - pages = {673--676}, - url = {https://doi.org/10.1038/nnano.2012.165}, - number = 10, - doi = {10.1038/nnano.2012.165} -} - -@Article{sabagh2021insight, - title = {Insight into incident photon to current conversion efficiency in chlorophylls}, - author = {Sabagh, Samira and Izadyar, Mohammad and Arkan, Foroogh}, - year = 2021, - journal = {International Journal of Quantum Chemistry}, - volume = 121, - pages = {e26483}, - url = {https://onlinelibrary.wiley.com/doi/abs/10.1002/qua.26483}, - number = 5, - doi = {10.1002/qua.26483}, - eprint = {https://onlinelibrary.wiley.com/doi/pdf/10.1002/qua.26483} -} - -@Article{wolf2005phycobiliprotein, - title = {Phycobiliprotein fluorescence of Nostoc punctiforme changes during the life cycle and chromatic adaptation: characterization by spectral confocal laser scanning microscopy and spectral unmixing}, - author = {WOLF, ELKE and SCHÜΒLER, ARTHUR}, - year = 2005, - journal = {Plant, Cell \& Environment}, - volume = 28, - pages = {480--491}, - url = {https://onlinelibrary.wiley.com/doi/abs/10.1111/j.1365-3040.2005.01290.x}, - number = 4, - doi = {10.1111/j.1365-3040.2005.01290.x}, - eprint = {https://onlinelibrary.wiley.com/doi/pdf/10.1111/j.1365-3040.2005.01290.x} -} - -@Article{tomitani1999chlorophyll, - title = {Chlorophyll b and phycobilins in the common ancestor of cyanobacteria and chloroplasts}, - author = {Tomitani, Akiko and Okada, Kiyotaka and Miyashita, Hideaki and Matthijs, Hans C. P. and Ohno, Terufumi and Tanaka, Ayumi}, - year = 1999, - month = {Jul}, - journal = {Nature}, - volume = 400, - pages = {159--162}, - url = {https://doi.org/10.1038/22101}, - number = 6740, - doi = {10.1038/22101} -} - -@InCollection{morancais2018chapter, - title = {Chapter 7 - Proteins and Pigments}, - author = {Michèle Morançais and Jean-Luc Mouget and Justine Dumay}, - year = 2018, - booktitle = {Microalgae in Health and Disease Prevention}, - publisher = {Academic Press}, - pages = {145--175}, - url = {https://www.sciencedirect.com/science/article/pii/B9780128114056000074}, - isbn = {978-0-12-811405-6}, - doi = {10.1016/B978-0-12-811405-6.00007-4} -} - -@Article{krueger2020iron, - title = {Iron and manganese fluxes across the sediment-water interface in a drinking water reservoir}, - author = {Kathryn M. Krueger and Claire E. Vavrus and Mary E. Lofton and Ryan P. McClure and Paul Gantzer and Cayelan C. Carey and Madeline E. Schreiber}, - year = 2020, - journal = {Water Research}, - volume = 182, - pages = 116003, - url = {https://www.sciencedirect.com/science/article/pii/S0043135420305406}, - doi = {10.1016/j.watres.2020.116003} -} - -@Article{nurnberg2018photochemistry, - title = {Photochemistry beyond the red limit in chlorophyll f\&\#x2013;containing photosystems}, - author = {Dennis J. Nürnberg and Jennifer Morton and Stefano Santabarbara and Alison Telfer and Pierre Joliot and Laura A. Antonaru and Alexander V. Ruban and Tanai Cardona and Elmars Krausz and Alain Boussac and Andrea Fantuzzi and A. William Rutherford}, - year = 2018, - journal = {Science}, - volume = 360, - pages = {1210--1213}, - url = {https://www.science.org/doi/abs/10.1126/science.aar8313}, - number = 6394, - doi = {10.1126/science.aar8313}, - eprint = {https://www.science.org/doi/pdf/10.1126/science.aar8313} -} - -@Article{badger2003co2, - title = {CO2 concentrating mechanisms in cyanobacteria: molecular components, their diversity and evolution}, - author = {Badger, Murray R. and Price, G. Dean}, - year = 2003, - month = {Feb}, - journal = {Journal of Experimental Botany}, - volume = 54, - pages = {609--622}, - url = {https://doi.org/10.1093/jxb/erg076}, - number = 383, - doi = {10.1093/jxb/erg076} -} - -@Article{quinlan2017targeting, - title = {Targeting S-adenosylmethionine biosynthesis with a novel allosteric inhibitor of Mat2A}, - author = {Quinlan, Casey L. and Kaiser, Stephen E. and Bola{\~{n}}os, Ben and Nowlin, Dawn and Grantner, Rita and Karlicek-Bryant, Shannon and Feng, Jun Li and Jenkinson, Stephen and Freeman-Cook, Kevin and Dann, Stephen G. and Wang, Xiaoli and Wells, Peter A. and Fantin, Valeria R. and Stewart, Al E. and Grant, Stephan K.}, - year = 2017, - month = {Jul}, - journal = {Nature Chemical Biology}, - volume = 13, - pages = {785--792}, - url = {https://doi.org/10.1038/nchembio.2384}, - number = 7, - doi = {10.1038/nchembio.2384} -} - -@Article{beale1983biosynthesis, - title = {Biosynthesis of phycocyanobilin from exogenous labeled biliverdin in Cyanidium caldarium}, - author = {Beale, Samuel I. and Cornejo, Juan}, - year = 1983, - month = {Nov}, - journal = {Archives of Biochemistry and Biophysics}, - volume = 227, - pages = {279--286}, - url = {https://doi.org/10.1016/0003-9861(83)90372-7}, - number = 1, - doi = {10.1016/0003-9861(83)90372-7} -} - -@Article{brown1984biosynthesis, - title = {Biosynthesis of the chromophore of phycobiliproteins. A study of mesohaem and mesobiliverdin as possible intermediates and further evidence for an algal haem oxygenase}, - author = {Brown, S. B. and Holroyd, J. A.}, - year = 1984, - month = {Jan}, - journal = {Biochemical Journal}, - volume = 217, - pages = {265--272}, - url = {https://doi.org/10.1042/bj2170265}, - number = 1, - doi = {10.1042/bj2170265} -} - -@Article{brown1981bile, - title = {Bile pigment synthesis in plants. Incorporation of haem into phycocyanobilin and phycobiliproteins in Cyanidium caldarium}, - author = {Brown, S. B. and Holroyd, J. A. and Troxler, R. F. and Offner, G. D.}, - year = 1981, - month = {Jan}, - journal = {Biochemical Journal}, - volume = 194, - pages = {137--147}, - url = {https://doi.org/10.1042/bj1940137}, - number = 1, - doi = {10.1042/bj1940137} -} - -@Article{ghosh2020a, - title = {A natural cyanobacterial protein C-phycoerythrin as an Hg2+ selective fluorescent probe in aqueous systems}, - author = {Ghosh, Tonmoy and Chatterjee, Sobhan and Bhayani, Khushbu and Mishra, Sandhya}, - year = 2020, - journal = {New J. Chem.}, - publisher = {The Royal Society of Chemistry}, - volume = 44, - pages = {6601--6609}, - url = {http://dx.doi.org/10.1039/D0NJ01059F}, - doi = {10.1039/D0NJ01059F} -} - -@Article{ghosh2020studies, - title = {Studies on Extraction and Stability of C-Phycoerythrin From a Marine Cyanobacterium}, - author = {Ghosh, Tonmoy and Mishra, Sandhya}, - year = 2020, - journal = {Frontiers in Sustainable Food Systems}, - volume = 4, - pages = 102, - url = {https://www.frontiersin.org/article/10.3389/fsufs.2020.00102}, - doi = {10.3389/fsufs.2020.00102} -} - -@Article{hiroto2017synthesis, - title = {Synthesis and Functionalization of Porphyrins through Organometallic Methodologies}, - author = {Hiroto, Satoru and Miyake, Yoshihiro and Shinokubo, Hiroshi}, - year = 2017, - month = {Feb}, - journal = {Chemical Reviews}, - publisher = {American Chemical Society}, - volume = 117, - pages = {2910--3043}, - url = {https://doi.org/10.1021/acs.chemrev.6b00427}, - number = 4, - doi = {10.1021/acs.chemrev.6b00427} -} - -@Article{watanabe2013phycobilisome, - title = {Phycobilisome: architecture of a light-harvesting supercomplex}, - author = {Watanabe, Mai and Ikeuchi, Masahiko}, - year = 2013, - month = {Oct}, - journal = {Photosynthesis Research}, - volume = 116, - pages = {265--276}, - url = {https://doi.org/10.1007/s11120-013-9905-3}, - number = 2, - doi = {10.1007/s11120-013-9905-3} -} - -@Article{chukhutsina2015cyanobacterial, - title = {Cyanobacterial Light-Harvesting Phycobilisomes Uncouple From Photosystem I During Dark-To-Light Transitions}, - author = {Chukhutsina, Volha and Bersanini, Luca and Aro, Eva-Mari and van Amerongen, Herbert}, - year = 2015, - month = {Sep}, - journal = {Scientific Reports}, - volume = 5, - pages = 14193, - url = {https://doi.org/10.1038/srep14193}, - number = 1, - doi = {10.1038/srep14193} -} - -@InCollection{gantt1980structure, - title = {Structure and Function of Phycobilisomes: Light Harvesting Pigment Complexes in Red and Blue-Green Algae}, - booktitle = {International Review of Cytology}, - publisher = {Academic Press}, - volume = {66}, - pages = {45-80}, - year = {1980}, - doi = {10.1016/S0074-7696(08)61971-3}, - url = {https://www.sciencedirect.com/science/article/pii/S0074769608619713}, - author = {Elisabeth Gantt} -} - -@InBook{kannaujiya2020phycobiliproteins, - title = {Phycobiliproteins in Microalgae: Occurrence, Distribution, and Biosynthesis}, - author = {Kannaujiya, Vinod K. and Singh, Prashant R. and Kumar, Deepak and Sinha, Rajeshwar P.}, - year = 2020, - booktitle = {Pigments from Microalgae Handbook}, - publisher = {Springer International Publishing}, - pages = {43--68}, - url = {https://doi.org/10.1007/978-3-030-50971-2_3}, - address = {Cham}, - isbn = {978-3-030-50971-2}, - doi = {10.1007/978-3-030-50971-2_3} -} - -@Article{kannaujiya2015impacts, - title = {Impacts of varying light regimes on phycobiliproteins of {{\textit{Nostoc}}} sp. {HKAR}-2 and {{\textit{Nostoc}}} sp. {HKAR}-11 isolated from diverse habitats}, - author = {Kannaujiya, Vinod K. and Sinha, Rajeshwar P.}, - year = 2015, - month = {Nov}, - journal = {Protoplasma}, - volume = 252, - pages = {1551--1561}, - url = {https://doi.org/10.1007/s00709-015-0786-5}, - number = 6, - doi = {10.1007/s00709-015-0786-5} -} - -@Article{penn2014secondary, - title = {Secondary metabolite gene expression and interplay of bacterial functions in a tropical freshwater cyanobacterial bloom}, - author = {Penn, Kevin and Wang, Jia and Fernando, Samodha C. and Thompson, Janelle R.}, - year = 2014, - month = {Sep}, - journal = {The ISME Journal}, - volume = 8, - pages = {1866--1878}, - url = {https://doi.org/10.1038/ismej.2014.27}, - number = 9, - doi = {10.1038/ismej.2014.27} -} - -@Article{guttman2012isolation, - title = {Isolation of Bacteria Capable of Growth with 2-Methylisoborneol and Geosmin as the Sole Carbon and Energy Sources}, - author = {Lior Guttman and Jaap van Rijn}, - year = 2012, - journal = {Applied and Environmental Microbiology}, - volume = 78, - pages = {363--370}, - url = {https://journals.asm.org/doi/abs/10.1128/AEM.06333-11}, - number = 2, - doi = {10.1128/AEM.06333-11}, - eprint = {https://journals.asm.org/doi/pdf/10.1128/AEM.06333-11} -} - -@Article{demoulin2019cyanobacteria, - title = {Cyanobacteria evolution: Insight from the fossil record}, - author = {Demoulin, Catherine F. and Lara, Yannick J. and Cornet, Luc and Fran{\c{c}}ois, Camille and Baurain, Denis and Wilmotte, Annick and Javaux, Emmanuelle J.}, - year = 2019, - month = {Aug}, - journal = {Free Radical Biology and Medicine}, - volume = 140, - pages = {206--223}, - url = {https://doi.org/10.1016/j.freeradbiomed.2019.05.007}, - doi = {10.1016/j.freeradbiomed.2019.05.007} -} - -@Article{xiong2007photosynthesis, - title = {Photosynthesis: what color was its origin?}, - author = {Xiong, Jin}, - year = 2007, - month = {Jan}, - journal = {Genome Biology}, - volume = 7, - pages = 245, - url = {https://doi.org/10.1186/gb-2006-7-12-245}, - number = 12, - doi = {10.1186/gb-2006-7-12-245} -} - -@Article{evstigneev1975on, - title = {On the evolution of the photosynthetic pigments}, - author = {Evstigneev, V. B.}, - year = 1975, - month = {Jul}, - journal = {Origins of life}, - volume = 6, - pages = {435--439}, - url = {https://doi.org/10.1007/BF01130346}, - number = 3, - doi = {10.1007/BF01130346} -} - -@Article{adams1999tansley, - title = {Tansley Review No. 107. Heterocyst and akinete differentiation in cyanobacteria}, - author = {ADAMS, DAVID G. and DUGGAN, PAULA S.}, - year = 1999, - journal = {New Phytologist}, - volume = 144, - pages = {3--33}, - url = {https://nph.onlinelibrary.wiley.com/doi/abs/10.1046/j.1469-8137.1999.00505.x}, - number = 1, - doi = {10.1046/j.1469-8137.1999.00505.x}, - eprint = {https://nph.onlinelibrary.wiley.com/doi/pdf/10.1046/j.1469-8137.1999.00505.x} -} - -@Article{hecht2001studies, - title = {Studies on the nonmevalonate pathway to terpenes: The role of the GcpE (IspG) protein}, - author = {Hecht, Stefan and Eisenreich, Wolfgang and Adam, Petra and Amslinger, Sabine and Kis, Klaus and Bacher, Adelbert and Arigoni, Duilio and Rohdich, Felix}, - year = 2001, - journal = {Proceedings of the National Academy of Sciences}, - publisher = {National Academy of Sciences}, - volume = 98, - pages = {14837--14842}, - url = {https://www.pnas.org/content/98/26/14837}, - number = 26, - doi = {10.1073/pnas.201399298} -} - -@Article{schulz2007bacterial, - title = {Bacterial volatiles: the smell of small organisms}, - author = {Schulz, Stefan and Dickschat, Jeroen S.}, - year = 2007, - journal = {Nat. Prod. Rep.}, - publisher = {The Royal Society of Chemistry}, - volume = 24, - pages = {814--842}, - url = {http://dx.doi.org/10.1039/B507392H}, - doi = {10.1039/B507392H} -} - -@Article{dickschat2016bacterial, - title = {Bacterial terpene cyclases}, - author = {Dickschat, Jeroen S.}, - year = 2016, - journal = {Nat. Prod. Rep.}, - publisher = {The Royal Society of Chemistry}, - volume = 33, - pages = {87--110}, - url = {http://dx.doi.org/10.1039/C5NP00102A}, - doi = {10.1039/C5NP00102A} -} - -@Article{mcdowall2007removal, - title = {Removal of geosmin and 2-methylisoborneol through biologically active sand filters}, - author = {McDowall, Bridget and Ho, Lionel and Saint, Christopher and Newcombe, Gayle}, - year = 2007, - journal = {International Journal of Environment and Waste Management}, - volume = 1, - pages = {311--320}, - url = {https://www.inderscienceonline.com/doi/abs/10.1504/IJEWM.2007.015685}, - number = 4, - doi = {10.1504/IJEWM.2007.015685}, - eprint = {https://www.inderscienceonline.com/doi/pdf/10.1504/IJEWM.2007.015685} -} - -@article{zhu2015molecular, - title = {Molecular specificity and detection for {{\textit{Pseudanabaena}}} (cyanobacteria) species based on rbcLX sequences}, - journal = {Biochemical Systematics and Ecology}, - volume = {60}, - pages = {110-115}, - year = {2015}, - issn = {0305-1978}, - doi = {https://doi.org/10.1016/j.bse.2015.04.009}, - url = {https://www.sciencedirect.com/science/article/pii/S030519781500085X}, - author = {Mengling Zhu and Gongliang Yu and Gaofei Song and Jianbo Chang and Chengyan Wan and Renhui Li} -} - -@article{zhu2021responses, - title = {Responses of cyanobacterial aggregate microbial communities to algal blooms}, - journal = {Water Research}, - volume = {196}, - pages = {117014}, - year = {2021}, - issn = {0043-1354}, - doi = {https://doi.org/10.1016/j.watres.2021.117014}, - url = {https://www.sciencedirect.com/science/article/pii/S0043135421002128}, - author = {Congmin Zhu and Junyi Zhang and Xin Wang and Yuqing Yang and Ning Chen and Zuhong Lu and Qinyu Ge and Rui Jiang and Xuegong Zhang and Yunfeng Yang and Ting Chen}, -} - -@article{chakravorty2007detailed, - title = {A detailed analysis of 16S ribosomal RNA gene segments for the diagnosis of pathogenic bacteria}, - journal = {Journal of Microbiological Methods}, - volume = {69}, - number = {2}, - pages = {330-339}, - year = {2007}, - issn = {0167-7012}, - doi = {https://doi.org/10.1016/j.mimet.2007.02.005}, - url = {https://www.sciencedirect.com/science/article/pii/S0167701207000565}, - author = {Soumitesh Chakravorty and Danica Helb and Michele Burday and Nancy Connell and David Alland} -} - -@article{roman2021abundance, - title = {Abundance and environmental host range of the SXT/R391 ICEs in aquatic environmental communities}, - journal = {Environmental Pollution}, - volume = {288}, - pages = {117673}, - year = {2021}, - issn = {0269-7491}, - doi = {https://doi.org/10.1016/j.envpol.2021.117673}, - url = {https://www.sciencedirect.com/science/article/pii/S0269749121012550}, - author = {Veronica L. Roman and Christophe Merlin and Sandrine Baron and Emeline Larvor and Laetitia {Le Devendec} and Marko P.J. Virta and Xavier Bellanger} -} - -@article{tan2010cpcbaigs, - title = {cpcBA-IGS as an effective marker to characterize {{\textit{Microcystis wesenbergii}}} ({Komárek}) {Komárek} in {Kondrateva} (cyanobacteria)}, - journal = {Harmful Algae}, - volume = {9}, - number = {6}, - pages = {607-612}, - year = {2010}, - issn = {1568-9883}, - doi = {https://doi.org/10.1016/j.hal.2010.04.011}, - url = {https://www.sciencedirect.com/science/article/pii/S1568988310000508}, - author = {Wenhua Tan and Yang Liu and Zhongxing Wu and Shen Lin and Gongliang Yu and Boshi Yu and Renhui Li} -} - - -@article{wei2021high, - author = {Wei, Ziyan and Feng, Kai and Wang, Zhujun and Zhang, Yu and Yang, Min and Zhu, Yong-Guan and Virta, Marko P. J. and Deng, Ye}, - title = {High-Throughput Single-Cell Technology Reveals the Contribution of Horizontal Gene Transfer to Typical Antibiotic Resistance Gene Dissemination in Wastewater Treatment Plants}, - journal = {Environmental Science \& Technology}, - volume = {55}, - number = {17}, - pages = {11824-11834}, - year = {2021}, - doi = {10.1021/acs.est.1c01250}, - URL = {https://doi.org/10.1021/acs.est.1c01250}, - eprint = { https://doi.org/10.1021/acs.est.1c01250} -} - -@article{acinas2008phenotypic, - title={Phenotypic and genetic diversification of {{\textit{Pseudanabaena}}} spp. (cyanobacteria)}, - author={ Acinas, Silvia G and Haverkamp, Thomas H A and Huisman, Jef and Stal, Lucas J }, - journal={The ISME Journal}, - volume={3}, - number={1}, - pages={31-46}, - year={2008} -} - -@article{hultman2018host, - author = {Hultman, Jenni and Tamminen, Manu and Pärnänen, Katariina and Cairns, Johannes and Karkman, Antti and Virta, Marko}, - title = "{Host range of antibiotic resistance genes in wastewater treatment plant influent and effluent}", - journal = {FEMS Microbiology Ecology}, - volume = {94}, - number = {4}, - year = {2018}, - month = {03}, - issn = {0168-6496}, - doi = {10.1093/femsec/fiy038}, - url = {https://doi.org/10.1093/femsec/fiy038}, - note = {fiy038}, - eprint = {https://academic.oup.com/femsec/article-pdf/94/4/fiy038/25086250/fiy038.pdf} -} - -@article{woese1977phylogenetic, - author = {Carl R. Woese and George E. Fox }, - title = {Phylogenetic structure of the prokaryotic domain: The primary kingdoms}, - journal = {Proceedings of the National Academy of Sciences}, - volume = {74}, - number = {11}, - pages = {5088-5090}, - year = {1977}, - doi = {10.1073/pnas.74.11.5088}, - URL = {https://www.pnas.org/doi/abs/10.1073/pnas.74.11.5088}, - eprint = {https://www.pnas.org/doi/pdf/10.1073/pnas.74.11.5088} -} - -@article{ning2019general, - author = {Daliang Ning and Ye Deng and James M. Tiedje and Jizhong Zhou }, - title = {A general framework for quantitatively assessing ecological stochasticity}, - journal = {Proceedings of the National Academy of Sciences}, - volume = {116}, - number = {34}, - pages = {16892-16898}, - year = {2019}, - doi = {10.1073/pnas.1904623116}, - URL = {https://www.pnas.org/doi/abs/10.1073/pnas.1904623116}, - eprint = {https://www.pnas.org/doi/pdf/10.1073/pnas.1904623116} -} - -@article{Rajaniemi2005international, - author = "Rajaniemi, Pirjo and Hrouzek, Pavel and Kaštovská, Klára and Willame, Raphaël and Rantala, Anne and Hoffmann, Lucien and Komárek, Jiří and Sivonen, Kaarina", - title = "Phylogenetic and morphological evaluation of the genera {{\textit{Anabaena}}}, {{\textit{Aphanizomenon}}}, {{\textit{Trichormus}}} and {{\textit{Nostoc}}} (Nostocales, Cyanobacteria)", - journal= "International Journal of Systematic and Evolutionary Microbiology", - year = "2005", - volume = "55", - number = "1", - pages = "11-26", - doi = "https://doi.org/10.1099/ijs.0.63276-0", - url = "https://www.microbiologyresearch.org/content/journal/ijsem/10.1099/ijs.0.63276-0", - publisher = "Microbiology Society", - issn = "1466-5034", - type = "Journal Article" -} - -@article{florenza2019uncovering, - author = {Florenza, Javier and Tamminen, Manu and Bertilsson, Stefan }, - title = {Uncovering microbial inter-domain interactions in complex communities}, - journal = {Philosophical Transactions of the Royal Society B: Biological Sciences}, - volume = {374}, - number = {1786}, - pages = {20190087}, - year = {2019}, - doi = {10.1098/rstb.2019.0087}, - URL = {https://royalsocietypublishing.org/doi/abs/10.1098/rstb.2019.0087}, - eprint = {https://royalsocietypublishing.org/doi/pdf/10.1098/rstb.2019.0087} -} - -@article{spencer2016massively, - title = {Massively parallel sequencing of single cells by {epicPCR} links functional genes with phylogenetic markers}, - volume = {10}, - issn = {1751-7370}, - url = {https://doi.org/10.1038/ismej.2015.124}, - doi = {10.1038/ismej.2015.124}, - number = {2}, - journal = {The ISME Journal}, - author = {Spencer, Sarah J and Tamminen, Manu V and Preheim, Sarah P and Guo, Mira T and Briggs, Adrian W and Brito, Ilana L and A Weitz, David and Pitkänen, Leena K and Vigneault, Francois and Virta, Marko PJuhani and Alm, Eric J}, - year = {2016}, - pages = {427--436} -} - -@article{stegen2012stochastic, - title = {Stochastic and deterministic assembly processes in subsurface microbial communities}, - volume = {6}, - issn = {1751-7370}, - url = {https://doi.org/10.1038/ismej.2012.22}, - doi = {10.1038/ismej.2012.22}, - number = {9}, - journal = {The ISME Journal}, - author = {Stegen, James C and Lin, Xueju and Konopka, Allan E and Fredrickson, James K}, - month = sep, - year = {2012}, - pages = {1653--1664}, -} - -@book{taiz2010plant, - title = {Plant Physiology}, - booktitle = {Plant Physiology}, - author = {Taiz, L. and Zeiger, E.}, - year = 2010, - publisher = {Sinauer Associates Inc.}, - pages = {1--782}, - isbn = {978-0-87893-866-7}, - language = {English} -} - -@incollection{koyama1999isopentenyl, - title = {2.04 - Isopentenyl DiphosphateIsomerase and Prenyltransferases}, - editor = {Sir Derek Barton and Koji Nakanishi and Otto Meth-Cohn}, - booktitle = {Comprehensive Natural Products Chemistry}, - publisher = {Pergamon}, - address = {Oxford}, - pages = {69-96}, - year = {1999}, - isbn = {978-0-08-091283-7}, - doi = {https://doi.org/10.1016/B978-0-08-091283-7.00037-0}, - url = {https://www.sciencedirect.com/science/article/pii/B9780080912837000370}, - author = {Tanetoshi Koyama and Kyozo Ogura} -} - -@incollection{su2021dian, - title = {典型产嗅藻的环境行为与产嗅特征}, - editor = {杨敏 and 于建伟等}, - booktitle = {饮用水嗅味问题：来源与控制}, - publisher = {科学出版社}, - pages = {120-161}, - year = {2021}, - isbn = {9787030677112}, - author = {苏命} -} - -@incollection{su2021hu, - title = {湖库型水源地产嗅藻控制策略}, - editor = {杨敏 and 于建伟等}, - booktitle = {饮用水嗅味问题：来源与控制}, - publisher = {科学出版社}, - pages = {162-193}, - year = {2021}, - isbn = {9787030677112}, - author = {苏命} -} - -@article{vranova2013network, - author = {Vranová, Eva and Coman, Diana and Gruissem, Wilhelm}, - title = {Network Analysis of the MVA and MEP Pathways for Isoprenoid Synthesis}, - journal = {Annual Review of Plant Biology}, - volume = {64}, - number = {1}, - pages = {665-700}, - year = {2013}, - doi = {10.1146/annurev-arplant-050312-120116}, - note ={PMID: 23451776}, - URL = {https://doi.org/10.1146/annurev-arplant-050312-120116}, - eprint = {https://doi.org/10.1146/annurev-arplant-050312-120116} -} - -@Article{sonani2018site, - title = {Site, trigger, quenching mechanism and recovery of non-photochemical quenching in cyanobacteria: recent updates}, - author = {Ravi R. Sonani and Alastair Gardiner and Rajesh P. Rastogi and Richard Cogdell and Bruno Robert and Datta Madamwar}, - year = 2018, - month = {mar}, - journal = {Photosynthesis Research}, - publisher = {Springer Science and Business Media {LLC}}, - volume = 137, - pages = {171--180}, - url = {https://doi.org/10.1007/s11120-018-0498-8}, - doi = {10.1007/s11120-018-0498-8}, - number = 2 -} - -@Article{singh2007targeting, - title = {Targeting the Methyl Erythritol Phosphate ({MEP}) Pathway for Novel Antimalarial, Antibacterial and Herbicidal Drug Discovery: Inhibition of 1-Deoxy-D-Xylulose-5-Phosphate Reductoisomerase ({DXR}) Enzyme}, - author = {Nidhi Singh and Gweneal Cheve and Mitchell Avery and Christopher McCurdy}, - year = 2007, - month = {apr}, - journal = {Current Pharmaceutical Design}, - publisher = {Bentham Science Publishers Ltd.}, - volume = 13, - pages = {1161--1177}, - url = {https://doi.org/10.2174/138161207780618939}, - doi = {10.2174/138161207780618939}, - number = 11 -} - -@InCollection{karp1972reducibility, - title = {Reducibility among Combinatorial Problems}, - author = {Richard M. Karp}, - year = 1972, - booktitle = {Complexity of Computer Computations}, - publisher = {Springer {US}}, - pages = {85--103}, - url = {https://doi.org/10.1007/978-1-4684-2001-2_9}, - doi = {10.1007/978-1-4684-2001-2_9} -} - -@Article{davies2014toward, - title = {Toward a photosynthetic microbial platform for terpenoid engineering}, - author = {Fiona K. Davies and Robert E. Jinkerson and Matthew C. Posewitz}, - year = 2014, - journal = {Photosynthesis Research}, - publisher = {Springer Science and Business Media {LLC}}, - volume = 123, - pages = {265--284}, - url = {https://doi.org/10.1007/s11120-014-9979-6}, - doi = {10.1007/s11120-014-9979-6}, - number = 3 -} - -@Article{trigueiro2017cultivation, - title = {Cultivation of three color strains of Gracilaria domingensis in an integrated organic system}, - author = {Thiago Gaban Trigueiro and Dinaelza Castelo Pereira and Aline P. Martins and Pio Colepicolo and Eliane Marinho-Soriano}, - year = 2017, - journal = {International Aquatic Research}, - publisher = {Springer Science and Business Media {LLC}}, - volume = 9, - pages = {225--233}, - url = {https://doi.org/10.1007/s40071-017-0171-4}, - doi = {10.1007/s40071-017-0171-4}, - number = 3 -} - -@Article{ulloa2021the, - title = {The cyanobacterium {{\textit{Prochlorococcus}}} has divergent light-harvesting antennae and may have evolved in a low-oxygen ocean}, - author = {Osvaldo Ulloa and Carlos Henr{\'{\i}}quez-Castillo and Salvador Ram{\'{\i}}rez-Flandes and Alvaro M. Plominsky and Alejandro A. Murillo and Connor Morgan-Lang and Steven J. Hallam and Ramunas Stepanauskas}, - year = 2021, - journal = {Proceedings of the National Academy of Sciences}, - publisher = {Proceedings of the National Academy of Sciences}, - volume = 118, - url = {https://doi.org/10.1073/pnas.2025638118}, - doi = {10.1073/pnas.2025638118}, - number = 11 -} - -@Article{partensky2018comparison, - title = {Comparison of photosynthetic performances of marine picocyanobacteria with different configurations of the oxygen-evolving complex}, - author = {Fr{\'{e}}d{\'{e}}ric Partensky and Daniella Mella-Flores and Christophe Six and Laurence Garczarek and Mirjam Czjzek and Dominique Marie and Eva Kotabová and Kristina Felcmanová and Ondřej Prášil}, - year = 2018, - journal = {Photosynthesis Research}, - publisher = {Springer Science and Business Media {LLC}}, - volume = 138, - pages = {57--71}, - url = {https://doi.org/10.1007/s11120-018-0539-3}, - doi = {10.1007/s11120-018-0539-3}, - number = 1 -} - -@Article{ducruet2009thermoluminescence, - title = {Thermoluminescence: experimental}, - author = {Jean-Marc Ducruet and Imre Vass}, - year = 2009, - journal = {Photosynthesis Research}, - publisher = {Springer Science and Business Media {LLC}}, - volume = 101, - pages = {195--204}, - url = {https://doi.org/10.1007/s11120-009-9436-0}, - doi = {10.1007/s11120-009-9436-0}, - number = {2-3} -} - -@Article{arnold1957are, - title = {{ARE} {CHLOROPLASTS} {SEMICONDUCTORS}?}, - author = {William Arnold and Helen K. Sherwood}, - year = 1957, - journal = {Proceedings of the National Academy of Sciences}, - publisher = {Proceedings of the National Academy of Sciences}, - volume = 43, - pages = {105--114}, - url = {https://doi.org/10.1073/pnas.43.1.105}, - doi = {10.1073/pnas.43.1.105}, - number = 1} - -@Article{partensky2018a, - title = {A novel species of the marine cyanobacterium Acaryochloris with a unique pigment content and lifestyle}, - author = {Fr{\'{e}}d{\'{e}}ric Partensky and Christophe Six and Morgane Ratin and Laurence Garczarek and Daniel Vaulot and Ian Probert and Alexandra Calteau and Priscillia Gourvil and Dominique Marie and Th{\'{e}}ophile Gr{\'{e}}bert and Christiane Bouchier and Sophie Le Panse and Martin Gachenot and Francisco Rodr{\'{\i}}guez and Jos{\'{e}} L. Garrido}, - year = 2018, - journal = {Scientific Reports}, - publisher = {Springer Science and Business Media {LLC}}, - volume = 8, - url = {https://doi.org/10.1038/s41598-018-27542-7}, - doi = {10.1038/s41598-018-27542-7}, - number = 1} - -@Article{korbee2005effect, - title = {Effect of light quality on the accumulation of photosynthetic pigments, proteins and mycosporine-like amino acids in the red alga Porphyra leucosticta (Bangiales, Rhodophyta)}, - author = {Nathalie Korbee and F{\'{e}}lix L. Figueroa and Jos{\'{e}} Aguilera}, - year = 2005, - journal = {Journal of Photochemistry and Photobiology B: Biology}, - publisher = {Elsevier {BV}}, - volume = 80, - pages = {71--78}, - url = {https://doi.org/10.1016/j.jphotobiol.2005.03.002}, - doi = {10.1016/j.jphotobiol.2005.03.002}, - number = 2} - -@Article{oxborough2004imaging, - title = {Imaging of chlorophyll a fluorescence: theoretical and practical aspects of an emerging technique for the monitoring of photosynthetic performance}, - author = {K. Oxborough}, - year = 2004, - journal = {Journal of Experimental Botany}, - publisher = {Oxford University Press ({OUP})}, - volume = 55, - pages = {1195--1205}, - url = {https://doi.org/10.1093/jxb/erh145}, - doi = {10.1093/jxb/erh145}, - number = 400} - -@Article{hsiehlo2019phycocyanin, - title = {Phycocyanin and phycoerythrin: Strategies to improve production yield and chemical stability}, - author = {Ming Hsieh-Lo and Gustavo Castillo and Mario Alberto Ochoa-Becerra and Luis Mojica}, - year = 2019, - journal = {Algal Research}, - publisher = {Elsevier {BV}}, - volume = 42, - pages = 101600, - url = {https://doi.org/10.1016/j.algal.2019.101600}, - doi = {10.1016/j.algal.2019.101600} -} - -@Article{mishra2012effect, - title = {Effect of light quality on the C-phycoerythrin production in marine cyanobacteria {{\textit{Pseudanabaena}}} sp. isolated from {Gujarat} coast, {India}}, - author = {Sanjiv K. Mishra and Anupama Shrivastav and Rahulkumar R. Maurya and Shailesh K. Patidar and Soumya Haldar and Sandhya Mishra}, - year = 2012, - journal = {Protein Expression and Purification}, - publisher = {Elsevier {BV}}, - volume = 81, - pages = {5--10}, - url = {https://doi.org/10.1016/j.pep.2011.08.011}, - doi = {10.1016/j.pep.2011.08.011}, - number = 1} - -@Article{khatoon2018effects, - title = {Effects of different light source and media on growth and production of phycobiliprotein from freshwater cyanobacteria}, - author = {Helena Khatoon and Lai Kok Leong and Norazira Abdu Rahman and Sohel Mian and Hasina Begum and Sanjoy Banerjee and Azizah Endut}, - year = 2018, - journal = {Bioresource Technology}, - publisher = {Elsevier {BV}}, - volume = 249, - pages = {652--658}, - url = {https://doi.org/10.1016/j.biortech.2017.10.052}, - doi = {10.1016/j.biortech.2017.10.052} -} - -@Article{bland2016pigmenttargeted, - title = {Pigment-targeted light wavelength and intensity promotes efficient photoautotrophic growth of Cyanobacteria}, - author = {Erik Bland and Largus T. Angenent}, - year = 2016, - journal = {Bioresource Technology}, - publisher = {Elsevier {BV}}, - volume = 216, - pages = {579--586}, - url = {https://doi.org/10.1016/j.biortech.2016.05.116}, - doi = {10.1016/j.biortech.2016.05.116} -} - -@Article{hu2014photosynthesis, - title = {Photosynthesis, chlorophyll fluorescence characteristics, and chlorophyll content of soybean seedlings under combined stress of bisphenol A and cadmium}, - author = {Huiqing Hu and Lihong Wang and Qingqing Wang and Liya Jiao and Weiqi Hua and Qing Zhou and Xiaohua Huang}, - year = 2014, - journal = {Environmental Toxicology and Chemistry}, - publisher = {Wiley}, - volume = 33, - pages = {2455--2462}, - url = {https://doi.org/10.1002/etc.2720}, - doi = {10.1002/etc.2720}, - number = 11} - -@Article{wu2015growth, - title = {Growth, pigment composition, chlorophyll fluorescence and antioxidant defenses in the red alga Gracilaria lemaneiformis (Gracilariales, Rhodophyta) under light stress}, - author = {Huanyang Wu and Heng Jiang and Chunxiang Liu and Yayun Deng}, - year = 2015, - journal = {South African Journal of Botany}, - publisher = {Elsevier {BV}}, - volume = 100, - pages = {27--32}, - url = {https://doi.org/10.1016/j.sajb.2015.05.017}, - doi = {10.1016/j.sajb.2015.05.017} -} - -@Article{jiquan1998energy, - title = {Energy transfer from C-phycocyanin to chlorophyll a in Triton X-100 reverse micelles}, - author = {Zhao Jiquan and Zhao Jingquan and Xie Jie and Zhang Jianping and Jiang Lijin}, - year = 1998, - journal = {Colloids and Surfaces B: Biointerfaces}, - publisher = {Elsevier {BV}}, - volume = 11, - pages = {9--14}, - url = {https://doi.org/10.1016/s0927-7765%2898%2900028-9}, - doi = {10.1016/s0927-7765(98)00028-9}, - number = {1-2} -} - -@Article{lopezfigueroa1991red, - title = {Red, green and blue light photoreceptors controlling chlorophylla, biliprotein and total protein synthesis in the red {algaChondrus} crispus}, - author = {F. L{\'{o}}pez-Figueroa}, - year = 1991, - journal = {British Phycological Journal}, - publisher = {Informa {UK} Limited}, - volume = 26, - pages = {383--393}, - url = {https://doi.org/10.1080/00071619100650351}, - doi = {10.1080/00071619100650351}, - number = 4} - -@Article{pozacarrion2001acclimation, - title = {Acclimation of photosynthetic pigments and photosynthesis of the cyanobacterium {{\textit{Nostoc}}} sp. strain {UAM}206 to combined fluctuations of irradiance, {pH}, and inorganic carbon availability}, - author = {C{\'{e}}sar Poza-Carri{\'{o}}n and Eduardo Fernández-Valiente and Francisca Fernández Pi{\~{n}}as and Francisco Legan{\'{e}}s}, - year = 2001, - journal = {Journal of Plant Physiology}, - publisher = {Elsevier {BV}}, - volume = 158, - pages = {1455--1461}, - url = {https://doi.org/10.1078/0176-1617-00555}, - doi = {10.1078/0176-1617-00555}, - number = 11} - -@Article{shimura1975phycoerythrin, - title = {Phycoerythrin and photosynthesis of the pelagic blue-green alga Trichodesmium thiebautii in the waters of Kuroshio, Japan}, - author = {S. Shimura and Y. Fujita}, - year = 1975, - journal = {Marine Biology}, - publisher = {Springer Science and Business Media {LLC}}, - volume = 31, - pages = {121--128}, - url = {https://doi.org/10.1007/bf00391624}, - doi = {10.1007/bf00391624}, - number = 2} - -@Article{bickmeyer2019enhancement, - title = {Enhancement of photosynthesis in Synechococcus bacillaris by sponge-derived Ageladine A}, - author = {Ulf Bickmeyer and Silke Thoms and Florian Koch and Liliane Petety Mukagatare and Romaston Silalahi and Franz Josef Sartoris}, - year = 2019, - journal = {{PLOS} {ONE}}, - publisher = {Public Library of Science ({PLoS})}, - volume = 14, - pages = {e0213771}, - url = {https://doi.org/10.1371/journal.pone.0213771}, - doi = {10.1371/journal.pone.0213771}, - number = 3, - editor = {Frank Melzner} -} - -@Article{shinkarev1993insight, - title = {Insight into the relationship of chlorophyll a fluorescence yield to the concentration of its natural quenchers in oxygenic photosynthesis.}, - author = {V P Shinkarev and Govindjee}, - year = 1993, - journal = {Proceedings of the National Academy of Sciences}, - publisher = {Proceedings of the National Academy of Sciences}, - volume = 90, - pages = {7466--7469}, - url = {https://doi.org/10.1073/pnas.90.16.7466}, - doi = {10.1073/pnas.90.16.7466}, - number = 16} - -@InCollection{ting1998characterization, - title = {Characterization of Phycoerythrin Genes in the Chlorophyll A2/B2-Containing Prokaryote, Prochlorococcus {SP}. {MIT}9303}, - author = {Claire Ting and Gabrielle Rocap and Jonathan King and Sallie W. Chisholm}, - year = 1998, - booktitle = {Photosynthesis: Mechanisms and Effects}, - publisher = {Springer Netherlands}, - pages = {225--228}, - url = {https://doi.org/10.1007/978-94-011-3953-3_55}, - doi = {10.1007/978-94-011-3953-3_55} -} - -@Article{schmid1991relationship, - title = {{RELATIONSHIP} {BETWEEN} {LIGHT} {QUALITY} {DEPENDENCE} {AND} {IRRADIANCE} {ADAPTATION} {OF} {PHOTOSYNTHESIS} {IN} Acetabularia mediterranea}, - author = {RAINER SCHMID}, - year = 1991, - journal = {Photochemistry and Photobiology}, - publisher = {Wiley}, - volume = 53, - pages = {347--352}, - url = {https://doi.org/10.1111/j.1751-1097.1991.tb03639.x}, - doi = {10.1111/j.1751-1097.1991.tb03639.x}, - number = 3} - -@Article{huang2017transcriptome, - title = {Transcriptome Sequencing of Gracilariopsis lemaneiformis to Analyze the Genes Related to Optically Active Phycoerythrin Synthesis}, - author = {Xiaoyun Huang and Xiaonan Zang and Fei Wu and Yuming Jin and Haitao Wang and Chang Liu and Yating Ding and Bangxiang He and Dongfang Xiao and Xinwei Song and Zhu Liu}, - year = 2017, - journal = {{PLOS} {ONE}}, - publisher = {Public Library of Science ({PLoS})}, - volume = 12, - pages = {e0170855}, - url = {https://doi.org/10.1371/journal.pone.0170855}, - doi = {10.1371/journal.pone.0170855}, - number = 1, - editor = {Shilin Chen} -} - -@Article{li2000a, - title = {A pigment-binding protein essential for regulation of photosynthetic light harvesting}, - author = {Xiao-Ping Li and Olle Björkman and Connie Shih and Arthur R. Grossman and Magnus Rosenquist and Stefan Jansson and Krishna K. Niyogi}, - year = 2000, - journal = {Nature}, - publisher = {Springer Science and Business Media {LLC}}, - volume = 403, - pages = {391--395}, - url = {https://doi.org/10.1038/35000131}, - doi = {10.1038/35000131}, - number = 6768 -} - -@article{kana1997regulation, - ISSN = {0028646X, 14698137}, - URL = {http://www.jstor.org/stable/2558973}, - author = {Todd M. Kana and Richard J. Geider and Christa Critchley}, - journal = {The New Phytologist}, - number = {4}, - pages = {629--638}, - publisher = {[Wiley, New Phytologist Trust]}, - title = {Regulation of Photosynthetic Pigments in Micro-Algae by Multiple Environmental Factors: A Dynamic Balance Hypothesis}, - doi = {10.2307/2558973}, - volume = {137}, - year = {1997} -} - -@Article{han2017the, - title = {The regulation of photosynthetic pigments in terrestrial Nostoc flagelliforme in response to different light colors}, - author = {Pei-pei Han and Shi-gang Shen and Rong-jun Guo and Shun-yu Yao and Ying Sun and Zhi-lei Tan and Shi-ru Jia}, - year = 2017, - journal = {Algal Research}, - publisher = {Elsevier {BV}}, - volume = 25, - pages = {128--135}, - url = {https://doi.org/10.1016/j.algal.2017.04.009}, - doi = {10.1016/j.algal.2017.04.009} -} - -@Article{collini2022lightharvesting, - title = {Light-Harvesting: The Never-Ending Lesson of Nature}, - author = {Elisabetta Collini}, - year = 2022, - journal = {{ACS} Central Science}, - publisher = {American Chemical Society ({ACS})}, - url = {https://doi.org/10.1021/acscentsci.2c00137}, - doi = {10.1021/acscentsci.2c00137} -} - -@Article{sension2007quantum, - title = {Quantum path to photosynthesis}, - author = {Roseanne J. Sension}, - year = 2007, - journal = {Nature}, - publisher = {Springer Science and Business Media {LLC}}, - volume = 446, - pages = {740--741}, - url = {https://doi.org/10.1038/446740a}, - doi = {10.1038/446740a}, - number = 7137} - -@InCollection{bjorkman1995regulation, - title = {Regulation of Photosynthetic Light Energy Capture, Conversion, and Dissipation in Leaves of Higher Plants}, - author = {O. Björkman and B. Demmig-Adams}, - year = 1995, - booktitle = {Ecophysiology of Photosynthesis}, - publisher = {Springer Berlin Heidelberg}, - pages = {17--47}, - url = {https://doi.org/10.1007/978-3-642-79354-7_2}, - doi = {10.1007/978-3-642-79354-7_2} -} - -@Article{mohsenpour2013luminescent, - title = {Luminescent photobioreactor design for improved algal growth and photosynthetic pigment production through spectral conversion of light}, - author = {Seyedeh Fatemeh Mohsenpour and Nik Willoughby}, - year = 2013, - journal = {Bioresource Technology}, - publisher = {Elsevier {BV}}, - volume = 142, - pages = {147--153}, - url = {https://doi.org/10.1016/j.biortech.2013.05.024}, - doi = {10.1016/j.biortech.2013.05.024} -} - -@Article{rohmer1999the, - title = {The discovery of a mevalonate-independent pathway for isoprenoid biosynthesis in bacteria, algae and higher plants{\textdagger}}, - author = {Michel Rohmer and Michel Rohmer}, - year = 1999, - journal = {Natural Product Reports}, - publisher = {Royal Society of Chemistry ({RSC})}, - volume = 16, - pages = {565--574}, - url = {https://doi.org/10.1039/a709175c}, - doi = {10.1039/a709175c}, - number = 5} - -@Article{rodrguezconcepcion2002elucidation, - title = {Elucidation of the Methylerythritol Phosphate Pathway for Isoprenoid Biosynthesis in Bacteria and Plastids. A Metabolic Milestone Achieved through Genomics}, - author = {Manuel Rodr{\i}{\'}guez-Concepcio{\'}n and Albert Boronat}, - year = 2002, - journal = {Plant Physiology}, - publisher = {Oxford University Press ({OUP})}, - volume = 130, - pages = {1079--1089}, - url = {https://doi.org/10.1104/pp.007138}, - doi = {10.1104/pp.007138}, - number = 3} - -@Article{reinbothe2010chlorophyll, - title = {Chlorophyll biosynthesis: spotlight on protochlorophyllide reduction}, - author = {Christiane Reinbothe and Majida El Bakkouri and Frank Buhr and Norifumi Muraki and Jiro Nomata and Genji Kurisu and Yuichi Fujita and Steffen Reinbothe}, - year = 2010, - journal = {Trends in Plant Science}, - publisher = {Elsevier {BV}}, - volume = 15, - pages = {614--624}, - url = {https://doi.org/10.1016/j.tplants.2010.07.002}, - doi = {10.1016/j.tplants.2010.07.002}, - number = 11} - -@Article{jin2021natural, - title = {Natural Product Gene Clusters in the Filamentous Nostocales Cyanobacterium {HT}-58-2}, - author = {Xiaohe Jin and Eric S. Miller and Jonathan S. Lindsey}, - year = 2021, - journal = {Life}, - publisher = {{MDPI} {AG}}, - volume = 11, - pages = 356, - url = {https://doi.org/10.3390/life11040356}, - doi = {10.3390/life11040356}, - number = 4} - -@Article{pattanaik2015terpenoids, - title = {Terpenoids and Their Biosynthesis in Cyanobacteria}, - author = {Bagmi Pattanaik and Pia Lindberg}, - year = 2015, - journal = {Life}, - publisher = {{MDPI} {AG}}, - volume = 5, - pages = {269--293}, - url = {https://doi.org/10.3390/life5010269}, - doi = {10.3390/life5010269}, - number = 1} - -@InCollection{stirbet2019chlorophyll, - title = {Chlorophyll a Fluorescence in Cyanobacteria: Relation to Photosynthesis}, - author = {Alexandrina Stirbet and Dušan Lazár and George C. Papageorgiou and Govindjee}, - year = 2019, - booktitle = {Cyanobacteria}, - publisher = {Elsevier}, - pages = {79--130}, - url = {https://doi.org/10.1016/b978-0-12-814667-5.00005-2}, - doi = {10.1016/b978-0-12-814667-5.00005-2} -} - -@Article{schagerl2006acclimation, - title = {Acclimation of chlorophyll a and carotenoid levels to different irradiances in four freshwater cyanobacteria}, - author = {Michael Schagerl and Brigitte Müller}, - year = 2006, - journal = {Journal of Plant Physiology}, - publisher = {Elsevier {BV}}, - volume = 163, - pages = {709--716}, - url = {https://doi.org/10.1016/j.jplph.2005.09.015}, - doi = {10.1016/j.jplph.2005.09.015}, - number = 7} - -@Article{jeon2014comparison, - title = {Comparison among dry cell weight, chlorophyll a concentration, and amperometric signal during a batch cultivation of Spirulina maxima}, - author = {Hyeon Jin Jeon and Yong-Keun Choi and Hye Seon Eom and Geun-Ho Kang and Kwang Jin Kim and Yung-Hun Yang and Sang Hyun Lee and Kwang Ho Kim and Sun Jong Kim and Hyung Joo Kim}, - year = 2014, - journal = {Sensors and Actuators B: Chemical}, - publisher = {Elsevier {BV}}, - volume = 205, - pages = {9--11}, - url = {https://doi.org/10.1016/j.snb.2014.08.047}, - doi = {10.1016/j.snb.2014.08.047} -} - -@Article{zavrel2017phenotypic, - title = {Phenotypic characterization of {{\textit{Synechocystis}}} sp. {PCC} 6803 substrains reveals differences in sensitivity to abiotic stress}, - author = {Tomáš Zavřel and Petra O{\v{c}}enášová and Jan {\v{C}}erven{\'{y}}}, - year = 2017, - journal = {{PLOS} {ONE}}, - publisher = {Public Library of Science ({PLoS})}, - volume = 12, - pages = {e0189130}, - url = {https://doi.org/10.1371/journal.pone.0189130}, - doi = {10.1371/journal.pone.0189130}, - number = 12, - editor = {Jon M. Jacobs} -} - -@Article{chislock2021contrasting, - title = {Contrasting patterns of 2-methylisoborneol ({MIB}) vs. geosmin across depth in a drinking water reservoir are mediated by cyanobacteria and actinobacteria}, - author = {Michael F. Chislock and Brianna K. Olsen and Jiyeong Choi and Ash Abebe and Tammy L. Bleier and Alan E. Wilson}, - year = 2021, - journal = {Environmental Science and Pollution Research}, - publisher = {Springer Science and Business Media {LLC}}, - url = {https://doi.org/10.1007/s11356-021-12973-z}, - doi = {10.1007/s11356-021-12973-z} -} - -@Article{naes1985effect, - title = {Effect of Photon Fluence Rate and Specific Growth Rate on Geosmin Production of the Cyanobacterium {\textit{Oscillatoria brevis} (Kütz.) Gom}}, - author = {H. Naes and H. Aarnes and H. C. Utkilen and S. Nilsen and O. M. Skulberg}, - year = 1985, - journal = {Applied and Environmental Microbiology}, - publisher = {American Society for Microbiology}, - volume = 49, - pages = {1538--1540}, - url = {https://doi.org/10.1128/aem.49.6.1538-1540.1985}, - doi = {10.1128/aem.49.6.1538-1540.1985}, - number = 6} - -@Article{naes1988transient, - title = {Transient states of geosmin, pigments, carbohydrates and proteins in continuous cultures of {{\textit{Oscillatoria brevis}}} induced by changes in nitrogen supply}, - author = {Helga Naes and Anton F. Post}, - year = 1988, - journal = {Archives of Microbiology}, - publisher = {Springer Science and Business Media {LLC}}, - volume = 150, - pages = {333--337}, - url = {https://doi.org/10.1007/bf00408303}, - doi = {10.1007/bf00408303}, - number = 4} - -@Article{kim2020molecular, - title = {Molecular Probes to Evaluate the Synthesis and Production Potential of an Odorous Compound (2-methylisoborneol) in Cyanobacteria}, - author = {Keonhee Kim and Youngdae Yoon and Hyukjin Cho and Soon-Jin Hwang}, - year = 2020, - journal = {International Journal of Environmental Research and Public Health}, - publisher = {{MDPI} {AG}}, - volume = 17, - pages = 1933, - url = {https://doi.org/10.3390/ijerph17061933}, - doi = {10.3390/ijerph17061933}, - number = 6} - -@Article{huang2020hydrogen, - title = {Hydrogen peroxide, an ecofriendly remediation method for controlling {{\textit{Microcystis aeruginosa}}} toxic blooms}, - author = {I. Shuo Huang and Paul V Zimba}, - year = 2020, - journal = {Journal of Applied Phycology}, - publisher = {Springer Science and Business Media {LLC}}, - volume = 32, - pages = {3133--3142}, - url = {https://doi.org/10.1007/s10811-020-02086-4}, - doi = {10.1007/s10811-020-02086-4}, - number = 5} - -@Article{shen2020effects, - title = {Effects of elevated nitrogen on the growth and geosmin productivity of Dolichospermum smithii}, - author = {Qingyue Shen and Kazuya Shimizu and Hanchen Miao and Shinya Tsukino and Motoo Utsumi and Zhongfang Lei and Zhenya Zhang and Osamu Nishimura and Yasuhiro Asada and Naoshi Fujimoto and Hirokazu Takanashi and Michihiro Akiba}, - year = 2020, - journal = {Environmental Science and Pollution Research}, - publisher = {Springer Science and Business Media {LLC}}, - volume = 28, - pages = {177--184}, - url = {https://doi.org/10.1007/s11356-020-10429-4}, - doi = {10.1007/s11356-020-10429-4}, - number = 1} - -@Article{shalygin2019odorella, - title = {Odorella benthonicagen. {\&} sp. nov. ({\textit{Pleurocapsales}}, Cyanobacteria): an odor and prolific toxin producer isolated from a {California} aqueduct}, - author = {Sergei Shalygin and I-Shuo Huang and Elle H. Allen and JoAnn M. Burkholder and Paul V. Zimba}, - year = 2019, - journal = {Journal of Phycology}, - publisher = {Wiley}, - volume = 55, - pages = {509--520}, - url = {https://doi.org/10.1111/jpy.12834}, - doi = {10.1111/jpy.12834}, - number = 3, - editor = {T. Mock} -} - -@Article{clercin2019influence, - title = {Influence of Environmental Factors on the Production of {MIB} and Geosmin Metabolites by Bacteria in a Eutrophic Reservoir}, - author = {Nicolas A. Clercin and Gregory K. Druschel}, - year = 2019, - journal = {Water Resources Research}, - publisher = {American Geophysical Union ({AGU})}, - volume = 55, - pages = {5413--5430}, - url = {https://doi.org/10.1029/2018wr023651}, - doi = {10.1029/2018wr023651}, - number = 7} - -@Article{wang2019causality, - title = {Causality analysis and prediction of 2-methylisoborneol production in a reservoir using empirical dynamic modeling}, - author = {Manna Wang and Chihiro Yoshimura and Ayman Allam and Fuminori Kimura and Takamitsu Honma}, - year = 2019, - journal = {Water Research}, - publisher = {Elsevier {BV}}, - volume = 163, - pages = 114864, - url = {https://doi.org/10.1016/j.watres.2019.114864}, - doi = {10.1016/j.watres.2019.114864} -} - -@Article{zhang2017effects, - title = {Effects of nutritional factors on the geosmin production of {{\textit{Lyngbya kuetzingiiUTEX}}} 1547 ({Oscillatoriales, Cyanobacteria})}, - author = {Ting Zhang and Lin Li and Lingling Zheng and Lirong Song}, - year = 2017, - journal = {Phycologia}, - publisher = {Informa {UK} Limited}, - volume = 56, - pages = {221--229}, - url = {https://doi.org/10.2216/16-98.1}, - doi = {10.2216/16-98.1}, - number = 2 -} - -@Article{zhang2008effects, - title = {Effects of temperature and light on the growth and geosmin production of {{\textit{Lyngbya kuetzingii}}} (Cyanophyta)}, - author = {Ting Zhang and Lin Li and Lirong Song and Wei Chen}, - year = 2008, - journal = {Journal of Applied Phycology}, - publisher = {Springer Science and Business Media {LLC}}, - volume = 21, - pages = {279--285}, - url = {https://doi.org/10.1007/s10811-008-9363-z}, - doi = {10.1007/s10811-008-9363-z}, - number = 3} - -@Article{ren2022metagenomics, - title = {Metagenomics reveals bacterioplankton community adaptation to long-term thermal pollution through the strategy of functional regulation in a subtropical bay}, - author = {Lijuan Ren and Zhe Lu and Xiaomin Xia and Yuyang Peng and Sanqiang Gong and Xingyu Song and Erik Jeppesen and Bo-ping Han and Qinglong L. Wu}, - year = 2022, - journal = {Water Research}, - publisher = {Elsevier {BV}}, - volume = 216, - pages = 118298, - url = {https://doi.org/10.1016/j.watres.2022.118298}, - doi = {10.1016/j.watres.2022.118298} -} - -@Article{jiang2007geosmin, - title = {Geosmin Biosynthesis. Mechanism of the Fragmentation-Rearrangement in the Conversion of Germacradienol to Geosmin}, - author = {Jiaoyang Jiang and David E. Cane}, - year = 2007, - journal = {Journal of the American Chemical Society}, - publisher = {American Chemical Society ({ACS})}, - volume = 130, - pages = {428--429}, - url = {https://doi.org/10.1021/ja077792i}, - doi = {10.1021/ja077792i}, - number = 2} - -@Article{zhang2022importance, - title = {Importance and vulnerability of lakes and reservoirs supporting drinking water in {China}}, - author = {Yunlin Zhang and Jianming Deng and Boqiang Qin and Guangwei Zhu and Yinjun Zhang and Erik Jeppesen and Yindong Tong}, - year = 2022, - journal = {Fundamental Research}, - publisher = {Elsevier {BV}}, - url = {https://doi.org/10.1016/j.fmre.2022.01.035}, - doi = {10.1016/j.fmre.2022.01.035} -} - -@Article{aguilera2000light, - title = {Light quality effect on photosynthesis and efficiency of carbon assimilation in the red alga Porphyra leucosticta}, - author = {Jos{\'{e}} Aguilera and Francisco J. and L. Gordillo and Ulf Karsten and F{\'{e}}lix L. Figueroa and F. Xavier Niell}, - year = 2000, - journal = {Journal of Plant Physiology}, - publisher = {Elsevier {BV}}, - volume = 157, - pages = {86--92}, - url = {https://doi.org/10.1016/s0176-1617%2800%2980140-6}, - doi = {10.1016/s0176-1617(00)80140-6}, - number = 1} - -@Article{shafiq2021crop, - title = {Crop photosynthetic response to light quality and light intensity}, - author = {Iram SHAFIQ and Sajad HUSSAIN and Muhammad Ali RAZA and Nasir IQBAL and Muhammad Ahsan ASGHAR and Ali RAZA and Yuan-fang FAN and Maryam MUMTAZ and Muhammad SHOAIB and Muhammad ANSAR and Abdul MANAF and Wen-yu YANG and Feng YANG}, - year = 2021, - journal = {Journal of Integrative Agriculture}, - publisher = {Elsevier {BV}}, - volume = 20, - pages = {4--23}, - url = {https://doi.org/10.1016/s2095-3119%2820%2963227-0}, - doi = {10.1016/s2095-3119(20)63227-0}, - number = 1} - -@Article{pandit2017introduction, - title = {Introduction: light harvesting for photosynthesis}, - author = {Anjali Pandit and Ivo H. M. van Stokkum and Herbert van Amerongen and Roberta Croce}, - year = 2017, - journal = {Photosynthesis Research}, - publisher = {Springer Science and Business Media {LLC}}, - volume = 135, - pages = {1--2}, - url = {https://doi.org/10.1007/s11120-017-0457-9}, - doi = {10.1007/s11120-017-0457-9}, - number = {1-3} -} - -@Article{lokstein2021photosynthetic, - title = {Photosynthetic Light-Harvesting (Antenna) Complexes{\textemdash}Structures and Functions}, - author = {Heiko Lokstein and Gernot Renger and Jan Götze}, - year = 2021, - journal = {Molecules}, - publisher = {{MDPI} {AG}}, - volume = 26, - pages = 3378, - url = {https://doi.org/10.3390/molecules26113378}, - doi = {10.3390/molecules26113378}, - number = 11} - -@Article{mitra2012modulation, - title = {Modulation of the light-harvesting chlorophyll antenna size in Chlamydomonas reinhardtii by {TLA}1 gene over-expression and {RNA} interference}, - author = {Mautusi Mitra and Henning Kirst and David Dewez and Anastasios Melis}, - year = 2012, - journal = {Philosophical Transactions of the Royal Society B: Biological Sciences}, - publisher = {The Royal Society}, - volume = 367, - pages = {3430--3443}, - url = {https://doi.org/10.1098/rstb.2012.0229}, - doi = {10.1098/rstb.2012.0229}, - number = 1608} - -@Article{kim2022simultaneous, - title = {Simultaneous feature engineering and interpretation: Forecasting harmful algal blooms using a deep learning approach}, - author = {TaeHo Kim and Jihoon Shin and DoYeon Lee and YoungWoo Kim and Eunhye Na and Jong-hwan Park and Chaehong Lim and YoonKyung Cha}, - year = 2022, - journal = {Water Research}, - publisher = {Elsevier {BV}}, - volume = 215, - pages = 118289, - url = {https://doi.org/10.1016/j.watres.2022.118289}, - doi = {10.1016/j.watres.2022.118289} -} - -@Article{duan2022cyanotoxinencoding, - title = {Cyanotoxin-encoding genes as powerful predictors of cyanotoxin production during harmful cyanobacterial blooms in an inland freshwater Lake: Evaluating a novel early-warning system}, - author = {Xiaodi Duan and Chiqian Zhang and Ian Struewing and Xiang Li and Joel Allen and Jingrang Lu}, - year = 2022, - journal = {Science of The Total Environment}, - publisher = {Elsevier {BV}}, - pages = 154568, - url = {https://doi.org/10.1016/j.scitotenv.2022.154568}, - doi = {10.1016/j.scitotenv.2022.154568} -} - -@InCollection{hayashi2003ultrafast, - title = {Ultrafast Spectroscopy and its Applications}, - author = {M. Hayashi and Y.M. Chang and T.K. Wang and S.H. Lin and Joseph L. Knee}, - year = 2003, - booktitle = {Encyclopedia of Physical Science and Technology}, - publisher = {Elsevier}, - pages = {217--226}, - url = {https://doi.org/10.1016/b0-12-227410-5/00797-3}, - doi = {10.1016/b0-12-227410-5/00797-3} -} - -@Article{ho2017light, - title = {Light regulation of pigment and photosystem biosynthesis in cyanobacteria}, - author = {Ming-Yang Ho and Nathan T Soulier and Daniel P Canniffe and Gaozhong Shen and Donald A Bryant}, - year = 2017, - journal = {Current Opinion in Plant Biology}, - publisher = {Elsevier {BV}}, - volume = 37, - pages = {24--33}, - url = {https://doi.org/10.1016/j.pbi.2017.03.006}, - doi = {10.1016/j.pbi.2017.03.006} -} - -@Article{mullineaux2014electron, - title = {Electron transport and light-harvesting switches in cyanobacteria}, - author = {Conrad W. Mullineaux}, - year = 2014, - journal = {Frontiers in Plant Science}, - publisher = {Frontiers Media {SA}}, - volume = 5, - url = {https://doi.org/10.3389/fpls.2014.00007}, - doi = {10.3389/fpls.2014.00007} -} - -@Article{liu2013phycobilisomes, - title = {Phycobilisomes Supply Excitations to Both Photosystems in a Megacomplex in Cyanobacteria}, - author = {Haijun Liu and Hao Zhang and Dariusz M. Niedzwiedzki and Mindy Prado and Guannan He and Michael L. Gross and Robert E. Blankenship}, - year = 2013, - journal = {Science}, - publisher = {American Association for the Advancement of Science ({AAAS})}, - volume = 342, - pages = {1104--1107}, - url = {https://doi.org/10.1126/science.1242321}, - doi = {10.1126/science.1242321}, - number = 6162} - -@Article{watanabe2014attachment, - title = {Attachment of phycobilisomes in an antenna{\textendash}photosystem I supercomplex of cyanobacteria}, - author = {Mai Watanabe and Dmitry A. Semchonok and Mariam T. Webber-Birungi and Shigeki Ehira and Kumiko Kondo and Rei Narikawa and Masayuki Ohmori and Egbert J. Boekema and Masahiko Ikeuchi}, - year = 2014, - journal = {Proceedings of the National Academy of Sciences}, - publisher = {Proceedings of the National Academy of Sciences}, - volume = 111, - pages = {2512--2517}, - url = {https://doi.org/10.1073/pnas.1320599111}, - doi = {10.1073/pnas.1320599111}, - number = 7} - -@Article{sobotka2013making, - title = {Making proteins green biosynthesis of chlorophyll-binding proteins in cyanobacteria}, - author = {Roman Sobotka}, - year = 2013, - journal = {Photosynthesis Research}, - publisher = {Springer Science and Business Media {LLC}}, - volume = 119, - pages = {223--232}, - url = {https://doi.org/10.1007/s11120-013-9797-2}, - doi = {10.1007/s11120-013-9797-2}, - number = {1-2} -} - -@Article{figueroa1995red, - title = {Red and blue light regulation of growth and photosynthetic metabolism in {{\textit{Porphyra umbilicalis}}} ({Bangiales, Rhodophyta})}, - author = {F{\'{e}}lix L. Figueroa and Jos{\'{e}} Aguilera and F. Xavier Niell}, - year = 1995, - journal = {European Journal of Phycology}, - publisher = {Informa {UK} Limited}, - volume = 30, - pages = {11--18}, - url = {https://doi.org/10.1080/09670269500650761}, - doi = {10.1080/09670269500650761}, - number = 1} - -@Article{mazel1986green, - title = {Green light induces transcription of the phycoerythrin operon in the {cyanobacteriumCalothrix}7601}, - author = {Didier Mazel and G{\'{e}}rard Guglielmi and Jean Houmard and Walter Sidler and Donald A. Bryant and Nicole Tandeau de Marsac}, - year = 1986, - journal = {Nucleic Acids Research}, - publisher = {Oxford University Press ({OUP})}, - volume = 14, - pages = {8279--8290}, - url = {https://doi.org/10.1093/nar/14.21.8279}, - doi = {10.1093/nar/14.21.8279}, - number = 21} - -@Article{wiltbank2019diverse, - title = {Diverse light responses of cyanobacteria mediated by phytochrome superfamily photoreceptors}, - author = {Lisa B. Wiltbank and David M. Kehoe}, - year = 2019, - journal = {Nature Reviews Microbiology}, - publisher = {Springer Science and Business Media {LLC}}, - volume = 17, - pages = {37--50}, - url = {https://doi.org/10.1038/s41579-018-0110-4}, - doi = {10.1038/s41579-018-0110-4}, - number = 1} - -@Article{bennett1973complementary, - title = {{COMPLEMENTARY} {CHROMATIC} {ADAPTATION} {IN} A {FILAMENTOUS} {BLUE}-{GREEN} {ALGA}}, - author = {Allen Bennett and Lawrence Bogorad}, - year = 1973, - journal = {Journal of Cell Biology}, - publisher = {Rockefeller University Press}, - volume = 58, - pages = {419--435}, - url = {https://doi.org/10.1083/jcb.58.2.419}, - doi = {10.1083/jcb.58.2.419}, - number = 2} - -@Article{oren2021redfarred, - title = {Red/far-red light signals regulate the activity of the carbon-concentrating mechanism in cyanobacteria}, - author = {Nadav Oren and Stefan Timm and Marcus Frank and Oliver Mantovani and Omer Murik and Martin Hagemann}, - year = 2021, - journal = {Science Advances}, - publisher = {American Association for the Advancement of Science ({AAAS})}, - volume = 7, - url = {https://doi.org/10.1126/sciadv.abg0435}, - doi = {10.1126/sciadv.abg0435}, - number = 34} - -@Article{hirose2010cyanobacteriochrome, - title = {Cyanobacteriochrome {CcaS} regulates phycoerythrin accumulation in {{\textit{Nostoc punctiforme}}}, a group {II} chromatic adapter}, - author = {Yuu Hirose and Rei Narikawa and Mitsunori Katayama and Masahiko Ikeuchi}, - year = 2010, - journal = {Proceedings of the National Academy of Sciences}, - publisher = {Proceedings of the National Academy of Sciences}, - volume = 107, - pages = {8854--8859}, - url = {https://doi.org/10.1073/pnas.1000177107}, - doi = {10.1073/pnas.1000177107}, - number = 19} - -@Article{mi2020the, - title = {The formation of a metalimnetic oxygen minimum exemplifies how ecosystem dynamics shape biogeochemical processes: A modelling study}, - author = {Chenxi Mi and Tom Shatwell and Jun Ma and Valerie Carolin Wentzky and Bertram Boehrer and Yaqian Xu and Karsten Rinke}, - year = 2020, - journal = {Water Research}, - publisher = {Elsevier {BV}}, - volume = 175, - pages = 115701, - url = {https://doi.org/10.1016/j.watres.2020.115701}, - doi = {10.1016/j.watres.2020.115701} -} - -@Article{han2016applying, - title = {Applying the strategy of light environment control to improve the biomass and polysaccharide production of Nostoc flagelliforme}, - author = {Pei-pei Han and Shi-gang Shen and Hui-Yan Wang and Shun-yu Yao and Zhi-lei Tan and Cheng Zhong and Shi-ru Jia}, - year = 2016, - journal = {Journal of Applied Phycology}, - publisher = {Springer Science and Business Media {LLC}}, - volume = 29, - pages = {55--65}, - url = {https://doi.org/10.1007/s10811-016-0963-8}, - doi = {10.1007/s10811-016-0963-8}, - number = 1} - -@Article{bezy2011lightdependent, - title = {Light-dependent attenuation of phycoerythrin gene expression reveals convergent evolution of green light sensing in cyanobacteria}, - author = {Ryan P. Bezy and Lisa Wiltbank and David M. Kehoe}, - year = 2011, - journal = {Proceedings of the National Academy of Sciences}, - publisher = {Proceedings of the National Academy of Sciences}, - volume = 108, - pages = {18542--18547}, - url = {https://doi.org/10.1073/pnas.1107427108}, - doi = {10.1073/pnas.1107427108}, - number = 45} - -@Article{gutu2012emerging, - title = {Emerging Perspectives on the Mechanisms, Regulation, and Distribution of Light Color Acclimation in Cyanobacteria}, - author = {Andrian Gutu and David M. Kehoe}, - year = 2012, - journal = {Molecular Plant}, - publisher = {Elsevier {BV}}, - volume = 5, - pages = {1--13}, - url = {https://doi.org/10.1093/mp/ssr054}, - doi = {10.1093/mp/ssr054}, - number = 1} - -@Article{kehoe2006responding, - title = {Responding to Color: The Regulation of Complementary Chromatic Adaptation}, - author = {David M. Kehoe and Andrian Gutu}, - year = 2006, - journal = {Annual Review of Plant Biology}, - publisher = {Annual Reviews}, - volume = 57, - pages = {127--150}, - url = {https://doi.org/10.1146/annurev.arplant.57.032905.105215}, - doi = {10.1146/annurev.arplant.57.032905.105215}, - number = 1 -} - -@book{bryant1994molecular, - doi = {10.1007/978-94-011-0227-8}, - url = {https://doi.org/10.1007/978-94-011-0227-8}, - year = {1994}, - publisher = {Springer Netherlands}, - editor = {Donald A. Bryant}, - title = {The Molecular Biology of Cyanobacteria} -} -@Article{kopf2015expression, - title = {Expression profiling of the bloom-forming cyanobacterium Nodularia {CCY}9414 under light and oxidative stress conditions}, - author = {Matthias Kopf and Fred Möke and Hermann Bauwe and Wolfgang R Hess and Martin Hagemann}, - year = 2015, - journal = {The {ISME} Journal}, - publisher = {Springer Science and Business Media {LLC}}, - volume = 9, - pages = {2139--2152}, - url = {https://doi.org/10.1038/ismej.2015.16}, - doi = {10.1038/ismej.2015.16}, - number = 10} - -@Article{haney2019fremyella, - title = {Fremyella diplosiphon}, - author = {Allissa M. Haney and David M. Kehoe}, - year = 2019, - journal = {Trends in Microbiology}, - publisher = {Elsevier {BV}}, - volume = 27, - pages = {562--563}, - url = {https://doi.org/10.1016/j.tim.2019.01.011}, - doi = {10.1016/j.tim.2019.01.011}, - number = 6} - -@Article{toomingklunderud2013from, - title = {From Green to Red: Horizontal Gene Transfer of the Phycoerythrin Gene Cluster between {{\textit{Planktothrix}}} Strains}, - author = {Ave Tooming-Klunderud and Hanne Sogge and Trine Ballestad Rounge and Alexander J. Nederbragt and Karin Lagesen and Gernot Glöckner and Paul K. Hayes and Thomas Rohrlack and Kjetill S. Jakobsen}, - year = 2013, - journal = {Applied and Environmental Microbiology}, - publisher = {American Society for Microbiology}, - volume = 79, - pages = {6803--6812}, - url = {https://doi.org/10.1128/aem.01455-13}, - doi = {10.1128/aem.01455-13}, - number = 21} - -@Article{silsbe2012modeling, - title = {Modeling the irradiance dependency of the quantum efficiency of photosynthesis}, - author = {Greg M. Silsbe and Jacco C. Kromkamp}, - year = 2012, - journal = {Limnology and Oceanography: Methods}, - publisher = {Wiley}, - volume = 10, - pages = {645--652}, - url = {https://doi.org/10.4319/lom.2012.10.645}, - doi = {10.4319/lom.2012.10.645}, - number = 9} - -@Article{wu2016effect, - title = {Effect of Different Light Qualities on Growth, Pigment Content, Chlorophyll Fluorescence, and Antioxidant Enzyme Activity in the Red {AlgaPyropia} haitanensis(Bangiales, Rhodophyta)}, - author = {Huanyang Wu}, - year = 2016, - journal = {{BioMed} Research International}, - publisher = {Hindawi Limited}, - volume = 2016, - pages = {1--8}, - url = {https://doi.org/10.1155/2016/7383918}, - doi = {10.1155/2016/7383918} -} - -@Article{blanco2013composition, - title = {Composition of carbon, nitrogen and phosphorus in single cells of three filamentous cyanobacteria using nuclear microprobe and traditional techniques}, - author = {E P{\'{e}}rez Blanco and C Karlsson and J Pallon and E Gran{\'{e}}li}, - year = 2013, - journal = {Aquatic Microbial Ecology}, - publisher = {Inter-Research Science Center}, - volume = 71, - pages = {91--97}, - url = {https://doi.org/10.3354/ame01665}, - doi = {10.3354/ame01665}, - number = 1 -} - -@Article{whitton1991cellbound, - title = {Cell-bound and extracellular phosphatase activities of cyanobacterial isolates}, - author = {B. A. Whitton and S. L. J. Grainger and G. R. W. Hawley and J. W. Simon}, - year = 1991, - journal = {Microbial Ecology}, - publisher = {Springer Science and Business Media {LLC}}, - volume = 21, - pages = {85--98}, - url = {https://doi.org/10.1007/bf02539146}, - doi = {10.1007/bf02539146}, - number = 1 -} - -@InCollection{voros1998freshwater, - title = {Freshwater picocyanobacteria along a trophic gradient and light quality range}, - author = {Lajos Vörös and Cristiana Callieri and Katalin V.-Balogh and Roberto Bertoni}, - year = 1998, - booktitle = {Phytoplankton and Trophic Gradients}, - publisher = {Springer Netherlands}, - pages = {117--125}, - url = {https://doi.org/10.1007/978-94-017-2668-9_10}, - doi = {10.1007/978-94-017-2668-9_10} -} - -@Article{ikeuchi2008cyanobacteriochromes, - title = {Cyanobacteriochromes: a new superfamily of tetrapyrrole-binding photoreceptors in cyanobacteria}, - author = {Masahiko Ikeuchi and Takami Ishizuka}, - year = 2008, - journal = {Photochemical {\&} Photobiological Sciences}, - publisher = {Springer Science and Business Media {LLC}}, - volume = 7, - pages = 1159, - url = {https://doi.org/10.1039/b802660m}, - doi = {10.1039/b802660m}, - number = 10} - -@Article{stadnichuk2015cyanobacterial, - title = {Cyanobacterial phycobilisomes and phycobiliproteins}, - author = {I. N. Stadnichuk and P. M. Krasilnikov and D. V. Zlenko}, - year = 2015, - journal = {Microbiology}, - publisher = {Pleiades Publishing Ltd}, - volume = 84, - pages = {101--111}, - url = {https://doi.org/10.1134/s0026261715020150}, - doi = {10.1134/s0026261715020150}, - number = 2} - -@Article{zheng2021structural, - title = {Structural insight into the mechanism of energy transfer in cyanobacterial phycobilisomes}, - author = {Lvqin Zheng and Zhenggao Zheng and Xiying Li and Guopeng Wang and Kun Zhang and Peijun Wei and Jindong Zhao and Ning Gao}, - year = 2021, - journal = {Nature Communications}, - publisher = {Springer Science and Business Media {LLC}}, - volume = 12, - url = {https://doi.org/10.1038/s41467-021-25813-y}, - doi = {10.1038/s41467-021-25813-y}, - number = 1} - -@InCollection{mimuro1999structure, - title = {Structure and Function of Phycobilisomes}, - author = {Mamoru Mimuro and Hiroto Kikuchi and Akio Murakami}, - year = 1999, - booktitle = {Concepts in Photobiology}, - publisher = {Springer Netherlands}, - pages = {104--135}, - url = {https://doi.org/10.1007/978-94-011-4832-0_5}, - doi = {10.1007/978-94-011-4832-0_5} -} - -@Article{ocarra1980the, - title = {The native forms of the phycobilin chromophores of algal biliproteins. A clarification}, - author = {P O{\textquotesingle}Carra and R F Murphy and S D Killilea}, - year = 1980, - journal = {Biochemical Journal}, - publisher = {Portland Press Ltd.}, - volume = 187, - pages = {303--309}, - url = {https://doi.org/10.1042/bj1870303}, - doi = {10.1042/bj1870303}, - number = 2} - -@Article{brown2010polyphasic, - title = {Polyphasic Characterization of a Thermotolerant Siderophilic Filamentous Cyanobacterium That Produces Intracellular Iron Deposits}, - author = {Igor I. Brown and Donald A. Bryant and Dale Casamatta and Kathie L. Thomas-Keprta and Svetlana A. Sarkisova and Gaozhong Shen and Joel E. Graham and Eric S. Boyd and John W. Peters and Daniel H. Garrison and David S. McKay}, - year = 2010, - journal = {Applied and Environmental Microbiology}, - publisher = {American Society for Microbiology}, - volume = 76, - pages = {6664--6672}, - url = {https://doi.org/10.1128/aem.00662-10}, - doi = {10.1128/aem.00662-10}, - number = 19 -} - -@Article{shen2022temperature, - title = {Temperature affects growth, geosmin/2-methylisoborneol production, and gene expression in two cyanobacterial species}, - author = {Qingyue Shen and Qian Wang and Hanchen Miao and Marie Shimada and Motoo Utsumi and Zhongfang Lei and Zhenya Zhang and Osamu Nishimura and Yasuhiro Asada and Naoshi Fujimoto and Hirokazu Takanashi and Michihiro Akiba and Kazuya Shimizu}, - year = 2022, - journal = {Environmental Science and Pollution Research}, - publisher = {Springer Science and Business Media {LLC}}, - volume = 29, - pages = {12017--12026}, - url = {https://doi.org/10.1007/s11356-021-16593-5}, - doi = {10.1007/s11356-021-16593-5}, - number = 8 -} - -@Article{wu2022seasonal, - title = {Seasonal dynamics of odor compounds concentration driven by phytoplankton succession in a subtropical drinking water reservoir, southeast {China}}, - author = {Tianhao Wu and Guangwei Zhu and Zicong Wang and Mengyuan Zhu and Hai Xu}, - year = 2022, - journal = {Journal of Hazardous Materials}, - publisher = {Elsevier {BV}}, - volume = 425, - pages = 128056, - url = {https://doi.org/10.1016/j.jhazmat.2021.128056}, - doi = {10.1016/j.jhazmat.2021.128056} -} - -@Article{clercin2022prevalence, - title = {Prevalence of Actinobacteria in the production of 2-methylisoborneol and geosmin, over Cyanobacteria in a temperate eutrophic reservoir}, - author = {Nicolas A. Clercin and Ioanna Koltsidou and Christine J. Picard and Gregory K. Druschel}, - year = 2022, - journal = {Chemical Engineering Journal Advances}, - publisher = {Elsevier {BV}}, - volume = 9, - pages = 100226, - url = {https://doi.org/10.1016/j.ceja.2021.100226}, - doi = {10.1016/j.ceja.2021.100226} -} - -@Article{he2022water, - title = {Water clarity mapping of global lakes using a novel hybrid deep-learning-based recurrent model with Landsat {OLI} images}, - author = {Yuan He and Zheng Lu and Weijia Wang and Dong Zhang and Yunlin Zhang and Boqiang Qin and Kun Shi and Xiaofan Yang}, - year = 2022, - journal = {Water Research}, - publisher = {Elsevier {BV}}, - volume = 215, - pages = 118241, - url = {https://doi.org/10.1016/j.watres.2022.118241}, - doi = {10.1016/j.watres.2022.118241} -} - -@Article{sandrini2016rapid, - title = {Rapid adaptation of harmful cyanobacteria to rising {CO}$_2$}, - author = {Giovanni Sandrini and Xing Ji and Jolanda M. H. Verspagen and Robert P. Tann and Pieter C. Slot and Veerle M. Luimstra and J. Merijn Schuurmans and Hans C. P. Matthijs and Jef Huisman}, - year = 2016, - journal = {Proceedings of the National Academy of Sciences}, - publisher = {Proceedings of the National Academy of Sciences}, - volume = 113, - pages = {9315--9320}, - url = {https://doi.org/10.1073/pnas.1602435113}, - doi = {10.1073/pnas.1602435113}, - number = 33} - -@Article{gaget2022benthic, - title = {Benthic cyanobacteria: A utility-centred field study}, - author = {Virginie Gaget and Husein Almuhtaram and Faith Kibuye and Peter Hobson and Arash Zamyadi and Eric Wert and Justin D. Brookes}, - year = 2022, - journal = {Harmful Algae}, - publisher = {Elsevier {BV}}, - volume = 113, - pages = 102185, - url = {https://doi.org/10.1016/j.hal.2022.102185}, - doi = {10.1016/j.hal.2022.102185} -} - -@Article{huang2020the, - title = {The magnitude and drivers of harmful algal blooms in {China}'s lakes and reservoirs: A national-scale characterization}, - author = {Jiacong Huang and Yinjun Zhang and George B. Arhonditsis and Junfeng Gao and Qiuwen Chen and Jian Peng}, - year = 2020, - journal = {Water Research}, - publisher = {Elsevier {BV}}, - volume = 181, - pages = 115902, - url = {https://doi.org/10.1016/j.watres.2020.115902}, - doi = {10.1016/j.watres.2020.115902} -} - -@Article{wu2021effects, - title = {Effects of algae proliferation and density current on the vertical distribution of odor compounds in drinking water reservoirs in summer}, - author = {Tianhao Wu and Guangwei Zhu and Mengyuan Zhu and Hai Xu and Jun Yang and Xianfu Zhao}, - year = 2021, - journal = {Environmental Pollution}, - publisher = {Elsevier {BV}}, - volume = 288, - pages = 117683, - url = {https://doi.org/10.1016/j.envpol.2021.117683}, - doi = {10.1016/j.envpol.2021.117683} -} - -@Article{zou2020quantifying, - title = {Quantifying the dependence of cyanobacterial growth to nutrient for the eutrophication management of temperate-subtropical shallow lakes}, - author = {Wei Zou and Guangwei Zhu and Yongjiu Cai and Hai Xu and Mengyuan Zhu and Zhijun Gong and Yunlin Zhang and Boqiang Qin}, - year = 2020, - journal = {Water Research}, - publisher = {Elsevier {BV}}, - volume = 177, - pages = 115806, - url = {https://doi.org/10.1016/j.watres.2020.115806}, - doi = {10.1016/j.watres.2020.115806} -} - -@Article{xu2009nitrogen, - title = {Nitrogen and phosphorus inputs control phytoplankton growth in eutrophic {Lake Taihu}, {China}}, - author = {Hai Xu and Hans W. Paerl and Boqiang Qin and Guangwei Zhu and Guang Gaoa}, - year = 2009, - journal = {Limnology and Oceanography}, - publisher = {Wiley}, - volume = 55, - pages = {420--432}, - url = {https://doi.org/10.4319/lo.2010.55.1.0420}, - doi = {10.4319/lo.2010.55.1.0420}, - number = 1} - -@Article{hassett2021an, - title = {An experimental evaluation of the efficacy of imaging flow cytometry ({FlowCam}) for detecting invasive Dreissened and Corbiculid bivalve veligers}, - author = {Whitney Hassett and Julie Zimmerman and Gretchen Rollwagen-Bollens and Stephen M. Bollens and Timothy D. Counihan}, - year = 2021, - journal = {Lake and Reservoir Management}, - publisher = {Informa {UK} Limited}, - volume = 37, - pages = {406--417}, - url = {https://doi.org/10.1080/10402381.2021.1961176}, - doi = {10.1080/10402381.2021.1961176}, - number = 4} - -@Article{qin2019flexibility, - title = {Flexibility and intensity of global water use}, - author = {Yue Qin and Nathaniel D. Mueller and Stefan Siebert and Robert B. Jackson and Amir AghaKouchak and Julie B. Zimmerman and Dan Tong and Chaopeng Hong and Steven J. Davis}, - year = 2019, - journal = {Nature Sustainability}, - publisher = {Springer Science and Business Media {LLC}}, - volume = 2, - pages = {515--523}, - url = {https://doi.org/10.1038/s41893-019-0294-2}, - doi = {10.1038/s41893-019-0294-2}, - number = 6} - -@Article{molot2021low, - title = {Low sediment redox promotes cyanobacteria blooms across a trophic range: implications for management}, - author = {Lewis A. Molot and Sherry L. Schiff and Jason J. Venkiteswaran and Helen M. Baulch and Scott N. Higgins and Arthur Zastepa and Mark J. Verschoor and Daniel Walters}, - year = 2021, - journal = {Lake and Reservoir Management}, - publisher = {Informa {UK} Limited}, - pages = {1--33}, - url = {https://doi.org/10.1080/10402381.2020.1854400}, - doi = {10.1080/10402381.2020.1854400} -} - -@Article{grant2021attribution, - title = {Attribution of global lake systems change to anthropogenic forcing}, - author = {Luke Grant and Inne Vanderkelen and Lukas Gudmundsson and Zeli Tan and Marjorie Perroud and Victor M. Stepanenko and Andrey V. Debolskiy and Bram Droppers and Annette B. G. Janssen and R. Iestyn Woolway and Margarita Choulga and Gianpaolo Balsamo and Georgiy Kirillin and Jacob Schewe and Fang Zhao and Iliusi Vega del Valle and Malgorzata Golub and Don Pierson and Rafael Marc{\'{e}} and Sonia I. Seneviratne and Wim Thiery}, - year = 2021, - journal = {Nature Geoscience}, - publisher = {Springer Science and Business Media {LLC}}, - volume = 14, - pages = {849--854}, - url = {https://doi.org/10.1038/s41561-021-00833-x}, - doi = {10.1038/s41561-021-00833-x}, - number = 11 -} - -@article{clasen1980oecd, - title={OECD Eutrophication programme. Shallow lakes and reservoirs project. Final report}, - author={Clasen, J and Bernhardt, H}, - journal={Water Research Centre. Marlow UK}, - year={1980} -} -@Article{xi2022tradeoff, - title = {Trade-off between tree planting and wetland conservation in {China}}, - author = {Yi Xi and Shushi Peng and Gang Liu and Agn{\`{e}}s Ducharne and Philippe Ciais and Catherine Prigent and Xinyu Li and Xutao Tang}, - year = 2022, - journal = {Nature Communications}, - publisher = {Springer Science and Business Media {LLC}}, - volume = 13, - url = {https://doi.org/10.1038/s41467-022-29616-7}, - doi = {10.1038/s41467-022-29616-7}, - number = 1} - -@Article{dueholm2022midas, - title = {{MiDAS} 4: A global catalogue of full-length 16S {rRNA} gene sequences and taxonomy for studies of bacterial communities in wastewater treatment plants}, - author = {Morten Kam Dahl Dueholm and Marta Nierychlo and Kasper Skytte Andersen and Vibeke Rudkjøbing and Simon Knutsson and Sonia Arriaga and Rune Bakke and Nico Boon and Faizal Bux and Magnus Christensson and Adeline Seak May Chua and Thomas P. Curtis and Eddie Cytryn and Leonardo Erijman and Claudia Etchebehere and Despo Fatta-Kassinos and Dominic Frigon and Maria Carolina Garcia-Chaves and April Z. Gu and Harald Horn and David Jenkins and Norbert Kreuzinger and Sheena Kumari and Ana Lanham and Yingyu Law and TorOve Leiknes and Eberhard Morgenroth and Adam Muszyński and Steve Petrovski and Maite Pijuan and Suraj Babu Pillai and Maria A. M. Reis and Qi Rong and Simona Rossetti and Robert Seviour and Nick Tooker and Pirjo Vainio and Mark van Loosdrecht and R. Vikraman and Jiří Wanner and David Weissbrodt and Xianghua Wen and Tong Zhang and Per H. Nielsen and Mads Albertsen and Per Halkj{\ae}r Nielsen and}, - year = 2022, - journal = {Nature Communications}, - publisher = {Springer Science and Business Media {LLC}}, - volume = 13, - url = {https://doi.org/10.1038/s41467-022-29438-7}, - doi = {10.1038/s41467-022-29438-7}, - number = 1} - -@Article{zhao2022new, - title = {New insights into eutrophication management: Importance of temperature and water residence time}, - author = {Feng Zhao and Xu Zhan and Hai Xu and Guangwei Zhu and Wei Zou and Mengyuan Zhu and Lijuan Kang and Yulong Guo and Xingchen Zhao and Zicong Wang and Wei Tang}, - year = 2022, - journal = {Journal of Environmental Sciences}, - publisher = {Elsevier {BV}}, - volume = 111, - pages = {229--239}, - url = {https://doi.org/10.1016/j.jes.2021.02.033}, - doi = {10.1016/j.jes.2021.02.033} -} - -@Article{song2022modelling, - title = {Modelling the thresholds of nitrogen/phosphorus concentration and hydraulic retention time for bloom control in reclaimed water landscape}, - author = {Keying Song and Shufeng Zhu and Yun Lu and Guohua Dao and Yinhu Wu and Zhuo Chen and Shengnan Wang and Junhan Liu and Wenguang Zhou and Hong-Ying Hu}, - year = 2022, - journal = {Frontiers of Environmental Science {\&} Engineering}, - publisher = {Springer Science and Business Media {LLC}}, - volume = 16, - url = {https://doi.org/10.1007/s11783-022-1564-1}, - doi = {10.1007/s11783-022-1564-1}, - number = 10} - -@Article{visser2015artificial, - title = {Artificial mixing to control cyanobacterial blooms: a review}, - author = {Petra M. Visser and Bas W. Ibelings and Myriam Bormans and Jef Huisman}, - year = 2015, - journal = {Aquatic Ecology}, - publisher = {Springer Science and Business Media {LLC}}, - volume = 50, - pages = {423--441}, - url = {https://doi.org/10.1007/s10452-015-9537-0}, - doi = {10.1007/s10452-015-9537-0}, - number = 3} - -@Article{cha2017the, - title = {The relative importance of water temperature and residence time in predicting cyanobacteria abundance in regulated rivers}, - author = {YoonKyung Cha and Kyung Hwa Cho and Hyuk Lee and Taegu Kang and Joon Ha Kim}, - year = 2017, - journal = {Water Research}, - publisher = {Elsevier {BV}}, - volume = 124, - pages = {11--19}, - url = {https://doi.org/10.1016/j.watres.2017.07.040}, - doi = {10.1016/j.watres.2017.07.040} -} - -@Article{li2022different, - title = {Different drinking water production schemes to treat authentic algae-laden source water: Removal of 2-methylisoborneol in different forms}, - author = {Huixian Li and Lei Li and Qi Yin and Shuili Yu and Naiyun Gao and Xianyun Wang and Juxiang Chen}, - year = 2022, - journal = {Chemical Engineering Journal}, - publisher = {Elsevier {BV}}, - volume = 440, - pages = 135962, - url = {https://doi.org/10.1016/j.cej.2022.135962}, - doi = {10.1016/j.cej.2022.135962} -} - -@Article{peng2021the, - title = {The changing characteristics of phytoplankton community and biomass in subtropical shallow lakes: Coupling effects of land use patterns and lake morphology}, - author = {Xue Peng and Lu Zhang and Yuan Li and Qingwei Lin and Chao He and Suzhen Huang and Hua Li and Xinyi Zhang and Biyun Liu and Fangjie Ge and Qiaohong Zhou and Yi Zhang and Zhenbin Wu}, - year = 2021, - journal = {Water Research}, - publisher = {Elsevier {BV}}, - volume = 200, - pages = 117235, - url = {https://doi.org/10.1016/j.watres.2021.117235}, - doi = {10.1016/j.watres.2021.117235} -} - -@Article{gu2021effects, - title = {Effects of different fluid fields on the formation of cyanobacterial blooms}, - author = {Peng Gu and Guoping Zhang and Xin Luo and Lianghao Xu and Weizhen Zhang and Qi Li and Yuyang Sun and Zheng Zheng}, - year = 2021, - journal = {Chemosphere}, - publisher = {Elsevier {BV}}, - volume = 283, - pages = 131219, - url = {https://doi.org/10.1016/j.chemosphere.2021.131219}, - doi = {10.1016/j.chemosphere.2021.131219} -} - -@Article{chen2020comparative, - title = {Comparative genomics reveals insights into cyanobacterial evolution and habitat adaptation}, - author = {Meng-Yun Chen and Wen-Kai Teng and Liang Zhao and Chun-Xiang Hu and Yang-Kai Zhou and Bo-Ping Han and Li-Rong Song and Wen-Sheng Shu}, - year = 2020, - journal = {The {ISME} Journal}, - publisher = {Springer Science and Business Media {LLC}}, - volume = 15, - pages = {211--227}, - url = {https://doi.org/10.1038/s41396-020-00775-z}, - doi = {10.1038/s41396-020-00775-z}, - number = 1} - -@Article{jeong2021methylisoborneol, - title = {2-Methylisoborneol (2-{MIB}) Excretion by {{\textit{Pseudanabaena yagii}}} under Low Temperature}, - author = {Ju-Yong Jeong and Sang-Hoon Lee and Mi-Ra Yun and Seung-Eun Oh and Kyong-Hee Lee and Hee-Deung Park}, - year = 2021, - journal = {Microorganisms}, - publisher = {{MDPI} {AG}}, - volume = 9, - pages = 2486, - url = {https://doi.org/10.3390/microorganisms9122486}, - doi = {10.3390/microorganisms9122486}, - number = 12} - -@Article{hu2006sediment, - title = {Sediment resuspension in the {Lake Taihu}, {China}}, - author = {Chunhua Hu and Weiping Hu and Fabing Zhang and Zhixin Hu and Xianghua Li and Yonggen Chen}, - year = 2006, - journal = {Chinese Science Bulletin}, - publisher = {Springer Science and Business Media {LLC}}, - volume = 51, - pages = {731--737}, - url = {https://doi.org/10.1007/s11434-006-0731-2}, - doi = {10.1007/s11434-006-0731-2}, - number = 6 -} - -@Article{lafabrie2013impact, - title = {Impact of contaminated-sediment resuspension on phytoplankton in the Biguglia lagoon (Corsica, Mediterranean Sea)}, - author = {C{\'{e}}line Lafabrie and Marie Garrido and Christophe Leboulanger and Philippe Cecchi and G{\'{e}}rald Gr{\'{e}}gori and Vanina Pasqualini and Olivier Pringault}, - year = 2013, - journal = {Estuarine, Coastal and Shelf Science}, - publisher = {Elsevier {BV}}, - volume = 130, - pages = {70--80}, - url = {https://doi.org/10.1016/j.ecss.2013.06.025}, - doi = {10.1016/j.ecss.2013.06.025} -} - -@Article{gerloff1954cell, - title = {Cell Contents of Nitrogen and Phosphorous as a Measure of Their Availability for Growth of {{\textit{Microcystis aeruginosa}}}}, - author = {Gerald C. Gerloff and Folke Skoog}, - year = 1954, - journal = {Ecology}, - publisher = {Wiley}, - volume = 35, - pages = 348, - url = {https://doi.org/10.2307/1930097}, - doi = {10.2307/1930097}, - number = 3} - -@Article{jacobson1982polyphosphate, - title = {Polyphosphate metabolism in the blue-green alga {{\textit{Microcystis aeruginosa}}}}, - author = {L. Jacobson and M. Halmann}, - year = 1982, - journal = {Journal of Plankton Research}, - publisher = {Oxford University Press ({OUP})}, - volume = 4, - pages = {481--488}, - url = {https://doi.org/10.1093/plankt/4.3.481}, - doi = {10.1093/plankt/4.3.481}, - number = 3} - -@Article{foo2020effects, - title = {Effects of H2O2 on growth, metabolic activity and membrane integrity in three strains of {{\textit{Microcystis aeruginosa}}}}, - author = {Su Chern Foo and Ian J. Chapman and David M. Hartnell and Andrew D. Turner and Daniel J. Franklin}, - year = 2020, - journal = {Environmental Science and Pollution Research}, - publisher = {Springer Science and Business Media {LLC}}, - volume = 27, - pages = {38916--38927}, - url = {https://doi.org/10.1007/s11356-020-09729-6}, - doi = {10.1007/s11356-020-09729-6}, - number = 31} - -@Article{ma2022establishment, - title = {Establishment of high-cell-density heterotrophic cultivation of Poterioochromonas malhamensis contributes to achieving biological control of {{\textit{Microcystis}}}}, - author = {Mingyang Ma and Fuchen Wang and Chaojun Wei and Jianping Chen and Hu Jin and Hongxia Wang and Lirong Song and Qiang Hu and Yingchun Gong}, - year = 2022, - journal = {Journal of Applied Phycology}, - publisher = {Springer Science and Business Media {LLC}}, - volume = 34, - pages = {423--434}, - url = {https://doi.org/10.1007/s10811-021-02659-x}, - doi = {10.1007/s10811-021-02659-x}, - number = 1} - -@Article{wei2019arga, - title = {{ARGA}, a pipeline for primer evaluation on antibiotic resistance genes}, - author = {Ziyan Wei and Yueni Wu and Kai Feng and Min Yang and Yu Zhang and Qichao Tu and Jun Wang and Ye Deng}, - year = 2019, - journal = {Environment International}, - publisher = {Elsevier {BV}}, - volume = 128, - pages = {137--145}, - url = {https://doi.org/10.1016/j.envint.2019.04.030}, - doi = {10.1016/j.envint.2019.04.030} -} - -@Article{wei2021highthroughput, - title = {High-Throughput Single-Cell Technology Reveals the Contribution of Horizontal Gene Transfer to Typical Antibiotic Resistance Gene Dissemination in Wastewater Treatment Plants}, - author = {Ziyan Wei and Kai Feng and Zhujun Wang and Yu Zhang and Min Yang and Yong-Guan Zhu and Marko P. J. Virta and Ye Deng}, - year = 2021, - journal = {Environmental Science {\&} Technology}, - publisher = {American Chemical Society ({ACS})}, - volume = 55, - pages = {11824--11834}, - url = {https://doi.org/10.1021/acs.est.1c01250}, - doi = {10.1021/acs.est.1c01250}, - number = 17} - -@Article{albouy2001the, - title = {The Gas Vesicle Gene (gvp) Cluster of the Cyanobacterium {{\textit{Pseudanabaena}}} sp. Strain {PCC} 6901}, - author = {Delphine Albouy and Anne-Marie Castets and Nicole Tandeau De Marsac}, - year = 2001, - journal = {{DNA} Sequence}, - publisher = {Informa {UK} Limited}, - volume = 12, - pages = {337--344}, - url = {https://doi.org/10.3109/10425170109084457}, - doi = {10.3109/10425170109084457}, - number = {5-6} -} - -@Article{walsby1995the, - title = {The gas vesicles, buoyancy and vertical distribution of cyanobacteria in the {Baltic Sea}}, - author = {Anthony E. Walsby and Paul K. Hayes and Rolf Boje}, - year = 1995, - journal = {European Journal of Phycology}, - publisher = {Informa {UK} Limited}, - volume = 30, - pages = {87--94}, - url = {https://doi.org/10.1080/09670269500650851}, - doi = {10.1080/09670269500650851}, - number = 2} - -@Article{bright1999the, - title = {The relationship between critical pressure and width of gas vesicles in isolates of {{\textit{Planktothrix rubescens}}} from {Lake Zürich}}, - author = {D. I. Bright and A. E. Walsby}, - year = 1999, - journal = {Microbiology}, - publisher = {Microbiology Society}, - volume = 145, - pages = {2769--2775}, - url = {https://doi.org/10.1099/00221287-145-10-2769}, - doi = {10.1099/00221287-145-10-2769}, - number = 10} - -@Article{porat1999turbidity, - title = {Turbidity changes caused by collapse of cyanobacterial gas vesicles in water pumped from {Lake Kinneret} into the {Israeli} national water carrier}, - author = {R Porat and B Teltsch and R.A Mosse and Z Dubinsky and A.E Walsby}, - year = 1999, - journal = {Water Research}, - publisher = {Elsevier {BV}}, - volume = 33, - pages = {1634--1644}, - url = {https://doi.org/10.1016/s0043-1354%2898%2900393-5}, - doi = {10.1016/s0043-1354(98)00393-5}, - number = 7} - -@Article{mesquita2019direct, - title = {Direct Effects of Temperature on Growth of Different Tropical Phytoplankton Species}, - author = {Marcella C.B. Mesquita and Ana Carolina C. Prestes and Andreia M.A. Gomes and Marcelo M. Marinho}, - year = 2019, - journal = {Microbial Ecology}, - publisher = {Springer Science and Business Media {LLC}}, - volume = 79, - pages = {1--11}, - url = {https://doi.org/10.1007/s00248-019-01384-w}, - doi = {10.1007/s00248-019-01384-w}, - number = 1} - -@Article{konopka1978effect, - title = {Effect of Temperature on Blue-Green Algae (Cyanobacteria) in {Lake Mendota}}, - author = {Allan Konopka and Thomas D. Brock}, - year = 1978, - journal = {Applied and Environmental Microbiology}, - publisher = {American Society for Microbiology}, - volume = 36, - pages = {572--576}, - url = {https://doi.org/10.1128/aem.36.4.572-576.1978}, - doi = {10.1128/aem.36.4.572-576.1978}, - number = 4} - -@Article{xian2022higher, - title = {Higher sensitivity to Cu2$\mathplus$ exposure of {{\textit{Microcystis aeruginosa}}} in late lag phase is beneficial to its control}, - author = {Xuanxuan Xian and Xi Li and Chengsong Ye and Kun Wan and Mingbao Feng and Chen Luo and Xin Yu}, - year = 2022, - journal = {Water Research}, - publisher = {Elsevier {BV}}, - volume = 214, - pages = 118207, - url = {https://doi.org/10.1016/j.watres.2022.118207}, - doi = {10.1016/j.watres.2022.118207} -} - -@Article{paerl2001harmful, - title = {Harmful Freshwater Algal Blooms, With an Emphasis on Cyanobacteria}, - author = {Hans W. Paerl and Rolland S. Fulton and Pia H. Moisander and Julianne Dyble}, - year = 2001, - journal = {The Scientific World Journal}, - publisher = {Hindawi Limited}, - volume = 1, - pages = {76--113}, - url = {https://doi.org/10.1100/tsw.2001.16}, - doi = {10.1100/tsw.2001.16} -} - -@Article{li2022temperaturedependent, - title = {Temperature-dependent growth characteristics and dominance trends of the cyanobacterium {{\textit{Microcystis}}} sp. and the diatom {{\textit{Cyclotella meneghiniana}}}}, - author = {Jingnan Li and Yoshimasa Amano and Motoi Machida}, - year = 2022, - journal = {Hydrobiologia}, - publisher = {Springer Science and Business Media {LLC}}, - volume = 849, - pages = {1677--1688}, - url = {https://doi.org/10.1007/s10750-022-04810-2}, - doi = {10.1007/s10750-022-04810-2}, - number = 7} - -@Article{mowe2015rising, - title = {Rising temperatures may increase growth rates and microcystin production in tropical {{\textit{Microcystis}}} species}, - author = {Maxine A.D. Mowe and Cristina Porojan and Feras Abbas and Simon M. Mitrovic and Richard P. Lim and Ambrose Furey and Darren C.J. Yeo}, - year = 2015, - journal = {Harmful Algae}, - publisher = {Elsevier {BV}}, - volume = 50, - pages = {88--98}, - url = {https://doi.org/10.1016/j.hal.2015.10.011}, - doi = {10.1016/j.hal.2015.10.011} -} - -@Article{you2017temperature, - title = {Temperature effects on growth and buoyancy of {{\textit{Microcystis aeruginosa}}}}, - author = {Jiaqi You and Kevin Mallery and Jiarong Hong and Miki Hondzo}, - year = 2017, - journal = {Journal of Plankton Research}, - publisher = {Oxford University Press ({OUP})}, - volume = 40, - pages = {16--28}, - url = {https://doi.org/10.1093/plankt/fbx059}, - doi = {10.1093/plankt/fbx059}, - number = 1} - -@Article{bright2000the, - title = {The daily integral of growth by {{\textit{Planktothrix rubescens}}} calculated from growth rate in culture and irradiance in {Lake Zürich}}, - author = {Dylan I. Bright and Anthony E. Walsby}, - year = 2000, - journal = {New Phytologist}, - publisher = {Wiley}, - volume = 146, - pages = {301--316}, - url = {https://doi.org/10.1046/j.1469-8137.2000.00640.x}, - doi = {10.1046/j.1469-8137.2000.00640.x}, - number = 2} - -@Article{zotina2003photoheterotrophy, - title = {Photoheterotrophy and light-dependent uptake of organic and organic nitrogenous compounds by {{\textit{Planktothrix rubescens}}} under low irradiance}, - author = {Tatiana Zotina and Oliver Köster and Friedrich Jüttner}, - year = 2003, - journal = {Freshwater Biology}, - publisher = {Wiley}, - volume = 48, - pages = {1859--1872}, - url = {https://doi.org/10.1046/j.1365-2427.2003.01134.x}, - doi = {10.1046/j.1365-2427.2003.01134.x}, - number = 10} - -@Article{tonk2005the, - title = {The Microcystin Composition of the Cyanobacterium {{\textit{Planktothrix agardhii}}} Changes toward a More Toxic Variant with Increasing Light Intensity}, - author = {Linda Tonk and Petra M. Visser and Guntram Christiansen and Elke Dittmann and Eveline O. F. M. Snelder and Claudia Wiedner and Luuc R. Mur and Jef Huisman}, - year = 2005, - journal = {Applied and Environmental Microbiology}, - publisher = {American Society for Microbiology}, - volume = 71, - pages = {5177--5181}, - url = {https://doi.org/10.1128/aem.71.9.5177-5181.2005}, - doi = {10.1128/aem.71.9.5177-5181.2005}, - number = 9} - -@Article{oneill2008using, - title = {Using expert knowledge to assess uncertainties in future polar bear populations under climate change}, - author = {Saffron J. O'Neill and Tim J. Osborn and Mike Hulme and Irene Lorenzoni and Andrew R. Watkinson}, - year = 2008, - journal = {Journal of Applied Ecology}, - publisher = {Wiley}, - volume = 45, - pages = {1649--1659}, - url = {https://doi.org/10.1111/j.1365-2664.2008.01552.x}, - doi = {10.1111/j.1365-2664.2008.01552.x}, - number = 6} - -@Article{silvabenavides2011nitrogen, - title = {Nitrogen and phosphorus removal through laboratory batch cultures of microalga Chlorella vulgaris and cyanobacterium {{\textit{Planktothrix isothrix}}} grown as monoalgal and as co-cultures}, - author = {Ana Margarita Silva-Benavides and Giuseppe Torzillo}, - year = 2011, - journal = {Journal of Applied Phycology}, - publisher = {Springer Science and Business Media {LLC}}, - volume = 24, - pages = {267--276}, - url = {https://doi.org/10.1007/s10811-011-9675-2}, - doi = {10.1007/s10811-011-9675-2}, - number = 2} - -@Article{davis2015effects, - title = {Effects of Increasing Nitrogen and Phosphorus Concentrations on Phytoplankton Community Growth and Toxicity During {{\textit{Planktothrix}}} Blooms in Sandusky Bay, Lake Erie}, - author = {Timothy W. Davis and George S. Bullerjahn and Taylor Tuttle and Robert Michael McKay and Susan B. Watson}, - year = 2015, - journal = {Environmental Science {\&} Technology}, - publisher = {American Chemical Society ({ACS})}, - volume = 49, - pages = {7197--7207}, - url = {https://doi.org/10.1021/acs.est.5b00799}, - doi = {10.1021/acs.est.5b00799}, - number = 12} - -@Article{rohrlack2007effects, - title = {Effects of nutrient and light availability on production of bioactive anabaenopeptins and microviridin by the cyanobacterium {{\textit{Planktothrix agardhii}}}}, - author = {Thomas Rohrlack and Hans Utkilen}, - year = 2007, - journal = {Hydrobiologia}, - publisher = {Springer Science and Business Media {LLC}}, - volume = 583, - pages = {231--240}, - url = {https://doi.org/10.1007/s10750-006-0536-y}, - doi = {10.1007/s10750-006-0536-y}, - number = 1} - -@Article{deng2020ecochemical, - title = {Eco-chemical mechanisms govern phytoplankton emissions of dimethylsulfide in global surface waters}, - author = {Xuwei Deng and Jun Chen and Lars-Anders Hansson and Xia Zhao and Ping Xie}, - year = 2020, - journal = {National Science Review}, - publisher = {Oxford University Press ({OUP})}, - volume = 8, - url = {https://doi.org/10.1093/nsr/nwaa140}, - doi = {10.1093/nsr/nwaa140}, - number = 2} - -@Article{walsby2002lightdependent, - title = {Light-dependent growth rate determines changes in the population of {{\textit{Planktothrix rubescens}}} over the annual cycle in {Lake Zürich}, {Switzerland}}, - author = {A. E. Walsby and F. Schanz}, - year = 2002, - journal = {New Phytologist}, - publisher = {Wiley}, - volume = 154, - pages = {671--687}, - url = {https://doi.org/10.1046/j.1469-8137.2002.00401.x}, - doi = {10.1046/j.1469-8137.2002.00401.x}, - number = 3} - -@Article{ahern2008in, - title = {In situ field experiment shows Lyngbya majuscula (cyanobacterium) growth stimulated by added iron, phosphorus and nitrogen}, - author = {Kathleen S. Ahern and Colin R. Ahern and James W. Udy}, - year = 2008, - journal = {Harmful Algae}, - publisher = {Elsevier {BV}}, - volume = 7, - pages = {389--404}, - url = {https://doi.org/10.1016/j.hal.2007.08.006}, - doi = {10.1016/j.hal.2007.08.006}, - number = 4} - -@Article{araujotorres2015assessment, - title = {Assessment of the Effects of Light Availability on Growth and Competition Between Strains of {{\textit{Planktothrix agardhii}}} and {{\textit{Microcystis aeruginosa}}}}, - author = {Camila de Araujo Torres and Miquel Lürling and Marcelo Manzi Marinho}, - year = 2015, - journal = {Microbial Ecology}, - publisher = {Springer Science and Business Media {LLC}}, - volume = 71, - pages = {802--813}, - url = {https://doi.org/10.1007/s00248-015-0719-z}, - doi = {10.1007/s00248-015-0719-z}, - number = 4} - -@Article{elmetri2004effects, - title = {Effects of phosphorus on the growth and nitrogen fixation rates of {{\textit{Lyngbya majuscula}}}: implications for management in {Moreton Bay}, {Queensland}}, - author = {I Elmetri and PRF Bell}, - year = 2004, - journal = {Marine Ecology Progress Series}, - publisher = {Inter-Research Science Center}, - volume = 281, - pages = {27--35}, - url = {https://doi.org/10.3354/meps281027}, - doi = {10.3354/meps281027} -} - -@Article{anunciacaogomes2015temperature, - title = {Temperature Effect on Exploitation and Interference Competition among {{\textit{Microcystis aeruginosa}}}, {{\textit{Planktothrix agardhii}}} and, {{\textit{Cyclotella meneghiniana}}}}, - author = {Andreia Maria da Anuncia{\c{c}}{\~{a}}o Gomes and Sandra Maria Feliciano de Oliveira e Azevedo and Miquel Lürling}, - year = 2015, - journal = {The Scientific World Journal}, - publisher = {Hindawi Limited}, - volume = 2015, - pages = {1--10}, - url = {https://doi.org/10.1155/2015/834197}, - doi = {10.1155/2015/834197} -} - -@Article{heath2016the, - title = {The role of nitrogen and phosphorus in regulating {{\textit{Phormidium}}} sp. (cyanobacteria) growth and anatoxin production}, - author = {Mark Heath and Susie A. Wood and Roger G. Young and Ken G. Ryan}, - year = 2016, - journal = {{FEMS} Microbiology Ecology}, - publisher = {Oxford University Press ({OUP})}, - volume = 92, - pages = {fiw021}, - url = {https://doi.org/10.1093/femsec/fiw021}, - doi = {10.1093/femsec/fiw021}, - number = 3, - editor = {Riks Laanbroek} -} - -@Article{walsby2004comparison, - title = {Comparison of the depth where {{\textit{Planktothrix rubescens}}} stratifies and the depth where the daily insolation supports its neutral buoyancy}, - author = {Anthony E. Walsby and Gabrielle Ng and Catherine Dunn and Phillip A. Davis}, - year = 2004, - journal = {New Phytologist}, - publisher = {Wiley}, - volume = 162, - pages = {133--145}, - url = {https://doi.org/10.1111/j.1469-8137.2004.01020.x}, - doi = {10.1111/j.1469-8137.2004.01020.x}, - number = 1} - -@Article{roma1995growth, - title = {Growth parameters of {{\textit{Pseudanabaena galeata}}} Böcher in culture under different light and temperature conditions}, - author = {Susana Roma}, - year = 1995, - journal = {Algological Studies/Archiv für Hydrobiologie, Supplement Volumes}, - publisher = {Schweizerbart}, - volume = 75, - pages = {239--248}, - url = {https://doi.org/10.1127/algol_stud/75/1995/239}, - doi = {10.1127/algol_stud/75/1995/239} -} - -@Article{yin1997factors, - title = {Factors influencing growth and toxin production by cultures of the freshwater cyanobacterium {{\textit{Lyngbya wollei}}} Farlow ex Gomont}, - author = {Qiqin Yin and Wayne W. Carmichael and William R. Evans }, - year = 1997, - journal = {Journal of Applied Phycology}, - publisher = {Springer}, - volume = 9, - pages = {55--63}, - url = {https://link.springer.com/article/10.1023/A:1007959002191}, - doi = {https://doi.org/10.1023/A:1007959002191} -} - - - -@Article{nagai2007growth, - title = {Growth characteristics and growth modeling of {{\textit{Microcystis aeruginosa}}} and {{\textit{Planktothrix agardhii}}} under iron limitation}, - author = {Takashi Nagai and Akio Imai and Kazuo Matsushige and Takehiko Fukushima}, - year = 2007, - journal = {Limnology}, - publisher = {Springer Science and Business Media {LLC}}, - volume = 8, - pages = {261--270}, - url = {https://doi.org/10.1007/s10201-007-0217-1}, - doi = {10.1007/s10201-007-0217-1}, - number = 3} - -@Article{gibson2000the, - title = {The rise and rise of {{\textit{Planktothrix agardhii}}} in Lough Neagh 1969{\textendash}1997}, - author = {C. E. Gibson and R. H. Foy and S. D. Lennox}, - year = 2000, - journal = {{SIL} Proceedings, 1922-2010}, - publisher = {Informa {UK} Limited}, - volume = 27, - pages = {2913--2916}, - url = {https://doi.org/10.1080/03680770.1998.11898203}, - doi = {10.1080/03680770.1998.11898203}, - number = 5} - -@Article{walsby2005stratification, - title = {Stratification by cyanobacteria in lakes: a dynamic buoyancy model indicates size limitations met by {{\textit{Planktothrix rubescens}}} filaments}, - author = {Anthony E. Walsby}, - year = 2005, - journal = {New Phytologist}, - publisher = {Wiley}, - volume = 168, - pages = {365--376}, - url = {https://doi.org/10.1111/j.1469-8137.2005.01508.x}, - doi = {10.1111/j.1469-8137.2005.01508.x}, - number = 2 -} - -@article{mur1995light, - title = {Light as a selective factor in the distribution of phytoplankton species}, - journal = {Water Science and Technology}, - volume = {32}, - number = {4}, - pages = {25-34}, - year = {1995}, - note = {Selection Mechanisms Controlling Biomass Distribution}, - issn = {0273-1223}, - doi = {10.1016/0273-1223(95)00676-1}, - url = {https://www.sciencedirect.com/science/article/pii/0273122395006761}, - author = {L.R. Mur and H. Schreurs}, - keywords = {Competition, cyanobacteria, light limitation, light climate, lake restoration, phytoplankton} -} - - -@Article{briand2008competition, - title = {Competition between microcystin- and non-microcystin-producing {{\textit{Planktothrix agardhii}}} (cyanobacteria) strains under different environmental conditions}, - author = {Enora Briand and Claude Y{\'{e}}pr{\'{e}}mian and Jean-Fran{\c{c}}ois Humbert and Catherine Quiblier}, - year = 2008, - journal = {Environmental Microbiology}, - publisher = {Wiley}, - volume = 10, - pages = {3337--3348}, - url = {https://doi.org/10.1111/j.1462-2920.2008.01730.x}, - doi = {10.1111/j.1462-2920.2008.01730.x}, - number = 12} - -@Article{foy1976the, - title = {The influence of daylength, light intensity and temperature on the growth rates of planktonic blue-green algae}, - author = {R.H. Foy and C.E. Gibson and R.V. Smith}, - year = 1976, - journal = {British Phycological Journal}, - publisher = {Informa {UK} Limited}, - volume = 11, - pages = {151--163}, - url = {https://doi.org/10.1080/00071617600650181}, - doi = {10.1080/00071617600650181}, - number = 2} - -@Article{wood2017effect, - title = {Effect of river flow, temperature, and water chemistry on proliferations of the benthic anatoxin-producing cyanobacterium {{\textit{Phormidium}}}}, - author = {Susanna A. Wood and Javier Atalah and Annika Wagenhoff and Logan Brown and Kati Doehring and Roger G. Young and Ian Hawes}, - year = 2017, - journal = {Freshwater Science}, - publisher = {University of Chicago Press}, - volume = 36, - pages = {63--76}, - url = {https://doi.org/10.1086/690114}, - doi = {10.1086/690114}, - number = 1} - -@Article{lanciotti2003actinomycetes, - title = {Actinomycetes, cyanobacteria and algae causing tastes and odours in water of the River Arno used for the water supply of {Florence}}, - author = {Eudes Lanciotti and Chiara Santini and Emanuela Lupi and Daniela Burrini}, - year = 2003, - journal = {Journal of Water Supply: Research and Technology-Aqua}, - publisher = {{IWA} Publishing}, - volume = 52, - pages = {489--500}, - url = {https://doi.org/10.2166/aqua.2003.0044}, - doi = {10.2166/aqua.2003.0044}, - number = 7} - -@Article{persson1996cyanobacteria, - title = {Cyanobacteria and off-flavours}, - author = {Per-Edvin Persson}, - year = 1996, - journal = {Phycologia}, - publisher = {Informa {UK} Limited}, - volume = 35, - pages = {168--171}, - url = {https://doi.org/10.2216/i0031-8884-35-6s-168.1}, - doi = {10.2216/i0031-8884-35-6s-168.1}, - number = {sup6} -} - -@Article{oh2017effects, - title = {Effects of Environmental Factors on Cyanobacterial Production of Odorous Compounds: Geosmin and 2-Methylisoborneol}, - author = {Hyung-Seok Oh and Chang Soo Lee and Ankita Srivastava and Hee-Mock Oh and Chi-Yong Ahn}, - year = 2017, - journal = {Journal of Microbiology and Biotechnology}, - publisher = {Journal of Microbiology and Biotechnology}, - volume = 27, - pages = {1316--1323}, - url = {https://doi.org/10.4014/jmb.1702.02069}, - doi = {10.4014/jmb.1702.02069}, - number = 7} - -@Article{lu2019a, - title = {A molecular-based method to estimate the risk associated with cyanotoxins and odor compounds in drinking water sources}, - author = {Keng-Yu Lu and Yi-Ting Chiu and Michael Burch and Delia Senoro and Tsair-Fuh Lin}, - year = 2019, - journal = {Water Research}, - publisher = {Elsevier {BV}}, - volume = 164, - pages = 114938, - url = {https://doi.org/10.1016/j.watres.2019.114938}, - doi = {10.1016/j.watres.2019.114938} -} - -@Article{lu2020use, - title = {Use of {qPCR} and {RT}-{qPCR} for monitoring variations of microcystin producers and as an early warning system to predict toxin production in an {Ohio} inland lake}, - author = {Jingrang Lu and Ian Struewing and Larry Wymer and Daniel R. Tettenhorst and Jody Shoemaker and Joel Allen}, - year = 2020, - journal = {Water Research}, - publisher = {Elsevier {BV}}, - volume = 170, - pages = 115262, - url = {https://doi.org/10.1016/j.watres.2019.115262}, - doi = {10.1016/j.watres.2019.115262} -} - -@Article{rong2018source, - title = {Source water odor in one reservoir in hot and humid areas of southern {China}: occurrence, diagnosis and possible mitigation measures}, - author = {Chao Rong and Dongpo Liu and Yan Li and Kai Yang and Xiaobo Han and Jianwei Yu and Bolun Pan and Jinsong Zhang and Min Yang}, - year = 2018, - journal = {Environmental Sciences Europe}, - publisher = {Springer Science and Business Media {LLC}}, - volume = 30, - url = {https://doi.org/10.1186/s12302-018-0175-8}, - doi = {10.1186/s12302-018-0175-8}, - number = 1 -} - - -@article{edgar2013uparse, - author = {Edgar, Robert C.}, - title = {{UPARSE}: highly accurate {OTU} sequences from microbial amplicon reads}, - journal = {Nature Methods}, - volume = {10}, - number = {10}, - pages = {996-998}, - ISSN = {1548-7105}, - DOI = {10.1038/nmeth.2604}, - url = {https://doi.org/10.1038/nmeth.2604}, - year = {2013} -} - -@Article{magoc2011flash, - title = {{FLASH}: fast length adjustment of short reads to improve genome assemblies}, - author = {T. Magoc and S. L. Salzberg}, - year = 2011, - journal = {Bioinformatics}, - publisher = {Oxford University Press ({OUP})}, - volume = 27, - pages = {2957--2963}, - url = {https://doi.org/10.1093/bioinformatics/btr507}, - doi = {10.1093/bioinformatics/btr507}, - number = 21} - -@Misc{anderson2017permutational, - title = {Permutational Multivariate Analysis of Variance ({PERMANOVA})}, - author = {Marti J. Anderson}, - year = 2017, - publisher = {Wiley}, - pages = {1--15}, - url = {https://doi.org/10.1002/9781118445112.stat07841}, - doi = {10.1002/9781118445112.stat07841} -} - -@Article{kschowak2018heterologous, - title = {Heterologous expression of 2-methylisoborneol / 2 methylenebornane biosynthesis genes in Escherichia coli yields novel C11-terpenes}, - author = {Max J. Kschowak and Hannah Wortmann and Jeroen S. Dickschat and Jens Schrader and Markus Buchhaupt}, - year = 2018, - journal = {{PLOS} {ONE}}, - publisher = {Public Library of Science ({PLoS})}, - volume = 13, - pages = {e0196082}, - url = {https://doi.org/10.1371/journal.pone.0196082}, - doi = {10.1371/journal.pone.0196082}, - number = 4, - editor = {Björn Hamberger} -} - -@Article{dixon2003vegan, - title = {{VEGAN}, a package of R functions for community ecology}, - author = {Philip Dixon}, - year = 2003, - journal = {Journal of Vegetation Science}, - publisher = {Wiley}, - volume = 14, - pages = {927--930}, - url = {https://doi.org/10.1111/j.1654-1103.2003.tb02228.x}, - doi = {10.1111/j.1654-1103.2003.tb02228.x}, - number = 6} - -@Article{kruskal1964nonmetric, - title = {Nonmetric multidimensional scaling: A numerical method}, - author = {J. B. Kruskal}, - year = 1964, - journal = {Psychometrika}, - publisher = {Springer Science and Business Media {LLC}}, - volume = 29, - pages = {115--129}, - url = {https://doi.org/10.1007/bf02289694}, - doi = {10.1007/bf02289694}, - number = 2} - -@Article{mao2022joint, - title = {Joint majorization of waterworks and secondary chlorination points considering the chloric odor and economic investment in the {DWDS} using machine learning and optimization algorithms}, - author = {Ruyin Mao and Kejia Zhang and Qingzhou Zhang and Jia Xu and Cheng Cen and Renjie Pan and Tuqiao Zhang}, - year = 2022, - journal = {Water Research}, - publisher = {Elsevier {BV}}, - pages = 118595, - url = {https://doi.org/10.1016/j.watres.2022.118595}, - doi = {10.1016/j.watres.2022.118595} -} - -@Article{banaresespana2012photoacclimation, - title = {Photoacclimation of cultured strains of the cyanobacteriumr {{\textit{Microcystis aeruginosa}}} to high-light and low-light conditions}, - author = {Elena Ba{\~{n}}ares-Espa{\~{n}}a and Jacco C. Kromkamp and Victoria L{\'{o}}pez-Rodas and Eduardo Costas and Antonio Flores-Moya}, - year = 2012, - journal = {{FEMS} Microbiology Ecology}, - publisher = {Oxford University Press ({OUP})}, - volume = 83, - pages = {700--710}, - url = {https://doi.org/10.1111/1574-6941.12025}, - doi = {10.1111/1574-6941.12025}, - number = 3} - -@Article{briand2012evidence, - title = {Evidence of the Cost of the Production of Microcystins by Microcystis aeruginosa under Differing Light and Nitrate Environmental Conditions}, - author = {Enora Briand and Myriam Bormans and Catherine Quiblier and Marie-Jos{\'{e}} Salen{\c{c}}on and Jean-Fran{\c{c}}ois Humbert}, - year = 2012, - journal = {{PLoS} {ONE}}, - publisher = {Public Library of Science ({PLoS})}, - volume = 7, - pages = {e29981}, - url = {https://doi.org/10.1371/journal.pone.0029981}, - doi = {10.1371/journal.pone.0029981}, - number = 1, - editor = {Brett Neilan} -} - -@Article{lUrling2012comparison, - title = {Comparison of cyanobacterial and green algal growth rates at different temperatures}, - author = {MIQUEL LÜRLING and FASSIL ESHETU and ELISABETH J. FAASSEN and SARIAN KOSTEN and VERA L. M. HUSZAR}, - year = 2012, - journal = {Freshwater Biology}, - publisher = {Wiley}, - volume = 58, - pages = {552--559}, - url = {https://doi.org/10.1111/j.1365-2427.2012.02866.x}, - doi = {10.1111/j.1365-2427.2012.02866.x}, - number = 3} - -@Article{mello2012growth, - title = {Growth inhibition and colony formation in the cyanobacterium Microcystis aeruginosa induced by the cyanobacterium Cylindrospermopsis raciborskii}, - author = {M. M. e. Mello and M. C. S. Soares and F. Roland and M. Lurling}, - year = 2012, - journal = {Journal of Plankton Research}, - publisher = {Oxford University Press ({OUP})}, - volume = 34, - pages = {987--994}, - url = {https://doi.org/10.1093/plankt/fbs056}, - doi = {10.1093/plankt/fbs056}, - number = 11} - -@Article{mowe2015roles, - title = {Roles of nitrogen and phosphorus in growth responses and toxin production (using {LC}-{MS}/{MS}) of tropical Microcystis ichthyoblabe and M. flos-aquae}, - author = {Maxine A. D. Mowe and Feras Abbas and Cristina Porojan and Simon M. Mitrovic and Richard P. Lim and Ambrose Furey and Darren C. J. Yeo}, - year = 2015, - journal = {Journal of Applied Phycology}, - publisher = {Springer Science and Business Media {LLC}}, - volume = 28, - pages = {1543--1552}, - url = {https://doi.org/10.1007/s10811-015-0688-0}, - doi = {10.1007/s10811-015-0688-0}, - number = 3} - -@Article{salvador2016evaluating, - title = {Evaluating the influence of light intensity in {mcyA} gene expression and microcystin production in toxic strains of {{\textit{Planktothrix agardhii}}} and {{\textit{Microcystis aeruginosa}}}}, - author = {Daniel Salvador and Catarina Churro and Elisabete Val{\'{e}}rio}, - year = 2016, - journal = {Journal of Microbiological Methods}, - publisher = {Elsevier {BV}}, - volume = 123, - pages = {4--12}, - url = {https://doi.org/10.1016/j.mimet.2016.02.002}, - doi = {10.1016/j.mimet.2016.02.002} -} - -@Article{shen2007comparative, - title = {Comparative studies on physiological responses to phosphorus in two phenotypes of bloom-forming Microcystis}, - author = {Hong Shen and Lirong Song}, - year = 2007, - journal = {Hydrobiologia}, - publisher = {Springer Science and Business Media {LLC}}, - volume = 592, - pages = {475--486}, - url = {https://doi.org/10.1007/s10750-007-0794-3}, - doi = {10.1007/s10750-007-0794-3}, - number = 1} - -@Article{sugimoto2015roles, - title = {Roles of dilution rate and nitrogen concentration in competition between the cyanobacterium Microcystis aeruginosa and the diatom Cyclotella sp. in eutrophic lakes}, - author = {Koichi Sugimoto and Yusuke Negishi and Yoshimasa Amano and Motoi Machida and Fumio Imazeki}, - year = 2015, - journal = {Journal of Applied Phycology}, - publisher = {Springer Science and Business Media {LLC}}, - volume = 28, - pages = {2255--2263}, - url = {https://doi.org/10.1007/s10811-015-0754-7}, - doi = {10.1007/s10811-015-0754-7}, - number = 4} - -@Article{xiao2017differences, - title = {Differences in cyanobacterial strain responses to light and temperature reflect species plasticity}, - author = {Man Xiao and Anusuya Willis and Michele A. Burford}, - year = 2017, - journal = {Harmful Algae}, - publisher = {Elsevier {BV}}, - volume = 62, - pages = {84--93}, - url = {https://doi.org/10.1016/j.hal.2016.12.008}, - doi = {10.1016/j.hal.2016.12.008} -} - -@Article{lee2012examination, - title = {Examination of Critical Factors Related to Summer Chlorophyll {{\textit{a}}} Concentration in the Sueo Dam Reservoir, Republic of Korea}, - author = {Seungjae Lee and Sangeun Lee and Sung Hoon Kim and Heekyung Park and Sangjun Park and Kyungtaek Yum}, - year = 2012, - journal = {Environmental Engineering Science}, - publisher = {Mary Ann Liebert Inc}, - volume = 29, - pages = {502--510}, - url = {https://doi.org/10.1089/ees.2011.0070}, - doi = {10.1089/ees.2011.0070}, - number = 6} - -@Article{rangel2012phytoplankton, - title = {Phytoplankton biomass is mainly controlled by hydrology and phosphorus concentrations in tropical hydroelectric reservoirs}, - author = {Luciana M. Rangel and L{\'{u}}cia H. S. Silva and Priscila Rosa and F{\'{a}}bio Roland and Vera L. M. Huszar}, - year = 2012, - journal = {Hydrobiologia}, - publisher = {Springer Science and Business Media {LLC}}, - volume = 693, - pages = {13--28}, - url = {https://doi.org/10.1007/s10750-012-1083-3}, - doi = {10.1007/s10750-012-1083-3}, - number = 1} - -@Article{fan2020phylogenetic, - title = {Phylogenetic analyses with systematic taxon sampling show that mitochondria branch within Alphaproteobacteria}, - author = {Lu Fan and Dingfeng Wu and Vadim Goremykin and Jing Xiao and Yanbing Xu and Sriram Garg and Chuanlun Zhang and William F. Martin and Ruixin Zhu}, - year = 2020, - journal = {Nature Ecology {\&} Evolution}, - publisher = {Springer Science and Business Media {LLC}}, - volume = 4, - pages = {1213--1219}, - url = {https://doi.org/10.1038/s41559-020-1239-x}, - doi = {10.1038/s41559-020-1239-x}, - number = 9} - -@Article{liu2021light, - title = {Light stimulates anoxic and oligotrophic growth of glacial Flavobacterium strains that produce zeaxanthin}, - author = {Qing Liu and Wei Li and Di Liu and Lingyan Li and Jie Li and Na Lv and Fei Liu and Baoli Zhu and Yuguang Zhou and Yuhua Xin and Xiuzhu Dong}, - year = 2021, - journal = {The {ISME} Journal}, - publisher = {Springer Science and Business Media {LLC}}, - volume = 15, - pages = {1844--1857}, - url = {https://doi.org/10.1038/s41396-020-00891-w}, - doi = {10.1038/s41396-020-00891-w}, - number = 6} - -@Article{huo2021cyanobacterial, - title = {Cyanobacterial blooms in China: diversity, distribution, and cyanotoxins}, - author = {Da Huo and Nanqin Gan and Ruozhen Geng and Qi Cao and Lirong Song and Gongliang Yu and Renhui Li}, - year = 2021, - journal = {Harmful Algae}, - publisher = {Elsevier {BV}}, - volume = 109, - pages = 102106, - url = {https://doi.org/10.1016/j.hal.2021.102106}, - doi = {10.1016/j.hal.2021.102106} -} - -@Article{scheffer1993alternative, - title = {Alternative equilibria in shallow lakes}, - author = {M. Scheffer and S.H. Hosper and M-L. Meijer and B. Moss and E. Jeppesen}, - year = 1993, - journal = {Trends in Ecology {\&} Evolution}, - publisher = {Elsevier {BV}}, - volume = 8, - pages = {275--279}, - url = {https://doi.org/10.1016/0169-5347%2893%2990254-m}, - doi = {10.1016/0169-5347(93)90254-m}, - number = 8} - -@Article{qin2009a, - title = {A Drinking Water Crisis in Lake Taihu, China: Linkage to Climatic Variability and Lake Management}, - author = {Boqiang Qin and Guangwei Zhu and Guang Gao and Yunlin Zhang and Wei Li and Hans W. Paerl and Wayne W. Carmichael}, - year = 2009, - journal = {Environmental Management}, - publisher = {Springer Science and Business Media {LLC}}, - volume = 45, - pages = {105--112}, - url = {https://doi.org/10.1007/s00267-009-9393-6}, - doi = {10.1007/s00267-009-9393-6}, - number = 1} - -@Article{davis2009the, - title = {The effects of temperature and nutrients on the growth and dynamics of toxic and non-toxic strains of Microcystis during cyanobacteria blooms}, - author = {Timothy W. Davis and Dianna L. Berry and Gregory L. Boyer and Christopher J. Gobler}, - year = 2009, - journal = {Harmful Algae}, - publisher = {Elsevier {BV}}, - volume = 8, - pages = {715--725}, - url = {https://doi.org/10.1016/j.hal.2009.02.004}, - doi = {10.1016/j.hal.2009.02.004}, - number = 5 -} - - -@article{lu2022driving, - title = {Driving forces for the growth of MIB-producing {{\textit{Planktothricoides raciborskii}}} in a low-latitude reservoir}, - author = {Jinping Lu and Ming Su and Yuliang Su and Bin Wu and Tengxin Cao and Jiao Fang and Jianwei Yu and Honggang Zhang and Min Yang}, - journal = {Water Research}, - pages = {118670}, - year = {2022}, - issn = {0043-1354}, - url = {https://www.sciencedirect.com/science/article/pii/S0043135422006236}, - doi = {10.1016/j.watres.2022.118670}, - keywords = {2-Methylisoborneol (MIB), Cyanobacteria, , Low-latitude, Drinking water reservoir, Musty odor}, - other = {correspond1} -} - -@Article{vermaire2017extrinsic, - title = {Extrinsic vs. Intrinsic Regimes Shifts in Shallow Lakes: Long-Term Response of Cyanobacterial Blooms to Historical Catchment Phosphorus Loading and Climate Warming}, - author = {Jesse C. Vermaire and Zofia E. Taranu and Graham K. MacDonald and Katherine Velghe and Elena M. Bennett and Irene Gregory-Eaves}, - year = 2017, - journal = {Frontiers in Ecology and Evolution}, - publisher = {Frontiers Media {SA}}, - volume = 5, - url = {https://doi.org/10.3389/fevo.2017.00146}, - doi = {10.3389/fevo.2017.00146} -} - -@article{zhao2019evaluation, - title = {Evaluation of the use of eucalyptus to control algae bloom and improve water quality}, - author = {Zhao, Wei and Zheng, Zheng and Zhang, JunLei and Roger, Saint-Fort and Luo, XingZhang}, - year = {2019}, - month = {06}, - date = {2019-06}, - journal = {Science of The Total Environment}, - pages = {412--418}, - volume = {667}, - doi = {10.1016/j.scitotenv.2019.02.276}, - url = {https://linkinghub.elsevier.com/retrieve/pii/S0048969719307740}, - langid = {en} -} - -@article{wurtsbaugh1982effects, - title = {Effects of Copper on Nitrogen Fixation and Growth of Blue-Green Algae in Natural Plankton Associations}, - author = {{Wurtsbaugh}, {Wayne A.} and {Horne}, {Alexander J.}}, - year = {1982}, - month = {12}, - date = {1982-12-01}, - journal = {Canadian Journal of Fisheries and Aquatic Sciences}, - pages = {1636--1641}, - volume = {39}, - number = {12}, - doi = {10.1139/f82-220}, - url = {http://dx.doi.org/10.1139/f82-220}, - langid = {en} -} - -@Article{wang2020critical, - title = {Critical roles of cyanobacteria as reservoir and source for antibiotic resistance genes}, - author = {Zhiyuan Wang and Qiuwen Chen and Jianyun Zhang and Tiesheng Guan and Yuchen Chen and Wenqing Shi}, - year = 2020, - journal = {Environment International}, - publisher = {Elsevier {BV}}, - volume = 144, - pages = 106034, - url = {https://doi.org/10.1016/j.envint.2020.106034}, - doi = {10.1016/j.envint.2020.106034} -} - -@Article{wei2022efficient, - title = {Efficient inhibition of cyanobacteria M. aeruginosa growth using commercial food-grade fumaric acid}, - author = {Peiyun Wei and Hanmin Ma and Heyun Fu and Zhaoyi Xu and Xiaolei Qu}, - year = 2022, - journal = {Chemosphere}, - publisher = {Elsevier {BV}}, - volume = 301, - pages = 134659, - url = {https://doi.org/10.1016/j.chemosphere.2022.134659}, - doi = {10.1016/j.chemosphere.2022.134659} -} - -@Article{barrett1996the, - title = {The control of diatom and cyanobacterial blooms in reservoirs using barley straw}, - author = {P. R. F. Barrett and J.C. Curnow and J.W. Littlejohn}, - year = 1996, - journal = {Hydrobiologia}, - publisher = {Springer Science and Business Media {LLC}}, - volume = 340, - pages = {307--311}, - url = {https://doi.org/10.1007/bf00012773}, - doi = {10.1007/bf00012773}, - number = {1-3} -} - -@Article{zhang2022spatial, - title = {Spatial and temporal dynamics of actinobacteria in drinking water reservoirs: Novel insights into abundance, community structure, and co-existence model}, - author = {Haihan Zhang and Manli Ma and Tinglin Huang and Yutian Miao and Haiyun Li and Kaiwen Liu and Wanqiu Yang and Ben Ma}, - year = 2022, - journal = {Science of The Total Environment}, - publisher = {Elsevier {BV}}, - volume = 814, - pages = 152804, - url = {https://doi.org/10.1016/j.scitotenv.2021.152804}, - doi = {10.1016/j.scitotenv.2021.152804} -} - -@Article{tamulonis2011modeling, - title = {Modeling Filamentous Cyanobacteria Reveals the Advantages of Long and Fast Trichomes for Optimizing Light Exposure}, - author = {Carlos Tamulonis and Marten Postma and Jaap Kaandorp}, - year = 2011, - journal = {{PLoS} {ONE}}, - publisher = {Public Library of Science ({PLoS})}, - volume = 6, - pages = {e22084}, - url = {https://doi.org/10.1371/journal.pone.0022084}, - doi = {10.1371/journal.pone.0022084}, - number = 7, - editor = {Christopher V. Rao} -} - -@Article{hellweger2022models, - title = {Models predict planned phosphorus load reduction will make Lake Erie more toxic}, - author = {Ferdi L. Hellweger and Robbie M. Martin and Falk Eigemann and Derek J. Smith and Gregory J. Dick and Steven W. Wilhelm}, - year = 2022, - journal = {Science}, - publisher = {American Association for the Advancement of Science ({AAAS})}, - volume = 376, - pages = {1001--1005}, - url = {https://doi.org/10.1126/science.abm6791}, - doi = {10.1126/science.abm6791}, - number = 6596} - -@Article{zhang2020interspecific, - title = {Interspecific competition between {{\textit{Microcystis aeruginosa}}} and {{\textit{Pseudanadaena}}} and their production of T\&O compounds}, - author = {Kejia Zhang and Renjie Pan and Zhang Luo and Tuqiao Zhang and Jiajia Fan}, - year = 2020, - journal = {Chemosphere}, - publisher = {Elsevier {BV}}, - volume = 252, - pages = 126509, - url = {https://doi.org/10.1016/j.chemosphere.2020.126509}, - doi = {10.1016/j.chemosphere.2020.126509} -} - -@Article{al2022community, - title = {Community assembly of microbial habitat generalists and specialists in urban aquatic ecosystems explained more by habitat type than pollution gradient}, - author = {Mamun Abdullah Al and Yuanyuan Xue and Peng Xiao and Jing Xu and Huihuang Chen and Yuanyuan Mo and Jeff Shimeta and Jun Yang}, - year = 2022, - journal = {Water Research}, - publisher = {Elsevier {BV}}, - pages = 118693, - url = {https://doi.org/10.1016/j.watres.2022.118693}, - doi = {10.1016/j.watres.2022.118693} -} - -@Article{wang2020sevenyear, - title = {Seven-year dynamics of testate amoeba communities driven more by stochastic than deterministic processes in two subtropical reservoirs}, - author = {Wenping Wang and Kexin Ren and Huihuang Chen and Xiaofei Gao and Regin R{\o}nn and Jun Yang}, - year = 2020, - journal = {Water Research}, - publisher = {Elsevier {BV}}, - volume = 185, - pages = 116232, - url = {https://doi.org/10.1016/j.watres.2020.116232}, - doi = {10.1016/j.watres.2020.116232} -} - -@Article{ma2022the, - title = {The in-situ release of algal bloom populations and the role of prokaryotic communities in their establishment and growth}, - author = {Xiao Ma and Kevin B. Johnson and Bowei Gu and Hao Zhang and Gang Li and Xiaoping Huang and Xiaomin Xia}, - year = 2022, - journal = {Water Research}, - publisher = {Elsevier {BV}}, - volume = 219, - pages = 118565, - url = {https://doi.org/10.1016/j.watres.2022.118565}, - doi = {10.1016/j.watres.2022.118565} -} - -@article{martinez1975note, - title={Note: direct phytoplankton counting techniques, using the haemacytometer}, - author={Martinez, MR and Chakroff, RP and Pantastico, JB}, - journal={Philippine agriculturist}, - year={1975} -} -@Article{boivin2021a, - title = {A facile technique for automatically counting odor-producing algae ({{\textit{Pseudanabaena}}} sp.) in drinking water sources}, - author = {Sandrine Boivin and Eri Hasegawa and Dabide Yamaguchi and Takahiro Fujioka}, - year = 2021, - journal = {Environmental Science: Water Research {\&} Technology}, - publisher = {Royal Society of Chemistry ({RSC})}, - url = {https://doi.org/10.1039/d1ew00101a}, - doi = {10.1039/d1ew00101a} -} - -@Article{fornarelli2013an, - title = {An empirical modeling approach to predict and understand phytoplankton dynamics in a reservoir affected by interbasin water transfers}, - author = {Roberta Fornarelli and Stefano Galelli and Andrea Castelletti and Jason P. Antenucci and Clelia L. Marti}, - year = 2013, - journal = {Water Resources Research}, - publisher = {American Geophysical Union ({AGU})}, - volume = 49, - pages = {3626--3641}, - url = {https://doi.org/10.1002/wrcr.20268}, - doi = {10.1002/wrcr.20268}, - number = 6} - -@Article{gurbuz2003predicting, - title = {Predicting dominant phytoplankton quantities in a reservoir by using neural networks}, - author = {Hasan Gurbuz and Ersin Kivrak and Selcuk Soyupak and Sedat V. Yerli}, - year = 2003, - journal = {Hydrobiologia}, - publisher = {Springer Science and Business Media {LLC}}, - volume = 504, - pages = {133--141}, - url = {https://doi.org/10.1023/b%3Ahydr.0000008513.19329.29}, - doi = {10.1023/b:hydr.0000008513.19329.29}, - number = {1-3} -} - -@Article{cossa1990seasonality, - title = {Seasonality in iron and manganese concentrations of the St. Lawrence River}, - author = {D COSSA and G TREMBLAY and C GOBEIL}, - year = 1990, - journal = {Science of The Total Environment}, - publisher = {Elsevier {BV}}, - volume = {97-98}, - pages = {185--190}, - url = {https://doi.org/10.1016/0048-9697%2890%2990239-q}, - doi = {10.1016/0048-9697(90)90239-q} -} - -@Article{zaw1999iron, - title = {Iron and manganese dynamics in lake water}, - author = {Myint Zaw and Barry Chiswell}, - year = 1999, - journal = {Water Research}, - publisher = {Elsevier {BV}}, - volume = 33, - pages = {1900--1910}, - url = {https://doi.org/10.1016/s0043-1354%2898%2900360-1}, - doi = {10.1016/s0043-1354(98)00360-1}, - number = 8} - -@Article{li2022initial, - title = {Initial Formation and Accumulation of Manganese Deposits in Drinking Water Pipes: Investigating the Role of Microbial-Mediated Processes}, - author = {Guiwei Li and Yuliang Su and Bin Wu and Guohang Han and Jianwei Yu and Min Yang and Baoyou Shi}, - year = 2022, - journal = {Environmental Science \& Technology}, - publisher = {American Chemical Society ({ACS})}, - volume = 56, - pages = {5497--5507}, - url = {https://doi.org/10.1021/acs.est.1c08293}, - doi = {10.1021/acs.est.1c08293}, - number = 9} - -@Article{su2021ecological, - title = {Ecological niche and in-situ control of {MIB} producers in source water}, - author = {Ming Su and MD. Suruzzaman and Yiping Zhu and Jinping Lu and Jianwei Yu and Yu Zhang and Min Yang}, - year = 2021, - journal = {Journal of Environmental Sciences}, - publisher = {Elsevier {BV}}, - volume = 110, - pages = {119--128}, - url = {https://doi.org/10.1016/j.jes.2021.03.026}, - doi = {10.1016/j.jes.2021.03.026}, - other = {author1} -} - -@Article{zengler2018the, - title = {The social network of microorganisms {\textemdash} how auxotrophies shape complex communities}, - author = {Karsten Zengler and Livia S. Zaramela}, - year = 2018, - journal = {Nature Reviews Microbiology}, - publisher = {Springer Science and Business Media {LLC}}, - volume = 16, - pages = {383--390}, - url = {https://doi.org/10.1038/s41579-018-0004-5}, - doi = {10.1038/s41579-018-0004-5}, - number = 6} - -@Article{su2022lightdominated, - title = {Light-dominated selection shaping filamentous cyanobacterial assemblages drives odor problem in a drinking water reservoir}, - author = {Ming Su and Yiping Zhu and Tom Andersen and Xianyun Wang and Zhiyong Yu and Jinping Lu and Yichao Song and Tengxin Cao and Jianwei Yu and Yu Zhang and Min Yang}, - year = 2022, - journal = {npj Clean Water}, - publisher = {Springer Science and Business Media {LLC}}, - volume = 5, - pages = {37}, - url = {https://doi.org/10.1038/s41545-022-00181-2}, - doi = {10.1038/s41545-022-00181-2}, - number = 1, - other = {author1} -} - -@Article{penn2000seasonality, - title = {Seasonality in phosphorus release rates from the sediments of a hypereutrophic lake under a matrix of {pH} and redox conditions}, - author = {Michael R Penn and Martin T Auer and Susan M Doerr and Charles T Driscoll and Carol M Brooks and Steven W Effler}, - year = 2000, - journal = {Canadian Journal of Fisheries and Aquatic Sciences}, - publisher = {Canadian Science Publishing}, - volume = 57, - pages = {1033--1041}, - url = {https://doi.org/10.1139/f00-035}, - doi = {10.1139/f00-035}, - number = 5} - -@Article{ho2005effect, - title = {Effect of {NOM}, turbidity and floc size on the {PAC} adsorption of {MIB} during alum coagulation}, - author = {Lionel Ho and Gayle Newcombe}, - year = 2005, - journal = {Water Research}, - publisher = {Elsevier {BV}}, - volume = 39, - pages = {3668--3674}, - url = {https://doi.org/10.1016/j.watres.2005.06.028}, - doi = {10.1016/j.watres.2005.06.028}, - number = 15} - -@Article{geer2017predicting, - title = {Predicting In Situ Responses of Taste- and Odor-Producing Algae in a Southeastern {US} Reservoir to a Sodium Carbonate Peroxyhydrate Algaecide Using a Laboratory Exposure-Response Model}, - author = {Tyler D. Geer and Alyssa J. Calomeni and Ciera M. Kinley and Kyla J. Iwinski and John H. Rodgers}, - year = 2017, - journal = {Water, Air, {\&} Soil Pollution}, - publisher = {Springer Science and Business Media {LLC}}, - volume = 228, - url = {https://doi.org/10.1007/s11270-016-3229-9}, - doi = {10.1007/s11270-016-3229-9}, - number = 2} - -@Article{du2022comparative, - title = {Comparative genomic analysis of five freshwater cyanophages and reference-guided metagenomic data mining}, - author = {Kang Du and Feng Yang and Jun-Tao Zhang and Rong-Cheng Yu and Ziqing Deng and Wei-Fang Li and Yuxing Chen and Qiong Li and Cong-Zhao Zhou}, - year = 2022, - journal = {Microbiome}, - publisher = {Springer Science and Business Media {LLC}}, - volume = 10, - url = {https://doi.org/10.1186/s40168-022-01324-w}, - doi = {10.1186/s40168-022-01324-w}, - number = 1} - -@Article{zhang2022seasonal, - title = {Seasonal dynamics and co-existence patterns of phytoplankton and micro-eukaryotes in a temperate drinking water reservoir}, - author = {Haihan Zhang and Yansong Yang and Xiang Liu and Tinglin Huang and Ben Ma and Nan Li and Wanqiu Yang and Haiyun Li and Kexin Zhao}, - year = 2022, - journal = {Science of The Total Environment}, - publisher = {Elsevier {BV}}, - pages = 159160, - url = {https://doi.org/10.1016/j.scitotenv.2022.159160}, - doi = {10.1016/j.scitotenv.2022.159160} -} - -@Article{basiuk2011ecotoxicological, - title = {Ecotoxicological Effects of Carbon Nanomaterials on Algae, Fungi and Plants}, - author = {Elena V. Basiuk and Omar E. Ochoa-Olmos and Le{\'{o}}n F. De la Mora-Estrada}, - year = 2011, - journal = {Journal of Nanoscience and Nanotechnology}, - publisher = {American Scientific Publishers}, - volume = 11, - pages = {3016--3038}, - url = {https://doi.org/10.1166/jnn.2011.3767}, - doi = {10.1166/jnn.2011.3767}, - number = 4} - -@InCollection{agrawal2012toxic, - title = {Toxic Cyanobacteria in Water and Their Public Health Consequences}, - author = {Anju Agrawal and Krishna Gopal}, - year = 2012, - booktitle = {Biomonitoring of Water and Waste Water}, - publisher = {Springer India}, - pages = {135--147}, - url = {https://doi.org/10.1007/978-81-322-0864-8_13}, - doi = {10.1007/978-81-322-0864-8_13} -} - -@Article{cheung2013toxinproducing, - title = {Toxin-producing cyanobacteria in freshwater: A review of the problems, impact on drinking water safety, and efforts for protecting public health}, - author = {Melissa Y. Cheung and Song Liang and Jiyoung Lee}, - year = 2013, - journal = {Journal of Microbiology}, - publisher = {Springer Science and Business Media {LLC}}, - volume = 51, - pages = {1--10}, - url = {https://doi.org/10.1007/s12275-013-2549-3}, - doi = {10.1007/s12275-013-2549-3}, - number = 1} - -@Article{naceradska2019on, - title = {On the importance of {pH} value in coagulation}, - author = {Jana Naceradska and Lenka Pivokonska and Martin Pivokonsky}, - year = 2019, - journal = {Journal of Water Supply: Research and Technology-Aqua}, - publisher = {{IWA} Publishing}, - volume = 68, - pages = {222--230}, - url = {https://doi.org/10.2166/aqua.2019.155}, - doi = {10.2166/aqua.2019.155}, - number = 3} - -@Article{figueiredo2004microcystinproducing, - title = {Microcystin-producing blooms{\textemdash}a serious global public health issue}, - author = {Daniela R. de Figueiredo and Ulisses M. Azeiteiro and S{\'{o}}nia M. Esteves and Fernando J.M. Gon{\c{c}}alves and M{\'{a}}rio J. Pereira}, - year = 2004, - journal = {Ecotoxicology and Environmental Safety}, - publisher = {Elsevier {BV}}, - volume = 59, - pages = {151--163}, - url = {https://doi.org/10.1016/j.ecoenv.2004.04.006}, - doi = {10.1016/j.ecoenv.2004.04.006}, - number = 2} - -@Article{matsunaga1989anatoxinas, - title = {Anatoxin-a(s), a potent anticholinesterase from {{\textit{Anabaena flos-aquae}}}}, - author = {Shigeki Matsunaga and Richard E. Moore and Walter P. Niemczura and Wayne W. Carmichael}, - year = 1989, - journal = {Journal of the American Chemical Society}, - publisher = {American Chemical Society ({ACS})}, - volume = 111, - pages = {8021--8023}, - url = {https://doi.org/10.1021/ja00202a057}, - doi = {10.1021/ja00202a057}, - number = 20} - -@Article{qin2012lake, - title = {Lake eutrophication and its ecosystem response}, - author = {BoQiang Qin and Guang Gao and GuangWei Zhu and YunLin Zhang and YuZhi Song and XiangMing Tang and Hai Xu and JianMing Deng}, - year = 2012, - journal = {Chinese Science Bulletin}, - publisher = {Springer Science and Business Media {LLC}}, - volume = 58, - pages = {961--970}, - url = {https://doi.org/10.1007/s11434-012-5560-x}, - doi = {10.1007/s11434-012-5560-x}, - number = 9} - -@misc{bruchet2019taste, - title = {Taste and Odour in Source and Drinking Water: Causes, Controls, and Consequences.}, - author = {Bruchet, A and LIN, TF and WATSON, S and DIETRICH, AM and SUFFET, IH}, - year = {2019} -} - -@incollection{chorus2021assessing, - title = {Assessing and managing cyanobacterial risks in water-use systems}, - author = {Chorus, Ingrid and McKeown, Rory Moses}, - booktitle = {Toxic Cyanobacteria in Water}, - pages = {401--432}, - year = {2021}, - publisher = {CRC Press} -} -@Article{wert2013intracellular, - title = {Intracellular Organic Matter from Cyanobacteria as a Precursor for Carbonaceous and Nitrogenous Disinfection Byproducts}, - author = {Eric C. Wert and Fernando L. Rosario-Ortiz}, - year = 2013, - journal = {Environmental Science {\&} Technology}, - publisher = {American Chemical Society ({ACS})}, - volume = 47, - pages = {6332--6340}, - url = {https://doi.org/10.1021/es400834k}, - doi = {10.1021/es400834k}, - number = 12} - -@Article{jiang2022community, - title = {Community succession during the preventive control of cyanobacterial bloom by hydrogen peroxide in an aquatic microcosm}, - author = {Yunhan Jiang and Youshuai Fang and Ying Liu and Binhua Liu and Jian Zhang}, - year = 2022, - journal = {Ecotoxicology and Environmental Safety}, - publisher = {Elsevier {BV}}, - volume = 237, - pages = 113546, - url = {https://doi.org/10.1016/j.ecoenv.2022.113546}, - doi = {10.1016/j.ecoenv.2022.113546} -} - -@InCollection{dumay2016proteins, - title = {Proteins and Pigments}, - author = {J. Dumay and M. Moran{\c{c}}ais}, - year = 2016, - booktitle = {Seaweed in Health and Disease Prevention}, - publisher = {Elsevier}, - pages = {275--318}, - url = {https://doi.org/10.1016/b978-0-12-802772-1.00009-9}, - doi = {10.1016/b978-0-12-802772-1.00009-9} -} - -@Article{guiry2012how, - title = {How Many Species of Algae Are There?}, - author = {Michael D. Guiry}, - year = 2012, - journal = {Journal of Phycology}, - publisher = {Wiley}, - volume = 48, - pages = {1057--1063}, - url = {https://doi.org/10.1111/j.1529-8817.2012.01222.x}, - doi = {10.1111/j.1529-8817.2012.01222.x}, - number = 5} - -@Article{lichtenthaler2001chlorophylls, - title = {Chlorophylls and Carotenoids: Measurement and Characterization by {UV}-{VIS} Spectroscopy}, - author = {Hartmut K. Lichtenthaler and Claus Buschmann}, - year = 2001, - journal = {Current Protocols in Food Analytical Chemistry}, - publisher = {Wiley}, - volume = 1, - pages = {F4.3.1--F4.3.8}, - url = {https://doi.org/10.1002/0471142913.faf0403s01}, - doi = {10.1002/0471142913.faf0403s01}, - number = 1} - -@Article{basheva2018content, - title = {Content of phycoerythrin, phycocyanin, alophycocyanin and phycoerythrocyanin in some cyanobacterial strains: Applications}, - author = {Diyana Basheva and Dzhemal Moten and Plamen Stoyanov and Detelina Belkinova and Rumen Mladenov and Ivanka Teneva}, - year = 2018, - journal = {Engineering in Life Sciences}, - publisher = {Wiley}, - volume = 18, - pages = {861--866}, - url = {https://doi.org/10.1002/elsc.201800035}, - doi = {10.1002/elsc.201800035}, - number = 11} - -@Article{kursar1983photosynthetic, - title = {Photosynthetic Unit Organization in a Red Alga}, - author = {Thomas A. Kursar and Randall S. Alberte}, - year = 1983, - journal = {Plant Physiology}, - publisher = {Oxford University Press ({OUP})}, - volume = 72, - pages = {409--414}, - url = {https://doi.org/10.1104/pp.72.2.409}, - doi = {10.1104/pp.72.2.409}, - number = 2} - -@Article{kaplan1986the, - title = {The {{\textit{Azolla-Anabaena azollae}}} Relationship}, - author = {Drora Kaplan and Harry E. Calvert and Gerald A. Peters}, - year = 1986, - journal = {Plant Physiology}, - publisher = {Oxford University Press ({OUP})}, - volume = 80, - pages = {884--890}, - url = {https://doi.org/10.1104/pp.80.4.884}, - doi = {10.1104/pp.80.4.884}, - number = 4} - -@Article{lauceri2017chlorophyll, - title = {Chlorophyll a interference in phycocyanin and allophycocyanin spectrophotometric quantification}, - author = {Rosaria Lauceri and Mariano Bresciani and Andrea Lami and Giuseppe Morabito}, - year = 2017, - journal = {Journal of Limnology}, - publisher = {{PAGEPress} Publications}, - url = {https://doi.org/10.4081/jlimnol.2017.1691}, - doi = {10.4081/jlimnol.2017.1691} -} - -@Article{humily2013a, - title = {A Gene Island with Two Possible Configurations Is Involved in Chromatic Acclimation in Marine Synechococcus}, - author = {Florian Humily and Fr{\'{e}}d{\'{e}}ric Partensky and Christophe Six and Gregory K. Farrant and Morgane Ratin and Dominique Marie and Laurence Garczarek}, - year = 2013, - journal = {{PLoS} {ONE}}, - publisher = {Public Library of Science ({PLoS})}, - volume = 8, - pages = {e84459}, - url = {https://doi.org/10.1371/journal.pone.0084459}, - doi = {10.1371/journal.pone.0084459}, - number = 12, - editor = {Francisco Rodriguez-Valera} -} - -@Article{grebert2018light, - title = {Light color acclimation is a key process in the global ocean distribution of {{\textit{Synechococcus cyanobacteria}}}}, - author = {Th{\'{e}}ophile Gr{\'{e}}bert and Hugo Dor{\'{e}} and Fr{\'{e}}d{\'{e}}ric Partensky and Gregory K. Farrant and Emmanuel S. Boss and Marc Picheral and Lionel Guidi and St{\'{e}}phane Pesant and David J. Scanlan and Patrick Wincker and Silvia G. Acinas and David M. Kehoe and Laurence Garczarek}, - year = 2018, - journal = {Proceedings of the National Academy of Sciences}, - publisher = {Proceedings of the National Academy of Sciences}, - volume = 115, - url = {https://doi.org/10.1073/pnas.1717069115}, - doi = {10.1073/pnas.1717069115}, - number = 9} - -@Article{tan2022characterisation, - title = {Characterisation and selection of freshwater cyanobacteria for phycobiliprotein contents}, - author = {Hui Teng Tan and Fatimah Md. Yusoff and Yam Sim Khaw and Muhammad Farhan Nazarudin and Nur Amirah Izyan Noor Mazli and Siti Aqlima Ahmad and Noor Azmi Shaharuddin and Tatsuki Toda}, - year = 2022, - journal = {Aquaculture International}, - publisher = {Springer Science and Business Media {LLC}}, - url = {https://doi.org/10.1007/s10499-022-00985-6}, - doi = {10.1007/s10499-022-00985-6} -} - -@Article{sanfilippo2019chromatic, - title = {Chromatic Acclimation in Cyanobacteria: A Diverse and Widespread Process for Optimizing Photosynthesis}, - author = {Joseph E. Sanfilippo and Laurence Garczarek and Fr{\'{e}}d{\'{e}}ric Partensky and David M. Kehoe}, - year = 2019, - journal = {Annual Review of Microbiology}, - publisher = {Annual Reviews}, - volume = 73, - pages = {407--433}, - url = {https://doi.org/10.1146/annurev-micro-020518-115738}, - doi = {10.1146/annurev-micro-020518-115738}, - number = 1} - -@Article{marsac1977occurrence, - title = {Occurrence and nature of chromatic adaptation in cyanobacteria}, - author = {N Tandeau de Marsac}, - year = 1977, - journal = {Journal of Bacteriology}, - publisher = {American Society for Microbiology}, - volume = 130, - pages = {82--91}, - url = {https://doi.org/10.1128/jb.130.1.82-91.1977}, - doi = {10.1128/jb.130.1.82-91.1977}, - number = 1} - -@Article{gan2014extensive, - title = {Extensive remodeling of a cyanobacterial photosynthetic apparatus in far-red light}, - author = {Fei Gan and Shuyi Zhang and Nathan C. Rockwell and Shelley S. Martin and J. Clark Lagarias and Donald A. Bryant}, - year = 2014, - journal = {Science}, - publisher = {American Association for the Advancement of Science ({AAAS})}, - volume = 345, - pages = {1312--1317}, - url = {https://doi.org/10.1126/science.1256963}, - doi = {10.1126/science.1256963}, - number = 6202} - -@Article{gan2014occurrence, - title = {Occurrence of Far-Red Light Photoacclimation ({FaRLiP}) in Diverse Cyanobacteria}, - author = {Fei Gan and Gaozhong Shen and Donald Bryant}, - year = 2014, - journal = {Life}, - publisher = {{MDPI} {AG}}, - volume = 5, - pages = {4--24}, - url = {https://doi.org/10.3390/life5010004}, - doi = {10.3390/life5010004}, - number = 1} - -@Article{oelmuller1988changes, - title = {Changes in Accumulation and Synthesis of Transcripts Encoding Phycobilisome Components during Acclimation of {{\textit{Fremyella diplosiphon}}} to Different Light Qualities}, - author = {R. Oelmüller and P. B. Conley and N. Federspiel and W. R. Briggs and A. R. Grossman}, - year = 1988, - journal = {Plant Physiology}, - publisher = {Oxford University Press ({OUP})}, - volume = 88, - pages = {1077--1083}, - url = {https://doi.org/10.1104/pp.88.4.1077}, - doi = {10.1104/pp.88.4.1077}, - number = 4} - -@Article{federspiel1990characterization, - title = {Characterization of the light-regulated operon encoding the phycoerythrin-associated linker proteins from the cyanobacterium Fremyella diplosiphon}, - author = {N A Federspiel and A R Grossman}, - year = 1990, - journal = {Journal of Bacteriology}, - publisher = {American Society for Microbiology}, - volume = 172, - pages = {4072--4081}, - url = {https://doi.org/10.1128/jb.172.7.4072-4081.1990}, - doi = {10.1128/jb.172.7.4072-4081.1990}, - number = 7} - -@Article{conley1988molecular, - title = {Molecular characterization and evolution of sequences encoding light-harvesting components in the chromatically adapting cyanobacterium Fremyella diplosiphon}, - author = {Pamela B. Conley and Peggy G. Lemaux and Arthur Grossman}, - year = 1988, - journal = {Journal of Molecular Biology}, - publisher = {Elsevier {BV}}, - volume = 199, - pages = {447--465}, - url = {https://doi.org/10.1016/0022-2836%2888%2990617-1}, - doi = {10.1016/0022-2836(88)90617-1}, - number = 3} - -@Article{conley1986genes, - title = {Genes encoding major light-harvesting polypeptides are clustered on the genome of the cyanobacterium Fremyella diplosiphon.}, - author = {P B Conley and P G Lemaux and T L Lomax and A R Grossman}, - year = 1986, - journal = {Proceedings of the National Academy of Sciences}, - publisher = {Proceedings of the National Academy of Sciences}, - volume = 83, - pages = {3924--3928}, - url = {https://doi.org/10.1073/pnas.83.11.3924}, - doi = {10.1073/pnas.83.11.3924}, - number = 11} - -@Article{grossman1990lightharvesting, - title = {Light-harvesting proteins of diatoms: Their relationship to the chlorophyll a/b binding proteins of higher plants and their mode of transport into plastids}, - author = {Arthur Grossman and Annamaria Manodori and Donna Snyder}, - year = 1990, - journal = {Molecular and General Genetics {MGG}}, - publisher = {Springer Science and Business Media {LLC}}, - volume = 224, - pages = {91--100}, - url = {https://doi.org/10.1007/bf00259455}, - doi = {10.1007/bf00259455}, - number = 1} - -@Article{kehoe2010chromatic, - title = {Chromatic adaptation and the evolution of light color sensing in cyanobacteria}, - author = {David M. Kehoe}, - year = 2010, - journal = {Proceedings of the National Academy of Sciences}, - publisher = {Proceedings of the National Academy of Sciences}, - volume = 107, - pages = {9029--9030}, - url = {https://doi.org/10.1073/pnas.1004510107}, - doi = {10.1073/pnas.1004510107}, - number = 20} - -@Article{stoweevans2004genomic, - title = {Genomic {DNA} Microarray Analysis: Identification of New Genes Regulated by Light Color in the Cyanobacterium {{\textit{Fremyella diplosiphon}}}}, - author = {Emily L. Stowe-Evans and James Ford and David M. Kehoe}, - year = 2004, - journal = {Journal of Bacteriology}, - publisher = {American Society for Microbiology}, - volume = 186, - pages = {4338--4349}, - url = {https://doi.org/10.1128/jb.186.13.4338-4349.2004}, - doi = {10.1128/jb.186.13.4338-4349.2004}, - number = 13} - -@Article{pattanaik2012light, - title = {Light Quantity Affects the Regulation of Cell Shape in Fremyella diplosiphon}, - author = {Bagmi Pattanaik and Melissa J. Whitaker and Beronda L. Montgomery}, - year = 2012, - journal = {Frontiers in Microbiology}, - publisher = {Frontiers Media {SA}}, - volume = 3, - url = {https://doi.org/10.3389/fmicb.2012.00170}, - doi = {10.3389/fmicb.2012.00170} -} - -@Article{yerrapragada2015extreme, - title = {Extreme Sensory Complexity Encoded in the 10-Megabase Draft Genome Sequence of the Chromatically Acclimating Cyanobacterium {{\textit{Tolypothrix}}} sp. {PCC} 7601}, - author = {Shaila Yerrapragada and Animesh Shukla and Kymberlie Hallsworth-Pepin and Kwangmin Choi and Aye Wollam and Sandra Clifton and Xiang Qin and Donna Muzny and Sriram Raghuraman and Haleh Ashki and Akif Uzman and Sarah K. Highlander and Bartlomiej G. Fryszczyn and George E. Fox and Madhan R. Tirumalai and Yamei Liu and Sun Kim and David M. Kehoe and George M. Weinstock}, - year = 2015, - journal = {Genome Announcements}, - publisher = {American Society for Microbiology}, - volume = 3, - url = {https://doi.org/10.1128/genomea.00355-15}, - doi = {10.1128/genomea.00355-15}, - number = 3} - -@Article{terauchi2004rcae, - title = {{RcaE} is a complementary chromatic adaptation photoreceptor required for green and red light responsiveness}, - author = {Kazuki Terauchi and Beronda L. Montgomery and Arthur R. Grossman and J. Clark Lagarias and David M. Kehoe}, - year = 2004, - journal = {Molecular Microbiology}, - publisher = {Wiley}, - volume = 51, - pages = {567--577}, - url = {https://doi.org/10.1046/j.1365-2958.2003.03853.x}, - doi = {10.1046/j.1365-2958.2003.03853.x}, - number = 2} - -@Article{kolodny2022phycobilisome, - title = {Phycobilisome light-harvesting efficiency in natural populations of the marine cyanobacteria Synechococcus increases with depth}, - author = {Yuval Kolodny and Yoav Avrahami and Hagit Zer and Miguel J. Frada and Yossi Paltiel and Nir Keren}, - year = 2022, - journal = {Communications Biology}, - publisher = {Springer Science and Business Media {LLC}}, - volume = 5, - url = {https://doi.org/10.1038/s42003-022-03677-2}, - doi = {10.1038/s42003-022-03677-2}, - number = 1} - - -@Article{brody1957excitation, - title = {Excitation Lifetime of Photosynthetic Pigments {{\textit{in vitro}}} and {{\textit{in vivo}}}}, - author = {Seymour S. Brody and Eugene Rabinowitch}, - year = 1957, - journal = {Science}, - publisher = {American Association for the Advancement of Science ({AAAS})}, - volume = 125, - pages = {555--555}, - url = {https://doi.org/10.1126/science.125.3247.555}, - doi = {10.1126/science.125.3247.555}, - number = 3247} - -@Article{falkowski2017what, - title = {What limits photosynthetic energy conversion efficiency in nature? Lessons from the oceans}, - author = {Paul G. Falkowski and Hanzhi Lin and Maxim Y. Gorbunov}, - year = 2017, - journal = {Philosophical Transactions of the Royal Society B: Biological Sciences}, - publisher = {The Royal Society}, - volume = 372, - pages = 20160376, - url = {https://doi.org/10.1098/rstb.2016.0376}, - doi = {10.1098/rstb.2016.0376}, - number = 1730} - -@Article{gillbro1989carotenoid, - title = {Carotenoid fluorescence}, - author = {Tomas Gillbro and Richard J. Cogdell}, - year = 1989, - journal = {Chemical Physics Letters}, - publisher = {Elsevier {BV}}, - volume = 158, - pages = {312--316}, - url = {https://doi.org/10.1016/0009-2614%2889%2987342-7}, - doi = {10.1016/0009-2614(89)87342-7}, - number = {3-4} -} - -@Article{glazer1983fluorescent, - title = {Fluorescent tandem phycobiliprotein conjugates. Emission wavelength shifting by energy transfer}, - author = {A.N. Glazer and L. Stryer}, - year = 1983, - journal = {Biophysical Journal}, - publisher = {Elsevier {BV}}, - volume = 43, - pages = {383--386}, - url = {https://doi.org/10.1016/s0006-3495%2883%2984361-6}, - doi = {10.1016/s0006-3495(83)84361-6}, - number = 3} - -@InCollection{choi2023physical, - title = {Physical Sensors: Fluorescence Sensors}, - author = {Yong-Joon Choi and Kazuaki Sawada}, - year = 2023, - booktitle = {Encyclopedia of Sensors and Biosensors}, - publisher = {Elsevier}, - pages = {1--19}, - url = {https://doi.org/10.1016/b978-0-12-822548-6.00095-9}, - doi = {10.1016/b978-0-12-822548-6.00095-9} -} - -@Article{lichtenthaler2001chlorophylls, - title = {Chlorophylls and Carotenoids: Measurement and Characterization by {UV}-{VIS} Spectroscopy}, - author = {Hartmut K. Lichtenthaler and Claus Buschmann}, - year = 2001, - journal = {Current Protocols in Food Analytical Chemistry}, - publisher = {Wiley}, - volume = 1, - pages = {F4.3.1--F4.3.8}, - url = {https://doi.org/10.1002/0471142913.faf0403s01}, - doi = {10.1002/0471142913.faf0403s01}, - number = 1} - -@Article{beddard1975fluorescence, - title = {Fluorescence lifetimes in the photosynthetic unit}, - author = {G. S. BEDDARD and G. PORTER and C. J. TREDWELL and J. BARBER}, - year = 1975, - journal = {Nature}, - publisher = {Springer Science and Business Media {LLC}}, - volume = 258, - pages = {166--168}, - url = {https://doi.org/10.1038/258166a0}, - doi = {10.1038/258166a0}, - number = 5531} - -@Article{holzwarth1986fluorescence, - title = {{FLUORESCENCE} {LIFETIMES} {IN} {PHOTOSYNTHETIC} {SYSTEMS}}, - author = {Alfred R. Holzwarth}, - year = 1986, - journal = {Photochemistry and Photobiology}, - publisher = {Wiley}, - volume = 43, - pages = {707--725}, - url = {https://doi.org/10.1111/j.1751-1097.1986.tb05650.x}, - doi = {10.1111/j.1751-1097.1986.tb05650.x}, - number = 6} - -@Article{zhang2021fluorescence, - title = {Fluorescence recovery after photobleaching: analyses of cyanobacterial phycobilisomes reveal intrinsic fluorescence recovery}, - author = {Nan Zhang and Kang Li and Bin-Bin Xie and Xiu-Lan Chen and Bai-Cheng Zhou and Hai-Nan Su and Yu-Zhong Zhang}, - year = 2021, - journal = {Marine Life Science {\&} Technology}, - publisher = {Springer Science and Business Media {LLC}}, - volume = 3, - pages = {427--433}, - url = {https://doi.org/10.1007/s42995-021-00104-z}, - doi = {10.1007/s42995-021-00104-z}, - number = 4} - -@Book{zhang2013lan, - title = {蓝藻光合作用捕光色素蛋白复合物--早单体的组装机制及功能调节}, - author = {张楠}, - year = 2013, - publisher = {山东大学}, - volume = 2013 -} -@Article{wang2020assessing, - title = {Assessing the hidden social risk caused by odor in drinking water through population behavioral responses using economic burden}, - author = {Chunmiao Wang and Wei An and Qingyuan Guo and Zeyu Jia and Qi Wang and Jianwei Yu and Min Yang}, - year = 2020, - journal = {Water Research}, - publisher = {Elsevier {BV}}, - volume = 172, - pages = 115507, - url = {https://doi.org/10.1016/j.watres.2020.115507}, - doi = {10.1016/j.watres.2020.115507} -} - -@Article{huang2020identifying, - title = {Identifying the function of activated carbon surface chemical properties in the removability of two common odor compounds}, - author = {Xin Huang and Baoyou Shi and Haotian Hao and Yuliang Su and Bin Wu and Zeyu Jia and Chunmiao Wang and Qi Wang and Min Yang and Jianwei Yu}, - year = 2020, - journal = {Water Research}, - publisher = {Elsevier {BV}}, - volume = 178, - pages = 115797, - url = {https://doi.org/10.1016/j.watres.2020.115797}, - doi = {10.1016/j.watres.2020.115797} -} - -@Article{jones2007modelling, - title = {Modelling the effects of changing retention time on abundance and composition of phytoplankton species in a small lake}, - author = {I. D. Jones and J. A. Elliott}, - year = 2007, - journal = {Freshwater Biology}, - publisher = {Wiley}, - volume = 52, - pages = {988--997}, - url = {https://doi.org/10.1111/j.1365-2427.2007.01746.x}, - doi = {10.1111/j.1365-2427.2007.01746.x}, - number = 6} - -@Article{romo2012water, - title = {Water residence time and the dynamics of toxic cyanobacteria}, - author = {Susana Romo and Juan Soria and Francisca Fern{\'{a}}ndez and Youness Ouahid and {\'{A}}ngel Bar{\'{o}}n-Sol{\'{a}}}, - year = 2012, - journal = {Freshwater Biology}, - publisher = {Wiley}, - volume = 58, - pages = {513--522}, - url = {https://doi.org/10.1111/j.1365-2427.2012.02734.x}, - doi = {10.1111/j.1365-2427.2012.02734.x}, - number = 3} - -@Article{fan2018a, - title = {A Simple Alternative Method for Preservation of 2-Methylisoborneol in Water Samples}, - author = {Chun-Cheng Fan and Yi-Ting Chiu and Tsair-Fuh Lin}, - year = 2018, - journal = {International Journal of Environmental Research and Public Health}, - publisher = {{MDPI} {AG}}, - volume = 15, - pages = 1015, - url = {https://doi.org/10.3390/ijerph15051015}, - doi = {10.3390/ijerph15051015}, - number = 5} - -@Article{walsby1997the, - title = {The selective advantage of buoyancy provided by gas vesicles for planktonic cyanobacteria in the {Baltic Sea}}, - volume = {136}, - DOI = {10.1046/j.1469-8137.1997.00754.x}, - number = {3}, - journal = {New Phytologist}, - publisher = {Cambridge University Press}, - author = {Walsby, Anthony E. and Hayes, Paul K. and Boje, Rolf and Stal, Lucas J.}, - year = {1997}, - pages = {407–417}} - -@Article{yagi1988musty, - title = {Musty Odour Problems in Lake Biwa 1982-1987}, - author = {Masakazu Yagi}, - year = 1988, - journal = {Water Science and Technology}, - publisher = {{IWA} Publishing}, - volume = 20, - pages = {133--142}, - url = {https://doi.org/10.2166/wst.1988.0234}, - doi = {10.2166/wst.1988.0234}, - number = {8-9} -} - -@Article{gao2018dominance, - title = {Dominance and Growth Factors of {{\textit{Pseudanabaena} sp.}} in drinking Water Source Reservoirs, Southern China}, - author = {Jingsi Gao and Jia Zhu and Maowei Wang and Wenyi Dong}, - year = 2018, - journal = {Sustainability}, - publisher = {{MDPI} {AG}}, - volume = 10, - pages = 3936, - url = {https://doi.org/10.3390/su10113936}, - doi = {10.3390/su10113936}, - number = 11} - -@Article{sun2022effect, - title = {Effect of tributary inflow on reservoir turbidity current}, - author = {Yining Sun and Ji Li and Zhixian Cao and Alistair G. L. Borthwick and J{\'{a}}nos J{\'{o}}zsa}, - year = 2022, - journal = {Environmental Fluid Mechanics}, - publisher = {Springer Science and Business Media {LLC}}, - url = {https://doi.org/10.1007/s10652-022-09856-3}, - doi = {10.1007/s10652-022-09856-3} -} - -@Article{burford2006a, - title = {A comparison of phytoplankton community assemblages in artificially and naturally mixed subtropical water reservoirs}, - author = {Michele A. Burford and Mark J. O'donohue}, - year = 2006, - journal = {Freshwater Biology}, - publisher = {Wiley}, - volume = 51, - pages = {973--982}, - url = {https://doi.org/10.1111/j.1365-2427.2006.01536.x}, - doi = {10.1111/j.1365-2427.2006.01536.x}, - number = 5} - -@Article{wan2021dredging, - title = {Dredging alleviates cyanobacterial blooms by weakening diversity maintenance of bacterioplankton community}, - author = {Wenjie Wan and Geoffrey Michael Gadd and Ji-Dong Gu and Donglan He and Wenzhi Liu and Wenke Yuan and Luping Ye and Yuyi Yang}, - year = 2021, - journal = {Water Research}, - publisher = {Elsevier {BV}}, - volume = 202, - pages = 117449, - url = {https://doi.org/10.1016/j.watres.2021.117449}, - doi = {10.1016/j.watres.2021.117449} -} - -@article{moustaka2022differential, - title = {Differential Effect of Hydroxen Peroxide on Toxic Cyanobacteria of Hypertrophic Mediterranean Waterbodies}, - author = {Moustaka-Gouni, Maria and Poulimenakou, Vasiliki and Papadimitriou, Theodoti and Paxinou, Aikaterini and Stefanidou, Natassa and Laspidou, Chrysi S and Kormas, Konstantinos A and Katsiapi, Matina}, - journal = {Sustainability}, - year = {2022}, - publisher = {MDPI AG} -} - -@article{van1995influence, - title = {The influence of artificial mixing and other factors on algal biomass in the Biesbosch reservoirs}, - author = {Van Breeman, LWCA and Ketelaars, HAM}, - journal = {Aqua- Journal of Water Supply: Research and Technology[AQUA J. WATER SUPPLY TECHNOL.].}, - volume = {44}, - year = {1995} -} - -@Manual{harrell2022hmisc, - title = {Hmisc: {Harrell Miscellaneous}}, - author = {Frank E {Harrell Jr}}, - year = {2022}, - note = {R package version 4.7-2}, - url = {https://CRAN.R-project.org/package=Hmisc}, - } - -@book{whitton2007ecology, - title = {The ecology of cyanobacteria: their diversity in time and space}, - author = {Whitton, Brian A and Potts, Malcolm}, - year = {2007}, - publisher = {Springer Science \& Business Media} -} - -@Article{yang2020effect, - title = {Effect of hydraulic load on thermal stratification in karst cascade hydropower reservoirs, {Southwest China}}, - author = {Xinyue Yang and Yajun Li and Baoli Wang and Jing Xiao and Meiling Yang and Cong-Qiang Liu}, - year = 2020, - journal = {Journal of Hydrology: Regional Studies}, - publisher = {Elsevier {BV}}, - volume = 32, - pages = 100748, - url = {https://doi.org/10.1016/j.ejrh.2020.100748}, - doi = {10.1016/j.ejrh.2020.100748} -} - -@article{wang2021experimental, - title = {An experimental and numerical study of turbidity currents entering a stratified reservoir}, - author = {Wang, Rui and Mao, Xi and Gao, Lu and Qi, Lijian and Lu, Xiuyuan and Wang, Yong and Li, Jidong and Xie, Chunhang and Yuan, Hao and Yan, Zhongluan and others}, - journal = {FRESENIUS ENVIRONMENTAL BULLETIN}, - volume = {30}, - number = {5}, - pages = {5108--5118}, - year = {2021}, - publisher = {PARLAR SCIENTIFIC PUBLICATIONS (PSP) ANGERSTR. 12, 85354 FREISING, GERMANY} -} - -@Article{ridal2001removal, - title = {Removal of Taste and Odour Compounds by Conventional Granular Activated Carbon Filtration}, - author = {Jeff Ridal and Brian Brownlee and Gerry McKenna and Norman Levac}, - year = 2001, - journal = {Water Quality Research Journal}, - publisher = {{IWA} Publishing}, - volume = 36, - pages = {43--54}, - url = {https://doi.org/10.2166/wqrj.2001.003}, - doi = {10.2166/wqrj.2001.003}, - number = 1} - -@article{gillogly1999a, - title = {A simplified method to determine the powdered activated carbon dose required to remove methylisoborneol}, - journal = {Water Science and Technology}, - volume = {40}, - pages = {59-64}, - year = {1999}, - note = {Off-flavours in the Aquatic Environment 1997}, - issn = {0273-1223}, - doi = {10.1016/S0273-1223(99)00538-7}, - url = {https://www.sciencedirect.com/science/article/pii/S0273122399005387}, - author = {Thomas E.T. Gillogly and Vernon L. Snoeyink and Gayle Newcombe and Joseph R. Elarde}, - number = {6} -} - -@Article{greenfield2014the, - title = {The Effects of Three Chemical Algaecides on Cell Numbers and Toxin Content of the Cyanobacteria {{\textit{Microcystis aeruginosa}}} and {{\textit{Anabaenopsis}}} sp.}, - author = {Dianne I. Greenfield and Ashley Duquette and Abby Goodson and Charles J. Keppler and Sarah H. Williams and Larissa M. Brock and Krista D. Stackley and David White and Susan B. Wilde}, - year = 2014, - journal = {Environmental Management}, - publisher = {Springer Science and Business Media {LLC}}, - volume = 54, - pages = {1110--1120}, - url = {https://doi.org/10.1007/s00267-014-0339-2}, - doi = {10.1007/s00267-014-0339-2}, - number = 5} - - -@Article{song2021the, - title = {The Effects of Physical Filtration on the Control of {{\textit{Microcystis aeruginosa}}} at Various Growth Stages}, - author = {Tao Song and Xiangen Xu and Ligang Xu}, - year = 2021, - journal = {Polish Journal of Environmental Studies}, - publisher = {{HARD} Publishing Company}, - volume = 31, - pages = {297--306}, - url = {https://doi.org/10.15244/pjoes/138356}, - doi = {10.15244/pjoes/138356}, - number = 1} - -@Book{xu2020common, - title = {Common phytoplankton species in {Zhuhai Reservoirs}}, - author = {Xu, Y. and Xiao, L. and Yang, Y.}, - year = 2020, - publisher = {Jinan University Press.} -} - -@Article{amrane1994mathematical, - title = {Mathematical model for lactic acid production from lactose in batch culture: Model development and simulation}, - author = {Abdeltif Amrane and Yves Prigent}, - year = 1994, - journal = {Journal of Chemical Technology {AND} Biotechnology}, - publisher = {Wiley}, - volume = 60, - pages = {241--246}, - url = {https://doi.org/10.1002/jctb.280600303}, - doi = {10.1002/jctb.280600303}, - number = 3} - -@Article{lusty2020the, - title = {The Efficacy of Hydrogen Peroxide in Mitigating Cyanobacterial Blooms and Altering Microbial Communities across Four Lakes in {NY}, {USA}}, - author = {Mark W. Lusty and Christopher J. Gobler}, - year = 2020, - journal = {Toxins}, - publisher = {{MDPI} {AG}}, - volume = 12, - pages = 428, - url = {https://doi.org/10.3390/toxins12070428}, - doi = {10.3390/toxins12070428}, - number = 7} - -@TechReport{who2015management, - title = {Management of cyanobacteria in drinking-water supplies}, - author = {WHO, World Health Organization}, - editor = {WHO, World Health Organization}, - year = 2015, - address = {Geneva, Switzerland}, - reference = {"WHO/FWC/WSH/15.03"}, - institution = {{World Health Organization}} -} - -@Article{paerl2019mitigating, - title = {Mitigating eutrophication and toxic cyanobacterial blooms in large lakes:~The evolution of a dual nutrient (N and P) reduction paradigm}, - author = {Hans W. Paerl and Karl E. Havens and Hai Xu and Guangwei Zhu and Mark J. McCarthy and Silvia E. Newell and J. Thad Scott and Nathan S. Hall and Timothy G. Otten and Boqiang Qin}, - year = 2019, - journal = {Hydrobiologia}, - publisher = {Springer Science and Business Media {LLC}}, - volume = 847, - pages = {4359--4375}, - url = {https://doi.org/10.1007/s10750-019-04087-y}, - doi = {10.1007/s10750-019-04087-y}, - number = 21} - -@Article{paerl2011controlling, - title = {Controlling harmful cyanobacterial blooms in a world experiencing anthropogenic and climatic-induced change}, - author = {Hans W. Paerl and Nathan S. Hall and Elizabeth S. Calandrino}, - year = 2011, - journal = {Science of The Total Environment}, - publisher = {Elsevier {BV}}, - volume = 409, - pages = {1739--1745}, - url = {https://doi.org/10.1016/j.scitotenv.2011.02.001}, - doi = {10.1016/j.scitotenv.2011.02.001}, - number = 10} - -@Article{cao2016phosphorus, - title = {Phosphorus mobility among sediments, water and cyanobacteria enhanced by cyanobacteria blooms in eutrophic Lake Dianchi}, - author = {Xin Cao and Yiqi Wang and Jian He and Xingzhang Luo and Zheng Zheng}, - year = 2016, - journal = {Environmental Pollution}, - publisher = {Elsevier {BV}}, - volume = 219, - pages = {580--587}, - url = {https://doi.org/10.1016/j.envpol.2016.06.017}, - doi = {10.1016/j.envpol.2016.06.017} -} - -@Article{barcante2020cyanobacteria, - title = {Cyanobacteria dynamics and phytoplankton species richness as a measure of waterbody recovery: Response to phosphorus removal treatment in a tropical eutrophic reservoir}, - author = {Bruna Bar{\c{c}}ante and Nilo O. Nascimento and Talita F.G. Silva and Leandro A. Reis and Alessandra Giani}, - year = 2020, - journal = {Ecological Indicators}, - publisher = {Elsevier {BV}}, - volume = 117, - pages = 106702, - url = {https://doi.org/10.1016/j.ecolind.2020.106702}, - doi = {10.1016/j.ecolind.2020.106702} -} - -barcante2020cyanobacteria -@Article{hamilton1997waveinduced, - title = {Wave-induced shear stresses, plant nutrients and chlorophyll in seven shallow lakes}, - author = {DAVID HAMILTON and STUART MITCHELL}, - year = 1997, - journal = {Freshwater Biology}, - publisher = {Wiley}, - volume = 38, - pages = {159--168}, - url = {https://doi.org/10.1046/j.1365-2427.1997.00202.x}, - doi = {10.1046/j.1365-2427.1997.00202.x}, - number = 1} - -@Article{lurling2013controlling, - title = {Controlling eutrophication by combined bloom precipitation and sediment phosphorus inactivation}, - author = {Miquel Lürling and Frank van Oosterhout}, - year = 2013, - journal = {Water Research}, - publisher = {Elsevier {BV}}, - volume = 47, - pages = {6527--6537}, - url = {https://doi.org/10.1016/j.watres.2013.08.019}, - doi = {10.1016/j.watres.2013.08.019}, - number = 17} - -@Article{ma2022coagulation, - title = {Coagulation performance of Al/Fe based covalently bonded composite coagulants for algae removal}, - author = {Jiangya Ma and Rui Zhang and Wei Xia and Yanli Kong and Yong Nie and Yahua Zhou and Chi Zhang}, - year = 2022, - journal = {Separation and Purification Technology}, - publisher = {Elsevier {BV}}, - volume = 285, - pages = 120401, - url = {https://doi.org/10.1016/j.seppur.2021.120401}, - doi = {10.1016/j.seppur.2021.120401} -} - -@Article{baron1995copper, - title = {Copper and photosystem {II}: A controversial relationship}, - author = {Matilde Baron and Juan B. Arellano and Julio Lopez Gorge}, - year = 1995, - journal = {Physiologia Plantarum}, - publisher = {Wiley}, - volume = 94, - pages = {174--180}, - url = {https://doi.org/10.1111/j.1399-3054.1995.tb00799.x}, - doi = {10.1111/j.1399-3054.1995.tb00799.x}, - number = 1} - -@Article{christophoridis2006conditions, - title = {Conditions Affecting the Release of Phosphorus from Surface Lake Sediments}, - author = {Christophoros Christophoridis and Konstantinos Fytianos}, - year = 2006, - journal = {Journal of Environmental Quality}, - publisher = {Wiley}, - volume = 35, - pages = {1181--1192}, - url = {https://doi.org/10.2134/jeq2005.0213}, - doi = {10.2134/jeq2005.0213}, - number = 4} - -@Article{crafton2018in, - title = {{{\textit{In situ}}} field trial to evaluate the efficacy of Cutrine Ultra to manage a cyanobacteria population in a drinking water source}, - author = {Elizabeth A. Crafton and Jessica Glowczewski and Donald W. Ott and Teresa J. Cutright}, - year = 2018, - journal = {Environmental Science: Water Research {\&} Technology}, - publisher = {Royal Society of Chemistry ({RSC})}, - volume = 4, - pages = {863--871}, - url = {https://doi.org/10.1039/c8ew00124c}, - doi = {10.1039/c8ew00124c}, - number = 6} - -@Article{drabkova2007selective, - title = {Selective effects of {H2O2} on cyanobacterial photosynthesis}, - author = {M. Dr{\'{a}}bkov{\'{a}} and H. C. P. Matthijs and W. Admiraal and B. Mar{\v{s}}{\'{a}}lek}, - year = 2007, - journal = {Photosynthetica}, - publisher = {Institute of Experimental Botany}, - volume = 45, - pages = {363--369}, - url = {https://doi.org/10.1007/s11099-007-0062-9}, - doi = {10.1007/s11099-007-0062-9}, - number = 3} - -@Article{jeffrey1975new, - title = {New spectrophotometric equations for determining chlorophylls a, b, c1 and c2 in higher plants, algae and natural phytoplankton}, - author = {S.W. Jeffrey and G.F. Humphrey}, - year = 1975, - journal = {Biochemie und Physiologie der Pflanzen}, - publisher = {Elsevier {BV}}, - volume = 167, - pages = {191--194}, - url = {https://doi.org/10.1016/s0015-3796%2817%2930778-3}, - doi = {10.1016/s0015-3796(17)30778-3}, - number = 2} - -@Article{knocke1991removal, - title = {Removal of Soluble Manganese by Oxide-coated Filter Media: Sorption Rate and Removal Mechanism Issues}, - author = {William R. Knocke and Suzanne C. Occiano and Robert Hungate}, - year = 1991, - journal = {Journal - American Water Works Association}, - publisher = {Wiley}, - volume = 83, - pages = {64--69}, - url = {https://doi.org/10.1002/j.1551-8833.1991.tb07201.x}, - doi = {10.1002/j.1551-8833.1991.tb07201.x}, - number = 8} - -@Article{li2022response, - title = {Response of cyanobacterial bloom risk to nitrogen and phosphorus concentrations in large shallow lakes determined through geographical detector: A case study of Taihu Lake, China}, - author = {Shan Li and Chang Liu and Ping Sun and Tianhua Ni}, - year = 2022, - journal = {Science of The Total Environment}, - publisher = {Elsevier {BV}}, - volume = 816, - pages = 151617, - url = {https://doi.org/10.1016/j.scitotenv.2021.151617}, - doi = {10.1016/j.scitotenv.2021.151617} -} - -@Article{liu2021insight, - title = {Insight into cyanobacterial preservation in shallow marine environments from experimental simulation of cyanobacteria-clay co-aggregation}, - author = {Hongchang Liu and Peng Yuan and Dong Liu and Weiwei Zhang and Qian Tian and Hongling Bu and Yanfu Wei and Jinlan Xia and Yinchu Wang and Junming Zhou}, - year = 2021, - journal = {Chemical Geology}, - publisher = {Elsevier {BV}}, - volume = 577, - pages = 120285, - url = {https://doi.org/10.1016/j.chemgeo.2021.120285}, - doi = {10.1016/j.chemgeo.2021.120285} -} - -@Article{meis2013assessing, - title = {Assessing the mode of action of Phoslock{\textregistered} in the control of phosphorus release from the bed sediments in a shallow lake (Loch Flemington, {UK})}, - author = {Sebastian Meis and Bryan M. Spears and Stephen C. Maberly and Rupert G. Perkins}, - year = 2013, - journal = {Water Research}, - publisher = {Elsevier {BV}}, - volume = 47, - pages = {4460--4473}, - url = {https://doi.org/10.1016/j.watres.2013.05.017}, - doi = {10.1016/j.watres.2013.05.017}, - number = 13} - -@Article{miao2006influence, - title = {Influence of sediment redox conditions on release/solubility of metals and nutrients in a Louisiana Mississippi River deltaic plain freshwater lake}, - author = {Shenyu Miao and R.D. DeLaune and A. Jugsujinda}, - year = 2006, - journal = {Science of The Total Environment}, - publisher = {Elsevier {BV}}, - volume = 371, - pages = {334--343}, - url = {https://doi.org/10.1016/j.scitotenv.2006.07.027}, - doi = {10.1016/j.scitotenv.2006.07.027}, - number = {1-3} -} - -@Article{qin2004dynamics, - title = {Dynamics of sediment resuspension and the conceptual schema of nutrient release in the large shallow Lake Taihu, China}, - author = {Boqiang Qin and Weiping Hu and Guang Gao and Liancong Luo and Jinshan Zhang}, - year = 2004, - journal = {Chinese Science Bulletin}, - publisher = {Springer Science and Business Media {LLC}}, - volume = 49, - pages = {54--64}, - url = {https://doi.org/10.1007/bf02901743}, - doi = {10.1007/bf02901743}, - number = 1} - -@Article{reckhow1991oxidation, - title = {Oxidation Of Iron And Manganese By Ozone}, - author = {David A. Reckhow and William R. Knocke and Maureen J. Kearney and Cynthia A. Parks}, - year = 1991, - journal = {Ozone: Science {\&} Engineering}, - publisher = {Informa {UK} Limited}, - volume = 13, - pages = {675--695}, - url = {https://doi.org/10.1080/01919512.1991.10555708}, - doi = {10.1080/01919512.1991.10555708}, - number = 6} - -@Article{reitzel2013phosphate, - title = {Phosphate adsorption by lanthanum modified bentonite clay in fresh and brackish water}, - author = {Kasper Reitzel and Frede {\O}. Andersen and Sara Egemose and Henning S. Jensen}, - year = 2013, - journal = {Water Research}, - publisher = {Elsevier {BV}}, - volume = 47, - pages = {2787--2796}, - url = {https://doi.org/10.1016/j.watres.2013.02.051}, - doi = {10.1016/j.watres.2013.02.051}, - number = 8} - -@Article{sndergaard2003role, - title = {Role of sediment and internal loading of phosphorus in shallow lakes}, - author = {Martin S{\o}ndergaard and Jens Peder Jensen and Erik Jeppesen}, - year = 2003, - journal = {Hydrobiologia}, - publisher = {Springer Science and Business Media {LLC}}, - volume = {506-509}, - pages = {135--145}, - url = {https://doi.org/10.1023/b%3Ahydr.0000008611.12704.dd}, - doi = {10.1023/b:hydr.0000008611.12704.dd}, - number = {1-3} -} - -@Article{sun2006experimental, - title = {Experimental study on phosphorus release from sediments of shallow lake in wave flume}, - author = {Xiaojing Sun and Guangwei Zhu and Liancong Luo and Boqiang Qin}, - year = 2006, - journal = {Science in China Series D}, - publisher = {Springer Science and Business Media {LLC}}, - volume = 49, - pages = {92--101}, - url = {https://doi.org/10.1007/s11430-006-8109-5}, - doi = {10.1007/s11430-006-8109-5}, - number = {S1} -} - -@Article{you2007effects, - title = {Effects of hydrodynamics processes on phosphorus fluxes from sediment in large, shallow Taihu Lake}, - author = {Bensheng You and Jicheng Zhong and Chengxin Fan and Tongcheng Wang and Lu Zhang and Shiming Ding}, - year = 2007, - journal = {Journal of Environmental Sciences}, - publisher = {Elsevier {BV}}, - volume = 19, - pages = {1055--1060}, - url = {https://doi.org/10.1016/s1001-0742%2807%2960172-7}, - doi = {10.1016/s1001-0742(07)60172-7}, - number = 9} - -@Article{xie2021deciphering, - title = {Deciphering and engineering high-light tolerant cyanobacteria for efficient photosynthetic cell factories}, - author = {Yaru Xie and Lei Chen and Tao Sun and Weiwen Zhang}, - year = 2021, - journal = {Chinese Journal of Chemical Engineering}, - publisher = {Elsevier {BV}}, - volume = 30, - pages = {82--91}, - url = {https://doi.org/10.1016/j.cjche.2020.11.002}, - doi = {10.1016/j.cjche.2020.11.002} -} - -@Manual{clarke2015primer, - title = {Primer v7: User Manual/Tutorial}, - author = {Clarke, K.R. and Gorley, R.N.}, - year = 2015, - publisher = {{PRIMER-e: Plymouth}} -} - -@Article{he2016toxic, - title = {Toxic cyanobacteria and drinking water: Impacts, detection, and treatment}, - author = {Xuexiang He and Yen-Ling Liu and Amanda Conklin and Judy Westrick and Linda K. Weavers and Dionysios D. Dionysiou and John J. Lenhart and Paula J. Mouser and David Szlag and Harold W. Walker}, - year = 2016, - journal = {Harmful Algae}, - publisher = {Elsevier {BV}}, - volume = 54, - pages = {174--193}, - url = {https://doi.org/10.1016/j.hal.2016.01.001}, - doi = {10.1016/j.hal.2016.01.001} -} - -@Article{berg2004sediment, - title = {Sediment capping in eutrophic lakes {\textendash} efficiency of undisturbed calcite barriers to immobilize phosphorus}, - author = {Ute Berg and Thomas Neumann and Dietfried Donnert and Rolf Nüesch and Doris Stüben}, - year = 2004, - journal = {Applied Geochemistry}, - publisher = {Elsevier {BV}}, - volume = 19, - pages = {1759--1771}, - url = {https://doi.org/10.1016/j.apgeochem.2004.05.004}, - doi = {10.1016/j.apgeochem.2004.05.004}, - number = 11} - -@Article{blanc2018the, - title = {The early history of manganese and the recognition of its neurotoxicity, 1837{\textendash}1936}, - author = {Paul D. Blanc}, - year = 2018, - journal = {{NeuroToxicology}}, - publisher = {Elsevier {BV}}, - volume = 64, - pages = {5--11}, - url = {https://doi.org/10.1016/j.neuro.2017.04.006}, - doi = {10.1016/j.neuro.2017.04.006} -} - -@Article{bormans2015controlling, - title = {Controlling internal phosphorus loading in lakes by physical methods to reduce cyanobacterial blooms: a review}, - author = {Myriam Bormans and Blahoslav Mar{\v{s}}{\'{a}}lek and Daniel Jan{\v{c}}ula}, - year = 2015, - journal = {Aquatic Ecology}, - publisher = {Springer Science and Business Media {LLC}}, - volume = 50, - pages = {407--422}, - url = {https://doi.org/10.1007/s10452-015-9564-x}, - doi = {10.1007/s10452-015-9564-x}, - number = 3} - -@Article{cerrato2011application, - title = {Application of {XPS} and Solution Chemistry Analyses to Investigate Soluble Manganese Removal by {MnO}$_{x}$(s)-Coated Media}, - author = {Jos{\'{e}} M. Cerrato and William R. Knocke and Michael F. Hochella and Andrea M. Dietrich and Andrew Jones and Thomas F. Cromer}, - year = 2011, - journal = {Environmental Science {\&} Technology}, - publisher = {American Chemical Society ({ACS})}, - volume = 45, - pages = {10068--10074}, - url = {https://doi.org/10.1021/es203262n}, - doi = {10.1021/es203262n}, - number = 23} - -@Article{crafton2018iin, - title = {{{\textit{In situ}}} field trial to evaluate the efficacy of Cutrine Ultra to manage a cyanobacteria population in a drinking water source}, - author = {Elizabeth A. Crafton and Jessica Glowczewski and Donald W. Ott and Teresa J. Cutright}, - year = 2018, - journal = {Environmental Science: Water Research {\&} Technology}, - publisher = {Royal Society of Chemistry ({RSC})}, - volume = 4, - pages = {863--871}, - url = {https://doi.org/10.1039/c8ew00124c}, - doi = {10.1039/c8ew00124c}, - number = 6} - -@Article{gregory2001ozonation, - title = {Ozonation Of Dissolved Manganese In The Presence Of Natural Organic Matter}, - author = {Dean Gregory and Kenneth H. Carlson}, - year = 2001, - journal = {Ozone: Science {\&} Engineering}, - publisher = {Informa {UK} Limited}, - volume = 23, - pages = {149--159}, - url = {https://doi.org/10.1080/01919510108961997}, - doi = {10.1080/01919510108961997}, - number = 2} - -@Article{han2013the, - title = {The effect of alum coagulation for in-lake treatment of toxic Microcystis and other cyanobacteria related organisms in microcosm experiments}, - author = {Jisun Han and Bong-seok Jeon and Noriko Futatsugi and Ho-Dong Park}, - year = 2013, - journal = {Ecotoxicology and Environmental Safety}, - publisher = {Elsevier {BV}}, - volume = 96, - pages = {17--23}, - url = {https://doi.org/10.1016/j.ecoenv.2013.06.008}, - doi = {10.1016/j.ecoenv.2013.06.008} -} - -@Article{hu2021environmental, - title = {Environmental factors associated with cyanobacterial assemblages in a mesotrophic subtropical plateau lake: A focus on bloom toxicity}, - author = {Lili Hu and Kun Shan and Licheng Huang and Yuanrui Li and Lei Zhao and Qichao Zhou and Lirong Song}, - year = 2021, - journal = {Science of The Total Environment}, - publisher = {Elsevier {BV}}, - volume = 777, - pages = 146052, - url = {https://doi.org/10.1016/j.scitotenv.2021.146052}, - doi = {10.1016/j.scitotenv.2021.146052} -} - -@Article{huser2012variability, - title = {Variability in phosphorus binding by aluminum in alum treated lakes explained by lake morphology and aluminum dose}, - author = {Brian J. Huser}, - year = 2012, - journal = {Water Research}, - publisher = {Elsevier {BV}}, - volume = 46, - pages = {4697--4704}, - url = {https://doi.org/10.1016/j.watres.2012.06.005}, - doi = {10.1016/j.watres.2012.06.005}, - number = 15} - -@Article{jancula2012seven, - title = {Seven years from the first application of polyaluminium chloride in the Czech Republic {\textendash} effects on phytoplankton communities in three water bodies}, - author = {Daniel Jan{\v{c}}ula and Blahoslav Mar{\v{s}}{\'{a}}lek}, - year = 2012, - journal = {Chemistry and Ecology}, - publisher = {Informa {UK} Limited}, - volume = 28, - pages = {535--544}, - url = {https://doi.org/10.1080/02757540.2012.696616}, - doi = {10.1080/02757540.2012.696616}, - number = 6} - -@Article{kibuye2021a, - title = {A critical review on operation and performance of source water control strategies for cyanobacterial blooms: Part I-chemical control methods}, - author = {Faith A. Kibuye and Arash Zamyadi and Eric C. Wert}, - year = 2021, - journal = {Harmful Algae}, - publisher = {Elsevier {BV}}, - volume = 109, - pages = 102099, - url = {https://doi.org/10.1016/j.hal.2021.102099}, - doi = {10.1016/j.hal.2021.102099} -} - -@Article{knocke1988soluble, - title = {Soluble Manganese Removal on Oxide-Coated Filter Media}, - author = {William R. Knocke and Jeffrey R. Hamon and Carolyn P. Thompson}, - year = 1988, - journal = {Journal - American Water Works Association}, - publisher = {Wiley}, - volume = 80, - pages = {65--70}, - url = {https://doi.org/10.1002/j.1551-8833.1988.tb03151.x}, - doi = {10.1002/j.1551-8833.1988.tb03151.x}, - number = 12} - -@Article{knocke1991kinetics, - title = {Kinetics of Manganese and Iron Oxidation by Potassium Permanganate and Chlorine Dioxide}, - author = {William R. Knocke and John E. Van Benschoten and Maureen J. Kearney and Andrew W. Soborski and David A. Reckhow}, - year = 1991, - journal = {Journal - American Water Works Association}, - publisher = {Wiley}, - volume = 83, - pages = {80--87}, - url = {https://doi.org/10.1002/j.1551-8833.1991.tb07167.x}, - doi = {10.1002/j.1551-8833.1991.tb07167.x}, - number = 6} - -@Article{li2016investigation, - title = {Investigation on the efficiency of a silicone antifouling coating in controlling the adhesion and germination of Ulva prolifera micro-propagules on rafts}, - author = {Jing Li and Lei Sun and ZhiMing Yu and XiuXian Song}, - year = 2016, - journal = {Science China Earth Sciences}, - publisher = {Springer Science and Business Media {LLC}}, - volume = 60, - pages = {391--396}, - url = {https://doi.org/10.1007/s11430-016-0018-x}, - doi = {10.1007/s11430-016-0018-x}, - number = 2} - -@Article{lurling2014humic, - title = {Humic substances interfere with phosphate removal by lanthanum modified clay in controlling eutrophication}, - author = {Miquel Lürling and Guido Waajen and Frank van Oosterhout}, - year = 2014, - journal = {Water Research}, - publisher = {Elsevier {BV}}, - volume = 54, - pages = {78--88}, - url = {https://doi.org/10.1016/j.watres.2014.01.059}, - doi = {10.1016/j.watres.2014.01.059} -} - -@Article{moore2009newman, - title = {Newman Lake restoration: A case study. Part {II}. Microfloc alum injection}, - author = {Barry C. Moore and David Christensen and Ann C. Richter}, - year = 2009, - journal = {Lake and Reservoir Management}, - publisher = {Informa {UK} Limited}, - volume = 25, - pages = {351--363}, - url = {https://doi.org/10.1080/07438140903172923}, - doi = {10.1080/07438140903172923}, - number = 4} - -@Article{pinto2003heavy, - title = {{HEAVY} {METAL}-{INDUCED} {OXIDATIVE} {STRESS} {IN} {ALGAE}1}, - author = {Ernani Pinto and Teresa C. S. Sigaud-kutner and Maria A. S. Leitao and Oswaldo K. Okamoto and David Morse and Pio Colepicolo}, - year = 2003, - journal = {Journal of Phycology}, - publisher = {Wiley}, - volume = 39, - pages = {1008--1018}, - url = {https://doi.org/10.1111/j.0022-3646.2003.02-193.x}, - doi = {10.1111/j.0022-3646.2003.02-193.x}, - number = 6} - -@Article{qin2006the, - title = {The nutrient forms, cycling and exchange flux in the sediment and overlying water system in lakes from the middle and lower reaches of Yangtze River}, - author = {Boqiang Qin and Guangwei Zhu}, - year = 2006, - journal = {Science in China Series D}, - publisher = {Springer Science and Business Media {LLC}}, - volume = 49, - pages = {1--13}, - url = {https://doi.org/10.1007/s11430-006-8101-0}, - doi = {10.1007/s11430-006-8101-0}, - number = {S1} -} - -@Article{shao2009allelopathic, - title = {Allelopathic mechanism of pyrogallol to Microcystis aeruginosa {PCC}7806 (Cyanobacteria): From views of gene expression and antioxidant system}, - author = {Jihai Shao and Zhongxing Wu and Gongliang Yu and Xin Peng and Renhui Li}, - year = 2009, - journal = {Chemosphere}, - publisher = {Elsevier {BV}}, - volume = 75, - pages = {924--928}, - url = {https://doi.org/10.1016/j.chemosphere.2009.01.021}, - doi = {10.1016/j.chemosphere.2009.01.021}, - number = 7} - -@Article{tobiason2016manganese, - title = {Manganese Removal from Drinking Water Sources}, - author = {John E. Tobiason and Arianne Bazilio and Joseph Goodwill and Xuyen Mai and Chuyen Nguyen}, - year = 2016, - journal = {Current Pollution Reports}, - publisher = {Springer Science and Business Media {LLC}}, - volume = 2, - pages = {168--177}, - url = {https://doi.org/10.1007/s40726-016-0036-2}, - doi = {10.1007/s40726-016-0036-2}, - number = 3} - -@Article{waal2009the, - title = {The ecological stoichiometry of toxins produced by harmful cyanobacteria: an experimental test of the carbon-nutrient balance hypothesis}, - author = {Dedmer B. Van de Waal and Jolanda M. H. Verspagen and Miquel Lürling and Ellen Van Donk and Petra M. Visser and Jef Huisman}, - year = 2009, - journal = {Ecology Letters}, - publisher = {Wiley}, - volume = 12, - pages = {1326--1335}, - url = {https://doi.org/10.1111/j.1461-0248.2009.01383.x}, - doi = {10.1111/j.1461-0248.2009.01383.x}, - number = 12} - -@Article{wang2021twoyear, - title = {Two-year moving aeration controls cyanobacterial blooms in an extremely eutrophic shallow pond: Variation in phytoplankton community and Microcystis colony size}, - author = {Yiyao Wang and Qiang He and Hong Tang and Yongwang Han and Ming Li}, - year = 2021, - journal = {Journal of Water Process Engineering}, - publisher = {Elsevier {BV}}, - volume = 42, - pages = 102192, - url = {https://doi.org/10.1016/j.jwpe.2021.102192}, - doi = {10.1016/j.jwpe.2021.102192} -} - -@Article{willis2016understanding, - title = {Understanding Fate and Effects of Copper Pesticides in Aquatic Systems}, - author = {Ben E. Willis and West M. Bishop}, - year = 2016, - journal = {Journal of Geoscience and Environment Protection}, - publisher = {Scientific Research Publishing, Inc.}, - volume = 04, - pages = {37--42}, - url = {https://doi.org/10.4236/gep.2016.45004}, - doi = {10.4236/gep.2016.45004}, - number = 05} - -@Article{xenopoulos1997effect, - title = {Effect of Acute Exposure to Hydrogen Peroxide on the Production of Phytoplankton and Bacterioplankton in a Mesohumic Lake}, - author = {Marguerite A. Xenopoulos and David F. Bird}, - year = 1997, - journal = {Photochemistry and Photobiology}, - publisher = {Wiley}, - volume = 66, - pages = {471--478}, - url = {https://doi.org/10.1111/j.1751-1097.1997.tb03175.x}, - doi = {10.1111/j.1751-1097.1997.tb03175.x}, - number = 4} - -@Article{xu2021rising, - title = {Rising temperature more strongly promotes low-abundance Paramecium to remove Microcystis and degrade microcystins}, - author = {Wenjie Xu and Xianxian Li and Yapeng Li and Yunfei Sun and Lu Zhang and Yuan Huang and Zhou Yang}, - year = 2021, - journal = {Environmental Pollution}, - publisher = {Elsevier {BV}}, - volume = 291, - pages = 118143, - url = {https://doi.org/10.1016/j.envpol.2021.118143}, - doi = {10.1016/j.envpol.2021.118143} -} - -@Article{yin2016influence, - title = {Influence of sediment resuspension on the efficacy of geoengineering materials in the control of internal phosphorous loading from shallow eutrophic lakes}, - author = {Hongbin Yin and Ming Kong and Meixiang Han and Chengxin Fan}, - year = 2016, - journal = {Environmental Pollution}, - publisher = {Elsevier {BV}}, - volume = 219, - pages = {568--579}, - url = {https://doi.org/10.1016/j.envpol.2016.06.011}, - doi = {10.1016/j.envpol.2016.06.011} -} - -@Article{zhang2010impact, - title = {Impact of different benthic animals on phosphorus dynamics across the sediment-water interface}, - author = {Lei Zhang and Xiaozhi Gu and Chengxin Fan and Jingge Shang and Qiushi Shen and Zhaode Wang and Ji Shen}, - year = 2010, - journal = {Journal of Environmental Sciences}, - publisher = {Elsevier {BV}}, - volume = 22, - pages = {1674--1682}, - url = {https://doi.org/10.1016/s1001-0742%2809%2960305-3}, - doi = {10.1016/s1001-0742(09)60305-3}, - number = 11} - -@Article{zhou2018growth, - title = {Growth suppression and apoptosis-like cell death in Microcystis aeruginosa by H2O2: A new insight into extracellular and intracellular damage pathways}, - author = {Tingru Zhou and Jie Zheng and Huansheng Cao and Xuejian Wang and Kai Lou and Xihui Zhang and Yi Tao}, - year = 2018, - journal = {Chemosphere}, - publisher = {Elsevier {BV}}, - volume = 211, - pages = {1098--1108}, - url = {https://doi.org/10.1016/j.chemosphere.2018.08.042}, - doi = {10.1016/j.chemosphere.2018.08.042} -} - -@Article{zhu2005direct, - title = {Direct evidence of phosphorus outbreak release from sediment to overlying water in a large shallow lake caused by strong wind wave disturbance}, - author = {Guangwei Zhu and Boqiang Qin and Guang Gao}, - year = 2005, - journal = {Chinese Science Bulletin}, - publisher = {Springer Science and Business Media {LLC}}, - volume = 50, - pages = {577--582}, - url = {https://doi.org/10.1007/bf02897483}, - doi = {10.1007/bf02897483}, - number = 6} - -@Article{allen2022cause, - title = {Cause of the 2020 surge in atmospheric methane clarified}, - author = {George H. Allen}, - year = 2022, - journal = {Nature}, - publisher = {Springer Science and Business Media {LLC}}, - volume = 612, - pages = {413--414}, - url = {https://doi.org/10.1038/d41586-022-04352-6}, - doi = {10.1038/d41586-022-04352-6}, - number = 7940} - -@Article{yu2017mitigation, - title = {Mitigation of harmful algal blooms using modified clays: Theory, mechanisms, and applications}, - author = {Zhiming Yu and Xiuxian Song and Xihua Cao and Yang Liu}, - year = 2017, - journal = {Harmful Algae}, - publisher = {Elsevier {BV}}, - volume = 69, - pages = {48--64}, - url = {https://doi.org/10.1016/j.hal.2017.09.004}, - doi = {10.1016/j.hal.2017.09.004} -} - -@Article{divakaran2002flocculation, - author = {Ravi Divakaran and V.N. Sivasankara Pillai}, - year = 2002, - title = {Flocculation of algae using chitosan}, - journal = {Journal of Applied Phycology}, - publisher = {Springer Science and Business Media {LLC}}, - volume = 14, - pages = {419--422}, - url = {https://doi.org/10.1023/a%3A1022137023257}, - doi = {10.1023/a:1022137023257}, - number = 5 -} - -@Article{li2013the, - title = {The effectiveness of five natural products against three species of harmful algae}, - author = {Yun-Hui Li and Ting Wu and Wei-Dong Yang and Hong-Ye Li and Jie-Sheng Liu}, - year = 2013, - journal = {Water and Environment Journal}, - publisher = {Wiley}, - volume = 28, - pages = {270--276}, - url = {https://doi.org/10.1111/wej.12033}, - doi = {10.1111/wej.12033}, - number = 2} - -@Article{ma2002effectiveness, - title = {Effectiveness and mechanism of potassium ferrate({VI}) preoxidation for algae removal by coagulation}, - author = {Jun Ma and Wei Liu}, - year = 2002, - journal = {Water Research}, - publisher = {Elsevier {BV}}, - volume = 36, - pages = {871--878}, - url = {https://doi.org/10.1016/s0043-1354%2801%2900282-2}, - doi = {10.1016/s0043-1354(01)00282-2}, - number = 4} - -@Article{zhou2023a, - title = {A new method for evaluating nuisance of odorants by chemical and sensory analyses and the assessing of masked odors by olfactometry}, - author = {Yubin Zhou and Tadeo G. Vitko and I.H. (Mel) Suffet}, - year = 2023, - journal = {Science of The Total Environment}, - publisher = {Elsevier {BV}}, - volume = 862, - pages = 160905, - url = {https://doi.org/10.1016/j.scitotenv.2022.160905}, - doi = {10.1016/j.scitotenv.2022.160905} -} - -@Book{kim2006mitigation, - title = {Mitigation and Controls of HABs}, - author = {Kim, H. G.}, - year = 2006, - booktitle = {Ecology of Harmful Algae}, - publisher = {Springer Berlin Heidelberg}, - pages = {327--338}, - url = {https://doi.org/10.1007/978-3-540-32210-8_25}, - address = {Berlin, Heidelberg}, - isbn = {978-3-540-32210-8}, - doi = {10.1007/978-3-540-32210-8_25} -} - -@Article{beaulieu2005using, - title = {Using clay to control harmful algal blooms: deposition and resuspension of clay/algal flocs}, - author = {Stace E. Beaulieu and Mario R. Sengco and Donald M. Anderson}, - year = 2005, - journal = {Harmful Algae}, - publisher = {Elsevier {BV}}, - volume = 4, - pages = {123--138}, - url = {https://doi.org/10.1016/j.hal.2003.12.008}, - doi = {10.1016/j.hal.2003.12.008}, - number = 1} - -@Article{park2017recent, - title = {Recent advances in ultrasonic treatment: Challenges and field applications for controlling harmful algal blooms ({HABs})}, - author = {Jungsu Park and Jared Church and Younggyu Son and Keug-Tae Kim and Woo Hyoung Lee}, - year = 2017, - journal = {Ultrasonics Sonochemistry}, - publisher = {Elsevier {BV}}, - volume = 38, - pages = {326--334}, - url = {https://doi.org/10.1016/j.ultsonch.2017.03.003}, - doi = {10.1016/j.ultsonch.2017.03.003} -} - -@Article{gallardorodrguez2018a, - title = {A critical review on control methods for harmful algal blooms}, - author = {Juan J. Gallardo-Rodr{\'{\i}}guez and Allisson Astuya-Villal{\'{o}}n and Alejandra Llanos-Rivera and Veronica Avello-Fontalba and Viviana Ulloa-Jofr{\'{e}}}, - year = 2018, - journal = {Reviews in Aquaculture}, - publisher = {Wiley}, - volume = 11, - pages = {661--684}, - url = {https://doi.org/10.1111/raq.12251}, - doi = {10.1111/raq.12251}, - number = 3} - -@Article{bayoudh2009assessing, - title = {Assessing bacterial adhesion using {DLVO} and {XDLVO} theories and the jet impingement technique}, - author = {Sonia Bayoudh and Ali Othmane and Laurence Mora and Hafedh Ben Ouada}, - year = 2009, - journal = {Colloids and Surfaces B: Biointerfaces}, - publisher = {Elsevier {BV}}, - volume = 73, - pages = {1--9}, - url = {https://doi.org/10.1016/j.colsurfb.2009.04.030}, - doi = {10.1016/j.colsurfb.2009.04.030}, - number = 1} - -@Article{lewis2003toxicity, - title = {Toxicity of clay flocculation of the toxic dinoflagellate, Karenia brevis, to estuarine invertebrates and fish}, - author = {Michael A Lewis and Darrin D Dantin and Calvin C Walker and Janis C Kurtz and Richard M Greene}, - year = 2003, - journal = {Harmful Algae}, - publisher = {Elsevier {BV}}, - volume = 2, - pages = {235--246}, - url = {https://doi.org/10.1016/s1568-9883%2803%2900041-6}, - doi = {10.1016/s1568-9883(03)00041-6}, - number = 4} - -@Article{hagstrom2010potential, - title = {Potential Methods for Managing {{\textit{Prymnesium parvum}}} Blooms and Toxicity, With Emphasis on Clay and Barley Straw: A Review}, - author = {Johannes A. Hagström and Mario R. Sengco and Tracy A. Villareal}, - year = 2010, - journal = {{JAWRA} Journal of the American Water Resources Association}, - publisher = {Wiley}, - volume = 46, - pages = {187--198}, - url = {https://doi.org/10.1111/j.1752-1688.2009.00402.x}, - doi = {10.1111/j.1752-1688.2009.00402.x}, - number = 1} - -@Article{pan2006removal, - title = {Removal of cyanobacterial blooms in Taihu Lake using local soils. I. Equilibrium and kinetic screening on the flocculation of Microcystis aeruginosa using commercially available clays and minerals}, - author = {Gang Pan and Ming-Ming Zhang and Hao Chen and Hua Zou and Hai Yan}, - year = 2006, - journal = {Environmental Pollution}, - publisher = {Elsevier {BV}}, - volume = 141, - pages = {195--200}, - url = {https://doi.org/10.1016/j.envpol.2005.08.041}, - doi = {10.1016/j.envpol.2005.08.041}, - number = 2} - -@Article{zou2006removal, - title = {Removal of cyanobacterial blooms in Taihu Lake using local soils {II}. Effective removal of Microcystis aeruginosa using local soils and sediments modified by chitosan}, - author = {Hua Zou and Gang Pan and Hao Chen and Xianzheng Yuan}, - year = 2006, - journal = {Environmental Pollution}, - publisher = {Elsevier {BV}}, - volume = 141, - pages = {201--205}, - url = {https://doi.org/10.1016/j.envpol.2005.08.042}, - doi = {10.1016/j.envpol.2005.08.042}, - number = 2} - -@Article{han2001a, - title = {A theoretical consideration of algae removal with clays}, - author = {Moo Young Han and Wontae Kim}, - year = 2001, - journal = {Microchemical Journal}, - publisher = {Elsevier {BV}}, - volume = 68, - pages = {157--161}, - url = {https://doi.org/10.1016/s0026-265x%2800%2900142-9}, - doi = {10.1016/s0026-265x(00)00142-9}, - number = {2-3} -} - -@Article{yin2022performance, - title = {Performance evaluation of different chitosan-clay composite materials for efficient harvesting of Chlorella vulgaris and impacts on downstream bioproduct processing and water reusability}, - author = {Zhihong Yin and Shuangxi Li and Dan Hu and Zhuo Li and Ruoyu Chu and Chenchen Liu and Xinzhu Li and Jiangjun Hu and Liandong Zhu}, - year = 2022, - journal = {Chemical Engineering Journal}, - publisher = {Elsevier {BV}}, - volume = 430, - pages = 132892, - url = {https://doi.org/10.1016/j.cej.2021.132892}, - doi = {10.1016/j.cej.2021.132892} -} - -@Article{drummond2022temporal, - title = {Temporal and spatial variation in the efficiency of a Floc \& Sink technique for controlling cyanobacterial blooms in a tropical reservoir}, - author = {Erick Drummond and Vivian Balthazar Gon{\c{c}}alves Leite and Nat{\'{a}}lia Pessoa Noyma and Leonardo de Magalh{\~{a}}es and Caio Graco-Roza and Vera L{\'{u}}cia Huszar and Miquel Lürling and Marcelo Manzi Marinho}, - year = 2022, - journal = {Harmful Algae}, - publisher = {Elsevier {BV}}, - volume = 117, - pages = 102262, - url = {https://doi.org/10.1016/j.hal.2022.102262}, - doi = {10.1016/j.hal.2022.102262} -} - -@Article{sengco2004controlling, - title = {Controlling Harmful Algal Blooms Through Clay Flocculation1}, - author = {MARIO R. SENGCO and DONALD M. ANDERSON}, - year = 2004, - journal = {The Journal of Eukaryotic Microbiology}, - publisher = {Wiley}, - volume = 51, - pages = {169--172}, - url = {https://doi.org/10.1111/j.1550-7408.2004.tb00541.x}, - doi = {10.1111/j.1550-7408.2004.tb00541.x}, - number = 2} - -@Article{jin2017a, - title = {A promising application of chitosan quaternary ammonium salt to removal of Microcystis aeruginosa cells from drinking water}, - author = {Yan Jin and Haiyan Pei and Wenrong Hu and Yaowen Zhu and Hangzhou Xu and Chunxia Ma and Jiongming Sun and Hongmin Li}, - year = 2017, - journal = {Science of The Total Environment}, - publisher = {Elsevier {BV}}, - volume = 583, - pages = {496--504}, - url = {https://doi.org/10.1016/j.scitotenv.2017.01.104}, - doi = {10.1016/j.scitotenv.2017.01.104} -} - -@Article{yin2021application, - title = {Application of chitosan-based flocculants to harvest microalgal biomass for biofuel production: A review}, - author = {Zhihong Yin and Ruoyu Chu and Liandong Zhu and Shuangxi Li and Fan Mo and Dan Hu and Chenchen Liu}, - year = 2021, - journal = {Renewable and Sustainable Energy Reviews}, - publisher = {Elsevier {BV}}, - volume = 145, - pages = 111159, - url = {https://doi.org/10.1016/j.rser.2021.111159}, - doi = {10.1016/j.rser.2021.111159} -} - -@Article{imai2021harmful, - title = {Harmful algal blooms and environmentally friendly control strategies in Japan}, - author = {Ichiro Imai and Nobuharu Inaba and Keigo Yamamoto}, - year = 2021, - journal = {Fisheries Science}, - publisher = {Springer Science and Business Media {LLC}}, - volume = 87, - pages = {437--464}, - url = {https://doi.org/10.1007/s12562-021-01524-7}, - doi = {10.1007/s12562-021-01524-7}, - number = 4} - -@Article{yu1999clay, - title = {Clay surface modification and its coagulation of red tide organisms}, - author = {Zhiming Yu and Xiaoxia Sun and Xiuxian Song and Bo Zhang}, - year = 1999, - journal = {Chinese Science Bulletin}, - publisher = {Springer Science and Business Media {LLC}}, - volume = 44, - pages = {617--620}, - url = {https://doi.org/10.1007/bf03182721}, - doi = {10.1007/bf03182721}, - number = 7} - -@Article{lee2008field, - title = {Field experiments on mitigation of harmful algal blooms using a Sophorolipid{\textemdash}Yellow clay mixture and effects on marine plankton}, - author = {Young-Ju Lee and Joong-Ki Choi and Eun-Ki Kim and Seok-Hyun Youn and Eun-Jin Yang}, - year = 2008, - journal = {Harmful Algae}, - publisher = {Elsevier {BV}}, - volume = 7, - pages = {154--162}, - url = {https://doi.org/10.1016/j.hal.2007.06.004}, - doi = {10.1016/j.hal.2007.06.004}, - number = 2} - -@Article{anderson1997turning, - title = {Turning back the harmful red tide}, - author = {Donald M. Anderson}, - year = 1997, - journal = {Nature}, - publisher = {Springer Science and Business Media {LLC}}, - volume = 388, - pages = {513--514}, - url = {https://doi.org/10.1038/41415}, - doi = {10.1038/41415}, - number = 6642} - -@Article{sengco2001removal, - title = {Removal of red- and brown-tide cells using clay flocculation. I. Laboratory culture experiments with Gymnodinium breve and Aureococcus anophagefferens}, - author = {MR Sengco and A Li and K Tugend and D Kulis and DM Anderson}, - year = 2001, - journal = {Marine Ecology Progress Series}, - publisher = {Inter-Research Science Center}, - volume = 210, - pages = {41--53}, - url = {https://doi.org/10.3354/meps210041}, - doi = {10.3354/meps210041} -} - -@Article{pierce2004removal, - title = {Removal of harmful algal cells (Karenia brevis) and toxins from seawater culture by clay flocculation}, - author = {Richard H. Pierce and Michael S. Henry and Christopher J. Higham and Patricia Blum and Mario R. Sengco and Donald M. Anderson}, - year = 2004, - journal = {Harmful Algae}, - publisher = {Elsevier {BV}}, - volume = 3, - pages = {141--148}, - url = {https://doi.org/10.1016/j.hal.2003.09.003}, - doi = {10.1016/j.hal.2003.09.003}, - number = 2} - -@Article{sun2004synergistic, - title = {Synergistic effect of sophorolipid and loess combination in harmful algal blooms mitigation}, - author = {Xiao-Xia Sun and Young-Ju Lee and Joong-Ki Choi and Eun-Ki Kim}, - year = 2004, - journal = {Marine Pollution Bulletin}, - publisher = {Elsevier {BV}}, - volume = 48, - pages = {863--872}, - url = {https://doi.org/10.1016/j.marpolbul.2003.11.002}, - doi = {10.1016/j.marpolbul.2003.11.002}, - number = {9-10} -} - -@article{baek2003mitigation, - title = {Mitigation of harmful algal blooms by sophorolipid}, - author = {Baek, Seung-Hak and Sun, Xiao-Xia and Lee, Young-Ju and Wang, Song-Young and Han, Kyung-Nam and Choi, Joong-Ki and Noh, Jae-Hoon and Kim, Eun-Ki}, - journal = {Journal of microbiology and biotechnology}, - volume = {13}, - number = {5}, - pages = {651--659}, - year = {2003}, - publisher = {The Korean Society for Microbiology and Biotechnology} -} - -@Article{song2021an, - title = {An eco-environmental assessment of harmful algal bloom mitigation using modified clay}, - author = {Xiuxian Song and Yue Zhang and Zhiming Yu}, - year = 2021, - journal = {Harmful Algae}, - publisher = {Elsevier {BV}}, - volume = 107, - pages = 102067, - url = {https://doi.org/10.1016/j.hal.2021.102067}, - doi = {10.1016/j.hal.2021.102067} -} - -@Article{lu2016application, - title = {Application of {PAC}-modified kaolin to mitigate Prorocentrum donghaiense: effects on cell removal and phosphorus cycling in a laboratory setting}, - author = {Guangyuan Lu and Xiuxian Song and Zhiming Yu and Xihua Cao}, - year = 2016, - journal = {Journal of Applied Phycology}, - publisher = {Springer Science and Business Media {LLC}}, - volume = 29, - pages = {917--928}, - url = {https://doi.org/10.1007/s10811-016-0992-3}, - doi = {10.1007/s10811-016-0992-3}, - number = 2} - -@Article{liu2022in, - title = {In situ high-resolution two-dimensional profiles of redox sensitive metal mobility in sediment-water interface and porewater from estuarine sediments}, - author = {Wei Liu and Guangyuan Lu and Wen-Xiong Wang}, - year = 2022, - journal = {Science of The Total Environment}, - publisher = {Elsevier {BV}}, - volume = 820, - pages = 153034, - url = {https://doi.org/10.1016/j.scitotenv.2022.153034}, - doi = {10.1016/j.scitotenv.2022.153034} -} - -@Article{lurling2012controlling, - title = {Controlling toxic cyanobacteria: Effects of dredging and phosphorus-binding clay on cyanobacteria and microcystins}, - author = {Miquel Lürling and Elisabeth J. Faassen}, - year = 2012, - journal = {Water Research}, - publisher = {Elsevier {BV}}, - volume = 46, - pages = {1447--1459}, - url = {https://doi.org/10.1016/j.watres.2011.11.008}, - doi = {10.1016/j.watres.2011.11.008}, - number = 5} - -@Article{pan2012reducing, - title = {Reducing the Recruitment of Sedimented Algae and Nutrient Release into the Overlying Water Using Modified Soil/Sand Flocculation-Capping in Eutrophic Lakes}, - author = {Gang Pan and Lichun Dai and Liang Li and Linchen He and Hong Li and Lei Bi and Ramesh D. Gulati}, - year = 2012, - journal = {Environmental Science \& Technology}, - publisher = {American Chemical Society ({ACS})}, - volume = 46, - pages = {5077--5084}, - url = {https://doi.org/10.1021/es3000307}, - doi = {10.1021/es3000307}, - number = 9} - -@Article{li2013a, - title = {A Universal Method for Flocculating Harmful Algal Blooms in Marine and Fresh Waters Using Modified Sand}, - author = {Liang Li and Gang Pan}, - year = 2013, - journal = {Environmental Science \& Technology}, - publisher = {American Chemical Society ({ACS})}, - volume = 47, - pages = {4555--4562}, - url = {https://doi.org/10.1021/es305234d}, - doi = {10.1021/es305234d}, - number = 9} - -@Article{wang2013flocculation, - title = {Flocculation of {{\textit{Microcystis aeruginosa}}} Using Modified Larch Tannin}, - author = {Li Wang and Wenyan Liang and Jian Yu and Zhixia Liang and Lingling Ruan and Yuanchun Zhang}, - year = 2013, - journal = {Environmental Science \& Technology}, - publisher = {American Chemical Society ({ACS})}, - volume = 47, - pages = {5771--5777}, - url = {https://doi.org/10.1021/es400793x}, - doi = {10.1021/es400793x}, - number = 11} - -@Article{li2015simultaneous, - title = {Simultaneous Removal of Harmful Algal Blooms and Microcystins Using Microorganism- and Chitosan-Modified Local Soil}, - author = {Hong Li and Gang Pan}, - year = 2015, - journal = {Environmental Science \& Technology}, - publisher = {American Chemical Society ({ACS})}, - volume = 49, - pages = {6249--6256}, - url = {https://doi.org/10.1021/acs.est.5b00840}, - doi = {10.1021/acs.est.5b00840}, - number = 10} - -@Article{wang2016manipulating, - title = {Manipulating nutrient limitation using modified local soils: A case study at Lake Taihu (China)}, - author = {Lijing Wang and Gang Pan and Wenqing Shi and Zhibin Wang and Honggang Zhang}, - year = 2016, - journal = {Water Research}, - publisher = {Elsevier {BV}}, - volume = 101, - pages = {25--35}, - url = {https://doi.org/10.1016/j.watres.2016.05.055}, - doi = {10.1016/j.watres.2016.05.055} -} - -@Article{shi2016removal, - title = {Removal of Microcystis aeruginosa using cationic starch modified soils}, - author = {Wenqing Shi and Wanqiao Tan and Lijing Wang and Gang Pan}, - year = 2016, - journal = {Water Research}, - publisher = {Elsevier {BV}}, - volume = 97, - pages = {19--25}, - url = {https://doi.org/10.1016/j.watres.2015.06.029}, - doi = {10.1016/j.watres.2015.06.029} -} - -@Article{wang2016ecotoxicological, - title = {Ecotoxicological assessment of flocculant modified soil for lake restoration using an integrated biotic toxicity index}, - author = {Zhibin Wang and Honggang Zhang and Gang Pan}, - year = 2016, - journal = {Water Research}, - publisher = {Elsevier {BV}}, - volume = 97, - pages = {133--141}, - url = {https://doi.org/10.1016/j.watres.2015.08.033}, - doi = {10.1016/j.watres.2015.08.033} -} - -@Article{noyma2016controlling, - title = {Controlling cyanobacterial blooms through effective flocculation and sedimentation with combined use of flocculants and phosphorus adsorbing natural soil and modified clay}, - author = {Natalia Pessoa Noyma and Leonardo de Magalh{\~{a}}es and Luciana Lima Furtado and Ma{\'{\i}}ra Mucci and Frank van Oosterhout and Vera L.M. Huszar and Marcelo Manzi Marinho and Miquel Lürling}, - year = 2016, - journal = {Water Research}, - publisher = {Elsevier {BV}}, - volume = 97, - pages = {26--38}, - url = {https://doi.org/10.1016/j.watres.2015.11.057}, - doi = {10.1016/j.watres.2015.11.057} -} - -@Article{yuan2016flocculation, - title = {Flocculation of cyanobacterial cells using coal fly ash modified chitosan}, - author = {Yuting Yuan and Honggang Zhang and Gang Pan}, - year = 2016, - journal = {Water Research}, - publisher = {Elsevier {BV}}, - volume = 97, - pages = {11--18}, - url = {https://doi.org/10.1016/j.watres.2015.12.003}, - doi = {10.1016/j.watres.2015.12.003} -} - -@Article{huang2015using, - title = {Using chitosan-modified clays to control black-bloom-induced black suspended matter in Taihu Lake: Deposition and resuspension of black matter/clay flocs}, - author = {Yawen Huang and Lei Xu and Ruiming Han and Guoxiang Wang and Jianjian Wang and Junjie Jia and Peng Zhang and Yong Pang}, - year = 2015, - journal = {Harmful Algae}, - publisher = {Elsevier {BV}}, - volume = 45, - pages = {33--39}, - url = {https://doi.org/10.1016/j.hal.2015.04.003}, - doi = {10.1016/j.hal.2015.04.003} -} - -@Article{gang2012eutrophication, - title = {Eutrophication control using modified local soil/sand induced ecological restoration technology:Ⅰ. Effect and mechanism on short and long term improvement of water quality}, - author = {PAN Gang and and DAI Lichun and LI Liang and SHANG Yuanyuan and LI Hong and BI Lei and HE Linchen and WANG Lijing and WANG Dan and LI Qiaoxia and LI Liwen and GU Xiaozhi and ZHONG Jicheng and YU Yuhe and YAN Qingyun}, - year = 2012, - journal = {Journal of Lake Sciences}, - publisher = {Journal of Lake Sciences}, - volume = 24, - pages = {801--810}, - url = {https://doi.org/10.18307/2012.0601}, - doi = {10.18307/2012.0601}, - number = 6} - -@Article{shi2018hypoxia, - title = {Hypoxia Remediation and Methane Emission Manipulation Using Surface Oxygen Nanobubbles}, - author = {Wenqing Shi and Gang Pan and Qiuwen Chen and Lirong Song and Lin Zhu and Xiaonan Ji}, - year = 2018, - journal = {Environmental Science \& Technology}, - publisher = {American Chemical Society ({ACS})}, - volume = 52, - pages = {8712--8717}, - url = {https://doi.org/10.1021/acs.est.8b02320}, - doi = {10.1021/acs.est.8b02320}, - number = 15} - -@Article{xu2017enhanced, - title = {Enhanced Phosphorus Locking by Novel Lanthanum/Aluminum{\textendash}Hydroxide Composite: Implications for Eutrophication Control}, - author = {Rui Xu and Meiyi Zhang and Robert J. G. Mortimer and Gang Pan}, - year = 2017, - journal = {Environmental Science \& Technology}, - publisher = {American Chemical Society ({ACS})}, - volume = 51, - pages = {3418--3425}, - url = {https://doi.org/10.1021/acs.est.6b05623}, - doi = {10.1021/acs.est.6b05623}, - number = 6} - -@Article{waajen2017effects, - title = {Effects of combined flocculant {\textendash} Lanthanum modified bentonite treatment on aquatic macroinvertebrate fauna}, - author = {G. Waajen and M. Pauwels and M. Lürling}, - year = 2017, - journal = {Water Research}, - publisher = {Elsevier {BV}}, - volume = 122, - pages = {183--193}, - url = {https://doi.org/10.1016/j.watres.2017.05.075}, - doi = {10.1016/j.watres.2017.05.075} -} - -@Article{lurling2017critical, - title = {Critical assessment of chitosan as coagulant to remove cyanobacteria}, - author = {Miquel Lürling and Natalia Pessoa Noyma and Leonardo de Magalh{\~{a}}es and Marcela Miranda and Ma{\'{\i}}ra Mucci and Frank van Oosterhout and Vera L.M. Huszar and Marcelo Manzi Marinho}, - year = 2017, - journal = {Harmful Algae}, - publisher = {Elsevier {BV}}, - volume = 66, - pages = {1--12}, - url = {https://doi.org/10.1016/j.hal.2017.04.011}, - doi = {10.1016/j.hal.2017.04.011} -} - -@Article{waajen2016management, - title = {Management of eutrophication in Lake De Kuil (The Netherlands) using combined flocculant {\textendash} Lanthanum modified bentonite treatment}, - author = {Guido Waajen and Frank van Oosterhout and Grant Douglas and Miquel Lürling}, - year = 2016, - journal = {Water Research}, - publisher = {Elsevier {BV}}, - volume = 97, - pages = {83--95}, - url = {https://doi.org/10.1016/j.watres.2015.11.034}, - doi = {10.1016/j.watres.2015.11.034} -} - -@Article{bian2021electrostatic, - title = {Electrostatic co-assembly of nanoparticles with oppositely charged small molecules into static and dynamic superstructures}, - author = {Tong Bian and Andrea Gardin and Julius Gemen and Lothar Houben and Claudio Perego and Byeongdu Lee and Nadav Elad and Zonglin Chu and Giovanni M. Pavan and Rafal Klajn}, - year = 2021, - journal = {Nature Chemistry}, - publisher = {Springer Science and Business Media {LLC}}, - volume = 13, - pages = {940--949}, - url = {https://doi.org/10.1038/s41557-021-00752-9}, - doi = {10.1038/s41557-021-00752-9}, - number = 10} - -@Article{padilla2006preliminary, - title = {Preliminary Results On The Use Of Clay To Control {{\textit{Pyrodinium}}} Bloom - A Mitigation Strategy}, - author = {Larry V. Padilla and Maria Lourdes San Diego-McGlone and Rhodora V. Azanza}, - year = 2006, - journal = {Science Diliman}, - volume = 18, - pages = {35--42}, - url = {https://doaj.org/article/4ea1cce84d1442a28cee81c764954b41}, - number = 1} - - -@Article{hagstrom2005removal, - title = {Removal of Prymnesium parvum (Haptophyceae) cells under different nutrient conditions by clay}, - author = {Johannes A. Hagström and Edna Gran{\'{e}}li}, - year = 2005, - journal = {Harmful Algae}, - publisher = {Elsevier {BV}}, - volume = 4, - pages = {249--260}, - url = {https://doi.org/10.1016/j.hal.2004.03.004}, - doi = {10.1016/j.hal.2004.03.004}, - number = 2} - -@Article{archambault2003removal, - title = {Removal efficiency of the dinoflagellate Heterocapsa triquetra by phosphatic clay, and implications for the mitigation of harmful algal blooms}, - author = {MC Archambault and J Grant and VM Bricelj}, - year = 2003, - journal = {Marine Ecology Progress Series}, - publisher = {Inter-Research Science Center}, - volume = 253, - pages = {97--109}, - url = {https://doi.org/10.3354/meps253097}, - doi = {10.3354/meps253097} -} - -@book{anderson2001monitoring, - title = {Monitoring and management strategies for harmful algal blooms in coastal waters}, - author = {Anderson, Donald M and Andersen, Per and Bricelj, V Monica and Cullen, John J and Rensel, JE Jack}, - year = {2001}, - publisher = {Unesco Paris, France:} -} - - -@Article{boyd1979aluminum, - title = {Aluminum Sulfate (Alum) for Precipitating Clay Turbidity from Fish Ponds}, - author = {Claude E. Boyd}, - year = 1979, - journal = {Transactions of the American Fisheries Society}, - publisher = {Wiley}, - volume = 108, - pages = {307--313}, - url = {https://doi.org/10.1577/1548-8659%281979%29108%3C307%3Aasafpc%3E2.0.co%3B2}, - doi = {10.1577/1548-8659(1979)108<307:asafpc>2.0.co;2}, - number = 3} - -@Article{nishiyama2021photocatalytic, - title = {Photocatalytic solar hydrogen production from water on a 100-m2 scale}, - author = {Hiroshi Nishiyama and Taro Yamada and Mamiko Nakabayashi and Yoshiki Maehara and Masaharu Yamaguchi and Yasuko Kuromiya and Yoshie Nagatsuma and Hiromasa Tokudome and Seiji Akiyama and Tomoaki Watanabe and Ryoichi Narushima and Sayuri Okunaka and Naoya Shibata and Tsuyoshi Takata and Takashi Hisatomi and Kazunari Domen}, - year = 2021, - journal = {Nature}, - publisher = {Springer Science and Business Media {LLC}}, - volume = 598, - pages = {304--307}, - url = {https://doi.org/10.1038/s41586-021-03907-3}, - doi = {10.1038/s41586-021-03907-3}, - number = 7880} - -@Article{chen2021hydrodynamic, - title = {Hydrodynamic disturbance controls microbial community assembly and biogeochemical processes in coastal sediments}, - author = {Ya-Jou Chen and Pok Man Leung and Perran L. M. Cook and Wei Wen Wong and Tess Hutchinson and Vera Eate and Adam J. Kessler and Chris Greening}, - year = 2021, - journal = {The {ISME} Journal}, - publisher = {Springer Science and Business Media {LLC}}, - volume = 16, - pages = {750--763}, - url = {https://doi.org/10.1038/s41396-021-01111-9}, - doi = {10.1038/s41396-021-01111-9}, - number = 3} - -@Article{ren2022the, - title = {The Emergent Integrated Constructed Wetland-Reservoir ({CW}-R) Is Being Challenged by 2-Methylisoborneol Episode{\textemdash}A Case Study in Yanlonghu {CW}-R}, - author = {Xiao Ren and Jiaxin Sun and Qi Zhang and Yanxia Zuo and Jin Liu and Jiashou Liu and Lin Li and Lirong Song}, - year = 2022, - journal = {Water}, - publisher = {{MDPI} {AG}}, - volume = 14, - pages = 2670, - url = {https://doi.org/10.3390/w14172670}, - doi = {10.3390/w14172670}, - number = 17} - -@Article{zhang2023mib, - title = {淡水藻种库(FACHB)库藏产2-MIB蓝藻的鉴定及其产嗅特征研究}, - author = {张琪 and 夏逸若 and 李林 and 李天丽 and 郑凌凌 and 宋立荣}, - year = 2023, - journal = {水生生物学报}, - volume = 0, - pages = {0--0}, - url = {https://doi.org/10.7541/2023.2022.0270}, - doi = {10.7541/2023.2022.0270}, - number = 0} - -@Article{xu2018phytoplankton, - title = {Phytoplankton $\upsigma${PSII} and Excitation Dissipation: Implications for Estimates of Primary Productivity}, - author = {Kui Xu and Johann Lavaud and Rupert Perkins and Emily Austen and Marl{\`{e}}ne Bonnanfant and Douglas A. Campbell}, - year = 2018, - journal = {Frontiers in Marine Science}, - publisher = {Frontiers Media {SA}}, - volume = 5, - url = {https://doi.org/10.3389/fmars.2018.00281}, - pages = {1--16}, - doi = {10.3389/fmars.2018.00281} -} - -@Article{hughes2018roadmaps, - title = {Roadmaps and Detours: Active Chlorophyll-{{\textit{a}}} Assessments of Primary Productivity Across Marine and Freshwater Systems}, - author = {David J. Hughes and Douglas A. Campbell and Martina A. Doblin and Jacco C. Kromkamp and Evelyn Lawrenz and C. Mark Moore and Kevin Oxborough and Ond{\v{r}}ej Pr{\'{a}}{\v{s}}il and Peter J. Ralph and Marco F. Alvarez and David J. Suggett}, - year = 2018, - journal = {Environmental Science \& Technology}, - publisher = {American Chemical Society ({ACS})}, - volume = 52, - pages = {12039--12054}, - url = {https://doi.org/10.1021/acs.est.8b03488}, - doi = {10.1021/acs.est.8b03488}, - number = 21} - -@Article{xu2017connectivity, - title = {Connectivity among Photosystem {II} centers in phytoplankters: Patterns and responses}, - author = {Kui Xu and Jessica L. Grant-Burt and Natalie Donaher and Douglas A. Campbell}, - year = 2017, - journal = {Biochimica et Biophysica Acta ({BBA}) - Bioenergetics}, - publisher = {Elsevier {BV}}, - volume = 1858, - pages = {459--474}, - url = {https://doi.org/10.1016/j.bbabio.2017.03.003}, - doi = {10.1016/j.bbabio.2017.03.003}, - number = 6} - -@Article{li2021algicidal, - title = {Algicidal mechanism of Raoultella ornithinolytica against Microcystis aeruginosa: Antioxidant response, photosynthetic system damage and microcystin degradation}, - author = {Dongpeng Li and Xin Kang and Linglong Chu and Yifei Wang and Xinshan Song and Xiaoxiang Zhao and Xin Cao}, - year = 2021, - journal = {Environmental Pollution}, - publisher = {Elsevier {BV}}, - volume = 287, - pages = 117644, - url = {https://doi.org/10.1016/j.envpol.2021.117644}, - doi = {10.1016/j.envpol.2021.117644} -} - -@Article{masojdek1999photoadaptation, - title = {Photoadaptation of two members of the Chlorophyta ( Scenedesmus and Chlorella ) in laboratory and outdoor cultures: changes in chlorophyll fluorescence quenching and the xanthophyll cycle}, - author = {Ji{\v{r}}{\'{\i}} Masoj{\'{\i}}dek and Giuseppe Torzillo and Michal Kobl{\'{\i}}{\v{z}}ek and Ji{\v{r}}{\'{\i}} Kopeck{\'{y}} and Paola Bernardini and Angelo Sacchi and Josef Komenda}, - year = 1999, - journal = {Planta}, - publisher = {Springer Science and Business Media {LLC}}, - volume = 209, - pages = {126--135}, - url = {https://doi.org/10.1007/s004250050614}, - doi = {10.1007/s004250050614}, - number = 1} - -@Article{su2023biosynthesis, - title = {Biosynthesis of 2-methylisoborneol is regulated by chromatic acclimation of {{\textit{Pseudanabaena}}}}, - author = {Ming Su and Jiao Fang and Zeyu Jia and Yuliang Su and Yiping Zhu and Bin Wu and John C. Little and Jianwei Yu and Min Yang}, - year = 2023, - journal = {Environmental Research}, - publisher = {Elsevier {BV}}, - volume = 221, - pages = 115260, - url = {https://doi.org/10.1016/j.envres.2023.115260}, - doi = {10.1016/j.envres.2023.115260}, - other = {author1} -} - -@Article{kalaji2014frequently, - title = {Frequently asked questions about in vivo chlorophyll fluorescence: practical issues}, - author = {Hazem M. Kalaji and Gert Schansker and Richard J. Ladle and Vasilij Goltsev and Karolina Bosa and Suleyman I. Allakhverdiev and Marian Brestic and Filippo Bussotti and Angeles Calatayud and Piotr D{\k{a}}browski and Nabil I. Elsheery and Lorenzo Ferroni and Lucia Guidi and Sander W. Hogewoning and Anjana Jajoo and Amarendra N. Misra and Sergio G. Nebauer and Simonetta Pancaldi and Consuelo Penella and DorothyBelle Poli and Martina Pollastrini and Zdzislawa B. Romanowska-Duda - and Beata Rutkowska and Jo{\~{a}}o Ser{\^{o}}dio and Kancherla Suresh and Wies{\l}aw Szulc and Eduardo Tambussi and Marcos Yanniccari and Marek Zivcak}, - year = 2014, - journal = {Photosynthesis Research}, - publisher = {Springer Science and Business Media {LLC}}, - volume = 122, - pages = {121--158}, - url = {https://doi.org/10.1007/s11120-014-0024-6}, - doi = {10.1007/s11120-014-0024-6}, - number = 2} - -@Article{uwizeye2021morphological, - title = {Morphological bases of phytoplankton energy management and physiological responses unveiled by 3D subcellular imaging}, - author = {Clarisse Uwizeye and Johan Decelle and Pierre-Henri Jouneau and Serena Flori and Benoit Gallet and Jean-Baptiste Keck and Davide Dal Bo and Christine Moriscot and Claire Seydoux and Fabien Chevalier and Nicole L. Schieber and Rachel Templin and Guillaume Allorent and Florence Courtois and Gilles Curien and Yannick Schwab and Guy Schoehn and Samuel C. Zeeman and Denis Falconet and Giovanni Finazzi}, - year = 2021, - journal = {Nature Communications}, - publisher = {Springer Science and Business Media {LLC}}, - volume = 12, - url = {https://doi.org/10.1038/s41467-021-21314-0}, - doi = {10.1038/s41467-021-21314-0}, - number = 1} - -@Article{kriete2019interplay, - title = {Interplay between structural hierarchy and exciton diffusion in artificial light harvesting}, - author = {Björn Kriete and Julian Lüttig and Tenzin Kunsel and Pavel Mal{\'{y}} and Thomas L. C. Jansen and Jasper Knoester and Tobias Brixner and Maxim S. Pshenichnikov}, - year = 2019, - journal = {Nature Communications}, - publisher = {Springer Science and Business Media {LLC}}, - volume = 10, - url = {https://doi.org/10.1038/s41467-019-12345-9}, - doi = {10.1038/s41467-019-12345-9}, - number = 1} - -@Article{antonucci2022carbon, - title = {Carbon nanotube uptake in cyanobacteria for near-infrared imaging and enhanced bioelectricity generation in living photovoltaics}, - author = {Alessandra Antonucci and Melania Reggente and Charlotte Roullier and Alice J. Gillen and Nils Schuergers and Vitalijs Zubkovs and Benjamin P. Lambert and Mohammed Mouhib and Elisabetta Carata and Luciana Dini and Ardemis A. Boghossian}, - year = 2022, - journal = {Nature Nanotechnology}, - publisher = {Springer Science and Business Media {LLC}}, - volume = 17, - pages = {1111--1119}, - url = {https://doi.org/10.1038/s41565-022-01198-x}, - doi = {10.1038/s41565-022-01198-x}, - number = 10} - -@Article{sakimoto2016selfphotosensitization, - title = {Self-photosensitization of nonphotosynthetic bacteria for solar-to-chemical production}, - author = {Kelsey K. Sakimoto and Andrew Barnabas Wong and Peidong Yang}, - year = 2016, - journal = {Science}, - publisher = {American Association for the Advancement of Science ({AAAS})}, - volume = 351, - pages = {74--77}, - url = {https://doi.org/10.1126/science.aad3317}, - doi = {10.1126/science.aad3317}, - number = 6268} - -@Article{vejrazka2012photosynthetic, - title = {Photosynthetic efficiency and oxygen evolution of Chlamydomonas reinhardtii under continuous and flashing light}, - author = {Carsten Vejrazka and Marcel Janssen and Giulia Benvenuti and Mathieu Streefland and Ren{\'{e}} H. Wijffels}, - year = 2012, - journal = {Applied Microbiology and Biotechnology}, - publisher = {Springer Science and Business Media {LLC}}, - volume = 97, - pages = {1523--1532}, - url = {https://doi.org/10.1007/s00253-012-4390-8}, - doi = {10.1007/s00253-012-4390-8}, - number = 4} - -@Article{wondraczek2013solar, - title = {Solar spectral conversion for improving the photosynthetic activity in algae reactors}, - author = {Lothar Wondraczek and Miroslaw Batentschuk and Markus A. Schmidt and Rudolf Borchardt and Simon Scheiner and Benjamin Seemann and Peter Schweizer and Christoph J. Brabec}, - year = 2013, - journal = {Nature Communications}, - publisher = {Springer Science and Business Media {LLC}}, - volume = 4, - url = {https://doi.org/10.1038/ncomms3047}, - doi = {10.1038/ncomms3047}, - number = 1} - -@Article{mccormick2015biophotovoltaics, - title = {Biophotovoltaics: oxygenic photosynthetic organisms in the world of bioelectrochemical systems}, - author = {Alistair J. McCormick and Paolo Bombelli and Robert W. Bradley and Rebecca Thorne and Tobias Wenzel and Christopher J. Howe}, - year = 2015, - journal = {Energy {\&} Environmental Science}, - publisher = {Royal Society of Chemistry ({RSC})}, - volume = 8, - pages = {1092--1109}, - url = {https://doi.org/10.1039/c4ee03875d}, - doi = {10.1039/c4ee03875d}, - number = 4} - -@Article{hwang2014photoautotrophic, - title = {Photoautotrophic hydrogen production by eukaryotic microalgae under aerobic conditions}, - author = {Jae-Hoon Hwang and Hyun-Chul Kim and Jeong-A Choi and R.A.I. Abou-Shanab and Brian A. Dempsey and John M Regan and Jung Rae Kim and Hocheol Song and In-Hyun Nam and Su-Nam Kim and Woojung Lee and Donghee Park and Yongje Kim and Jaeyoung Choi and Min-Kyu Ji and Woosik Jung and Byong-Hun Jeon}, - year = 2014, - journal = {Nature Communications}, - publisher = {Springer Science and Business Media {LLC}}, - volume = 5, - url = {https://doi.org/10.1038/ncomms4234}, - doi = {10.1038/ncomms4234}, - number = 1} - -@Article{pichersky2016why, - title = {Why do plants produce so many terpenoid compounds?}, - author = {Eran Pichersky and Robert A. Raguso}, - year = 2016, - journal = {New Phytologist}, - publisher = {Wiley}, - volume = 220, - pages = {692--702}, - url = {https://doi.org/10.1111/nph.14178}, - doi = {10.1111/nph.14178}, - number = 3} - -@Article{bugbee2016toward, - title = {Toward an optimal spectral quality for plant growth and development: the importance of radiation capture}, - author = {B. Bugbee}, - year = 2016, - journal = {Acta Horticulturae}, - publisher = {International Society for Horticultural Science ({ISHS})}, - pages = {1--12}, - url = {https://doi.org/10.17660/actahortic.2016.1134.1}, - doi = {10.17660/actahortic.2016.1134.1}, - number = 1134} - -@Article{uyeda2016a, - title = {A Comprehensive Study of Cyanobacterial Morphological and Ecological Evolutionary Dynamics through Deep Geologic Time}, - author = {Josef C. Uyeda and Luke J. Harmon and Carrine E. Blank}, - year = 2016, - journal = {{PLOS} {ONE}}, - publisher = {Public Library of Science ({PLoS})}, - volume = 11, - pages = {e0162539}, - url = {https://doi.org/10.1371/journal.pone.0162539}, - doi = {10.1371/journal.pone.0162539}, - number = 9, - editor = {Brett Neilan} -} - -@Article{hugenholtz2021prokaryotic, - title = {Prokaryotic taxonomy and nomenclature in the age of big sequence data}, - author = {Philip Hugenholtz and Maria Chuvochina and Aharon Oren and Donovan H. Parks and Rochelle M. Soo}, - year = 2021, - journal = {The {ISME} Journal}, - publisher = {Springer Science and Business Media {LLC}}, - volume = 15, - pages = {1879--1892}, - url = {https://doi.org/10.1038/s41396-021-00941-x}, - doi = {10.1038/s41396-021-00941-x}, - number = 7} - -@Article{sanchezbaracaldo2015origin, - title = {Origin of marine planktonic cyanobacteria}, - author = {Patricia S{\'{a}}nchez-Baracaldo}, - year = 2015, - journal = {Scientific Reports}, - publisher = {Springer Science and Business Media {LLC}}, - volume = 5, - url = {https://doi.org/10.1038/srep17418}, - doi = {10.1038/srep17418}, - number = 1} - -@Article{grettenberger2020a, - title = {A phylogenetically novel cyanobacterium most closely related to Gloeobacter}, - author = {Christen L. Grettenberger and Dawn Y. Sumner and Kate Wall and C. Titus Brown and Jonathan A. Eisen and Tyler J. Mackey and Ian Hawes and Guillaume Jospin and Anne D. Jungblut}, - year = 2020, - journal = {The {ISME} Journal}, - publisher = {Springer Science and Business Media {LLC}}, - volume = 14, - pages = {2142--2152}, - url = {https://doi.org/10.1038/s41396-020-0668-5}, - doi = {10.1038/s41396-020-0668-5}, - number = 8} - -@InProceedings{liu2014a, - title = {A fast land surface temperature retrieval method for modis images using band 22 and 23 data}, - author = {Yao Liu and Wenjuan Zhang and Bing Zhang and Quanjun Jiao}, - year = 2014, - booktitle = {2014 {IEEE} Geoscience and Remote Sensing Symposium}, - publisher = {{IEEE}}, - url = {https://doi.org/10.1109/igarss.2014.6946802}, - doi = {10.1109/igarss.2014.6946802} -} - -@Article{liu2020secchi, - title = {Secchi Disk Depth Estimation from China's New Generation of {GF}-5 Hyperspectral Observations Using a Semi-Analytical Scheme}, - author = {Yao Liu and Chenchao Xiao and Junsheng Li and Fangfang Zhang and Shenglei Wang}, - year = 2020, - journal = {Remote Sensing}, - publisher = {{MDPI} {AG}}, - volume = 12, - pages = 1849, - url = {https://doi.org/10.3390/rs12111849}, - doi = {10.3390/rs12111849}, - number = 11} - -@Article{liu2022a, - title = {A Classification-Based, Semianalytical Approach for Estimating Water Clarity From a Hyperspectral Sensor Onboard the {ZY}1-02D Satellite}, - author = {Yao Liu and Junsheng Li and Chenchao Xiao and Fangfang Zhang and Shenglei Wang and Ziyao Yin and Chao Wang and Bing Zhang}, - year = 2022, - journal = {{IEEE} Transactions on Geoscience and Remote Sensing}, - publisher = {Institute of Electrical and Electronics Engineers ({IEEE})}, - volume = 60, - pages = {1--14}, - url = {https://doi.org/10.1109/tgrs.2022.3161651}, - doi = {10.1109/tgrs.2022.3161651} -} - -@Article{naselliflores2020life, - title = {Life in suspension and its impact on phytoplankton morphology: an homage to Colin S. Reynolds}, - author = {Luigi Naselli-Flores and Tamar Zohary and Judit Padis{\'{a}}k}, - year = 2020, - journal = {Hydrobiologia}, - publisher = {Springer Science and Business Media {LLC}}, - volume = 848, - pages = {7--30}, - url = {https://doi.org/10.1007/s10750-020-04217-x}, - doi = {10.1007/s10750-020-04217-x}, - number = 1} - -@Article{olejarz2021the, - title = {The Great Oxygenation Event as a consequence of ecological dynamics modulated by planetary change}, - author = {Jason Olejarz and Yoh Iwasa and Andrew H. Knoll and Martin A. Nowak}, - year = 2021, - journal = {Nature Communications}, - publisher = {Springer Science and Business Media {LLC}}, - volume = 12, - url = {https://doi.org/10.1038/s41467-021-23286-7}, - doi = {10.1038/s41467-021-23286-7}, - number = 1} - -@article{dassarma2021early, - title = {Early evolution of purple retinal pigments on Earth and implications for exoplanet biosignatures}, - volume = {20}, - DOI = {10.1017/S1473550418000423}, - number = {3}, - journal = {International Journal of Astrobiology}, - publisher = {Cambridge University Press}, - author = {DasSarma, Shiladitya and Schwieterman, Edward W.}, - year = {2021}, - pages = {241–250}} - -@Article{schirrmeister2011the, - title = {The origin of multicellularity in cyanobacteria}, - author = {Bettina E Schirrmeister and Alexandre Antonelli and Homayoun C Bagheri}, - year = 2011, - journal = {{BMC} Evolutionary Biology}, - publisher = {Springer Science and Business Media {LLC}}, - volume = 11, - url = {https://doi.org/10.1186/1471-2148-11-45}, - doi = {10.1186/1471-2148-11-45}, - number = 1} - -@Article{anbar2007a, - title = {A Whiff of Oxygen Before the Great Oxidation Event?}, - author = {Ariel D. Anbar and Yun Duan and Timothy W. Lyons and Gail L. Arnold and Brian Kendall and Robert A. Creaser and Alan J. Kaufman and Gwyneth W. Gordon and Clinton Scott and Jessica Garvin and Roger Buick}, - year = 2007, - journal = {Science}, - publisher = {American Association for the Advancement of Science ({AAAS})}, - volume = 317, - pages = {1903--1906}, - url = {https://doi.org/10.1126/science.1140325}, - doi = {10.1126/science.1140325}, - number = 5846} - -@Article{ryabov2021shape, - title = {Shape matters: the relationship between cell geometry and diversity in phytoplankton}, - author = {Alexey Ryabov and Onur Kerimoglu and Elena Litchman and Irina Olenina and Leonilde Roselli and Alberto Basset and Elena Stanca and Bernd Blasius}, - year = 2021, - journal = {Ecology Letters}, - publisher = {Wiley}, - volume = 24, - pages = {847--861}, - url = {https://doi.org/10.1111/ele.13680}, - doi = {10.1111/ele.13680}, - number = 4, - editor = {Jonathan Chase} -} - -@Article{huo2020combining, - title = {Combining morphological and metabarcoding approaches reveals the freshwater eukaryotic phytoplankton community}, - author = {Shouliang Huo and Xiaochuang Li and Beidou Xi and Hanxiao Zhang and Chunzi Ma and Zhuoshi He}, - year = 2020, - journal = {Environmental Sciences Europe}, - publisher = {Springer Science and Business Media {LLC}}, - volume = 32, - url = {https://doi.org/10.1186/s12302-020-00321-w}, - doi = {10.1186/s12302-020-00321-w}, - number = 1} - -@Article{neil2019a, - title = {A global approach for chlorophyll-a retrieval across optically complex inland waters based on optical water types}, - author = {C. Neil and E. Spyrakos and P.D. Hunter and A.N. Tyler}, - year = 2019, - journal = {Remote Sensing of Environment}, - publisher = {Elsevier {BV}}, - volume = 229, - pages = {159--178}, - url = {https://doi.org/10.1016/j.rse.2019.04.027}, - doi = {10.1016/j.rse.2019.04.027} -} - -@Article{leonilde2017individual, - title = {Individual trait variation in phytoplankton communities across multiple spatial scales}, - author = {Roselli Leonilde and Litchman Elena and Stanca Elena and Cozzoli Francesco and Basset Alberto}, - year = 2017, - journal = {Journal of Plankton Research}, - publisher = {Oxford University Press ({OUP})}, - volume = 39, - pages = {577--588}, - url = {https://doi.org/10.1093/plankt/fbx001}, - doi = {10.1093/plankt/fbx001}, - number = 3} - -@Article{behrenfeld2021phytoplankton, - title = {Phytoplankton community structuring and succession in a competition-neutral resource landscape}, - author = {Michael J. Behrenfeld and Emmanuel S. Boss and Kimberly H. Halsey}, - year = 2021, - journal = {{ISME} Communications}, - publisher = {Springer Science and Business Media {LLC}}, - volume = 1, - url = {https://doi.org/10.1038/s43705-021-00011-5}, - doi = {10.1038/s43705-021-00011-5}, - number = 1} - -@Article{davies2016a, - title = {A database of marine phytoplankton abundance, biomass and species composition in Australian waters}, - author = {Claire H. Davies and Alex Coughlan and Gustaaf Hallegraeff and Penelope Ajani and Linda Armbrecht and Natalia Atkins and Prudence Bonham and Steve Brett and Richard Brinkman and Michele Burford and Lesley Clementson and Peter Coad and Frank Coman and Diana Davies and Jocelyn Dela-Cruz and Michelle Devlin and Steven Edgar and Ruth Eriksen and Miles Furnas and Christel Hassler and David Hill and Michael Holmes and Tim Ingleton and Ian Jameson and Sophie C. Leterme and Christian - L{\o}nborg and James McLaughlin and Felicity McEnnulty and A. David McKinnon and Margaret Miller and Shauna Murray and Sasi Nayar and Renee Patten and Sarah A. Pausina and Tim Pritchard and Roger Proctor and Diane Purcell-Meyerink and Eric Raes and David Rissik and Jason Ruszczyk and Anita Slotwinski and Kerrie M. Swadling and Katherine Tattersall and Peter Thompson and Paul Thomson and Mark Tonks and Thomas W. Trull and Julian Uribe-Palomino and Anya M. Waite and Rouna - Yauwenas and Anthony Zammit and Anthony J. Richardson}, - year = 2016, - journal = {Scientific Data}, - publisher = {Springer Science and Business Media {LLC}}, - volume = 3, - url = {https://doi.org/10.1038/sdata.2016.43}, - doi = {10.1038/sdata.2016.43}, - number = 1} - -@Article{simeis2021actinomycetes, - title = {Actinomycetes: A Never-Ending Source of Bioactive Compounds{\textemdash}An Overview on Antibiotics Production}, - author = {Davide De Simeis and Stefano Serra}, - year = 2021, - journal = {Antibiotics}, - publisher = {{MDPI} {AG}}, - volume = 10, - pages = 483, - url = {https://doi.org/10.3390/antibiotics10050483}, - doi = {10.3390/antibiotics10050483}, - number = 5} - -@Article{shen2023chlorophyll, - title = {Chlorophyll {{\textit{f}}} production in two new subaerial cyanobacteria of the family Oculatellaceae}, - author = {Li-Qin Shen and Zhong-Chun Zhang and Li Huang and Lu-Dan Zhang and Gongliang Yu and Min Chen and Renhui Li and Bao-Sheng Qiu}, - year = 2023, - journal = {Journal of Phycology}, - publisher = {Wiley}, - url = {https://doi.org/10.1111/jpy.13314}, - doi = {10.1111/jpy.13314} -} - -@Article{zohary2020temperature, - title = {Temperature and the size of freshwater phytoplankton}, - author = {Tamar Zohary and Giovanna Flaim and Ulrich Sommer}, - year = 2020, - journal = {Hydrobiologia}, - publisher = {Springer Science and Business Media {LLC}}, - volume = 848, - pages = {143--155}, - url = {https://doi.org/10.1007/s10750-020-04246-6}, - doi = {10.1007/s10750-020-04246-6}, - number = 1} - -@Article{hirst2014body, - title = {Body shape shifting during growth permits tests that distinguish between competing geometric theories of metabolic scaling}, - author = {Andrew G. Hirst and Douglas S. Glazier and David Atkinson}, - year = 2014, - journal = {Ecology Letters}, - publisher = {Wiley}, - volume = 17, - pages = {1274--1281}, - url = {https://doi.org/10.1111/ele.12334}, - doi = {10.1111/ele.12334}, - number = 10, - editor = {Dustin Marshall} -} - -@Article{durante2019allometric, - title = {Allometric scaling and morphological variation in sinking rate of phytoplankton}, - author = {Giulia Durante and Alberto Basset and Elena Stanca and Leonilde Roselli}, - year = 2019, - journal = {Journal of Phycology}, - publisher = {Wiley}, - volume = 55, - pages = {1386--1393}, - url = {https://doi.org/10.1111/jpy.12916}, - doi = {10.1111/jpy.12916}, - number = 6} - -@Article{grover1989influence, - title = {{INFLUENCE} {OF} {CELL} {SHAPE} {AND} {SIZE} {ON} {ALGAL} {COMPETITIVE} {ABILITY}}, - author = {James P. Grover}, - year = 1989, - journal = {Journal of Phycology}, - publisher = {Wiley}, - volume = 25, - pages = {402--405}, - url = {https://doi.org/10.1111/j.1529-8817.1989.tb00138.x}, - doi = {10.1111/j.1529-8817.1989.tb00138.x}, - number = 2} - -@article{karp2016elongated, - title = {The elongated, the squat and the spherical: Selective pressures for phytoplankton shape}, - author = {Karp-Boss, Lee and Boss, Emmanuel}, - journal = {Aquatic microbial ecology and biogeochemistry: A dual perspective}, - url = {https://link.springer.com/content/pdf/10.1007/978-3-319-30259-1.pdf}, - pages = {25--34}, - year = {2016}, - publisher = {Springer}} - -@Article{naselliflores2011invited, - title = {Invited Review - Fight on Plankton! or, Phytoplankton Shape and Size as Adaptive Tools to Get Ahead in the Struggle for Life}, - author = {Luigi Naselli-Flores and Rossella Barone}, - year = 2011, - journal = {Cryptogamie, Algologie}, - publisher = {Museum National d{\textquotesingle}Histoire Naturelle, Paris, France}, - volume = 32, - pages = {157--204}, - url = {https://doi.org/10.7872/crya.v32.iss2.2011.157}, - doi = {10.7872/crya.v32.iss2.2011.157}, - number = 2} - -@Article{davidson2023bimodality, - title = {Bimodality and alternative equilibria do not help explain long-term patterns in shallow lake chlorophyll-a}, - author = {Thomas A. Davidson and Carl D. Sayer and Erik Jeppesen and Martin S{\o}ndergaard and Torben L. Lauridsen and Liselotte S. Johansson and Ambroise Baker and Daniel Graeber}, - year = 2023, - journal = {Nature Communications}, - publisher = {Springer Science and Business Media {LLC}}, - volume = 14, - url = {https://doi.org/10.1038/s41467-023-36043-9}, - doi = {10.1038/s41467-023-36043-9}, - number = 1} - -@Article{cao2023early, - title = {Early warning of MIB episode based on gene abundance and expression in drinking water reservoirs}, - author = {Tengxin Cao and Jiao Fang and Zeyu Jia and Yiping Zhu and Ming Su and Qi Zhang and Yichao Song and Jianwei Yu and Min Yang}, - year = 2023, - journal = {Water Research}, - volume = 231, - pages = 119667, - url = {https://www.sciencedirect.com/science/article/pii/S0043135423001021}, - issn = {0043-1354}, - doi = {https://doi.org/10.1016/j.watres.2023.119667}, - other = {correspond1} -} - -@Article{niedzwiedzki2023mass, - title = {Mass spectrometry and spectroscopic characterization of a tetrameric photosystem I supercomplex from Leptolyngbya ohadii, a desiccation-tolerant cyanobacterium}, - author = {Dariusz M. Niedzwiedzki and Nikki Cecil M. Magdaong and Xinyang Su and Noam Adir and Nir Keren and Haijun Liu}, - year = 2023, - journal = {Biochimica et Biophysica Acta ({BBA}) - Bioenergetics}, - publisher = {Elsevier {BV}}, - volume = 1864, - pages = 148955, - url = {https://doi.org/10.1016/j.bbabio.2023.148955}, - doi = {10.1016/j.bbabio.2023.148955}, - number = 2} - -@Article{churro2020a, - title = {A novel cyanobacterial geosmin producer, revising {GeoA} distribution and dispersion patterns in Bacteria}, - author = {Catarina Churro and Ana P. Semedo-Aguiar and Alexandra D. Silva and Jose B. Pereira-Leal and Ricardo B. Leite}, - year = 2020, - journal = {Scientific Reports}, - publisher = {Springer Science and Business Media {LLC}}, - volume = 10, - url = {https://doi.org/10.1038/s41598-020-64774-y}, - doi = {10.1038/s41598-020-64774-y}, - number = 1} - -@Article{hooper2023the, - title = {The importance of nutrient ratios in determining elevations in geosmin synthase ({geoA}) and 2-{MIB} cyclase (mic) resulting in Taste and Odour events.}, - author = {A.S Hooper and P. Kille and S.E. Watson and S.R. Christofides and R.G. Perkins}, - year = 2023, - journal = {Water Research}, - publisher = {Elsevier {BV}}, - pages = 119693, - url = {https://doi.org/10.1016/j.watres.2023.119693}, - doi = {10.1016/j.watres.2023.119693} -} - -@article{bai2009organic, - title = {Organic phosphorus species in surface sediments of a large, shallow, eutrophic lake, {Lake} {Taihu}, {China}}, - volume = {157}, - issn = {0269-7491}, - url = {https://www.sciencedirect.com/science/article/pii/S0269749109001298}, - doi = {https://doi.org/10.1016/j.envpol.2009.03.018}, - number = {8}, - journal = {Environmental Pollution}, - author = {Bai, Xiuling and Ding, Shiming and Fan, Chengxin and Liu, Tao and Shi, Dan and Zhang, Lu}, - year = {2009}, - keywords = {Sediment, Organic phosphorus, P NMR, Water column}, - pages = {2507--2513}, -} - -@article{bostrom1988exchange, - title = {Exchange of phosphorus across the sediment-water interface}, - volume = {170}, - issn = {1573-5117}, - url = {https://doi.org/10.1007/BF00024907}, - doi = {10.1007/BF00024907}, - number = {1}, - journal = {Hydrobiologia}, - author = {Boström, Bengt and Andersen, Jens M. and Fleischer, Siegfried and Jansson, Mats}, - month = dec, - year = {1988}, - pages = {229--244}, -} - -@article{chen2019situ, - title = {In situ, high-resolution evidence of phosphorus release from sediments controlled by the reductive dissolution of iron-bound phosphorus in a deep reservoir, southwestern {China}}, - volume = {666}, - issn = {0048-9697}, - url = {https://www.sciencedirect.com/science/article/pii/S0048969719306825}, - doi = {https://doi.org/10.1016/j.scitotenv.2019.02.194}, - journal = {Science of The Total Environment}, - author = {Chen, Quan and Chen, Jingan and Wang, Jingfu and Guo, Jianyang and Jin, Zuxue and Yu, Pingping and Ma, Zhenzhen}, - year = {2019}, - keywords = {Eutrophication, Phosphorus, Sediments, Deep reservoirs, Diffusive gradients in thin films (DGT), Southwestern China}, - pages = {39--45}, -} - -@article{ding2018internal, - title = {Internal phosphorus loading from sediments causes seasonal nitrogen limitation for harmful algal blooms}, - volume = {625}, - issn = {0048-9697}, - url = {https://www.sciencedirect.com/science/article/pii/S0048969717337816}, - doi = {https://doi.org/10.1016/j.scitotenv.2017.12.348}, - journal = {Science of The Total Environment}, - author = {Ding, Shiming and Chen, Musong and Gong, Mengdan and Fan, Xianfang and Qin, Boqiang and Xu, Hai and Gao, ShuaiShuai and Jin, Zengfeng and Tsang, Daniel C.W. and Zhang, Chaosheng}, - year = {2018}, - keywords = {Eutrophication, Harmful algal blooms, High-resolution sampling, Iron redox cycle, Lake sediment, Mobile phosphorus}, - pages = {872--884}, -} - -@article{gachter1988contribution, - title = {Contribution of bacteria to release and fixation of phosphorus in lake sediments}, - volume = {33}, - url = {https://aslopubs.onlinelibrary.wiley.com/doi/abs/10.4319/lo.1988.33.6part2.1542}, - doi = {https://doi.org/10.4319/lo.1988.33.6part2.1542}, - number = {6part2}, - journal = {Limnology and Oceanography}, - author = {Gächter, René and Meyer, Joseph S. and Mares, Antonin}, - year = {1988}, - note = {tex.eprint: https://aslopubs.onlinelibrary.wiley.com/doi/pdf/10.4319/lo.1988.33.6part2.1542}, - pages = {1542--1558}, -} - -@article{gao2016highresolution, - title = {High-resolution imaging of labile phosphorus and its relationship with iron redox state in lake sediments}, - volume = {219}, - issn = {0269-7491}, - url = {https://www.sciencedirect.com/science/article/pii/S0269749116304407}, - doi = {https://doi.org/10.1016/j.envpol.2016.05.053}, - journal = {Environmental Pollution}, - author = {Gao, Yulu and Liang, Tao and Tian, Shuhan and Wang, Lingqing and Holm, Peter E. and Bruun Hansen, Hans Christian}, - year = {2016}, - keywords = {Phosphorus, DGT, High resolution, Iron, Sediment-water interface}, - pages = {466--474}, -} - -@article{haggard2005phosphorus, - title = {Phosphorus flux from bottom sediments in lake eucha, oklahoma}, - volume = {34}, - url = {https://acsess.onlinelibrary.wiley.com/doi/abs/10.2134/jeq2005.0724}, - doi = {https://doi.org/10.2134/jeq2005.0724}, - number = {2}, - journal = {Journal of Environmental Quality}, - author = {Haggard, B. E. and Moore Jr., P. A. and DeLaune, P. B.}, - year = {2005}, - note = {tex.eprint: https://acsess.onlinelibrary.wiley.com/doi/pdf/10.2134/jeq2005.0724}, - pages = {724--728}, -} - -@article{hu2007mobility, - title = {Mobility of {Different} {Phosphorus} {Pools} in the {Sediment} of {Lake} {Dianchi} during {Cyanobacterial} {Blooms}}, - volume = {132}, - issn = {1573-2959}, - url = {https://doi.org/10.1007/s10661-006-9509-x}, - doi = {10.1007/s10661-006-9509-x}, - number = {1}, - journal = {Environmental Monitoring and Assessment}, - author = {Hu, Jun and Shen, Qiang and Liu, Yongding and Liu, Jiantong}, - month = sep, - year = {2007}, - pages = {141--153}, -} - -@article{huang2004environmental, - title = {Environmental soil phosphorus testing and phosphorus release in {Taihu} {Lake}, {China}}, - volume = {14}, - journal = {Pedosphere}, - author = {Huang, Qinghui and Wang, Zijian and Wang, Donghong and Ma, Mei and Jin, X.}, - month = nov, - year = {2004}, - pages = {461--466}, -} - -@article{huang2020magnitude, - title = {The magnitude and drivers of harmful algal blooms in {China}’s lakes and reservoirs: {A} national-scale characterization}, - volume = {181}, - issn = {0043-1354}, - url = {https://www.sciencedirect.com/science/article/pii/S0043135420304395}, - doi = {https://doi.org/10.1016/j.watres.2020.115902}, - journal = {Water Research}, - author = {Huang, Jiacong and Zhang, Yinjun and Arhonditsis, George B. and Gao, Junfeng and Chen, Qiuwen and Peng, Jian}, - year = {2020}, - keywords = {Eutrophication, Chlorophyll, General regression neural network, Harmful algal blooms, Risk analysis}, - pages = {115902}, -} - -@article{jin2006phosphorus, - title = {Phosphorus fractions and the effect of {pH} on the phosphorus release of the sediments from different trophic areas in {Taihu} {Lake}, {China}}, - volume = {139}, - issn = {0269-7491}, - url = {https://www.sciencedirect.com/science/article/pii/S0269749105002897}, - doi = {https://doi.org/10.1016/j.envpol.2005.05.010}, - number = {2}, - journal = {Environmental Pollution}, - author = {Jin, Xiangcan and Wang, Shengrui and Pang, Yan and Chang Wu, Feng}, - year = {2006}, - keywords = {pH, Phosphorus fractions, Phosphorus release, Sediment, Taihu Lake}, - pages = {288--295}, -} - -@article{liu2021cyanobacteria, - title = {Cyanobacteria blooms potentially enhance volatile organic compound ({VOC}) emissions from a eutrophic lake: {Field} and experimental evidence}, - volume = {202}, - issn = {0013-9351}, - url = {https://www.sciencedirect.com/science/article/pii/S0013935121009580}, - doi = {https://doi.org/10.1016/j.envres.2021.111664}, - journal = {Environmental Research}, - author = {Liu, Mengdi and Wu, Ting and Zhao, Xiaoyu and Zan, Fengyu and Yang, Geng and Miao, Yuqing}, - year = {2021}, - keywords = {Cyanobacteria blooms (CBBs), Eutrophic lake, Fluxes, Life stages, Volatile organic compounds (VOCs)}, - pages = {111664}, -} - -@article{mahler1999muddy, - title = {Muddy waters: temporal variation in sediment discharging from a karst spring}, - volume = {214}, - issn = {0022-1694}, - url = {https://www.sciencedirect.com/science/article/pii/S002216949800287X}, - doi = {https://doi.org/10.1016/S0022-1694(98)00287-X}, - number = {1}, - journal = {Journal of Hydrology}, - author = {Mahler, Barbara J. and Lynch, F.Leo}, - year = {1999}, - keywords = {Water quality, Karst, Pollution hydrology, Sediment transport, Size distribution, Spring}, - pages = {165--178}, -} - -@article{murray2006iron, - title = {Iron and phosphate dissolution during abiotic reduction of ferrihydrite-boehmite mixtures}, - volume = {70}, - url = {https://acsess.onlinelibrary.wiley.com/doi/abs/10.2136/sssaj2005.0292}, - doi = {https://doi.org/10.2136/sssaj2005.0292}, - number = {4}, - journal = {Soil Science Society of America Journal}, - author = {Murray, G. Christopher and Hesterberg, Dean}, - year = {2006}, - note = {tex.eprint: https://acsess.onlinelibrary.wiley.com/doi/pdf/10.2136/sssaj2005.0292}, - pages = {1318--1327}, -} - -@article{peng2017roles, - title = {The roles of cyanobacterial bloom in nitrogen removal}, - volume = {609}, - issn = {0048-9697}, - url = {https://www.sciencedirect.com/science/article/pii/S004896971730668X}, - doi = {https://doi.org/10.1016/j.scitotenv.2017.03.149}, - journal = {Science of The Total Environment}, - author = {Peng, Yuke and Liu, Lu and Jiang, Lijuan and Xiao, Lin}, - year = {2017}, - keywords = {Bloom cyanobacteria, Denitrification, Nitrogen removal, qPCR, SEM}, - pages = {297--303}, -} - -@article{qin2006nutrient, - title = {The nutrient forms, cycling and exchange flux in the sediment and overlying water system in lakes from the middle and lower reaches of {Yangtze} {River}}, - volume = {49}, - issn = {1862-2801}, - url = {https://doi.org/10.1007/s11430-006-8101-0}, - doi = {10.1007/s11430-006-8101-0}, - number = {1}, - journal = {Science in China Series D}, - author = {Qin, Boqiang and Zhu, Guangwei}, - month = may, - year = {2006}, - pages = {1}, -} - -@article{qu2013biogeochemical, - title = {Biogeochemical function of phosphorus-solubilising bacteria on cycling of phosphorus at the water-sediment interface under laboratorial simulated conditions}, - volume = {52}, - url = {https://www.inderscienceonline.com/doi/abs/10.1504/IJEP.2013.056361}, - doi = {10.1504/IJEP.2013.056361}, - number = {1-2}, - journal = {International Journal of Environment and Pollution}, - author = {Qu, Jian-Hang and Li, Hai-Feng and Chen, Nan and Yuan, Hong-Li}, - year = {2013}, - note = {tex.eprint: https://www.inderscienceonline.com/doi/pdf/10.1504/IJEP.2013.056361}, - pages = {104--116}, -} - -@article{sondergaard2003role, - title = {Role of sediment and internal loading of phosphorus in shallow lakes}, - volume = {506}, - issn = {1573-5117}, - url = {https://doi.org/10.1023/B:HYDR.0000008611.12704.dd}, - doi = {10.1023/B:HYDR.0000008611.12704.dd}, - number = {1}, - journal = {Hydrobiologia}, - author = {Søndergaard, Martin and Jensen, Jens Peder and Jeppesen, Erik}, - month = nov, - year = {2003}, - pages = {135--145}, -} - -@article{tay2022internal, - title = {Internal phosphorus recycling promotes rich and complex dynamics in an algae-phosphorus model: {Implications} for eutrophication management}, - volume = {532}, - issn = {0022-5193}, - url = {https://www.sciencedirect.com/science/article/pii/S0022519321003325}, - doi = {https://doi.org/10.1016/j.jtbi.2021.110913}, - journal = {Journal of Theoretical Biology}, - author = {Tay, Chai Jian and Mohd, Mohd Hafiz and Teh, Su Yean and Koh, Hock Lye}, - year = {2022}, - keywords = {Catastrophic shift, Generalized Hopf bifurcation, Hydra effect, Lake eutrophication, Paradox of enrichment}, - pages = {110913}, -} - -@article{zhao2020identification, - title = {Identification of regime shifts and their potential drivers in the shallow eutrophic lake yilong, southwest china}, - volume = {12}, - issn = {2071-1050}, - url = {https://www.mdpi.com/2071-1050/12/9/3704}, - doi = {10.3390/su12093704}, - number = {9}, - journal = {Sustainability}, - author = {Zhao, Lei and Wang, Mingguo and Liang, Zhongyao and Zhou, Qichao}, - year = {2020}, - note = {tex.article-number: 3704}, -} - -@article{zhou2022severe, - title = {Severe cyanobacteria accumulation potentially induces methylotrophic methane producing pathway in eutrophic lakes}, - volume = {292}, - issn = {0269-7491}, - url = {https://www.sciencedirect.com/science/article/pii/S026974912102025X}, - doi = {https://doi.org/10.1016/j.envpol.2021.118443}, - journal = {Environmental Pollution}, - author = {Zhou, Chuanqiao and Peng, Yu and Yu, Miaotong and Deng, Yang and Chen, Li and Zhang, Lanqing and Xu, Xiaoguang and Zhang, Siyuan and Yan, Yan and Wang, Guoxiang}, - year = {2022}, - keywords = {Cyanobacteria, Methane, Methane producing archaea, Methyl thioether substances, Production pathway}, - pages = {118443}, -} - -@Book{yang2022yin, - booktitle = {"十三五"水体污染控制与治理科技重大专项重点图书}, - title = {饮用水嗅味控制与管理技术指南}, - author = {杨敏 and 于建伟 and 苏命 and 等}, - year = 2022, - publisher = {中国建筑工业出版社}, - pages = {1--72}, - url = {http://dx.doi.org/10.1007/978-1-4614-1365-3}, - isbn = {9787112277964} -} - -@Article{li2018morphospeciesdependent, - title = {Morphospecies-dependent disaggregation of colonies of the cyanobacterium Microcystis under high turbulent mixing}, - author = {Ming Li and Man Xiao and Pei Zhang and David P. Hamilton}, - year = 2018, - journal = {Water Research}, - publisher = {Elsevier {BV}}, - volume = 141, - pages = {340--348}, - url = {https://doi.org/10.1016/j.watres.2018.05.017}, - doi = {10.1016/j.watres.2018.05.017} -} - -@Article{liu2019response, - title = {Response of the eukaryotic plankton community to the cyanobacterial biomass cycle over 6 years in two subtropical reservoirs}, - author = {Lemian Liu and Huihuang Chen and Min Liu and Jun R. Yang and Peng Xiao and David M. Wilkinson and Jun Yang}, - year = 2019, - journal = {The {ISME} Journal}, - publisher = {Springer Science and Business Media {LLC}}, - volume = 13, - pages = {2196--2208}, - url = {https://doi.org/10.1038/s41396-019-0417-9}, - doi = {10.1038/s41396-019-0417-9}, - number = 9} - -@Article{shi2022gene, - title = {Gene expression pattern of microbes associated with large cyanobacterial colonies for a whole year in Lake Taihu}, - author = {Limei Shi and Yuanfeng Cai and Shengling Gao and Min Zhang and Feizhou Chen and Xiaoli Shi and Yang Yu and Yaping Lu and Qinglong L. Wu}, - year = 2022, - journal = {Water Research}, - publisher = {Elsevier {BV}}, - volume = 223, - pages = 118958, - url = {https://doi.org/10.1016/j.watres.2022.118958}, - doi = {10.1016/j.watres.2022.118958} -} - -@Article{wu2023geographic, - title = {Geographic characteristics and environmental variables determine the diversities and assembly of the algal communities in interconnected river-lake system}, - author = {Shanghua Wu and Yuzhu Dong and Thorsten Stoeck and Shijie Wang and Haonan Fan and Yaxin Wang and Xuliang Zhuang}, - year = 2023, - journal = {Water Research}, - publisher = {Elsevier {BV}}, - volume = 233, - pages = 119792, - url = {https://doi.org/10.1016/j.watres.2023.119792}, - doi = {10.1016/j.watres.2023.119792} -} - -@Article{isabwe2022riverine, - title = {Riverine bacterioplankton and phytoplankton assembly along an environmental gradient induced by urbanization}, - author = {Alain Isabwe and Jun R. Yang and Yongming Wang and David M. Wilkinson and Emily B. Graham and Huihuang Chen and Jun Yang}, - year = 2022, - journal = {Limnology and Oceanography}, - publisher = {Wiley}, - volume = 67, - pages = {1943--1958}, - url = {https://doi.org/10.1002/lno.12179}, - doi = {10.1002/lno.12179}, - number = 9} - -@Article{guo2023photodegradation, - title = {Photodegradation of organic micropollutants in aquatic environment: Importance, factors and processes}, - author = {Zhongyu Guo and Dilini Kodikara and Luthfia Shofi Albi and Yuta Hatano and Guo Chen and Chihiro Yoshimura and Jieqiong Wang}, - year = 2023, - journal = {Water Research}, - publisher = {Elsevier {BV}}, - volume = 231, - pages = 118236, - url = {https://doi.org/10.1016/j.watres.2022.118236}, - doi = {10.1016/j.watres.2022.118236} -} - -@Article{guo2018physiological, - title = {Physiological changes of submerged macrophytes in response to a floating filamentous green algae bloom in clear-water conditions}, - author = {Liangliang Guo and Liangliang Dai and Kai Yang and Dunhai Li and Genbao Li}, - year = 2018, - journal = {Journal of Oceanology and Limnology}, - publisher = {Springer Science and Business Media {LLC}}, - volume = 36, - pages = {1604--1614}, - url = {https://doi.org/10.1007/s00343-018-7139-0}, - doi = {10.1007/s00343-018-7139-0}, - number = 5} - -@Article{myers1962characterization, - title = {Characterization of surface roughness}, - author = {N.O. Myers}, - year = 1962, - journal = {Wear}, - publisher = {Elsevier {BV}}, - volume = 5, - pages = {182--189}, - url = {https://doi.org/10.1016/0043-1648%2862%2990002-9}, - doi = {10.1016/0043-1648(62)90002-9}, - number = 3} - -@Article{dzialowski2011effects, - title = {Effects of non-algal turbidity on cyanobacterial biomass in seven turbid Kansas reservoirs}, - author = {Andrew R. Dzialowski and Val H. Smith and Shih-Hsien Wang and Michael C. Martin and F. deNoyelles Jr.}, - year = 2011, - journal = {Lake and Reservoir Management}, - publisher = {Informa {UK} Limited}, - volume = 27, - pages = {6--14}, - url = {https://doi.org/10.1080/07438141.2011.551027}, - doi = {10.1080/07438141.2011.551027}, - number = 1} - -@Article{lurling2015evaluation, - title = {Evaluation of several end-of-pipe measures proposed to control cyanobacteria}, - author = {Miquel Lürling and Guido Waajen and Lisette N. de Senerpont Domis}, - year = 2015, - journal = {Aquatic Ecology}, - publisher = {Springer Science and Business Media {LLC}}, - volume = 50, - pages = {499--519}, - url = {https://doi.org/10.1007/s10452-015-9563-y}, - doi = {10.1007/s10452-015-9563-y}, - number = 3} - -@Article{cloern1987turbidity, - title = {Turbidity as a control on phytoplankton biomass and productivity in estuaries}, - author = {James E. Cloern}, - year = 1987, - journal = {Continental Shelf Research}, - publisher = {Elsevier {BV}}, - volume = 7, - pages = {1367--1381}, - url = {https://doi.org/10.1016/0278-4343%2887%2990042-2}, - doi = {10.1016/0278-4343(87)90042-2}, - number = {11-12} -} - -@Article{gameiro2011light, - title = {Light control on phytoplankton production in a shallow and turbid estuarine system}, - author = {Carla Gameiro and Juan Zwolinski and Vanda Brotas}, - year = 2011, - journal = {Hydrobiologia}, - publisher = {Springer Science and Business Media {LLC}}, - volume = 669, - pages = {249--263}, - url = {https://doi.org/10.1007/s10750-011-0695-3}, - doi = {10.1007/s10750-011-0695-3}, - number = 1} - -@Article{may2003effects, - title = {Effects of spatial and temporal variability of turbidity on phytoplankton blooms}, - author = {CL May and JR Koseff and LV Lucas and JE Cloern and DH Schoellhamer}, - year = 2003, - journal = {Marine Ecology Progress Series}, - publisher = {Inter-Research Science Center}, - volume = 254, - pages = {111--128}, - url = {https://doi.org/10.3354/meps254111}, - doi = {10.3354/meps254111} -} - -@Article{northcote2005interaction, - title = {Interaction of Nutrients and Turbidity in the Control of Phytoplankton in a Large Western Canadian Lake Prior to Major Watershed Impoundments}, - author = {T. G. Northcote and F. R. Pick and D. B. Fillion and S. P. Salter}, - year = 2005, - journal = {Lake and Reservoir Management}, - publisher = {Informa {UK} Limited}, - volume = 21, - pages = {261--276}, - url = {https://doi.org/10.1080/07438140509354434}, - doi = {10.1080/07438140509354434}, - number = 3} - -@Article{wang2019phytoplankton, - title = {Phytoplankton Blooms off a High Turbidity Estuary: A Case Study in the Changjiang River Estuary}, - author = {Yihe Wang and Hui Wu and Jun Lin and Jianrong Zhu and Wenxia Zhang and Chao Li}, - year = 2019, - journal = {Journal of Geophysical Research: Oceans}, - publisher = {American Geophysical Union ({AGU})}, - volume = 124, - pages = {8036--8059}, - url = {https://doi.org/10.1029/2019jc015343}, - doi = {10.1029/2019jc015343}, - number = 11} - -@Article{bleiker1997light, - title = {Light climate as the key factor controlling the spring dynamics of phytoplankton in Lake Zürich}, - author = {Willi Bleiker and Ferdinand Schanz}, - year = 1997, - journal = {Aquatic Sciences}, - publisher = {Springer Science and Business Media {LLC}}, - volume = 59, - pages = {135--157}, - url = {https://doi.org/10.1007/bf02523177}, - doi = {10.1007/bf02523177}, - number = 2} - -@Article{park2017light, - title = {Light availability rather than Fe controls the magnitude of massive phytoplankton bloom in the Amundsen Sea polynyas, Antarctica}, - author = {Jisoo Park and Fedor I. Kuzminov and Benjamin Bailleul and Eun Jin Yang and SangHoon Lee and Paul G. Falkowski and Maxim Y. Gorbunov}, - year = 2017, - journal = {Limnology and Oceanography}, - publisher = {Wiley}, - volume = 62, - pages = {2260--2276}, - url = {https://doi.org/10.1002/lno.10565}, - doi = {10.1002/lno.10565}, - number = 5} - -@Article{yamamichi2018a, - title = {A shady phytoplankton paradox: when phytoplankton increases under low light}, - author = {Masato Yamamichi and Takehiro Kazama and Kotaro Tokita and Izumi Katano and Hideyuki Doi and Takehito Yoshida and Nelson G. Hairston and Jotaro Urabe}, - year = 2018, - journal = {Proceedings of the Royal Society B: Biological Sciences}, - publisher = {The Royal Society}, - volume = 285, - pages = 20181067, - url = {https://doi.org/10.1098/rspb.2018.1067}, - doi = {10.1098/rspb.2018.1067}, - number = 1882} - -@Article{feng2023evaluation, - title = {Evaluation of environmental factors and microbial community structure in an important drinking-water reservoir across seasons}, - author = {Jie Feng and Letian Zhou and Xiaochao Zhao and Jianyi Chen and Zhi Li and Yongfeng Liu and Lei Ou and Zixin Xie and Miao Wang and Xue Yin and Xin Zhang and Yan Li and Mingjie Luo and Lidong Zeng and Qin Yan and Linshen Xie and Lei Sun}, - year = 2023, - journal = {Frontiers in Microbiology}, - publisher = {Frontiers Media {SA}}, - volume = 14, - url = {https://doi.org/10.3389/fmicb.2023.1091818}, - doi = {10.3389/fmicb.2023.1091818} -} - -@Article{xu2017developing, - title = {Developing an integrated 3D-hydrodynamic and emerging contaminant model for assessing water quality in a Yangtze Estuary Reservoir}, - author = {Cong Xu and Jingjie Zhang and Xiaowei Bi and Zheng Xu and Yiliang He and Karina Yew-Hoong Gin}, - year = 2017, - journal = {Chemosphere}, - publisher = {Elsevier {BV}}, - volume = 188, - pages = {218--230}, - url = {https://doi.org/10.1016/j.chemosphere.2017.08.121}, - doi = {10.1016/j.chemosphere.2017.08.121} -} - -@Article{yang2023trophic, - title = {Trophic status observations for Honghu Lake in China from 2000 to 2021 using Landsat Satellites}, - author = {Fan Yang and Baoyin He and Yadong Zhou and Wen Li and Xiaoyang Zhang and Qi Feng}, - year = 2023, - journal = {Ecological Indicators}, - publisher = {Elsevier {BV}}, - volume = 146, - pages = 109898, - url = {https://doi.org/10.1016/j.ecolind.2023.109898}, - doi = {10.1016/j.ecolind.2023.109898} -} - -@Article{cheng2022the, - title = {The Correlations of Plasma Liver-Type Fatty Acid-Binding Protein with Amyloid-$\upbeta$ and Tau Levels in Patients with Alzheimer's Disease}, - author = {Yuan Cheng and Jie-Ming Jian and Chen-Yang He and Jun-Rong Ren and Man-Yu Xu and Wang-Sheng Jin and Cheng-Rong Tan and Gui-Hua Zeng and Ying-Ying Shen and Dong-Wan Chen and Hui-Yun Li and Xu Yi and Yuan Zhang and Fan Zeng and Yan-Jiang Wang}, - year = 2022, - journal = {Journal of Alzheimer{\textquotesingle}s Disease}, - publisher = {{IOS} Press}, - volume = 88, - pages = {375--383}, - url = {https://doi.org/10.3233/jad-220126}, - doi = {10.3233/jad-220126}, - number = 1, - editor = {Jin-Tai Yu} -} - -@Article{xiao2022plasma, - title = {Plasma A$\upbeta$42/A$\upbeta$40 and p-tau181 Predict Long-Term Clinical Progression in a Cohort with Amnestic Mild Cognitive Impairment}, - author = {Zhenxu Xiao and Wanqing Wu and Xiaoxi Ma and Xiaoniu Liang and Jiaying Lu and Li Zheng and Saineng Ding and Qiqi Lei and Jianfeng Luo and Keliang Chen and Ding Ding and Qianhua Zhao}, - year = 2022, - journal = {Clinical Chemistry}, - publisher = {Oxford University Press ({OUP})}, - volume = 68, - pages = {1552--1563}, - url = {https://doi.org/10.1093/clinchem/hvac149}, - doi = {10.1093/clinchem/hvac149}, - number = 12} - -@Article{kerneis1995the, - title = {The effects of water residence time on the biological quality in a distribution network}, - author = {Alain Kerneïs and Frederique Nakache and Alain Deguin and Max Feinberg}, - year = 1995, - journal = {Water Research}, - publisher = {Elsevier {BV}}, - volume = 29, - pages = {1719--1727}, - url = {https://doi.org/10.1016/0043-1354%2894%2900323-y}, - doi = {10.1016/0043-1354(94)00323-y}, - number = 7} - -@Article{su2023control, - title = {Control of {{MIB}}-producing cyanobacteria based upon turbidity management in an estuary reservoir}, - author = {Ming Su and Yiping Zhu and Michael Burch and Jinping Lu and Tengxin Cao and Yufan Ai and Jianwei Yu and Min Yang}, - year = 2023, - journal = {Unpublished}, - publisher = {Unpublished}, - volume = 0, - pages = {0--0}, - number = 0} - -@Article{wierenga2022complex, - title = {Complex effects of chytrid parasites on the growth of the cyanobacterium {{\textit{Planktothrix rubescens}}} across interacting temperature and light gradients}, - author = {Joren Wierenga and Mridul K. Thomas and Ravi Ranjan and Bas W. Ibelings}, - year = 2022, - journal = {{ISME} Communications}, - publisher = {Springer Science and Business Media {LLC}}, - volume = 2, - url = {https://doi.org/10.1038/s43705-022-00178-5}, - doi = {10.1038/s43705-022-00178-5}, - number = 1} - -@Article{kohler1992influence, - title = {Influence of turbulent mixing on growth and primary production of Microcystis aeruginosa in the hypertrophic Bautzen Reservoir}, - author = {Jan Köhler}, - year = 1992, - journal = {Archiv für Hydrobiologie}, - publisher = {Schweizerbart}, - volume = 123, - pages = {413--429}, - url = {https://doi.org/10.1127/archiv-hydrobiol/123/1992/413}, - doi = {10.1127/archiv-hydrobiol/123/1992/413}, - number = 4} - -@Article{ibelings1991microcystis, - title = {Microcystis changes its buoyancy in response to the average irradiance in the surface mixed layer}, - author = {Ibelings, Bas W. and Mur, Luuc R. and Kinsman, Robin and Walsby, Anthony E.}, - year = 1991, - journal = {Archiv f{\"u}r Hydrobiologie}, - publisher = {Schweizerbart Science Publishers}, - volume = 120, - pages = {385--401}, - url = {http://dx.doi.org/10.1127/archiv-hydrobiol/120/1991/385}, - number = 4, - doi = {10.1127/archiv-hydrobiol/120/1991/385}, - address = {Stuttgart, Germany} -} - -@Article{qin2023eutrophication, - title = {Eutrophication control of large shallow lakes in China}, - author = {Boqiang Qin and Yunlin Zhang and Guangwei Zhu and Guang Gao}, - year = 2023, - journal = {Science of The Total Environment}, - publisher = {Elsevier {BV}}, - volume = 881, - pages = 163494, - url = {https://doi.org/10.1016/j.scitotenv.2023.163494}, - doi = {10.1016/j.scitotenv.2023.163494} -} - -@Article{ha2021prediction, - title = {Prediction of Yangtze River streamflow based on deep learning neural network with El Ni{\~{n}}o-Southern Oscillation}, - author = {Si Ha and Darong Liu and Lin Mu}, - year = 2021, - journal = {Scientific Reports}, - publisher = {Springer Science and Business Media {LLC}}, - volume = 11, - url = {https://doi.org/10.1038/s41598-021-90964-3}, - doi = {10.1038/s41598-021-90964-3}, - number = 1} - -@Article{gerber1983volatile, - title = {Volatile Substances from Actinomycetes: Their Role in the Odor Pollution of Water}, - author = {Nancy N Gerber}, - year = 1983, - journal = {Water Science and Technology}, - publisher = {{IWA} Publishing}, - volume = 15, - pages = {115--125}, - url = {https://doi.org/10.2166/wst.1983.0136}, - doi = {10.2166/wst.1983.0136}, - number = {6-7} -} - -@Article{yang2023impact, - title = {Impact of submerged macrophytes on growth and 2-{MIB} release risk of {{\textit{Pseudanabaena}}} sp.: From field monitoringa to cultural experiments}, - author = {Changtao Yang and Xiaobing Shen and Xinyi Shi and Zhijie Cui and Jing Nan and Haiming Lu and Jianhua Li and Qinghui Huang}, - year = 2023, - journal = {Journal of Hazardous Materials}, - publisher = {Elsevier {BV}}, - volume = 442, - pages = 130052, - url = {https://doi.org/10.1016/j.jhazmat.2022.130052}, - doi = {10.1016/j.jhazmat.2022.130052} -} - -@Article{jeppesen2005lakeresponses, - title = {Lake responses to reduced nutrient loading--an analysis of contemporary long-term data from 35 case studies}, - author = {Jeppesen, Erik and S{\o}ndergaard, Martin and Jensen, Jens Peder and Havens, Karl E and Anneville, Orlane and Carvalho, Laurence and Coveney, Michael F and Deneke, Rainer and Dokulil, Martin T and Foy, BOB and others}, - journal = {Freshwater biology}, - volume = {50}, - number = {10}, - pages = {1747--1771}, - year = {2005}, - publisher = {Wiley Online Library}, - doi = {https://doi.org/10.1111/j.1365-2427.2005.01415.x}, - url = {https://onlinelibrary.wiley.com/doi/abs/10.1111/j.1365-2427.2005.01415.x}, - eprint = {https://onlinelibrary.wiley.com/doi/pdf/10.1111/j.1365-2427.2005.01415.x} -} - -@Article{fastner2015combating, - title = {Combating cyanobacterial proliferation by avoiding or treating inflows with high P load experiences from eight case studies}, - author = {Jutta Fastner and Sally Abella and Arni Litt and Giuseppe Morabito and Lajos Vörös and K{\'{a}}roly P{\'{a}}lffy and Dietmar Straile and Reiner Kümmerlin and David Matthews and M. Geoff Phillips and Ingrid Chorus}, - year = 2015, - journal = {Aquatic Ecology}, - publisher = {Springer Science and Business Media {LLC}}, - volume = 50, - pages = {367--383}, - url = {https://doi.org/10.1007/s10452-015-9558-8}, - doi = {10.1007/s10452-015-9558-8}, - number = 3} - -@Article{espinosa2020water, - title = {Water Flow and Light Availability Influence on Intracellular Geosmin Production in River Biofilms}, - author = {Carmen Espinosa and Meritxell Abril and Helena Guasch and N{\'{u}}ria Pou and Lorenzo Proia and Marta Ricart and Marc Ordeix and Laia Llenas}, - year = 2020, - journal = {Frontiers in Microbiology}, - publisher = {Frontiers Media {SA}}, - volume = 10, - url = {https://doi.org/10.3389/fmicb.2019.03002}, - doi = {10.3389/fmicb.2019.03002} -} - -@Article{jin2023suspended, - title = {Suspended phosphorus sustains algal blooms in a dissolved phosphorus-depleted lake}, - author = {Zuxue Jin and Peng Liao and Deb P Jaisi and Dengjun Wang and Jingfu Wang and Heng Wang and Shihao Jiang and Jiaojiao Yang and Shuoru Qiu and Jingan Chen}, - year = 2023, - journal = {Water Research}, - publisher = {Elsevier {BV}}, - volume = 241, - pages = 120134, - url = {https://doi.org/10.1016/j.watres.2023.120134}, - doi = {10.1016/j.watres.2023.120134} -} - -@Article{tee2020tools, - title = {Tools for successful proliferation: diverse strategies of nutrient acquisition by a benthic cyanobacterium}, - author = {H. S. Tee and D. Waite and L. Payne and M. Middleditch and S. Wood and K. M. Handley}, - year = 2020, - journal = {The {ISME} Journal}, - publisher = {Springer Science and Business Media {LLC}}, - volume = 14, - pages = {2164--2178}, - url = {https://doi.org/10.1038/s41396-020-0676-5}, - doi = {10.1038/s41396-020-0676-5}, - number = 8} - -@Article{karsten1996growth, - title = {Growth and organic osmolytes of geographically different isolates of microcoleus chthonoplastes (cyanobacteria) from benthic microbial mats: response to salinity change1}, - author = {Karsten, Ulf}, - year = 1996, - journal = {Journal of Phycology}, - volume = 32, - pages = {501--506}, - url = {https://onlinelibrary.wiley.com/doi/abs/10.1111/j.0022-3646.1996.00501.x}, - number = 4, - doi = {https://doi.org/10.1111/j.0022-3646.1996.00501.x}, - eprint = {https://onlinelibrary.wiley.com/doi/pdf/10.1111/j.0022-3646.1996.00501.x} -} - -@Article{cai2017geosmin, - title = {Geosmin production and polyphasic characterization of {{\textit{Oscillatoria limosa}}} Agardh ex Gomont isolated from the open canal of a large drinking water system in Tianjin City, China}, - author = {Fangfang Cai and Gongliang Yu and Kai Zhang and Youxin Chen and Qiang Li and Yiming Yang and Jinlin Xie and Yilang Wang and Renhui Li}, - year = 2017, - journal = {Harmful Algae}, - publisher = {Elsevier {BV}}, - volume = 69, - pages = {28--37}, - url = {https://doi.org/10.1016/j.hal.2017.09.006}, - doi = {10.1016/j.hal.2017.09.006} -} - -@Article{hesse2001consequences, - title = {Consequences of impaired microcystin production for light-dependent growth and pigmentation of Microcystis aeruginosa {PCC} 7806}, - author = {Karina Hesse and Elke Dittmann and Thomas B{\~{A}}{\textparagraph}rner}, - year = 2001, - journal = {{FEMS} Microbiology Ecology}, - publisher = {Oxford University Press ({OUP})}, - volume = 37, - pages = {39--43}, - url = {https://doi.org/10.1111/j.1574-6941.2001.tb00851.x}, - doi = {10.1111/j.1574-6941.2001.tb00851.x}, - number = 1} - -@Article{marinho2013light, - title = {Light and Phosphate Competition Between Cylindrospermopsis raciborskii and Microcystis aeruginosa is Strain Dependent}, - author = {Marcelo Manzi Marinho and Maria Bet{\^{a}}nia Gon{\c{c}}alves Souza and Miquel Lürling}, - year = 2013, - journal = {Microbial Ecology}, - publisher = {Springer Science and Business Media {LLC}}, - volume = 66, - pages = {479--488}, - url = {https://doi.org/10.1007/s00248-013-0232-1}, - doi = {10.1007/s00248-013-0232-1}, - number = 3} - -@Article{li2014biochemical, - title = {Biochemical composition of Microcystis aeruginosa related to specific growth rate: insight into the effects of abiotic factors}, - author = {Ming Li and Philip Nti Nkrumah and Man Xiao}, - year = 2014, - journal = {Inland Waters}, - publisher = {Taylor & Francis}, - volume = 4, - pages = {357--362}, - url = { - https://www.tandfonline.com/doi/abs/10.5268/IW-4.4.710 - }, - number = 4, - doi = {10.5268/IW-4.4.710}, - eprint = { - https://www.tandfonline.com/doi/pdf/10.5268/IW-4.4.710 - } -} - -@Article{thomas2015effects, - title = {Effects of temperature and nitrogen availability on the growth of invasive and native cyanobacteria}, - author = {Mridul K. Thomas and Elena Litchman}, - year = 2015, - journal = {Hydrobiologia}, - publisher = {Springer Science and Business Media {LLC}}, - volume = 763, - pages = {357--369}, - url = {https://doi.org/10.1007/s10750-015-2390-2}, - doi = {10.1007/s10750-015-2390-2}, - number = 1} - -@Article{wiedner2003effects, - title = {Effects of Light on the Microcystin Content of {{\textit{Microcystis}}} Strain {PCC} 7806}, - author = {Claudia Wiedner and Petra M. Visser and Jutta Fastner and James S. Metcalf and Geoffrey A. Codd and Luuc R. Mur}, - year = 2003, - journal = {Applied and Environmental Microbiology}, - publisher = {American Society for Microbiology}, - volume = 69, - pages = {1475--1481}, - url = {https://doi.org/10.1128/aem.69.3.1475-1481.2003}, - doi = {10.1128/aem.69.3.1475-1481.2003}, - number = 3} - -@Article{wu2011phenotype, - title = {Phenotype and temperature affect the affinity for dissolved inorganic carbon in a cyanobacterium Microcystis}, - author = {Xinghua Wu and Zhongxing Wu and Lirong Song}, - year = 2011, - journal = {Hydrobiologia}, - publisher = {Springer Science and Business Media {LLC}}, - volume = 675, - pages = {175--186}, - url = {https://doi.org/10.1007/s10750-011-0815-0}, - doi = {10.1007/s10750-011-0815-0}, - number = 1} - -@Article{briand2004cylindrospermopsis, - title = {{CYLINDROSPERMOPSIS} {RACIBORSKII} ({CYANOBACTERIA}) {INVASION} {AT} {MID}-{LATITUDES}: {SELECTION}, {WIDE} {PHYSIOLOGICAL} {TOLERANCE}, {ORGLOBALWARMING}?1}, - author = {Jean-Fran{\c{c}}ois Briand and Christophe Leboulanger and Jean-Fran{\c{c}}ois Humbert and C{\'{e}}cile Bernard and Philippe Dufour}, - year = 2004, - journal = {Journal of Phycology}, - publisher = {Wiley}, - volume = 40, - pages = {231--238}, - url = {https://doi.org/10.1111/j.1529-8817.2004.03118.x}, - doi = {10.1111/j.1529-8817.2004.03118.x}, - number = 2} - -@Article{saker2000the, - title = {The effect of temperature on growth and cylindrospermopsin content of seven isolates of Cylindrospermopsis raciborskii (Nostocales, Cyanophyceae) from water bodies in northern Australia}, - author = {Martin L. Saker and Dilwyn J. Griffiths}, - year = 2000, - journal = {Phycologia}, - publisher = {Informa {UK} Limited}, - volume = 39, - pages = {349--354}, - url = {https://doi.org/10.2216/i0031-8884-39-4-349.1}, - doi = {10.2216/i0031-8884-39-4-349.1}, - number = 4} - -@Article{willis2016intraspecific, - title = {Intraspecific variation in growth, morphology and toxin quotas for the cyanobacterium, Cylindrospermopsis raciborskii}, - author = {Anusuya Willis and Ann W. Chuang and Jason N. Woodhouse and Brett A. Neilan and Michele A. Burford}, - year = 2016, - journal = {Toxicon}, - publisher = {Elsevier {BV}}, - volume = 119, - pages = {307--310}, - url = {https://doi.org/10.1016/j.toxicon.2016.07.005}, - doi = {10.1016/j.toxicon.2016.07.005} -} - -@Article{nicklisch1999competition, - title = {Competition between the Cyanobacterium Limnothrix redekei and Some Spring Species of Diatoms under P-Limitation}, - author = {Nicklisch, Andreas}, - year = 1999, - journal = {International Review of Hydrobiology}, - volume = 84, - pages = {233--241}, - url = {https://onlinelibrary.wiley.com/doi/abs/10.1002/iroh.199900024}, - number = 3, - doi = {https://doi.org/10.1002/iroh.199900024}, - eprint = {https://onlinelibrary.wiley.com/doi/pdf/10.1002/iroh.199900024} -} - -@Article{nicklisch1992the, - title = {The interaction of irradiance and temperature on the growth rate of {{\textit{Limnothrix redekei}}} and its mathematical description}, - author = {Nicklisch, Andreas}, - year = 1992, - journal = {Algological Studies/Archiv f{\"u}r Hydrobiologie, Supplement Volumes}, - publisher = {Schweizerbart Science Publishers}, - volume = 63, - pages = {1--18}, - url = {https://www.schweizerbart.de/papers/archiv_algolstud/detail/63/66818/The_interaction_of_irradiance_and_temperature_on_the_growth_rate_of_Limnothrix_redekei_and_its_mathematical_description}, - address = {Stuttgart, Germany} -} - -@Article{tiwari2001growth, - title = {Growth potential and biocide tolerance of non-heterocystous filamentous cyanobacterial isolates from rice fields of Uttar Pradesh, India}, - author = {O. Tiwari and R. Prasanna and A. Yadav and Dhar Wattal and P. Singh}, - year = 2001, - journal = {Biology and Fertility of Soils}, - publisher = {Springer Science and Business Media {LLC}}, - volume = 34, - pages = {291--295}, - url = {https://doi.org/10.1007/s003740100402}, - doi = {10.1007/s003740100402}, - number = 4} - -@Article{shatwell2012temperature, - title = {Temperature and photoperiod effects on phytoplankton growing under simulated mixed layer light fluctuations}, - author = {Tom Shatwell and Andreas Nicklisch and Jan Köhler}, - year = 2012, - journal = {Limnology and Oceanography}, - publisher = {Wiley}, - volume = 57, - pages = {541--553}, - url = {https://doi.org/10.4319/lo.2012.57.2.0541}, - doi = {10.4319/lo.2012.57.2.0541}, - number = 2} - -@Article{nicklisch1998growth, - title = {Growth and light absorption of some planktonic cyanobacteria, diatoms and Chlorophyceae under simulated natural light fluctuations}, - author = {Andreas Nicklisch}, - year = 1998, - journal = {Journal of Plankton Research}, - publisher = {Oxford University Press ({OUP})}, - volume = 20, - pages = {105--119}, - url = {https://doi.org/10.1093/plankt/20.1.105}, - doi = {10.1093/plankt/20.1.105}, - number = 1} - -@Article{nicklisch2007analysis, - title = {Analysis and modelling of the interactive effects of temperature and light on phytoplankton growth and relevance for the spring bloom}, - author = {A. Nicklisch and T. Shatwell and J. Kohler}, - year = 2007, - journal = {Journal of Plankton Research}, - publisher = {Oxford University Press ({OUP})}, - volume = 30, - pages = {75--91}, - url = {https://doi.org/10.1093/plankt/fbm099}, - doi = {10.1093/plankt/fbm099}, - number = 1} - -@Article{xiao2020are, - title = {Are laboratory growth rate experiments relevant to explaining bloom-forming cyanobacteria distributions at global scale?}, - author = {Man Xiao and David P. Hamilton and Katherine R. O'Brien and Matthew P. Adams and Anusuya Willis and Michele A. Burford}, - year = 2020, - journal = {Harmful Algae}, - publisher = {Elsevier {BV}}, - volume = 92, - pages = 101732, - url = {https://doi.org/10.1016/j.hal.2019.101732}, - doi = {10.1016/j.hal.2019.101732} -} - -@Article{vincent1979growth, - title = {Growth of blue-green algae in the Manukau (New Zealand) oxidation ponds{\textemdash}{II}. Experimental studies on algal interaction}, - author = {W.F. Vincent and W.B. Silvester}, - year = 1979, - journal = {Water Research}, - publisher = {Elsevier {BV}}, - volume = 13, - pages = {717--723}, - url = {https://doi.org/10.1016/0043-1354%2879%2990235-5}, - doi = {10.1016/0043-1354(79)90235-5}, - number = 8} - -@Article{sabour2009growth, - title = {Growth responses of {{\textit{Microcystis ichthyoblabe}}} Kützing and {{\textit{Anabaena aphanizomenoides}}} Forti (cyanobacteria) under different nitrogen and phosphorus conditions}, - author = {Brahim Sabour and Mohammed Loudiki and Vitor Vasconcelos}, - year = 2009, - journal = {Chemistry and Ecology}, - publisher = {Informa {UK} Limited}, - volume = 25, - pages = {337--344}, - url = {https://doi.org/10.1080/02757540903193130}, - doi = {10.1080/02757540903193130}, - number = 5} - -@Article{mehnert2010competitiveness, - title = {Competitiveness of invasive and native cyanobacteria from temperate freshwaters under various light and temperature conditions}, - author = {G. Mehnert and F. Leunert and S. Cires and K. D. Johnk and J. Rucker and B. Nixdorf and C. Wiedner}, - year = 2010, - journal = {Journal of Plankton Research}, - publisher = {Oxford University Press ({OUP})}, - volume = 32, - pages = {1009--1021}, - url = {https://doi.org/10.1093/plankt/fbq033}, - doi = {10.1093/plankt/fbq033}, - number = 7} - -@Article{novak1985inorganic, - title = {Inorganic carbon limited growth kinetics of some freshwater algae}, - author = {John T. Novak and David E. Brune}, - year = 1985, - journal = {Water Research}, - publisher = {Elsevier {BV}}, - volume = 19, - pages = {215--225}, - url = {https://doi.org/10.1016/0043-1354%2885%2990203-9}, - doi = {10.1016/0043-1354(85)90203-9}, - number = 2} - -@Article{rapala1993anatoxina, - title = {Anatoxin-a concentration {inAnabaena} {andAphanizomenon} under different environmental conditions and comparison of growth by toxic and non-{toxicAnabaena}-strains {\textemdash} a laboratory study}, - author = {Jarkko Rapala and Kaarina Sivonen and Raija Luukkainen and Seppo I. Niemelä}, - year = 1993, - journal = {Journal of Applied Phycology}, - publisher = {Springer Science and Business Media {LLC}}, - volume = 5, - pages = {581--591}, - url = {https://doi.org/10.1007/bf02184637}, - doi = {10.1007/bf02184637}, - number = 6} - -@Article{ahlgren1987temperature, - title = {Temperature Functions in Biology and Their Application to Algal Growth Constants}, - author = {Gunnel Ahlgren}, - year = 1987, - journal = {Oikos}, - publisher = {{JSTOR}}, - volume = 49, - pages = 177, - url = {https://doi.org/10.2307/3566025}, - doi = {10.2307/3566025}, - number = 2} - -@Article{belkoura1994caracteristiques, - title = {Caractéristiques photosynthétiques de Chlorella sorokiniana Shihira & Krauss, en relation avec l'intensité lumineuse et la température. Corrélation avec le taux de croissance}, - author = {Belkoura, M. and Dauta, A.}, - year = 1994, - journal = {Annales de Limnologie - International Journal of Limnology}, - publisher = {EDP Sciences}, - volume = 30, - pages = {3–9}, - doi = {10.1051/limn/1994004}, - number = 1} - -@Article{benider2001interaction, - title = {Interaction des facteurs héliothermiques sur la croissance de trois espèces du genre Scenedesmus}, - author = {Benider, A. and Tahiri, M. and Belkoura, M. and Dauta, A.}, - year = 2001, - journal = {Annales de Limnologie - International Journal of Limnology}, - publisher = {EDP Sciences}, - volume = 37, - pages = {257–266}, - doi = {10.1051/limn/2001022}, - number = 4} - -@Article{bouarab2002croissance, - title = {Croissance en autotrophie et en mixotrophie de la microalgue {{\textit{Micractinium pusillum}}} Fres. isolée d´un lagunage naturel : influence de la lumière et de la température}, - author = {Bouarab, L. and Loudiki, M. and Dauta, A.}, - year = 2002, - journal = "Journal of Water Science", - publisher = {Université du Québec - INRS-Eau, Terre et Environnement (INRS-ETE)}, - volume = 15, - pages = {73--86}, - number = 1, - doi = {https://doi.org/10.7202/705437ar} -} - -@Article{butterwick2004diversity, - title = {Diversity in the influence of temperature on the growth rates of freshwater algae, and its ecological relevance}, - author = {C. Butterwick and S. I. Heaney and J. F. Talling}, - year = 2004, - journal = {Freshwater Biology}, - publisher = {Wiley}, - volume = 50, - pages = {291--300}, - url = {https://doi.org/10.1111/j.1365-2427.2004.01317.x}, - doi = {10.1111/j.1365-2427.2004.01317.x}, - number = 2} - -@Article{christov2001influence, - title = {Influence of Temperature and Methyl Jasmonate on Scenedesmus Incrassulatus}, - author = {C. Christov and I. Pouneva and M. Bozhkova and T. Toncheva and S. Fournadzieva and T. Zafirova}, - year = 2001, - journal = {Biologia plantarum}, - publisher = {Institute of Experimental Botany}, - volume = 44, - pages = {367--371}, - url = {https://doi.org/10.1023/a%3A1012490610127}, - doi = {10.1023/a:1012490610127}, - number = 3} - -@Article{coesel1990growth, - title = {Growth responses of planktonic desmid species in a temperature-light gradient}, - author = {PETER F. M. COESEL and KLAASJAN WARDENAAR}, - year = 1990, - journal = {Freshwater Biology}, - publisher = {Wiley}, - volume = 23, - pages = {551--560}, - url = {https://doi.org/10.1111/j.1365-2427.1990.tb00294.x}, - doi = {10.1111/j.1365-2427.1990.tb00294.x}, - number = 3} - -@Article{coles2000effect, - title = {Effect of temperature on photosynthesis-light response and growth of four phytoplankton species isolated from a tidal freshwater river}, - author = {James F. Coles and R. Christian Jones}, - year = 2000, - journal = {Journal of Phycology}, - publisher = {Wiley}, - volume = 36, - pages = {7--16}, - url = {https://doi.org/10.1046/j.1529-8817.2000.98219.x}, - doi = {10.1046/j.1529-8817.2000.98219.x}, - number = 1} - -@Article{darienko2010ichloroidiumi, - title = {{{\textit{Chloroidium}}}, a common terrestrial coccoid green alga previously assigned to {{\textit{Chlorella}}} (Trebouxiophyceae, Chlorophyta)}, - author = {Tatyana Darienko and Lydia Gustavs and Opayi Mudimu and Cecilia Rad Menendez and Rhena Schumann and Ulf Karsten and Thomas Friedl and Thomas Pröschold}, - year = 2010, - journal = {European Journal of Phycology}, - publisher = {Informa {UK} Limited}, - volume = 45, - pages = {79--95}, - url = {https://doi.org/10.1080/09670260903362820}, - doi = {10.1080/09670260903362820}, - number = 1} - -@Article{dauta1990growth, - title = {Growth rate of four freshwater algae in relation to light and temperature}, - author = {Alain Dauta and Jean Devaux and Fran�oise Piquemal and Lhoussaine Boumnich}, - year = 1990, - journal = {Hydrobiologia}, - publisher = {Springer Science and Business Media {LLC}}, - volume = 207, - pages = {221--226}, - url = {https://doi.org/10.1007/bf00041459}, - doi = {10.1007/bf00041459}, - number = 1} - -@Article{fiolitakis1987deterministic, - title = {Deterministic interpretation of the temperature response of microbial growth}, - author = {Emmanuel Fiolitakis and Johan U. Grobbelaar and Eberhard Hegewald and Carl J. Soeder}, - year = 1987, - journal = {Biotechnology and Bioengineering}, - publisher = {Wiley}, - volume = 30, - pages = {541--547}, - url = {https://doi.org/10.1002/bit.260300411}, - doi = {10.1002/bit.260300411}, - number = 4} - -@Article{fujimoto1994effects, - title = {Effects of temperature change on algal growth}, - author = {Naoshi Fujimoto and Yuhei Inamori and Norio Sugiura and Ryuichi Sudo}, - year = 1994, - journal = {Environmental Technology}, - publisher = {Informa {UK} Limited}, - volume = 15, - pages = {497--500}, - url = {https://doi.org/10.1080/09593339409385455}, - doi = {10.1080/09593339409385455}, - number = 5} - -@Article{hanagata1992tolerance, - title = {Tolerance of microalgae to high {CO}2 and high temperature}, - author = {Nobutaka Hanagata and Toshifumi Takeuchi and Yoshiharu Fukuju and David J. Barnes and Isao Karube}, - year = 1992, - journal = {Phytochemistry}, - publisher = {Elsevier {BV}}, - volume = 31, - pages = {3345--3348}, - url = {https://doi.org/10.1016/0031-9422%2892%2983682-o}, - doi = {10.1016/0031-9422(92)83682-o}, - number = 10} - -@InCollection{hanagata1998tolerance, - title = {Tolerance of a green alga, Scenedesmus komarekii, to environmental extremes}, - author = {N. Hanagata and R. Matsukawa and M. Chihara and I. Karube}, - year = 1998, - booktitle = {Studies in Surface Science and Catalysis}, - publisher = {Elsevier}, - pages = {625--628}, - url = {https://doi.org/10.1016/s0167-2991%2898%2980837-9}, - doi = {10.1016/s0167-2991(98)80837-9} -} - -@Article{hodaifa2010influence, - title = {Influence of temperature on growth of Scenedesmus obliquus in diluted olive mill wastewater as culture medium}, - author = {Gassan Hodaifa and Ma Eugenia Mart{\'{\i}}nez and Sebasti{\'{a}}n S{\'{a}}nchez}, - year = 2010, - journal = {Engineering in Life Sciences}, - publisher = {Wiley}, - volume = 10, - pages = {257--264}, - url = {https://doi.org/10.1002/elsc.201000005}, - doi = {10.1002/elsc.201000005}, - number = 3} - -@Article{huisman1980the, - title = {The effect of temperature upon the toxicity of mercuric chloride to Scenedesmus acutus}, - author = {J. Huisman and H.J.G. Ten Hoopen and A. Fuchs}, - year = 1980, - journal = {Environmental Pollution Series A, Ecological and Biological}, - publisher = {Elsevier {BV}}, - volume = 22, - pages = {133--148}, - url = {https://doi.org/10.1016/0143-1471%2880%2990189-0}, - doi = {10.1016/0143-1471(80)90189-0}, - number = 2} - -@Article{komarek1969effect, - title = {Effect of temperature on the growth and variability of Scenedesmus quadricauda (Turp.) Breb}, - author = {Kom{\'a}rek, Ji{\v{r}}{\'\i} and Ruzicka, J}, - year = 1969, - journal = {Studies in phycology}, - publisher = {E. Schweizerbart'ache Verlagsbuchandlung Stuttgart}, - pages = {262--292} -} - -@Article{kratz1955nutrition, - title = {{NUTRITION} {AND} {GROWTH} {OF} {SEVERAL} {BLUE}-{GREEN} {ALGAE}}, - author = {William A. Kratz and Jack Myers}, - year = 1955, - journal = {American Journal of Botany}, - publisher = {Wiley}, - volume = 42, - pages = {282--287}, - url = {https://doi.org/10.1002/j.1537-2197.1955.tb11120.x}, - doi = {10.1002/j.1537-2197.1955.tb11120.x}, - number = 3} - -@Article{lee1985the, - title = {The effect of growth temperature on the bioenergetics of photosynthetic algal cultures}, - author = {Yuan-Kun Lee and Hai-Meng Tan and Choy-Sin Hew}, - year = 1985, - journal = {Biotechnology and Bioengineering}, - publisher = {Wiley}, - volume = 27, - pages = {555--561}, - url = {https://doi.org/10.1002/bit.260270502}, - doi = {10.1002/bit.260270502}, - number = 5} - -@Article{lehtimaki1997growth, - title = {Growth, nitrogen fixation, and nodularin production by two {Baltic Sea} cyanobacteria}, - author = {J Lehtimaki and P Moisander and K Sivonen and K Kononen}, - year = 1997, - journal = {Applied and Environmental Microbiology}, - publisher = {American Society for Microbiology}, - volume = 63, - pages = {1647--1656}, - url = {https://doi.org/10.1128/aem.63.5.1647-1656.1997}, - doi = {10.1128/aem.63.5.1647-1656.1997}, - number = 5} - -@Article{li2011integration, - title = {Integration of algae cultivation as biodiesel production feedstock with municipal wastewater treatment: Strains screening and significance evaluation of environmental factors}, - author = {Yecong Li and Wenguang Zhou and Bing Hu and Min Min and Paul Chen and Roger R. Ruan}, - year = 2011, - journal = {Bioresource Technology}, - publisher = {Elsevier {BV}}, - volume = 102, - pages = {10861--10867}, - url = {https://doi.org/10.1016/j.biortech.2011.09.064}, - doi = {10.1016/j.biortech.2011.09.064}, - number = 23} - -@Article{lodi2003nitrate, - title = {Nitrate and phosphate removal by Spirulina platensis}, - author = {A. Lodi and L. Binaghi and C. Solisio and A. Converti and M. Del Borghi}, - year = 2003, - journal = {Journal of Industrial Microbiology and Biotechnology}, - publisher = {Oxford University Press ({OUP})}, - volume = 30, - pages = {656--660}, - url = {https://doi.org/10.1007/s10295-003-0094-5}, - doi = {10.1007/s10295-003-0094-5}, - number = 11} - -@Article{lurling1999grazerinduced, - title = {GRAZER-INDUCED COLONY FORMATION IN SCENEDESMUS ACUTUS (CHLOROPHYCEAE): ECOMORPH EXPRESSION AT DIFFERENT TEMPERATURES}, - author = {Lürling, M. and Van Donk, E.}, - year = 1999, - journal = {Journal of Phycology}, - volume = 35, - pages = {1120--1126}, - url = {https://onlinelibrary.wiley.com/doi/abs/10.1046/j.1529-8817.1999.3561120.x}, - number = 6, - doi = {https://doi.org/10.1046/j.1529-8817.1999.3561120.x}, - eprint = {https://onlinelibrary.wiley.com/doi/pdf/10.1046/j.1529-8817.1999.3561120.x} -} - -@Article{malinskyrushansky2002physiological, - title = {Physiological characteristics of picophytoplankton, isolated from Lake Kinneret: responses to light and temperature}, - author = {N. Malinsky-Rushansky}, - year = 2002, - journal = {Journal of Plankton Research}, - publisher = {Oxford University Press ({OUP})}, - volume = 24, - pages = {1173--1183}, - url = {https://doi.org/10.1093/plankt/24.11.1173}, - doi = {10.1093/plankt/24.11.1173}, - number = 11} - -@Article{martnez1999influence, - title = {Influence of phosphorus concentration and temperature on growth and phosphorus uptake by the microalga Scenedesmus obliquus}, - author = {M.E. Mart{\'{\i}}nez and J.M. Jim{\'{e}}nez and F. El Yousfi}, - year = 1999, - journal = {Bioresource Technology}, - publisher = {Elsevier {BV}}, - volume = 67, - pages = {233--240}, - url = {https://doi.org/10.1016/s0960-8524%2898%2900120-5}, - doi = {10.1016/s0960-8524(98)00120-5}, - number = 3} - -@Article{mayo1997effects, - title = {Effects of temperature and {pH} on the kinetic growth of unialga {{\textit{Chlorella vulgaris}}} cultures containing bacteria}, - author = {Aloice W. Mayo}, - year = 1997, - journal = {Water Environment Research}, - publisher = {Wiley}, - volume = 69, - pages = {64--72}, - url = {https://doi.org/10.2175/106143097x125191}, - doi = {10.2175/106143097x125191}, - number = 1} - -@Article{moss1973the, - title = {The Influence of Environmental Factors on the Distribution of Freshwater Algae: An Experimental Study: {II}. The Role of {pH} and the Carbon Dioxide-Bicarbonate System}, - author = {Brian Moss}, - year = 1973, - journal = {The Journal of Ecology}, - publisher = {{JSTOR}}, - volume = 61, - pages = 157, - url = {https://doi.org/10.2307/2258925}, - doi = {10.2307/2258925}, - number = 1} - -@Article{nicklisch1983growth, - title = {Growth Kinetics {ofMicrocystis} aeruginosa ({KÜTZ}){KÜTZ} as a Basis for Modelling its Population Dynamics}, - author = {Andreas Nicklisch and Johannes-Günter Kohl}, - year = 1983, - journal = {Internationale Revue der gesamten Hydrobiologie und Hydrographie}, - publisher = {Wiley}, - volume = 68, - pages = {317--326}, - url = {https://doi.org/10.1002/iroh.19830680304}, - doi = {10.1002/iroh.19830680304}, - number = 3} - -@Article{ohkubo1991effects, - title = {Effects of Temperature and Illumination on the Growth of Blue-green Alga Microcystis viridis.}, - author = {Norio OHKUBO and Osami YAGI and Mitsumasa OKADA}, - year = 1991, - journal = {Japanese Journal of Limnology (Rikusuigaku Zasshi)}, - publisher = {The Japanese Society of Limnology}, - volume = 52, - pages = {255--261}, - url = {https://doi.org/10.3739/rikusui.52.255}, - doi = {10.3739/rikusui.52.255}, - number = 4} - -@Article{ong2010characterization, - title = {Characterization of the thermal-tolerant mutants of Chlorella sp. with high growth rate and application in outdoor photobioreactor cultivation}, - author = {Seow-Chin Ong and Chien-Ya Kao and Sheng-Yi Chiu and Ming-Ta Tsai and Chih-Sheng Lin}, - year = 2010, - journal = {Bioresource Technology}, - publisher = {Elsevier {BV}}, - volume = 101, - pages = {2880--2883}, - url = {https://doi.org/10.1016/j.biortech.2009.10.007}, - doi = {10.1016/j.biortech.2009.10.007}, - number = 8} - -@Article{saker1999cattle, - title = {Cattle mortality attributed to the toxic {cyanobacteriumCylindrospermopsis} raciborskii in an outback region of North Queensland}, - author = {M. L. Saker and A. D. Thomas and J. H. Norton}, - year = 1999, - journal = {Environmental Toxicology}, - publisher = {Wiley}, - volume = 14, - pages = {179--182}, - url = {https://doi.org/10.1002/%28sici%291522-7278%28199902%2914%3A1%3C179%3A%3Aaid-tox23%3E3.0.co%3B2-g}, - doi = {10.1002/(sici)1522-7278(199902)14:1<179::aid-tox23>3.0.co;2-g}, - number = 1} - -@Article{sanchez2008influence, - title = {Influence of culture conditions on the productivity and lutein content of the new strain Scenedesmus almeriensis}, - author = {J.F. S{\'{a}}nchez and J.M. Fern{\'{a}}ndez and F.G. Aci{\'{e}}n and A. Rueda and J. P{\'{e}}rez-Parra and E. Molina}, - year = 2008, - journal = {Process Biochemistry}, - publisher = {Elsevier {BV}}, - volume = 43, - pages = {398--405}, - url = {https://doi.org/10.1016/j.procbio.2008.01.004}, - doi = {10.1016/j.procbio.2008.01.004}, - number = 4} - -@Article{seki1981temperature, - title = {Temperature dependence of filament length of {{\textit{Anabaena spiroides Klebahn var. crassa Lemm.}}}}, - author = {Humitake Seki and Honami Ozawa and Shun-ei Ichimura}, - year = 1981, - journal = {Hydrobiologia}, - publisher = {Springer Science and Business Media {LLC}}, - volume = 83, - pages = {419--423}, - url = {https://doi.org/10.1007/bf02187039}, - doi = {10.1007/bf02187039}, - number = 3} - -@Article{sivonen1990toxic, - title = {Toxic cyanobacteria (blue-green algae) in Finnish fresh and coastal waters}, - author = {K. Sivonen and S. I. Niemel� and R. M. Niemi and L. Lepist� and T. H. Luoma and L. A. R�s�nen}, - year = 1990, - journal = {Hydrobiologia}, - publisher = {Springer Science and Business Media {LLC}}, - volume = 190, - pages = {267--275}, - url = {https://doi.org/10.1007/bf00008195}, - doi = {10.1007/bf00008195}, - number = 3} - -@Article{soares2010responses, - title = {Responses of the rotifer Brachionus calyciflorus to two tropical toxic cyanobacteria (Cylindrospermopsis raciborskii and Microcystis aeruginosa) in pure and mixed diets with green algae}, - author = {M. C. S. Soares and M. Lurling and V. L. M. Huszar}, - year = 2010, - journal = {Journal of Plankton Research}, - publisher = {Oxford University Press ({OUP})}, - volume = 32, - pages = {999--1008}, - url = {https://doi.org/10.1093/plankt/fbq042}, - doi = {10.1093/plankt/fbq042}, - number = 7} - -@Article{sorokin1962effects, - title = {Effects of Temperature {\&} Illuminance on Chlorella Growth Uncoupled From Cell Division}, - author = {Constantine Sorokin and Robert W. Krauss}, - year = 1962, - journal = {Plant Physiology}, - publisher = {Oxford University Press ({OUP})}, - volume = 37, - pages = {37--42}, - url = {https://doi.org/10.1104/pp.37.1.37}, - doi = {10.1104/pp.37.1.37}, - number = 1} - -@Article{staehr2006temperature, - title = {Temperature acclimation of growth, photosynthesis and respiration in two mesophilic phytoplankton species}, - author = {Peter A. Staehr and Mads J. Birkeland}, - year = 2006, - journal = {Phycologia}, - publisher = {Informa {UK} Limited}, - volume = 45, - pages = {648--656}, - url = {https://doi.org/10.2216/06-04.1}, - doi = {10.2216/06-04.1}, - number = 6} - -@Article{sung1999co2, - title = {{CO}2 fixation by Chlorella sp. {KR}-1 and its cultural characteristics}, - author = {K Sung}, - year = 1999, - journal = {Bioresource Technology}, - publisher = {Elsevier {BV}}, - volume = 68, - pages = {269--273}, - url = {https://doi.org/10.1016/s0960-8524%2898%2900152-7}, - doi = {10.1016/s0960-8524(98)00152-7}, - number = 3} - -@Article{talbot1991a, - title = {A comparative study and mathematical modeling of temperature, light and growth of three microalgae potentially useful for wastewater treatment}, - author = {P TALBOT}, - year = 1991, - journal = {Water Research}, - publisher = {Elsevier {BV}}, - volume = 25, - pages = {465--472}, - url = {https://doi.org/10.1016/0043-1354%2891%2990083-3}, - doi = {10.1016/0043-1354(91)90083-3}, - number = 4} - -@Article{tang1997cyanobacterial, - title = {{CYANOBACTERIAL} {DOMINANCE} {OF} {POLAR} {FRESHWATER} {ECOSYSTEMS}: {ARE} {HIGH}-{LATITUDE} {MAT}-{FORMERS} {ADAPTED} {TO} {LOW} {TEMPERATURE}?1}, - author = {Evonne P. Y. Tang and Roxanne Tremblay and Warwick F. Vincent}, - year = 1997, - journal = {Journal of Phycology}, - publisher = {Wiley}, - volume = 33, - pages = {171--181}, - url = {https://doi.org/10.1111/j.0022-3646.1997.00171.x}, - doi = {10.1111/j.0022-3646.1997.00171.x}, - number = 2} - -@Article{tasaka1996targeted, - title = {Targeted mutagenesis of acyl-lipid desaturases in Synechocystis: evidence for the important roles of polyunsaturated membrane lipids in growth, respiration and photosynthesis.}, - author = {Y. Tasaka and Z. Gombos and Y. Nishiyama and P. Mohanty and T. Ohba and K. Ohki and N. Murata}, - year = 1996, - journal = {The {EMBO} Journal}, - publisher = {Wiley}, - volume = 15, - pages = {6416--6425}, - url = {https://doi.org/10.1002/j.1460-2075.1996.tb01033.x}, - doi = {10.1002/j.1460-2075.1996.tb01033.x}, - number = 23} - -@Article{tsujimura2001effect, - title = {Effect of temperature on growth of the cyanobacterium Aphanizomenon flos-aquae in Lake Biwa and Lake Yogo}, - author = {Shigeo Tsujimura and Kanako Ishikawa and Hajime Tsukada}, - year = 2001, - journal = {Phycological Research}, - publisher = {Wiley}, - volume = 49, - pages = {275--280}, - url = {https://doi.org/10.1111/j.1440-1835.2001.tb00257.x}, - doi = {10.1111/j.1440-1835.2001.tb00257.x}, - number = 4} - -@Article{tsujimura2003effect, - title = {Effect of temperature and light on growth of planktic green algae isolated from Lake Hovsgol, Mongolia}, - author = {Shigeo Tsujimura and Michio Kumagai and Jotaro Urabe and Tatsuki Sekino and Yuichi Hayami and Masahiro Maruo}, - year = 2003, - journal = {Algological Studies/Archiv für Hydrobiologie, Supplement Volumes}, - publisher = {Schweizerbart}, - volume = 110, - pages = {81--89}, - url = {https://doi.org/10.1127/1864-1318/2003/0110-0081}, - doi = {10.1127/1864-1318/2003/0110-0081} -} - -@Article{venter2003ioscillatoria, - title = {Oscillatoria simplicissima : an autecological study}, - author = {A. Venter and S. Janse van Vuuren and A.J.H. Pieterse }, - year = 2003, - journal = {Water SA}, - volume = 29, - pages = {105--112}, - url = {https://journals.co.za/doi/abs/10.10520/EJC116052}, - number = 1, - doi = {10.10520/EJC116052}, - eprint = {https://journals.co.za/doi/pdf/10.10520/EJC116052} -} - -@Article{venter2003oscillatoriasimplicissima, - title = {{{\textit{Oscillatoria simplicissima}}} : an autecological study}, - author = {A. Venter and S. Janse van Vuuren and A.J.H. Pieterse }, - year = 2003, - journal = {Water SA}, - volume = 29, - pages = {105--112}, - url = {https://journals.co.za/doi/abs/10.10520/EJC116052}, - number = 1, - doi = {10.10520/EJC116052}, - eprint = {https://journals.co.za/doi/pdf/10.10520/EJC116052} -} - -@Article{rigano2000effects, - title = {Effects of sulfate-starvation and re-supply on growth, {NH}4$\mathplus$ uptake and starch metabolism in Chlorella sorokiniana}, - author = {Vittoria Di Martino Rigano and Vincenza Vona and Simona Carfagna and Sergio Esposito and Petronia Carillo and Carmelo Rigano}, - year = 2000, - journal = {Functional Plant Biology}, - publisher = {{CSIRO} Publishing}, - volume = 27, - pages = 335, - url = {https://doi.org/10.1071/pp99090}, - doi = {10.1071/pp99090}, - number = 4} - -@Article{wang2007studies, - title = {Studies on the factors affecting the growth and hemolytic activity of {{\textit{Anabaena variabilis}}}}, - author = {Wei Wang and Xiu-Kai Song and Shao-Guo Ru}, - year = 2007, - journal = {Journal of Applied Phycology}, - publisher = {Springer Science and Business Media {LLC}}, - volume = 19, - pages = {365--371}, - url = {https://doi.org/10.1007/s10811-006-9143-6}, - doi = {10.1007/s10811-006-9143-6}, - number = 4} - -@Article{watanabe1985effects, - title = {Effects of Environmental Factors on Toxicity of a Cyanobacterium ( {{\textit{Microcystis aeruginosa}}}) under Culture Conditions}, - author = {Mariyo F. Watanabe and Shinshi Oishi}, - year = 1985, - journal = {Applied and Environmental Microbiology}, - publisher = {American Society for Microbiology}, - volume = 49, - pages = {1342--1344}, - url = {https://doi.org/10.1128/aem.49.5.1342-1344.1985}, - doi = {10.1128/aem.49.5.1342-1344.1985}, - number = 5} - -@Article{westhuizen1985effect, - title = {Effect of temperature and light on the toxicity and growth of the blue-green alga Microcystis aeruginosa ({UV}-006)}, - author = {A. J. van der Westhuizen and J. N. Eloff}, - year = 1985, - journal = {Planta}, - publisher = {Springer Science and Business Media {LLC}}, - volume = 163, - pages = {55--59}, - url = {https://doi.org/10.1007/bf00395897}, - doi = {10.1007/bf00395897}, - number = 1} - -@Article{yue2005isolation, - title = {Isolation and determination of cultural characteristics of a new highly {CO}2 tolerant fresh water microalgae}, - author = {Lihong Yue and Weigong Chen}, - year = 2005, - journal = {Energy Conversion and Management}, - publisher = {Elsevier {BV}}, - volume = 46, - pages = {1868--1876}, - url = {https://doi.org/10.1016/j.enconman.2004.10.010}, - doi = {10.1016/j.enconman.2004.10.010}, - number = {11-12} -} - -@Article{zargar2007thermal, - title = {Thermal and Biocidal (Chlorine) Effects on Select Freshwater Plankton}, - author = {S. Zargar and T. K. Ghosh}, - year = 2007, - journal = {Archives of Environmental Contamination and Toxicology}, - publisher = {Springer Science and Business Media {LLC}}, - volume = 53, - pages = {191--197}, - url = {https://doi.org/10.1007/s00244-006-0108-1}, - doi = {10.1007/s00244-006-0108-1}, - number = 2} - -@Article{agawin2000response, - title = {Response of Mediterranean Synechococcus growth and loss rates to experimental nutrient inputs}, - author = {NSR Agawin and CM Duarte and S Agust{\'{\i}}}, - year = 2000, - journal = {Marine Ecology Progress Series}, - publisher = {Inter-Research Science Center}, - volume = 206, - pages = {97--106}, - url = {https://doi.org/10.3354/meps206097}, - doi = {10.3354/meps206097} -} - -@Article{gong2019reduced, - title = {Reduced daytime net growth rate of Synechococcus spp. in the East China sea in summer estimated using a dilution approach}, - author = {Gwo-Ching Gong and An-Yi Tsai}, - year = 2019, - journal = {Estuarine, Coastal and Shelf Science}, - publisher = {Elsevier {BV}}, - volume = 219, - pages = {90--96}, - url = {https://doi.org/10.1016/j.ecss.2019.01.029}, - doi = {10.1016/j.ecss.2019.01.029} -} - -@Article{lepp2004changes, - title = {Changes in Synechococcus Population Size and Cellular Ribosomal {RNA} Content in Response to Predation and Nutrient Limitation}, - author = {P.W. Lepp and T.M. Schmidt}, - year = 2004, - journal = {Microbial Ecology}, - publisher = {Springer Science and Business Media {LLC}}, - volume = 48, - pages = {1--9}, - url = {https://doi.org/10.1007/s00248-003-1041-8}, - doi = {10.1007/s00248-003-1041-8}, - number = 1} - -@Article{liu1998prochlorococcus, - title = {Prochlorococcus and Synechococcus growth rates and contributions to production in the Arabian Sea during the 1995 Southwest and Northeast Monsoons}, - author = {H. Liu and L. Campbell and M.R. Landry and H.A. Nolla and S.L. Brown and J. Constantinou}, - year = 1998, - journal = {Deep Sea Research Part {II}: Topical Studies in Oceanography}, - publisher = {Elsevier {BV}}, - volume = 45, - pages = {2327--2352}, - url = {https://doi.org/10.1016/s0967-0645%2898%2900073-3}, - doi = {10.1016/s0967-0645(98)00073-3}, - number = {10-11} -} - -@Article{glibert2009grazing, - title = {Grazing by Karenia brevis on Synechococcus enhances its growth rate and may help to sustain blooms}, - author = {PM Glibert and JM Burkholder and TM Kana and J Alexander and H Skelton and C Shilling}, - year = 2009, - journal = {Aquatic Microbial Ecology}, - publisher = {Inter-Research Science Center}, - volume = 55, - pages = {17--30}, - url = {https://doi.org/10.3354/ame01279}, - doi = {10.3354/ame01279} -} - -@Article{tsai2021response, - title = {Response of Growth and Grazing Rate of Nanoflagellates on Synechococcus spp. to Experimental Nutrient Enrichment}, - author = {An-Yi Tsai and Vladimir Mukhanov}, - year = 2021, - journal = {Water}, - publisher = {{MDPI} {AG}}, - volume = 13, - pages = 2686, - url = {https://doi.org/10.3390/w13192686}, - doi = {10.3390/w13192686}, - number = 19} - -@Article{heng2017synechococcus, - title = {Synechococcus production and grazing loss rates in nearshore tropical waters}, - author = {Pei Li Heng and Joon Hai Lim and Choon Weng Lee}, - year = 2017, - journal = {Environmental Monitoring and Assessment}, - publisher = {Springer Science and Business Media {LLC}}, - volume = 189, - url = {https://doi.org/10.1007/s10661-017-5838-1}, - doi = {10.1007/s10661-017-5838-1}, - number = 3} - -@Article{lababpour2016isolation, - title = {Isolation and submerged culture biomass production of the arid land cyanobacteria Microcoleus spp., an investigation on its utilization for biological soil crust restoration}, - author = {Abdolmajid Lababpour and Marzieh Kaviani}, - year = 2016, - journal = {Environmental Earth Sciences}, - publisher = {Springer Science and Business Media {LLC}}, - volume = 75, - url = {https://doi.org/10.1007/s12665-016-6313-y}, - doi = {10.1007/s12665-016-6313-y}, - number = 24} - -@Article{giraldosilva2019effect, - title = {Effect of preconditioning to the soil environment on the performance of 20 cyanobacterial strains used as inoculum for biocrust restoration}, - author = {Ana Giraldo-Silva and Corey Nelson and Cory Penfold and Nichole N. Barger and Ferran Garcia-Pichel}, - year = 2019, - journal = {Restoration Ecology}, - publisher = {Wiley}, - volume = 28, - url = {https://doi.org/10.1111/rec.13048}, - doi = {10.1111/rec.13048}, - number = {S2} -} - -@Article{prakash1999high, - title = {High concentrations ammonia removal by the cyanobacterium plectonema boryanum in a photobioreactor system}, - author = {Anand Prakash and Argyrios Margaritis and Richard C. Saunders and Sivaraman Vijayan}, - year = 1999, - journal = {The Canadian Journal of Chemical Engineering}, - publisher = {Wiley}, - volume = 77, - pages = {99--106}, - url = {https://doi.org/10.1002/cjce.5450770116}, - doi = {10.1002/cjce.5450770116}, - number = 1} - -@Article{miskiewicz2000photosynthetic, - title = {Photosynthetic Acclimation of the Filamentous Cyanobacterium, Plectonema boryanum {UTEX} 485, to Temperature and Light}, - author = {E. Miskiewicz and A. G. Ivanov and J. P. Williams and M. U. Khan and S. Falk and N. P.A. Huner}, - year = 2000, - journal = {Plant and Cell Physiology}, - publisher = {Oxford University Press ({OUP})}, - volume = 41, - pages = {767--775}, - url = {https://doi.org/10.1093/pcp/41.6.767}, - doi = {10.1093/pcp/41.6.767}, - number = 6} - -@Article{holtan1988phosphorus, - title = {Phosphorus in soil, water and sediment: an overview}, - author = {H. Holtan and L. Kamp-Nielsen and A. O. Stuanes}, - year = 1988, - journal = {Hydrobiologia}, - publisher = {Springer Science and Business Media {LLC}}, - volume = 170, - pages = {19--34}, - url = {https://doi.org/10.1007/bf00024896}, - doi = {10.1007/bf00024896}, - number = 1} - -@Article{milferstedt2017the, - title = {The importance of filamentous cyanobacteria in the development of oxygenic photogranules}, - author = {Kim Milferstedt and W. Camilla Kuo-Dahab and Caitlyn S. Butler and J{\'{e}}r{\^{o}}me Hamelin and Ahmed S. Abouhend and Kristie Stauch-White and Adam McNair and Christopher Watt and Blanca I. Carbajal-Gonz{\'{a}}lez and Sona Dolan and Chul Park}, - year = 2017, - journal = {Scientific Reports}, - publisher = {Springer Science and Business Media {LLC}}, - volume = 7, - url = {https://doi.org/10.1038/s41598-017-16614-9}, - doi = {10.1038/s41598-017-16614-9}, - number = 1} - -@Article{wijk2023regime, - title = {Regime shifts in shallow lakes explained by critical turbidity}, - author = {Dianneke van Wijk and Manqi Chang and Annette B.G. Janssen and Sven Teurlincx and Wolf M. Mooij}, - year = 2023, - journal = {Water Research}, - publisher = {Elsevier {BV}}, - volume = 242, - pages = 119950, - url = {https://doi.org/10.1016/j.watres.2023.119950}, - doi = {10.1016/j.watres.2023.119950} -} - -@Article{wang2022unraveling, - title = {Unraveling competition versus adsorbability of dissolved organic matter against organic micropollutants onto activated carbon}, - author = {Qi Wang and Frederik Zietzschmann and Roberta Hofman-Caris and Nan Jiang and Jonas Schuster and Zheng Wang and Jianwei Yu and Min Yang and Luuk C. Rietveld}, - year = 2022, - journal = {Separation and Purification Technology}, - publisher = {Elsevier {BV}}, - volume = 292, - pages = 120942, - url = {https://doi.org/10.1016/j.seppur.2022.120942}, - doi = {10.1016/j.seppur.2022.120942} -} - -@Article{qi2021preoxidation, - title = {Pre-oxidation enhanced cyanobacteria removal in drinking water treatment: A review}, - author = {Jing Qi and Baiwen Ma and Shiyu Miao and Ruiping Liu and Chengzhi Hu and Jiuhui Qu}, - year = 2021, - journal = {Journal of Environmental Sciences}, - publisher = {Elsevier {BV}}, - volume = 110, - pages = {160--168}, - url = {https://doi.org/10.1016/j.jes.2021.03.040}, - doi = {10.1016/j.jes.2021.03.040} -} - -@Article{guo2022gan, - title = {感官气相色谱对水中不同化合物嗅味特征的同步测定}, - author = {郭巧媛 and 王春苗 and 杨帆 and 陈燚 and 孙道林 and 杨敏 and 于建伟}, - year = 2022, - journal = {净水技术}, - volume = 41, - number = 04, - pages = {149--154}, - url = {https://doi.org/10.15890/j.cnki.jsjs.2022.04.023}, - doi = {10.15890/j.cnki.jsjs.2022.04.023} -} - -@Article{guo2022gan, - title = {感官气相色谱对水中不同化合物嗅味特征的同步测定}, - author = {郭巧媛 and 王春苗 and 杨帆 and 陈燚 and 孙道林 and 杨敏 and 于建伟}, - year = 2022, - journal = {净水技术}, - volume = 41, - number = 04, - pages = {149--154}, - url = {https://doi.org/10.15890/j.cnki.jsjs.2022.04.023}, - doi = {10.15890/j.cnki.jsjs.2022.04.023} -} - -@Article{ma2022a, - title = {A pilot-scale study of the integrated floc-ultrafiltration membrane-based drinking water treatment process}, - author = {Baiwen Ma and Yansong Liu and Hui Lin and Hongwei Fan and Chaojie Lu and Kai Zhao and Jing Qi}, - year = 2022, - journal = {Science of The Total Environment}, - publisher = {Elsevier {BV}}, - volume = 830, - pages = 154809, - url = {https://doi.org/10.1016/j.scitotenv.2022.154809}, - doi = {10.1016/j.scitotenv.2022.154809} -} - -@Article{mu2022dynamic, - title = {Dynamic chamber as a more reliable technique for measuring methane emissions from aquatic ecosystems}, - author = {Jichun Mu and Jing Qi and Hongwei Yu and Chengzhi Hu and Yujing Mu and Jiuhui Qu}, - year = 2022, - journal = {Science of The Total Environment}, - publisher = {Elsevier {BV}}, - volume = 851, - pages = 158147, - url = {https://doi.org/10.1016/j.scitotenv.2022.158147}, - doi = {10.1016/j.scitotenv.2022.158147} -} - -@Article{zhang2022factors, - title = {Factors Driving Microbial Community Dynamics and Potential Health Effects of Bacterial Pathogen on Landscape Lakes with Reclaimed Water Replenishment in Beijing, {PR} China}, - author = {Junzhi Zhang and Xiao He and Huixin Zhang and Yu Liao and Qi Wang and Luwei Li and Jianwei Yu}, - year = 2022, - journal = {International Journal of Environmental Research and Public Health}, - publisher = {{MDPI} {AG}}, - volume = 19, - pages = 5127, - url = {https://doi.org/10.3390/ijerph19095127}, - doi = {10.3390/ijerph19095127}, - number = 9} - -@Article{li2022identification, - title = {Identification of unknown disinfection byproducts in drinking water produced from Taihu Lake source water}, - author = {Jiabao Li and Haifeng Zhang and Juan Wang and Zhiyong Yu and Hongyan Li and Min Yang}, - year = 2022, - journal = {Journal of Environmental Sciences}, - publisher = {Elsevier {BV}}, - volume = 113, - pages = {1--11}, - url = {https://doi.org/10.1016/j.jes.2021.05.040}, - doi = {10.1016/j.jes.2021.05.040} -} - -@Article{song2021selection, - title = {Selection of water source for water transfer based on algal growth potential to prevent algal blooms}, - author = {Yongjun Song and Jing Qi and Le Deng and Yaohui Bai and Huijuan Liu and Jiuhui Qu}, - year = 2021, - journal = {Journal of Environmental Sciences}, - publisher = {Elsevier {BV}}, - volume = 103, - pages = {246--254}, - url = {https://doi.org/10.1016/j.jes.2020.10.020}, - doi = {10.1016/j.jes.2020.10.020} -} - -@Article{wang2021how, - title = {How properties of low molecular weight model competitors impact organic micropollutant adsorption onto activated carbon at realistically asymmetric concentrations}, - author = {Qi Wang and Raja-Louisa Mitchell and Roberta Hofman and Jianwei Yu and Min Yang and Luuk C. Rietveld and Frederik Zietzschmann}, - year = 2021, - journal = {Water Research}, - publisher = {Elsevier {BV}}, - volume = 202, - pages = 117443, - url = {https://doi.org/10.1016/j.watres.2021.117443}, - doi = {10.1016/j.watres.2021.117443} -} - -@Article{lu2023mibderived, - title = {{MIB}-derived odor management based upon hydraulic regulation in small drinking water reservoirs: principle and application}, - author = {Jinping Lu and Ming Su and Yuliang Su and Jiao Fang and Michael Burch and Tengxin Cao and Bin Wu and Jianwei Yu and Min Yang}, - year = {2023}, - journal = {Water Research}, - publisher = {Elsevier {BV}}, - issn = {0043-1354}, - pages = {120485}, - volume = {244}, - url = {https://www.sciencedirect.com/science/article/pii/S0043135423009259}, - doi = {10.1016/j.watres.2023.120485}, - other = {coauthor1, correspond1} -} - - -@Article{xu2022identification, - title = {Identification and Quantification of Nanoplastics in Surface Water and Groundwater by Pyrolysis Gas Chromatography{\textendash}Mass Spectrometry}, - author = {Yanghui Xu and Qin Ou and Meng Jiao and Gang Liu and Jan Peter van der Hoek}, - year = 2022, - journal = {Environmental Science {\&} Technology}, - publisher = {American Chemical Society ({ACS})}, - volume = 56, - pages = {4988--4997}, - url = {https://doi.org/10.1021/acs.est.1c07377}, - doi = {10.1021/acs.est.1c07377}, - number = 8} - -@Article{xu2023assessing, - title = {Assessing the Mass Concentration of Microplastics and Nanoplastics in Wastewater Treatment Plants by Pyrolysis Gas Chromatography{\textendash}Mass Spectrometry}, - author = {Yanghui Xu and Qin Ou and Xintu Wang and Feng Hou and Peng Li and Jan Peter van der Hoek and Gang Liu}, - year = 2023, - journal = {Environmental Science {\&} Technology}, - publisher = {American Chemical Society ({ACS})}, - volume = 57, - pages = {3114--3123}, - url = {https://doi.org/10.1021/acs.est.2c07810}, - doi = {10.1021/acs.est.2c07810}, - number = 8} - -@Article{cheng2010colloidfacilitated, - title = {Colloid-Facilitated Transport of Cesium in Vadose-Zone Sediments: The Importance of Flow Transients}, - author = {Tao Cheng and James E. Saiers}, - year = 2010, - journal = {Environmental Science {\&} Technology}, - publisher = {American Chemical Society ({ACS})}, - volume = 44, - pages = {7443--7449}, - url = {https://doi.org/10.1021/es100391j}, - doi = {10.1021/es100391j}, - number = 19} - -@Article{chen2023viruspathogen, - title = {Virus{\textendash}pathogen interactions improve water quality along the Middle Route of the South-to-North Water Diversion Canal}, - author = {Tianyi Chen and Tang Liu and Zongzhi Wu and Bingxue Wang and Qian Chen and Mi Zhang and Enhang Liang and Jinren Ni}, - year = 2023, - journal = {The {ISME} Journal}, - publisher = {Springer Science and Business Media {LLC}}, - volume = 17, - pages = {1719--1732}, - url = {https://doi.org/10.1038/s41396-023-01481-2}, - doi = {10.1038/s41396-023-01481-2}, - number = 10} - -@Article{soinne2014effect, - title = {Effect of biochar on phosphorus sorption and clay soil aggregate stability}, - author = {Helena Soinne and Jarkko Hovi and Priit Tammeorg and Eila Turtola}, - year = 2014, - journal = {Geoderma}, - publisher = {Elsevier {BV}}, - volume = {219-220}, - pages = {162--167}, - url = {https://doi.org/10.1016/j.geoderma.2013.12.022}, - doi = {10.1016/j.geoderma.2013.12.022} -} - -@Article{jiang2017colloidbound, - title = {Colloid-bound and dissolved phosphorus species in topsoil water extracts along a grassland transect from Cambisol to Stagnosol}, - author = {Xiaoqian Jiang and Roland Bol and Barbara J. Cade-Menun and Volker Nischwitz and Sabine Willbold and Sara L. Bauke and Harry Vereecken and Wulf Amelung and Erwin Klumpp}, - year = 2017, - journal = {Biogeosciences}, - publisher = {Copernicus {GmbH}}, - volume = 14, - pages = {1153--1164}, - url = {https://doi.org/10.5194/bg-14-1153-2017}, - doi = {10.5194/bg-14-1153-2017}, - number = 5} - -@Article{eltohamy2023nano, - title = {Nano and fine colloids suspended in the soil solution regulate phosphorus desorption and lability in organic fertiliser-amended soils}, - author = {Kamel Mohamed Eltohamy and Jianye Li and Mostafa Gouda and Daniel Menezes-Blackburn and Paul J. Milham and Sangar Khan and Fayong Li and Chunlong Liu and Jianming Xu and Xinqiang Liang}, - year = 2023, - journal = {Science of The Total Environment}, - publisher = {Elsevier {BV}}, - volume = 858, - pages = 160195, - url = {https://doi.org/10.1016/j.scitotenv.2022.160195}, - doi = {10.1016/j.scitotenv.2022.160195} -} - -@Article{saeed2018regulation, - title = {Regulation of phosphorus bioavailability by iron nanoparticles in a monomictic lake}, - author = {H. Saeed and A. Hartland and N. J. Lehto and M. Baalousha and M. Sikder and D. Sandwell and M. Mucalo and D. P. Hamilton}, - year = 2018, - journal = {Scientific Reports}, - publisher = {Springer Science and Business Media {LLC}}, - volume = 8, - url = {https://doi.org/10.1038/s41598-018-36103-x}, - doi = {10.1038/s41598-018-36103-x}, - number = 1} - -@Article{elser2011a, - title = {A broken biogeochemical cycle}, - author = {James Elser and Elena Bennett}, - year = 2011, - journal = {Nature}, - publisher = {Springer Science and Business Media {LLC}}, - volume = 478, - pages = {29--31}, - url = {https://doi.org/10.1038/478029a}, - doi = {10.1038/478029a}, - number = 7367} - -@Article{kpodonu2016coupled, - title = {Coupled use of sediment phosphorus speciation and pigment composition to infer phytoplankton phenology over 700~years in a deep oligotrophic lake}, - author = {Alfred Theodore N. K. Kpodonu and David P. Hamilton and Adam Hartland and Daniel C. Laughlin and Christopher H. Lusk}, - year = 2016, - journal = {Biogeochemistry}, - publisher = {Springer Science and Business Media {LLC}}, - volume = 129, - pages = {181--196}, - url = {https://doi.org/10.1007/s10533-016-0227-3}, - doi = {10.1007/s10533-016-0227-3}, - number = {1-2} -} - -@Article{wilson2010a, - title = {A record of phosphorus dynamics in oligotrophic lake sediment}, - author = {Tiffany A. Wilson and Aria Amirbahman and Stephen A. Norton and Mary A. Voytek}, - year = 2010, - journal = {Journal of Paleolimnology}, - publisher = {Springer Science and Business Media {LLC}}, - volume = 44, - pages = {279--294}, - url = {https://doi.org/10.1007/s10933-009-9403-y}, - doi = {10.1007/s10933-009-9403-y}, - number = 1} - -@Article{moorleghem2013the, - title = {The bioavailability of colloidal and dissolved organic phosphorus to the alga Pseudokirchneriella subcapitata in relation to analytical phosphorus measurements}, - author = {Christoff Van Moorleghem and Nynke De Schutter and Erik Smolders and Roel Merckx}, - year = 2013, - journal = {Hydrobiologia}, - publisher = {Springer Science and Business Media {LLC}}, - volume = 709, - pages = {41--53}, - url = {https://doi.org/10.1007/s10750-013-1442-8}, - doi = {10.1007/s10750-013-1442-8}, - number = 1} - -@Article{buffle1995characterization, - title = {Characterization of Aquatic Colloids and Macromolecules. 2. Key Role of Physical Structures on Analytical Results}, - author = {J. Buffle and G. G. Leppard}, - year = 1995, - journal = {Environmental Science {\&} Technology}, - publisher = {American Chemical Society ({ACS})}, - volume = 29, - pages = {2176--2184}, - url = {https://doi.org/10.1021/es00009a005}, - doi = {10.1021/es00009a005}, - number = 9} - -@Article{maher1998procedures, - title = {Procedures for the storage and digestion of natural waters for the determination of filterable reactive phosphorus, total filterable phosphorus and total phosphorus}, - author = {W. Maher and L. Woo}, - year = 1998, - journal = {Analytica Chimica Acta}, - publisher = {Elsevier {BV}}, - volume = 375, - pages = {5--47}, - url = {https://doi.org/10.1016/s0003-2670%2898%2900274-8}, - doi = {10.1016/s0003-2670(98)00274-8}, - number = {1-2} -} - -@Article{amirbahman2003relationship, - doi = {10.1023/a:1026245914721}, - url = {https://doi.org/10.1023/a:1026245914721}, - year = {2003}, - publisher = {Springer Science and Business Media {LLC}}, - title = {Relationship between hypolimnetic phosphorus and iron release from eleven lakes in Maine, USA}, - volume = {65}, - number = {3}, - pages = {369--386}, - author = {Aria Amirbahman and Andrea R. Pearce and Roy J. Bouchard and Stephen A. Norton and J. Steven Kahl}, - journal = {Biogeochemistry} -} - -@Article{hongve1997cycling, - title = {Cycling of iron, manganese, and phosphate in a meromictic lake}, - author = {Dag Hongve}, - year = 1997, - journal = {Limnology and Oceanography}, - publisher = {Wiley}, - volume = 42, - pages = {635--647}, - url = {https://doi.org/10.4319/lo.1997.42.4.0635}, - doi = {10.4319/lo.1997.42.4.0635}, - number = 4} - -@Article{pizarro1995coagulationsedimentation, - title = {Coagulation/sedimentation of submicron iron particles in a eutrophic lake}, - author = {Jaime Pizarro and Nelson Belzile and Montserrat Filella and Gary G. Leppard and Jean-Claude Negre and Didier Perret and Jacques Buffle}, - year = 1995, - journal = {Water Research}, - publisher = {Elsevier {BV}}, - volume = 29, - pages = {617--632}, - url = {https://doi.org/10.1016/0043-1354%2894%2900167-6}, - doi = {10.1016/0043-1354(94)00167-6}, - number = 2} - -@Article{laxen1983size, - title = {Size distribution of iron and manganese species in freshwaters}, - author = {Duncan P.H. Laxen and I.Michael Chandler}, - year = 1983, - journal = {Geochimica et Cosmochimica Acta}, - publisher = {Elsevier {BV}}, - volume = 47, - pages = {731--741}, - url = {https://doi.org/10.1016/0016-7037%2883%2990107-2}, - doi = {10.1016/0016-7037(83)90107-2}, - number = 4} - -@Article{hartland2015association, - title = {Association of Arsenic and Phosphorus with Iron Nanoparticles between Streams and Aquifers: Implications for Arsenic Mobility}, - author = {Adam Hartland and Joshua R. Larsen and Martin S. Andersen and Mohammed Baalousha and Denis O'Carroll}, - year = 2015, - journal = {Environmental Science {\&} Technology}, - publisher = {American Chemical Society ({ACS})}, - volume = 49, - pages = {14101--14109}, - url = {https://doi.org/10.1021/acs.est.5b03506}, - doi = {10.1021/acs.est.5b03506}, - number = 24} - -@Article{zhang2015use, - title = {Use of diffusive gradients in thin-films for studies of chemical speciation and bioavailability}, - author = {Hao Zhang and William Davison}, - year = 2015, - journal = {Environmental Chemistry}, - publisher = {{CSIRO} Publishing}, - volume = 12, - pages = 85, - url = {https://doi.org/10.1071/en14105}, - doi = {10.1071/en14105}, - number = 2} - -@Article{zhang2014bioavailability, - title = {Bioavailability assessment of phosphorus and metals in soils and sediments: a review of diffusive gradients in thin films ({DGT})}, - author = {Chaosheng Zhang and Shiming Ding and Di Xu and Ya Tang and Ming H. Wong}, - year = 2014, - journal = {Environmental Monitoring and Assessment}, - publisher = {Springer Science and Business Media {LLC}}, - volume = 186, - pages = {7367--7378}, - url = {https://doi.org/10.1007/s10661-014-3933-0}, - doi = {10.1007/s10661-014-3933-0}, - number = 11} - -@Article{giles2015the, - title = {The mobility of phosphorus, iron, and manganese through the sediment{\textendash}water continuum of a shallow eutrophic freshwater lake under stratified and mixed water-column conditions}, - author = {Courtney D. Giles and Peter D. F. Isles and Tom Manley and Yaoyang Xu and Gregory K. Druschel and Andrew W. Schroth}, - year = 2015, - journal = {Biogeochemistry}, - publisher = {Springer Science and Business Media {LLC}}, - volume = 127, - pages = {15--34}, - url = {https://doi.org/10.1007/s10533-015-0144-x}, - doi = {10.1007/s10533-015-0144-x}, - number = 1} - -@Article{sun2019highly, - title = {Highly efficient removal of phosphonates from water by a combined Fe({III})/{UV}/co-precipitation process}, - author = {Shuhui Sun and Shu Wang and Yuxuan Ye and Bingcai Pan}, - year = 2019, - journal = {Water Research}, - publisher = {Elsevier {BV}}, - volume = 153, - pages = {21--28}, - url = {https://doi.org/10.1016/j.watres.2019.01.007}, - doi = {10.1016/j.watres.2019.01.007} -} - -@Article{saad2014review, - title = {Review on Freshwater Blue-Green Algae (Cyanobacteria): Occurrence, Classification and Toxicology}, - author = {Awatef Saad and Ahmed Atia}, - year = 2014, - journal = {Biosciences Biotechnology Research Asia}, - publisher = {Oriental Scientific Publishing Company}, - volume = 11, - pages = {1319--1325}, - url = {https://doi.org/10.13005/bbra/1522}, - doi = {10.13005/bbra/1522}, - number = 3} - -@Article{li2023efficient, - title = {Efficient removal of imidacloprid from sewage by {{\textit{Scenedesmus}}} sp. {TXH} and the effects of environmental factors on its removal}, - author = {Diantong Li and Jiayu Li and Balijiang Yeerhazi and Yongtao Cheng}, - year = 2023, - journal = {Journal of Chemical Technology {\&} Biotechnology}, - publisher = {Wiley}, - volume = 98, - pages = {1014--1024}, - url = {https://doi.org/10.1002/jctb.7308}, - doi = {10.1002/jctb.7308}, - number = 4} - -@Article{kim2009isolation, - title = {Isolation and characterization of a marine algicidal bacterium against the harmful raphidophyceae Chattonella marina}, - author = {Yun Sook Kim and Dae-Sung Lee and Seong-Yun Jeong and Woe Jae Lee and Myung-Suk Lee}, - year = 2009, - journal = {The Journal of Microbiology}, - publisher = {Springer Science and Business Media {LLC}}, - volume = 47, - pages = {9--18}, - url = {https://doi.org/10.1007/s12275-008-0141-z}, - doi = {10.1007/s12275-008-0141-z}, - number = 1} - -@Article{strachan2012a, - title = {A comparative study on the effects of barite, ilmenite and bentonite on four suspension feeding bivalves}, - author = {Maia F. Strachan and Paul F. Kingston}, - year = 2012, - journal = {Marine Pollution Bulletin}, - publisher = {Elsevier {BV}}, - volume = 64, - pages = {2029--2038}, - url = {https://doi.org/10.1016/j.marpolbul.2012.06.023}, - doi = {10.1016/j.marpolbul.2012.06.023}, - number = 10} - -@Article{liu2017effects, - title = {Effects of modified clay on the physiological and photosynthetic activities of Amphidinium carterae Hulburt}, - author = {Shuya Liu and Zhiming Yu and Xiuxian Song and Xihua Cao}, - year = 2017, - journal = {Harmful Algae}, - publisher = {Elsevier {BV}}, - volume = 70, - pages = {64--72}, - url = {https://doi.org/10.1016/j.hal.2017.10.007}, - doi = {10.1016/j.hal.2017.10.007} -} - -@Article{wang2014effects, - title = {Effects of modified clay on cysts of Scrippsiella trochoidea for harmful algal bloom control}, - author = {Zhifu Wang and Zhiming Yu and Xiuxian Song and Xihua Cao and Xiaotian Han}, - year = 2014, - journal = {Chinese Journal of Oceanology and Limnology}, - publisher = {Springer Science and Business Media {LLC}}, - volume = 32, - pages = {1373--1382}, - url = {https://doi.org/10.1007/s00343-015-4008-y}, - doi = {10.1007/s00343-015-4008-y}, - number = 6} - -@Article{grima2003recovery, - title = {Recovery of microalgal biomass and metabolites: process options and economics}, - author = {E Molina Grima and E.-H Belarbi and F.G Aci{\'{e}}n Fern{\'{a}}ndez and A Robles Medina and Yusuf Chisti}, - year = 2003, - journal = {Biotechnology Advances}, - publisher = {Elsevier {BV}}, - volume = 20, - pages = {491--515}, - url = {https://doi.org/10.1016/s0734-9750%2802%2900050-2}, - doi = {10.1016/s0734-9750(02)00050-2}, - number = {7-8} -} - -@Article{chen2011harmful, - title = {Harmful algal blooms mitigation using clay/soil/sand modified with xanthan and calcium hydroxide}, - author = {Jing Chen and Gang Pan}, - year = 2011, - journal = {Journal of Applied Phycology}, - publisher = {Springer Science and Business Media {LLC}}, - volume = 24, - pages = {1183--1189}, - url = {https://doi.org/10.1007/s10811-011-9751-7}, - doi = {10.1007/s10811-011-9751-7}, - number = 5} - -@Article{sun2004screening, - title = {Screening of surfactants for harmful algal blooms mitigation}, - author = {Xiao-Xia Sun and Kyung-Nam Han and Joong-Ki Choi and Eun-Ki Kim}, - year = 2004, - journal = {Marine Pollution Bulletin}, - publisher = {Elsevier {BV}}, - volume = 48, - pages = {937--945}, - url = {https://doi.org/10.1016/j.marpolbul.2003.11.021}, - doi = {10.1016/j.marpolbul.2003.11.021}, - number = {9-10} -} - -@Article{pan2011modified, - title = {Modified local sands for the mitigation of harmful algal blooms}, - author = {Gang Pan and Jing Chen and Donald M. Anderson}, - year = 2011, - journal = {Harmful Algae}, - publisher = {Elsevier {BV}}, - volume = 10, - pages = {381--387}, - url = {https://doi.org/10.1016/j.hal.2011.01.003}, - doi = {10.1016/j.hal.2011.01.003}, - number = 4} - -@Article{piriou2009european, - title = {European reassessment of {MIB} and geosmin perception in drinking water}, - author = {P. Piriou and R. Devesa and M. De Lalande and K. Glucina}, - year = 2009, - journal = {Journal of Water Supply: Research and Technology-Aqua}, - publisher = {{IWA} Publishing}, - volume = 58, - pages = {532--538}, - url = {https://doi.org/10.2166/aqua.2009.124}, - doi = {10.2166/aqua.2009.124}, - number = 8} - -@Article{qi2023uncovering, - title = {Uncovering Bacterial Hosts of Class 1 Integrons in an Urban Coastal Aquatic Environment with a Single-Cell Fusion-Polymerase Chain Reaction Technology}, - author = {Qin Qi and Timothy M Ghaly and Anahit Penesyan and Vaheesan Rajabal and Jeremy AC Stacey and Sasha G Tetu and Michael R Gillings}, - year = 2023, - journal = {Environmental Science {\&} Technology}, - publisher = {American Chemical Society ({ACS})}, - volume = 57, - pages = {4870--4879}, - url = {https://doi.org/10.1021/acs.est.2c09739}, - doi = {10.1021/acs.est.2c09739}, - number = 12} - -@Article{ma2017catalogue, - title = {Catalogue of antibiotic resistome and host-tracking in drinking water deciphered by a large scale survey}, - author = {Liping Ma and Bing Li and Xiao-Tao Jiang and Yu-Lin Wang and Yu Xia and An-Dong Li and Tong Zhang}, - year = 2017, - journal = {Microbiome}, - publisher = {Springer Science and Business Media {LLC}}, - volume = 5, - url = {https://doi.org/10.1186/s40168-017-0369-0}, - doi = {10.1186/s40168-017-0369-0}, - number = 1} - -@Article{desantis2006greengenes, - title = {Greengenes, a Chimera-Checked 16S {rRNA} Gene Database and Workbench Compatible with {ARB}}, - author = {T. Z. DeSantis and P. Hugenholtz and N. Larsen and M. Rojas and E. L. Brodie and K. Keller and T. Huber and D. Dalevi and P. Hu and G. L. Andersen}, - year = 2006, - journal = {Applied and Environmental Microbiology}, - publisher = {American Society for Microbiology}, - volume = 72, - pages = {5069--5072}, - url = {https://doi.org/10.1128/aem.03006-05}, - doi = {10.1128/aem.03006-05}, - number = 7} - -@Article{qin2019unraveling, - title = {Unraveling the diversity of sedimentary sulfate-reducing prokaryotes ({SRP}) across Tibetan saline lakes using {epicPCR}}, - author = {Huayu Qin and Shang Wang and Kai Feng and Zhili He and Marko P. J. Virta and Weiguo Hou and Hailiang Dong and Ye Deng}, - year = 2019, - journal = {Microbiome}, - publisher = {Springer Science and Business Media {LLC}}, - volume = 7, - url = {https://doi.org/10.1186/s40168-019-0688-4}, - doi = {10.1186/s40168-019-0688-4}, - number = 1} - -@Article{callieri2008picophytoplankton, - title = {Picophytoplankton in Freshwater Ecosystems: The Importance of Small-Sized Phototrophs}, - author = {Cristiana Callieri}, - year = 2008, - journal = {Freshwater Reviews}, - publisher = {Freshwater Biological Association ({BioOne} sponsored)}, - volume = 1, - pages = {1--28}, - url = {https://doi.org/10.1608/frj-1.1.1}, - doi = {10.1608/frj-1.1.1}, - number = 1} - -@Article{cai2013diversity, - title = {Diversity and dynamics of picocyanobacteria and the bloom-forming cyanobacteria in a large shallow eutrophic lake (lake Chaohu, China)}, - author = {Yuanfeng Cai and Fanxiang Kong}, - year = 2013, - journal = {Journal of Limnology}, - publisher = {{PAGEPress} Publications}, - volume = 72, - pages = 38, - url = {https://doi.org/10.4081/jlimnol.2013.e38}, - doi = {10.4081/jlimnol.2013.e38}, - number = 3} - -@Article{ruber2016synechococcus, - title = {Synechococcus diversity along a trophic gradient in the Osterseen Lake District, Bavaria}, - author = {Joachim Ruber and Franziska R. Bauer and Andrew D. Millard and Uta Raeder and Juergen Geist and Katrin Zwirglmaier}, - year = 2016, - journal = {Microbiology}, - publisher = {Microbiology Society}, - volume = 162, - pages = {2053--2063}, - url = {https://doi.org/10.1099/mic.0.000389}, - doi = {10.1099/mic.0.000389}, - number = 12} - -@Article{casero2019unmasking, - title = {Unmasking the identity of toxigenic cyanobacteria driving a multi-toxin bloom by high-throughput sequencing of cyanotoxins genes and 16S {rRNA} metabarcoding}, - author = {Mar{\'{\i}}a Cristina Casero and David Vel{\'{a}}zquez and Miguel Medina-Cobo and Antonio Quesada and Samuel Cir{\'{e}}s}, - year = 2019, - journal = {Science of The Total Environment}, - publisher = {Elsevier {BV}}, - volume = 665, - pages = {367--378}, - url = {https://doi.org/10.1016/j.scitotenv.2019.02.083}, - doi = {10.1016/j.scitotenv.2019.02.083} -} - -@Article{reinl2022the, - title = {The role of organic nutrients in structuring freshwater phytoplankton communities in a rapidly changing world}, - author = {Kaitlin L. Reinl and Ted D. Harris and Inge Elfferich and Ayooluwateso Coker and Qing Zhan and Lisette N. De Senerpont Domis and Ana M Morales-Williams and Ruchi Bhattacharya and Hans-Peter Grossart and Rebecca L. North and Jon N. Sweetman}, - year = 2022, - journal = {Water Research}, - publisher = {Elsevier {BV}}, - volume = 219, - pages = 118573, - url = {https://doi.org/10.1016/j.watres.2022.118573}, - doi = {10.1016/j.watres.2022.118573} -} - -@Article{yang2022the, - title = {The influence of hydraulic characteristics on algal bloom in three gorges reservoir, China: A combination of cultural experiments and field monitoring}, - author = {Zhengjian Yang and Chenyu Wei and Defu Liu and Qicai Lin and Yuling Huang and Congfeng Wang and Daobin Ji and Jun Ma and Hong Yang}, - year = 2022, - journal = {Water Research}, - publisher = {Elsevier {BV}}, - volume = 211, - pages = 118030, - url = {https://doi.org/10.1016/j.watres.2021.118030}, - doi = {10.1016/j.watres.2021.118030} -} - -@Article{domis2007climateinduced, - title = {Climate-induced shifts in an experimental phytoplankton community: a mechanistic approach}, - author = {Lisette N. De Senerpont Domis and Wolf M. Mooij and Jef Huisman}, - year = 2007, - journal = {Hydrobiologia}, - publisher = {Springer Science and Business Media {LLC}}, - volume = 584, - pages = {403--413}, - url = {https://doi.org/10.1007/s10750-007-0609-6}, - doi = {10.1007/s10750-007-0609-6}, - number = 1} - -@Article{huo2022centurylong, - title = {Century-Long Homogenization of Algal Communities Is Accelerated by Nutrient Enrichment and Climate Warming in Lakes and Reservoirs of the North Temperate Zone}, - author = {Shouliang Huo and Hanxiao Zhang and Marie-Eve Monchamp and Rong Wang and Nanyan Weng and Jingtian Zhang and Hong Zhang and Fengchang Wu}, - year = 2022, - journal = {Environmental Science {\&} Technology}, - publisher = {American Chemical Society ({ACS})}, - volume = 56, - pages = {3780--3790}, - url = {https://doi.org/10.1021/acs.est.1c06958}, - doi = {10.1021/acs.est.1c06958}, - number = 6} - -@Article{gundersen2021the, - title = {The effect of periodic disturbances and carrying capacity on the significance of selection and drift in complex bacterial communities}, - author = {Madeleine S. Gundersen and Ian Arthur Morelan and Tom Andersen and Ingrid Bakke and Olav Vadstein}, - year = 2021, - journal = {{ISME} Communications}, - publisher = {Springer Science and Business Media {LLC}}, - volume = 1, - url = {https://doi.org/10.1038/s43705-021-00058-4}, - doi = {10.1038/s43705-021-00058-4}, - number = 1} - -@Article{kim2021implications, - title = {Implications of flow regulation for habitat conditions and phytoplankton populations of the Nakdong River, South Korea}, - author = {Hyo Gyeom Kim and Friedrich Recknagel and Hyun-Woo Kim and Gea-Jae Joo}, - year = 2021, - journal = {Water Research}, - publisher = {Elsevier {BV}}, - volume = 207, - pages = 117807, - url = {https://doi.org/10.1016/j.watres.2021.117807}, - doi = {10.1016/j.watres.2021.117807} -} - -@Article{wang2016an, - title = {An experimental study of the intrinsic stability of random forest variable importance measures}, - author = {Huazhen Wang and Fan Yang and Zhiyuan Luo}, - year = 2016, - journal = {{BMC} Bioinformatics}, - publisher = {Springer Science and Business Media {LLC}}, - volume = 17, - url = {https://doi.org/10.1186/s12859-016-0900-5}, - doi = {10.1186/s12859-016-0900-5}, - number = 1} - -@Article{zhou2011phylogenetic, - title = {Phylogenetic Molecular Ecological Network of Soil Microbial Communities in Response to Elevated {CO}2}, - author = {Jizhong Zhou and Ye Deng and Feng Luo and Zhili He and Yunfeng Yang}, - year = 2011, - journal = {{mBio}}, - publisher = {American Society for Microbiology}, - volume = 2, - url = {https://doi.org/10.1128/mbio.00122-11}, - doi = {10.1128/mbio.00122-11}, - number = 4, - editor = {David Relman} -} - -@Article{zhou2021resource, - title = {Resource aromaticity affects bacterial community successions in response to different sources of dissolved organic matter}, - author = {Lei Zhou and Yongqiang Zhou and Xiangming Tang and Yunlin Zhang and Kyoung-Soon Jang and Anna J Sz{\'{e}}kely and Erik Jeppesen}, - year = 2021, - journal = {Water Research}, - publisher = {Elsevier {BV}}, - volume = 190, - pages = 116776, - url = {https://doi.org/10.1016/j.watres.2020.116776}, - doi = {10.1016/j.watres.2020.116776} -} - -@Article{buchan2014master, - title = {Master recyclers: features and functions of bacteria associated with phytoplankton blooms}, - author = {Alison Buchan and Gary R. LeCleir and Christopher A. Gulvik and Jos{\'{e}} M. Gonz{\'{a}}lez}, - year = 2014, - journal = {Nature Reviews Microbiology}, - publisher = {Springer Science and Business Media {LLC}}, - volume = 12, - pages = {686--698}, - url = {https://doi.org/10.1038/nrmicro3326}, - doi = {10.1038/nrmicro3326}, - number = 10} - -@Article{klindworth2014diversity, - title = {Diversity and activity of marine bacterioplankton during a diatom bloom in the North Sea assessed by total {RNA} and pyrotag sequencing}, - author = {Anna Klindworth and Alexander J. Mann and Sixing Huang and Antje Wichels and Christian Quast and Jost Waldmann and Hanno Teeling and Frank Oliver Glöckner}, - year = 2014, - journal = {Marine Genomics}, - publisher = {Elsevier {BV}}, - volume = 18, - pages = {185--192}, - url = {https://doi.org/10.1016/j.margen.2014.08.007}, - doi = {10.1016/j.margen.2014.08.007} -} - -@Article{teeling2012substratecontrolled, - title = {Substrate-Controlled Succession of Marine Bacterioplankton Populations Induced by a Phytoplankton Bloom}, - author = {Hanno Teeling and Bernhard M. Fuchs and Dörte Becher and Christine Klockow and Antje Gardebrecht and Christin M. Bennke and Mariette Kassabgy and Sixing Huang and Alexander J. Mann and Jost Waldmann and Marc Weber and Anna Klindworth and Andreas Otto and Jana Lange and Jörg Bernhardt and Christine Reinsch and Michael Hecker and Jörg Peplies and Frank D. Bockelmann and Ulrich Callies and Gunnar Gerdts and Antje Wichels and Karen H. Wiltshire and Frank Oliver Glöckner and - Thomas Schweder and Rudolf Amann}, - year = 2012, - journal = {Science}, - publisher = {American Association for the Advancement of Science ({AAAS})}, - volume = 336, - pages = {608--611}, - url = {https://doi.org/10.1126/science.1218344}, - doi = {10.1126/science.1218344}, - number = 6081} - -@Article{bahram2015stochastic, - title = {Stochastic distribution of small soil eukaryotes resulting from high dispersal and drift in a local environment}, - author = {Mohammad Bahram and Petr Kohout and Sten Anslan and Helery Harend and Kessy Abarenkov and Leho Tedersoo}, - year = 2015, - journal = {The {ISME} Journal}, - publisher = {Springer Science and Business Media {LLC}}, - volume = 10, - pages = {885--896}, - url = {https://doi.org/10.1038/ismej.2015.164}, - doi = {10.1038/ismej.2015.164}, - number = 4} - -@Article{gao2020fungal, - title = {Fungal community assembly in drought-stressed sorghum shows stochasticity, selection, and universal ecological dynamics}, - author = {Cheng Gao and Liliam Montoya and Ling Xu and Mary Madera and Joy Hollingsworth and Elizabeth Purdom and Vasanth Singan and John Vogel and Robert B. Hutmacher and Jeffery A. Dahlberg and Devin Coleman-Derr and Peggy G. Lemaux and John W. Taylor}, - year = 2020, - journal = {Nature Communications}, - publisher = {Springer Science and Business Media {LLC}}, - volume = 11, - url = {https://doi.org/10.1038/s41467-019-13913-9}, - doi = {10.1038/s41467-019-13913-9}, - number = 1} - -@Article{li2020integrating, - title = {Integrating Microbial Community Assembly and Fluid Kinetics to Decouple Nitrogen Dynamics in an Urban Channel Confluence}, - author = {Yi Li and Cizhang Hui and Wenlong Zhang and Chao Wang and Lihua Niu and Huanjun Zhang and Longfei Wang}, - year = 2020, - journal = {Environmental Science {\&} Technology}, - publisher = {American Chemical Society ({ACS})}, - volume = 54, - pages = {11237--11248}, - url = {https://doi.org/10.1021/acs.est.0c02971}, - doi = {10.1021/acs.est.0c02971}, - number = 18} - -@Article{burns2015contribution, - title = {Contribution of neutral processes to the assembly of gut microbial communities in the zebrafish over host development}, - author = {Adam R Burns and W Zac Stephens and Keaton Stagaman and Sandi Wong and John F Rawls and Karen Guillemin and Brendan JM Bohannan}, - year = 2015, - journal = {The {ISME} Journal}, - publisher = {Springer Science and Business Media {LLC}}, - volume = 10, - pages = {655--664}, - url = {https://doi.org/10.1038/ismej.2015.142}, - doi = {10.1038/ismej.2015.142}, - number = 3} - -@Article{liu2015phytoplankton, - title = {Phytoplankton Communities Exhibit a Stronger Response to Environmental Changes than Bacterioplankton in Three Subtropical Reservoirs}, - author = {Lemian Liu and Jun Yang and Hong Lv and Xiaoqing Yu and David M. Wilkinson and Jun Yang}, - year = 2015, - journal = {Environmental Science {\&} Technology}, - publisher = {American Chemical Society ({ACS})}, - volume = 49, - pages = {10850--10858}, - url = {https://doi.org/10.1021/acs.est.5b02637}, - doi = {10.1021/acs.est.5b02637}, - number = 18} - -@Article{wu2017contrasting, - title = {Contrasting the relative importance of species sorting and dispersal limitation in shaping marine bacterial versus protist communities}, - author = {Wenxue Wu and Hsiao-Pei Lu and Akash Sastri and Yi-Chun Yeh and Gwo-Ching Gong and Wen-Chen Chou and Chih-Hao Hsieh}, - year = 2017, - journal = {The {ISME} Journal}, - publisher = {Springer Science and Business Media {LLC}}, - volume = 12, - pages = {485--494}, - url = {https://doi.org/10.1038/ismej.2017.183}, - doi = {10.1038/ismej.2017.183}, - number = 2} - -@Article{needham2016pronounced, - title = {Pronounced daily succession of phytoplankton, archaea and bacteria following a spring bloom}, - author = {David M. Needham and Jed A. Fuhrman}, - year = 2016, - journal = {Nature Microbiology}, - publisher = {Springer Science and Business Media {LLC}}, - volume = 1, - url = {https://doi.org/10.1038/nmicrobiol.2016.5}, - doi = {10.1038/nmicrobiol.2016.5}, - number = 4} - -@Article{liu2020spatiotemporal, - title = {Spatiotemporal dynamics of the archaeal community in coastal sediments: assembly process and co-occurrence relationship}, - author = {Jiwen Liu and Shangqing Zhu and Xiaoyue Liu and Peng Yao and Tiantian Ge and Xiao-Hua Zhang}, - year = 2020, - journal = {The {ISME} Journal}, - publisher = {Springer Science and Business Media {LLC}}, - volume = 14, - pages = {1463--1478}, - url = {https://doi.org/10.1038/s41396-020-0621-7}, - doi = {10.1038/s41396-020-0621-7}, - number = 6} - -@Article{maslov2002specificity, - title = {Specificity and Stability in Topology of Protein Networks}, - author = {Sergei Maslov and Kim Sneppen}, - year = 2002, - journal = {Science}, - publisher = {American Association for the Advancement of Science ({AAAS})}, - volume = 296, - pages = {910--913}, - url = {https://doi.org/10.1126/science.1065103}, - doi = {10.1126/science.1065103}, - number = 5569} - -@Article{li2021the, - title = {The ecology of the plastisphere: Microbial composition, function, assembly, and network in the freshwater and seawater ecosystems}, - author = {Changchao Li and Lifei Wang and Shuping Ji and Mengjie Chang and Longfei Wang and Yandong Gan and Jian Liu}, - year = 2021, - journal = {Water Research}, - publisher = {Elsevier {BV}}, - volume = 202, - pages = 117428, - url = {https://doi.org/10.1016/j.watres.2021.117428}, - doi = {10.1016/j.watres.2021.117428} -} - -@Article{lurgi2019modularity, - title = {Modularity and predicted functions of the global sponge-microbiome network}, - author = {Miguel Lurgi and Torsten Thomas and Bernd Wemheuer and Nicole S. Webster and Jose M. Montoya}, - year = 2019, - journal = {Nature Communications}, - publisher = {Springer Science and Business Media {LLC}}, - volume = 10, - url = {https://doi.org/10.1038/s41467-019-08925-4}, - doi = {10.1038/s41467-019-08925-4}, - number = 1} - -@Article{liu2021spatiotemporal, - title = {Spatiotemporal dynamics of succession and growth limitation of phytoplankton for nutrients and light in a large shallow lake}, - author = {Xuemei Liu and Liwen Chen and Guangxin Zhang and Jingjie Zhang and Yao Wu and Hanyu Ju}, - year = 2021, - journal = {Water Research}, - publisher = {Elsevier {BV}}, - volume = 194, - pages = 116910, - url = {https://doi.org/10.1016/j.watres.2021.116910}, - doi = {10.1016/j.watres.2021.116910} -} - -@Article{xiao2019warming, - title = {Warming Amplifies the Frequency of Harmful Algal Blooms with Eutrophication in Chinese Coastal Waters}, - author = {Xi Xiao and Susana Agust{\'{\i}} and Yaoru Pan and Yan Yu and Ke Li and Jiaping Wu and Carlos M. Duarte}, - year = 2019, - journal = {Environmental Science {\&} Technology}, - publisher = {American Chemical Society ({ACS})}, - volume = 53, - pages = {13031--13041}, - url = {https://doi.org/10.1021/acs.est.9b03726}, - doi = {10.1021/acs.est.9b03726}, - number = 22} - - @article{liaw2002the, - author = {Liaw, Andy and Wiener, Matthew}, - title = {The R Journal: Classification and regression by randomForest}, - journal = {R News}, - year = {2002}, - note = {https://journal.r-project.org/articles/RN-2002-022/}, - volume = {2}, - issue = {3}, - issn = {1609-3631}, - pages = {18-22} -} - -@manual{archer2021rfpermute, - author = {Eric Archer}, - title = {rfPermute: version 2.5}, - month = may, - year = 2021, - note = {https://github.com/EricArcher/rfPermute}, - publisher = {Zenodo}, - version = {v2.5}, - doi = {10.5281/zenodo.5532822}, - url = {https://doi.org/10.5281/zenodo.5532822} -} - -@article{schermelleh2003evaluating, - title = {Evaluating the fit of structural equation models: Tests of significance and descriptive goodness-of-fit measures}, - author = {Schermelleh-Engel, Karin and Moosbrugger, Helfried and M{\"u}ller, Hans and others}, - journal={Methods of psychological research online}, - volume={8}, - number={2}, - pages={23--74}, - year ={2003} -} - -@Book{byrne2016structural, - title = {Structural Equation Modeling With {AMOS}}, - author = {Barbara M. Byrne}, - year = 2016, - publisher = {Routledge}, - url = {https://doi.org/10.4324/9781315757421}, - doi = {10.4324/9781315757421} -} - -@article{breiman2001random, - title = {Random forests}, - author = {Breiman, Leo}, - journal = {Machine learning}, - volume = {45}, - pages = {5--32}, - year = {2001}, - url = {https://link.springer.com/article/10.1023/A:1010933404324}, - doi = {10.1023/A:1010933404324}, - publisher = {Springer} -} - -@Article{zeng2004adsorptive, - title = {Adsorptive removal of phosphate from aqueous solutions using iron oxide tailings}, - author = {Le Zeng and Xiaomei Li and Jindun Liu}, - year = 2004, - journal = {Water Research}, - publisher = {Elsevier {BV}}, - volume = 38, - pages = {1318--1326}, - url = {https://doi.org/10.1016/j.watres.2003.12.009}, - doi = {10.1016/j.watres.2003.12.009}, - number = 5} - -@Article{abeynayaka2017buoyancy, - title = {Buoyancy Limitation of Filamentous Cyanobacteria under Prolonged Pressure due to the Gas Vesicles Collapse}, - author = {Helayaye Damitha Lakmali Abeynayaka and Takashi Asaeda and Yasuko Kaneko}, - year = 2017, - journal = {Environmental Management}, - publisher = {Springer Science and Business Media {LLC}}, - volume = 60, - pages = {293--303}, - url = {https://doi.org/10.1007/s00267-017-0875-7}, - doi = {10.1007/s00267-017-0875-7}, - number = 2} - -@Article{stroom2016how, - title = {How to combat cyanobacterial blooms: strategy toward preventive lake restoration and reactive control measures}, - author = {Jasper M. Stroom and W. Edwin A. Kardinaal}, - year = 2016, - journal = {Aquatic Ecology}, - publisher = {Springer Science and Business Media {LLC}}, - volume = 50, - pages = {541--576}, - url = {https://doi.org/10.1007/s10452-016-9593-0}, - doi = {10.1007/s10452-016-9593-0}, - number = 3} - -@Article{zhao2023interbacterial, - title = {Inter-bacterial mutualism promoted by public goods in a system characterized by deterministic temperature variation}, - author = {Yuxiang Zhao and Zishu Liu and Baofeng Zhang and Jingjie Cai and Xiangwu Yao and Meng Zhang and Ye Deng and Baolan Hu}, - year = 2023, - journal = {Nature Communications}, - publisher = {Springer Science and Business Media {LLC}}, - volume = 14, - url = {https://doi.org/10.1038/s41467-023-41224-7}, - doi = {10.1038/s41467-023-41224-7}, - number = 1} - -@Article{li2014a, - title = {A freshwater bacterial strain, Shewanella sp. Lzh-2, isolated from Lake Taihu and its two algicidal active substances, hexahydropyrrolo[1,2-a]pyrazine-1,4-dione and 2, 3-indolinedione}, - author = {Zhenghua Li and Shengqin Lin and Xianglong Liu and Jing Tan and Jianliang Pan and Hong Yang}, - year = 2014, - journal = {Applied Microbiology and Biotechnology}, - publisher = {Springer Science and Business Media {LLC}}, - volume = 98, - pages = {4737--4748}, - url = {https://doi.org/10.1007/s00253-014-5602-1}, - doi = {10.1007/s00253-014-5602-1}, - number = 10} - -@Article{kim2018application, - title = {Application of metagenome analysis to characterize the molecular diversity and saxitoxin-producing potentials of a cyanobacterial community: a case study in the North Han River, Korea}, - author = {Keon Hee Kim and Youngdae Yoon and Woon-Young Hong and JaeBum Kim and Yung-Chul Cho and Soon-Jin Hwang}, - year = 2018, - journal = {Applied Biological Chemistry}, - publisher = {Springer Science and Business Media {LLC}}, - volume = 61, - pages = {153--161}, - url = {https://doi.org/10.1007/s13765-017-0342-4}, - doi = {10.1007/s13765-017-0342-4}, - number = 2} - -@Article{wickham2019welcome, - title = {Welcome to the Tidyverse}, - author = {Hadley Wickham and Mara Averick and Jennifer Bryan and Winston Chang and Lucy McGowan and Romain Fran{\c{c}}ois and Garrett Grolemund and Alex Hayes and Lionel Henry and Jim Hester and Max Kuhn and Thomas Pedersen and Evan Miller and Stephan Bache and Kirill Müller and Jeroen Ooms and David Robinson and Dana Seidel and Vitalie Spinu and Kohske Takahashi and Davis Vaughan and Claus Wilke and Kara Woo and Hiroaki Yutani}, - year = 2019, - journal = {Journal of Open Source Software}, - publisher = {The Open Journal}, - volume = 4, - pages = 1686, - url = {https://doi.org/10.21105/joss.01686}, - doi = {10.21105/joss.01686}, - number = 43} - -@Article{park2013economic, - title = {Economic impact, management and mitigation of red tides in Korea}, - author = {Tae Gyu Park and Weol Ae Lim and Young Tae Park and Chang Kyu Lee and Hae Jin Jeong}, - year = 2013, - journal = {Harmful Algae}, - publisher = {Elsevier {BV}}, - volume = 30, - pages = {S131--S143}, - url = {https://doi.org/10.1016/j.hal.2013.10.012}, - doi = {10.1016/j.hal.2013.10.012} -} - -@Article{cheng2019remote, - title = {Remote sensing estimation of chlorophyll-a concentration in Taihu Lake considering spatial and temporal variations}, - author = {Chunmei Cheng and Yuchun Wei and Guonian Lv and Ning Xu}, - year = 2019, - journal = {Environmental Monitoring and Assessment}, - publisher = {Springer Science and Business Media {LLC}}, - volume = 191, - url = {https://doi.org/10.1007/s10661-018-7106-4}, - doi = {10.1007/s10661-018-7106-4}, - number = 2} - -@Article{zou2023why, - title = {Why do algal blooms intensify under reduced nitrogen and fluctuating phosphorus conditions: The underappreciated role of non-algal light attenuation}, - author = {Wei Zou and Hai Xu and Guangwei Zhu and Mengyuan Zhu and Chaoxuan Guo and Man Xiao and Yunlin Zhang and Boqiang Qin}, - year = 2023, - journal = {Limnology and Oceanography}, - publisher = {Wiley}, - url = {https://doi.org/10.1002/lno.12421}, - doi = {10.1002/lno.12421} -} - -@Article{qin2019why, - title = {Why Lake Taihu continues to be plagued with cyanobacterial blooms through 10 years (2007{\textendash}2017) efforts}, - author = {Boqiang Qin and Hans W. Paerl and Justin D. Brookes and Jianguo Liu and Erik Jeppesen and Guangwei Zhu and Yunlin Zhang and Hai Xu and Kun Shi and Jianming Deng}, - year = 2019, - journal = {Science Bulletin}, - publisher = {Elsevier {BV}}, - volume = 64, - pages = {354--356}, - url = {https://doi.org/10.1016/j.scib.2019.02.008}, - doi = {10.1016/j.scib.2019.02.008}, - number = 6} - -@Article{zou2022temporal, - title = {Temporal dependence of chlorophyll a{\textendash}nutrient relationships in Lake Taihu: Drivers and management implications}, - author = {Wei Zou and Guangwei Zhu and Hai Xu and Mengyuan Zhu and Yunlin Zhang and Boqiang Qin}, - year = 2022, - journal = {Journal of Environmental Management}, - publisher = {Elsevier {BV}}, - volume = 306, - pages = 114476, - url = {https://doi.org/10.1016/j.jenvman.2022.114476}, - doi = {10.1016/j.jenvman.2022.114476} -} - -@Article{michel2004adaptation, - title = {Adaptation of the photosynthetic electron transport chain in cyanobacteria to iron deficiency: The function of {IdiA} and {IsiA}}, - author = {Klaus-Peter Michel and Elfriede K. Pistorius}, - year = 2004, - journal = {Physiologia Plantarum}, - publisher = {Wiley}, - volume = 120, - pages = {36--50}, - url = {https://doi.org/10.1111/j.0031-9317.2004.0229.x}, - doi = {10.1111/j.0031-9317.2004.0229.x}, - number = 1} - -@Article{ruhland2015lake, - title = {Lake diatom responses to warming: reviewing the evidence}, - author = {Kathleen M. Rühland and Andrew M. Paterson and John P. Smol}, - year = 2015, - journal = {Journal of Paleolimnology}, - publisher = {Springer Science and Business Media {LLC}}, - volume = 54, - pages = {1--35}, - url = {https://doi.org/10.1007/s10933-015-9837-3}, - doi = {10.1007/s10933-015-9837-3}, - number = 1} - -@Article{satanwat2023total, - title = {Total ammonia nitrogen removal and microbial community dynamics in an outdoor {HDPE}-lined shrimp pond with no water discharge}, - author = {Penpicha Satanwat and Paveena Tapaneeyaworawong and Piyanuch Wechprasit and Tharin Boonprasertsakul and Wiboonluk Pungrasmi and Kallaya Sritunyalucksana and Anuphap Prachumwat and Sorawit Powtongsook}, - year = 2023, - journal = {Aquaculture}, - publisher = {Elsevier {BV}}, - volume = 577, - pages = 739898, - url = {https://doi.org/10.1016/j.aquaculture.2023.739898}, - doi = {10.1016/j.aquaculture.2023.739898} -} - -@Article{lewis2023effects, - title = {Effects of Hypoxia on Coupled Carbon and Iron Cycling Differ Between Weekly and Multiannual Timescales in Two Freshwater Reservoirs}, - author = {Abigail S. L. Lewis and Madeline E. Schreiber and B. R. Niederlehner and Arpita Das and Nicholas W. Hammond and Mary E. Lofton and Heather L. Wander and Cayelan C. Carey}, - year = 2023, - journal = {Journal of Geophysical Research: Biogeosciences}, - publisher = {American Geophysical Union ({AGU})}, - volume = 128, - url = {https://doi.org/10.1029/2022jg007071}, - doi = {10.1029/2022jg007071}, - number = 1} - -@Article{munger2019oxygenation, - title = {Oxygenation and hydrologic controls on iron and manganese mass budgets in a drinking-water reservoir}, - author = {Zackary W. Munger and Cayelan C. Carey and Alexandra B. Gerling and Jonathan P. Doubek and Kathleen D. Hamre and Ryan P. McClure and Madeline E. Schreiber}, - year = 2019, - journal = {Lake and Reservoir Management}, - publisher = {Informa {UK} Limited}, - volume = 35, - pages = {277--291}, - url = {https://doi.org/10.1080/10402381.2018.1545811}, - doi = {10.1080/10402381.2018.1545811}, - number = 3} - -@Article{tekerlekopoulou2007ammonia, - title = {Ammonia, iron and manganese removal from potable water using trickling filters}, - author = {A.G. Tekerlekopoulou and D.V. Vayenas}, - year = 2007, - journal = {Desalination}, - publisher = {Elsevier {BV}}, - volume = 210, - pages = {225--235}, - url = {https://doi.org/10.1016/j.desal.2006.05.047}, - doi = {10.1016/j.desal.2006.05.047}, - number = {1-3} -} - -@Article{zhu2021monitoring, - title = {Monitoring of Yangtze River Discharge at Datong Hydrometric Station Using Acoustic Tomography Technology}, - author = {Ze-Nan Zhu and Xiao-Hua Zhu and Chuanzheng Zhang and Minmo Chen and Hua Zheng and Zhensheng Zhang and Jiwen Zhong and Lixin Wei and Qiang Li and Hua Wang and Shuming Li and Arata Kaneko}, - year = 2021, - journal = {Frontiers in Earth Science}, - publisher = {Frontiers Media {SA}}, - volume = 9, - url = {https://doi.org/10.3389/feart.2021.723123}, - doi = {10.3389/feart.2021.723123} -} - -@Article{yang2005trends, - title = {Trends in annual discharge from the Yangtze River to the sea (1865{\textendash}2004) / Tendances et {\'{e}}pisodes extr{\^{e}}mes dans les d{\'{e}}bits annuels du Fleuve Yangtze d{\'{e}}bouchant dans la mer (1865{\textendash}2004)}, - author = {S. L. Yang and A. Gao and Helenmary M. Hotz and J. Zhu and S. B. Dai and M. Li}, - year = 2005, - journal = {Hydrological Sciences Journal}, - publisher = {Informa {UK} Limited}, - volume = 50, - url = {https://doi.org/10.1623/hysj.2005.50.5.825}, - doi = {10.1623/hysj.2005.50.5.825}, - number = 5} - -@Article{zhang2003fuzzy, - title = {Fuzzy comprehensive evaluation of container transportation modes along the Changjiang River main line and its delta area}, - author = {Shiyu Zhang and Hanliang Xiao}, - year = 2003, - journal = {Chinese Geographical Science}, - publisher = {Springer Science and Business Media {LLC}}, - volume = 13, - pages = {259--261}, - url = {https://doi.org/10.1007/s11769-003-0027-2}, - doi = {10.1007/s11769-003-0027-2}, - number = 3} - -@Article{vandergucht2007the, - title = {The power of species sorting: Local factors drive bacterial community composition over a wide range of spatial scales}, - author = {Van der Gucht, Katleen and Cottenie, Karl and Muylaert, Koenraad and Vloemans, Nele and Cousin, Sylvie and Declerck, Steven and Jeppesen, Erik and Conde-Porcuna, Jose-Maria and Schwenk, Klaus and Zwart, Gabriel and Degans, Hanne and Vyverman, Wim and De Meester, Luc}, - year = 2007, - journal = {Proceedings of the National Academy of Sciences}, - publisher = {Proceedings of the National Academy of Sciences}, - volume = 104, - pages = {20404–20409}, - url = {http://dx.doi.org/10.1073/pnas.0707200104}, - issn = {1091-6490}, - doi = {10.1073/pnas.0707200104}, - number = 51} - -@phdthesis{wang2012lan, - author = {王中杰}, - title = {蓝藻土霉异味物质合成基因的研究及其生态应用}, - university = {中国科学院大学}, - year = {2012}, - type = {Thesis} -} - -@phdthesis{wang2012liu, - author = {王建慧}, - title = {流速对藻类生长影响试验及应用研究}, - university = {清华大学}, - type = {硕士}, - year = {2012}, - type = {Thesis} -} - - -@Article{wang2004residence, - title = {Residence time of the Danshuei River estuary, Taiwan}, - author = {Wang, Chi-Fang and Hsu, Ming-Hsi and Kuo, Albert Y.}, - year = 2004, - journal = {Estuarine, Coastal and Shelf Science}, - publisher = {Elsevier BV}, - volume = 60, - pages = {381–393}, - url = {http://dx.doi.org/10.1016/j.ecss.2004.01.013}, - issn = {0272-7714}, - doi = {10.1016/j.ecss.2004.01.013}, - number = 3} - -@Article{cai2020the, - title = {The model cyanobacteria {{\textit{Anabaena}}} sp. PCC 7120 possess an intact but partially degenerated gene cluster encoding gas vesicles}, - author = {Cai, Kun and Xu, Bo-Ying and Jiang, Yong-Liang and Wang, Ying and Chen, Yuxing and Zhou, Cong-Zhao and Li, Qiong}, - year = 2020, - journal = {BMC Microbiology}, - publisher = {Springer Science and Business Media LLC}, - volume = 20, - url = {http://dx.doi.org/10.1186/s12866-020-01805-8}, - issn = {1471-2180}, - doi = {10.1186/s12866-020-01805-8}, - number = 1} - -@misc{jiang2011lan, - author = {姜锦林 and 宋睿 and 任静华 and 王晓蓉 and 杨柳燕}, - title = {蓝藻水华衍生的微囊藻毒素污染及其对水生生物的生态毒理学研究}, - volume = {23}, - number = {01}, - pages = {246-253}, - ISBN = {1005-281X}, - year = {2011}, - type = {Unused 2} -} - -@Article{phetxumphou2017implementing, - title = {Implementing the Drinking Water Taste‐and‐Odor Wheel to Improve the Consumer Lexicon}, - author = {Phetxumphou, Katherine and Raghuraman, Aarathi and Dietrich, Andrea M.}, - year = 2017, - journal = {Journal AWWA}, - publisher = {Wiley}, - volume = 109, - url = {http://dx.doi.org/10.5942/jawwa.2017.109.0122}, - issn = {1551-8833}, - doi = {10.5942/jawwa.2017.109.0122}, - number = 11} - -@Article{wang2020pyrazines, - title = {Pyrazines: A diverse class of earthy-musty odorants impacting drinking water quality and consumer satisfaction}, - author = {Wang, Chunmiao and Yu, Jianwei and Gallagher, Daniel L. and Byrd, Julia and Yao, Wenchuo and Wang, Qi and Guo, Qingyuan and Dietrich, Andrea M. and Yang, Min}, - year = 2020, - journal = {Water Research}, - publisher = {Elsevier BV}, - volume = 182, - pages = 115971, - url = {http://dx.doi.org/10.1016/j.watres.2020.115971}, - issn = {0043-1354}, - doi = {10.1016/j.watres.2020.115971} -} - -@phdthesis{zhou2020gong, - author = {周昕彦}, - title = {供水管网中土霉味卤代苯甲醚的生物甲基化生成机制研究}, - university = {浙江大学}, - year = {2020}, - type = {Thesis} -} - -@misc{shi2019jiang, - author = {史鹏程 and 朱广伟 and 杨文斌 and 许海 and 朱梦圆 and 邹伟 and 胡林娜 and 笪文怡 and 季鹏飞}, - title = {江苏水源地型水库异味物质发生风险及影响因素}, - volume = {40}, - number = {09}, - pages = {4000-4008}, - ISBN = {0250-3301}, - DOI = {10.13227/j.hjkx.201812024}, - year = {2019} -} - -@misc{dong2011shi, - author = {董月芬}, - title = {石家庄市水源水除嗅研究}, - volume = {34}, - number = {10}, - pages = {70-72}, - ISBN = {1003-5095}, - year = {2011} -} - -@misc{rong2018nan, - author = {荣超 and 韩小波 and 张金松 and 于建伟 and 苏命}, - title = {南方某市水源臭味物质识别及分布研究}, - volume = {54}, - number = {08}, - pages = {32-37}, - ISBN = {1002-8471}, - year = {2018} -} - -@Article{wang2019occurrence, - title = {Occurrence of swampy/septic odor and possible odorants in source and finished drinking water of major cities across China}, - author = {Wang, Chunmiao and Yu, Jianwei and Guo, Qingyuan and Sun, Daolin and Su, Ming and An, Wei and Zhang, Yu and Yang, Min}, - year = 2019, - journal = {Environmental Pollution}, - publisher = {Elsevier BV}, - volume = 249, - pages = {305–310}, - url = {http://dx.doi.org/10.1016/j.envpol.2019.03.041}, - issn = {0269-7491}, - doi = {10.1016/j.envpol.2019.03.041} -} - -@Article{uwins2007a, - title = {A case study investigating the occurrence of geosmin and 2-methylisoborneol (MIB) in the surface waters of the Hinze Dam, Gold Coast, Australia}, - author = {Uwins, H.K. and Teasdale, P. and Stratton, H.}, - year = 2007, - journal = {Water Science and Technology}, - publisher = {IWA Publishing}, - volume = 55, - pages = {231–238}, - url = {http://dx.doi.org/10.2166/wst.2007.184}, - issn = {1996-9732}, - doi = {10.2166/wst.2007.184}, - number = 5} - -@phdthesis{ma2007tu, - author = {马晓雁}, - title = {土臭素和二甲基异冰片的控制技术及机理研究}, - university = {同济大学}, - year = {2007}, - type = {Thesis} -} - - -@Article{chow1999the, - title = {The impact of conventional water treatment processes on cells of the cyanobacterium Microcystis aeruginosa}, - author = {Chow, Christopher W.K and Drikas, Mary and House, Jenny and Burch, Michael D and Velzeboer, Renate M.A}, - year = 1999, - journal = {Water Research}, - publisher = {Elsevier BV}, - volume = 33, - pages = {3253–3262}, - url = {http://dx.doi.org/10.1016/S0043-1354(99)00051-2}, - issn = {0043-1354}, - doi = {10.1016/s0043-1354(99)00051-2}, - number = 15} - -@Article{ghernaout2010algae, - title = {Algae and cyanotoxins removal by coagulation/flocculation: A review}, - author = {Ghernaout, Badiaa and Ghernaout, Djamel and Saiba, Ali}, - year = 2010, - journal = {Desalination and Water Treatment}, - publisher = {Informa UK Limited}, - volume = 20, - pages = {133–143}, - url = {http://dx.doi.org/10.5004/dwt.2010.1202}, - issn = {1944-3986}, - doi = {10.5004/dwt.2010.1202}, - number = {1–3} -} - -@Article{zhu2022management, - title = {Management of biogenic taste and odour: From source water, through treatment processes and distribution systems, to consumers}, - author = {Zhu, Jin and Stuetz, Richard M. and Hamilton, Lisa and Power, Kaye and Crosbie, Nicholas D. and Tamburic, Bojan}, - year = 2022, - journal = {Journal of Environmental Management}, - publisher = {Elsevier BV}, - volume = 323, - pages = 116225, - url = {http://dx.doi.org/10.1016/j.jenvman.2022.116225}, - issn = {0301-4797}, - doi = {10.1016/j.jenvman.2022.116225} -} - -@Article{dixon2011removal, - title = {Removal of cyanobacterial metabolites by nanofiltration from two treated waters}, - author = {Dixon, Mike B. and Falconet, Charlotte and Ho, Lionel and Chow, Christopher W.K. and O’Neill, Brian K. and Newcombe, Gayle}, - year = 2011, - journal = {Journal of Hazardous Materials}, - publisher = {Elsevier BV}, - volume = 188, - pages = {288–295}, - url = {http://dx.doi.org/10.1016/j.jhazmat.2011.01.111}, - issn = {0304-3894}, - doi = {10.1016/j.jhazmat.2011.01.111}, - number = {1–3} -} - -@Article{liang2012pac, - title = {PAC Addition on Immersed Ultrafiltration Membrane for the Treatment of Raw Water Containing Taste and Odor Compounds}, - author = {Liang, Shuang and Li, Xing and Yang, Yan Ling and Liu, Ling and Liu, Yong Wang and Cheng, Zhen Jie and Li, Bo and Li, Gui Bai}, - year = 2012, - journal = {Advanced Materials Research}, - publisher = {Trans Tech Publications, Ltd.}, - volume = {446–449}, - pages = {2855–2859}, - url = {http://dx.doi.org/10.4028/www.scientific.net/AMR.446-449.2855}, - issn = {1662-8985}, - doi = {10.4028/www.scientific.net/amr.446-449.2855} -} - -@Article{lin2016pretreatment, - title = {Pretreatment of algae-laden and manganese-containing waters by oxidation-assisted coagulation: Effects of oxidation on algal cell viability and manganese precipitation}, - author = {Lin, Jr-Lin and Hua, Lap-Cuong and Wu, Yuting and Huang, Chihpin}, - year = 2016, - journal = {Water Research}, - publisher = {Elsevier BV}, - volume = 89, - pages = {261–269}, - url = {http://dx.doi.org/10.1016/j.watres.2015.11.042}, - issn = {0043-1354}, - doi = {10.1016/j.watres.2015.11.042} -} - -@Article{guo2021variation, - title = {Variation and mitigation of musty, septic, chemical, grassy, fishy odors and corresponding odorants in a full-scale drinking water treatment plant with advanced treatments}, - author = {Guo, Qingyuan and Zhang, Xiaohong and Li, Xuan and Chen, Tianming and Yang, Bairen and Ding, Cheng and Wang, Chunmiao and Pan, Mei and Ma, Weixing and Yu, Jianwei}, - year = 2021, - journal = {Chemosphere}, - publisher = {Elsevier BV}, - volume = 269, - pages = 128691, - url = {http://dx.doi.org/10.1016/j.chemosphere.2020.128691}, - issn = {0045-6535}, - doi = {10.1016/j.chemosphere.2020.128691} -} - -@Article{guo2016simultaneous, - title = {Simultaneous removal of multiple odorants from source water suffering from septic and musty odors: Verification in a full-scale water treatment plant with ozonation}, - author = {Guo, Qingyuan and Yang, Kai and Yu, Jianwei and Wang, Chunmiao and Wen, Xiaodong and Zhang, Liping and Yang, Min and Xia, Ping and Zhang, Dong}, - year = 2016, - journal = {Water Research}, - publisher = {Elsevier BV}, - volume = 100, - pages = {1–6}, - url = {http://dx.doi.org/10.1016/j.watres.2016.05.017}, - issn = {0043-1354}, - doi = {10.1016/j.watres.2016.05.017} -} - -@Article{bang2016removal, - title = {Removal of taste and odor causing compounds by UV/H2O2treatment: effect of the organic and inorganic water matrix}, - author = {Bang, Hohee and Slokar, Yness M. and Ferrero, Giuliana and Kruithof, Joop C. and Kennedy, Maria D.}, - year = 2016, - journal = {Desalination and Water Treatment}, - publisher = {Informa UK Limited}, - pages = {1–10}, - url = {http://dx.doi.org/10.1080/19443994.2016.1177274}, - issn = {1944-3986}, - doi = {10.1080/19443994.2016.1177274} -} - -@Article{vega2013adsorption, - title = {Adsorption of volatile sulphur compounds onto modified activated carbons: Effect of oxygen functional groups}, - author = {Vega, Esther and Lemus, Jesús and Anfruns, Alba and Gonzalez-Olmos, Rafael and Palomar, José and Martin, María J.}, - year = 2013, - journal = {Journal of Hazardous Materials}, - publisher = {Elsevier BV}, - volume = {258–259}, - pages = {77–83}, - url = {http://dx.doi.org/10.1016/j.jhazmat.2013.04.043}, - issn = {0304-3894}, - doi = {10.1016/j.jhazmat.2013.04.043} -} - -@Article{ashitani1988behavior, - title = {Behavior of Musty Odorous Compounds during the Process of Water Treatment}, - author = {Ashitani, K. and Hishida, Y. and Fujiwara, K.}, - year = 1988, - journal = {Water Science and Technology}, - publisher = {IWA Publishing}, - volume = 20, - pages = {261–267}, - url = {http://dx.doi.org/10.2166/wst.1988.0251}, - issn = {1996-9732}, - doi = {10.2166/wst.1988.0251}, - number = {8–9} -} - -@Article{vega2014integration, - title = {Integration of advanced oxidation processes at mild conditions in wet scrubbers for odourous sulphur compounds treatment}, - author = {Vega, Esther and Martin, Maria J. and Gonzalez-Olmos, Rafael}, - year = 2014, - journal = {Chemosphere}, - publisher = {Elsevier BV}, - volume = 109, - pages = {113–119}, - url = {http://dx.doi.org/10.1016/j.chemosphere.2014.02.061}, - issn = {0045-6535}, - doi = {10.1016/j.chemosphere.2014.02.061} -} - -@Article{kim2019degradation, - title = {Degradation kinetics and pathways of β-cyclocitral and β-ionone during UV photolysis and UV/chlorination reactions}, - author = {Kim, Taeyeon and Kim, Tae-Kyoung and Zoh, Kyung-Duk}, - year = 2019, - journal = {Journal of Environmental Management}, - publisher = {Elsevier BV}, - volume = 239, - pages = {8–16}, - url = {http://dx.doi.org/10.1016/j.jenvman.2019.03.032}, - issn = {0301-4797}, - doi = {10.1016/j.jenvman.2019.03.032} -} - -@misc{zeng2011chou, - author = {曾小磊 and 蔡云龙 and 陈国光 and 徐国勋}, - title = {臭味感官分析法在饮用水测定中的应用}, - volume = {47}, - number = {03}, - pages = {14-18}, - ISBN = {1002-8471}, - DOI = {10.13789/j.cnki.wwe1964.2011.03.030}, - year = {2011} -} - - -@Article{graham2000modeling, - title = {Modeling equilibrium adsorption of 2-methylisoborneol and geosmin in natural waters}, - author = {Graham, M}, - year = 2000, - journal = {Water Research}, - publisher = {Elsevier BV}, - volume = 34, - pages = {2291–2300}, - url = {http://dx.doi.org/10.1016/S0043-1354(99)00390-5}, - issn = {0043-1354}, - doi = {10.1016/s0043-1354(99)00390-5}, - number = 8} - -@Article{krasner1985tastes, - title = {Tastes and Odors: The Flavor Profile Method}, - author = {Krasner, Stuart W. and McGuire, Michael J. and Ferguson, Virginia B.}, - year = 1985, - journal = {Journal AWWA}, - publisher = {Wiley}, - volume = 77, - pages = {34–39}, - url = {http://dx.doi.org/10.1002/j.1551-8833.1985.tb05504.x}, - issn = {1551-8833}, - doi = {10.1002/j.1551-8833.1985.tb05504.x}, - number = 3} - -@misc{apha2017standard, - author = {APHA}, - title = {Standard Methods for the Examination of Water and Wastewater}, - publisher = {American Public Health Association}, - year = {2017}, - type = {Standard} -} - -@misc{xue2012min, - author = {薛芝敏 and 吴燕芳}, - title = {闽江下游水域中2------甲基异茨醇和土臭素含量变化特征研究}, - volume = {21}, - number = {05}, - pages = {58-62}, - ISBN = {1009-8143}, - year = {2012} -} - - -@Article{hsieh2011effect, - title = {Effect of pH on the Analysis of 2-MIB and Geosmin in Water}, - author = {Hsieh, Wen-Hsing and Hung, Wei-Nung and Wang, Gen-Shuh and Hsieh, Shu-Ting and Lin, Tsair-Fuh}, - year = 2011, - journal = {Water, Air, \& Soil Pollution}, - publisher = {Springer Science and Business Media LLC}, - volume = 223, - pages = {715–721}, - url = {http://dx.doi.org/10.1007/s11270-011-0896-4}, - issn = {1573-2932}, - doi = {10.1007/s11270-011-0896-4}, - number = 2} - -@Article{wang2019simultaneous, - title = {Simultaneous quantification of fifty-one odor-causing compounds in drinking water using gas chromatography-triple quadrupole tandem mass spectrometry}, - author = {Wang, Chunmiao and Yu, Jianwei and Guo, Qingyuan and Zhao, Yu and Cao, Nan and Yu, Zhiyong and Yang, Min}, - year = 2019, - journal = {Journal of Environmental Sciences}, - publisher = {Elsevier BV}, - volume = 79, - pages = {100–110}, - url = {http://dx.doi.org/10.1016/j.jes.2018.11.008}, - issn = {1001-0742}, - doi = {10.1016/j.jes.2018.11.008} -} - -@Article{reinl2021cyanobacterial, - title = {Cyanobacterial blooms in oligotrophic lakes: Shifting the high‐nutrient paradigm}, - author = {Reinl, Kaitlin L. and Brookes, Justin D. and Carey, Cayelan C. and Harris, Ted D. and Ibelings, Bas W. and Morales‐Williams, Ana M. and De Senerpont Domis, Lisette N. and Atkins, Karen S. and Isles, Peter D. F. and Mesman, Jorrit P. and North, Rebecca L. and Rudstam, Lars G. and Stelzer, Julio A. A. and Venkiteswaran, Jason J. and Yokota, Kiyoko and Zhan, Qing}, - year = 2021, - journal = {Freshwater Biology}, - publisher = {Wiley}, - volume = 66, - pages = {1846–1859}, - url = {http://dx.doi.org/10.1111/fwb.13791}, - issn = {1365-2427}, - doi = {10.1111/fwb.13791}, - number = 9} - -@Article{gerber1968geosmin, - title = {Geosmin, from microorganisms, is -1, 10-dimethyl--9-decalol}, - author = {Gerber, Nancy N.}, - year = 1968, - journal = {Tetrahedron Letters}, - publisher = {Elsevier BV}, - volume = 9, - pages = {2971–2974}, - url = {http://dx.doi.org/10.1016/S0040-4039(00)89625-2}, - issn = {0040-4039}, - doi = {10.1016/s0040-4039(00)89625-2}, - number = 25} - -@Article{buttery1976geosmin, - title = {Geosmin and methylisoborneol in garden soil}, - author = {Buttery, Ron G. and Garibaldi, John A.}, - year = 1976, - journal = {Journal of Agricultural and Food Chemistry}, - publisher = {American Chemical Society (ACS)}, - volume = 24, - pages = {1246–1247}, - url = {http://dx.doi.org/10.1021/jf60208a041}, - issn = {1520-5118}, - doi = {10.1021/jf60208a041}, - number = 6} - -@article{tung2006identification, - author = {Tung, S.C. and Lin, T.F. and Tseng, I.C. and Lin, H.M.}, - title = "{Identification of 2-MIB and geosmin producers in Feng-Shen reservoir in south Taiwan}", - journal = {Water Supply}, - volume = {6}, - number = {2}, - pages = {55-61}, - year = {2006}, - month = {03}, - issn = {1606-9749}, - doi = {10.2166/ws.2006.050}, - url = {https://doi.org/10.2166/ws.2006.050}, - eprint = {https://iwaponline.com/ws/article-pdf/6/2/55/418122/55.pdf} -} -@Article{pan2009actinomycetes, - title = {Actinomycetes and earthy-musty odorous compounds in brackish fishponds in Tianjin, China}, - author = {Pan, Yong and Xu, Lipu and Cao, Wenxuan and Yin, Shouren and Wang, Zongwei and Zhou, Qiaohong}, - year = 2009, - journal = {Water Science and Technology}, - publisher = {IWA Publishing}, - volume = 59, - pages = {1185–1194}, - url = {http://dx.doi.org/10.2166/wst.2009.035}, - issn = {1996-9732}, - doi = {10.2166/wst.2009.035}, - number = 6} - -@article{pan2009actinomycetes, - author = {Pan, Yong and Xu, Lipu and Cao, Wenxuan and Yin, Shouren and Wang, Zongwei and Zhou, Qiaohong}, - title = "{Actinomycetes and earthy-musty odorous compounds in brackish fishponds in Tianjin, China}", - journal = {Water Science and Technology}, - volume = {59}, - number = {6}, - pages = {1185-1194}, - year = {2009}, - month = {03}, - issn = {0273-1223}, - doi = {10.2166/wst.2009.035}, - url = {https://doi.org/10.2166/wst.2009.035}, - eprint = {https://iwaponline.com/wst/article-pdf/59/6/1185/435690/1185.pdf} -} - - - -@Article{kikuchi1983odorous, - title = {Odorous metabolites of fungi, Chaetomium globosum Kinze ex Fr. and Botrytis cinerea Pers. ex Fr., and a blue-green alga, Phormidium tenue (Meneghini) Gomont.}, - author = {KIKUCHI, TOHRU and KADOTA, SHIGETOSHI and SUEHARA, HISASHI and NISHI, ARASUKE and TSUBAKI, KEISUKE and YANO, HIROSHI and HARIMAYA, KENJI}, - year = 1983, - journal = {Chemical and Pharmaceutical Bulletin}, - publisher = {Pharmaceutical Society of Japan}, - volume = 31, - pages = {659–663}, - url = {http://dx.doi.org/10.1248/cpb.31.659}, - issn = {1347-5223}, - doi = {10.1248/cpb.31.659}, - number = 2} - -@Article{yamamoto1994volatile, - title = {Volatile Compounds Excreted by Myxobacteria Isolated from Lake Water and Sediments.}, - author = {YAMAMOTO, Yoko and TANAKA, Kazuaki and KOMORI, Noboru}, - year = 1994, - journal = {Japanese Journal of Limnology (Rikusuigaku Zasshi)}, - publisher = {The Japanese Society of Limnology}, - volume = 55, - pages = {241–245}, - url = {http://dx.doi.org/10.3739/rikusui.55.241}, - issn = {1882-4897}, - doi = {10.3739/rikusui.55.241}, - number = 4} - -@Article{wang2019the, - title = {The diversity, origin, and evolutionary analysis of geosmin synthase gene in cyanobacteria}, - author = {Wang, Zhongjie and Song, Gaofei and Li, Yeguang and Yu, Gongliang and Hou, Xiaoyu and Gan, Zixuan and Li, Renhui}, - year = 2019, - journal = {Science of The Total Environment}, - publisher = {Elsevier BV}, - volume = 689, - pages = {789–796}, - url = {http://dx.doi.org/10.1016/j.scitotenv.2019.06.468}, - issn = {0048-9697}, - doi = {10.1016/j.scitotenv.2019.06.468} -} - -@article{li2021gui, - author = {李秋华 and 韩丽彬 and 马一明 and 刘英龙}, - title = {贵州高原红枫水库蓝藻组成特征与环境因子之间的关系}, - volume = {39}, - number = {06}, - journal = {贵州师范大学学报}, - pages = {1-7+134}, - ISBN = {1004-5570}, - DOI = {10.16614/j.gznuj.zrb.2021.06.001}, - year = {2021} -} - -@article{ou2022lan, - author = {欧阳添 and 赵璐 and 纪璐璐 and 杨宋琪 and 郑保海 and 杜雨欣 and 李佳欣 and 李玉鑫 and 施军琼 and 吴忠兴}, - title = {蓝藻水华过程中优势种群演替模式、效应及驱动因子分析}, - volume = {43}, - number = {10}, - pages = {4480-4488}, - journal = {环境科学}, - ISBN = {0250-3301}, - DOI = {10.13227/j.hjkx.202112249}, - url = {https://kns-cnki-net.sjlib.cn/kcms/detail/11.1895.X.20220314.0848.004.html}, - year = {2022} -} - -@article{lu2021ha, - author = {路枫 and 李磊 and 齐青松 and 陆欣鑫 and 刘妍 and 范亚文}, - title = {哈尔滨城市河网丰水期浮游植物群落分布特征及驱动因子}, - volume = {42}, - number = {07}, - journal = {环境科学}, - pages = {3253-3262}, - ISBN = {0250-3301}, - DOI = {10.13227/j.hjkx.202011158}, - url = {https://kns-cnki-net.sjlib.cn/kcms/detail/11.1895.X.20210114.0909.016.html}, - year = {2021} -} - -@article{cheng2022huan, - author = {成建国 and 马力通 and 赵文渊 and 刘云颖}, - title = {环境因素对淡水浮丝藻生长及产生嗅味的影响}, - journal = {水生态学杂志}, - volume = {43}, - number = {02}, - pages = {70-76}, - ISBN = {1674-3075}, - DOI = {10.15928/j.1674-3075.202008180236}, - url = {https://kns-cnki-net.sjlib.cn/kcms/detail/42.1785.X.20210929.1324.001.html}, - year = {2022} -} - -@article{zhu2019ph, - author = {朱厚亚 and 刘波 and 张凌云 and 赵莉 and 张德明}, - title = {pH值和光照强度对颤藻生长及产嗅特征的影响}, - journal = {中国给水排水}, - volume = {35}, - number = {77-80+85}, - year = {2019}, - issn = {1000-4602}, - doi ={10.19853/j.zgjsps.1000-4602.2019.07.015} - } - -@article{yang2009dian, - author = {杨漪帆 and 朱永青 and 林卫青}, - title = {淀山湖蓝藻水华及其控制因子的模型研究}, - journal = {环境污染与防治}, - volume = {31}, - number = {58-63+88}, - year = {2009}, - issn = {1001-3865} - } - -@article{zhang2012nan, - author = {张怡 and 胡韧 and 肖利娟 and 韩博平}, - title = {南亚热带两座不同水文动态的水库浮游植物的功能类群演替比较}, - journal = {生态环境学报}, - volume = {21}, - number = {01}, - pages = {107-117}, - ISBN = {1674-5906}, - DOI = {10.16258/j.cnki.1674-5906.2012.01.007}, - year = {2012}, -} - -@article{guo2011guang, - author = {郭跃华 and 陈修康 and 张建林 and 韩博平 and 彭亮}, - title = {广东省高州水库水华过程中蓝藻群落的动态特征}, - journal = {湖泊科学}, - volume = {23}, - number = {04}, - pages = {527-533}, - ISBN = {1003-5427}, - doi = {10.18307/2011.0406}, - year = {2011} -} - -@Article{paerl2016mitigating, - title = {Mitigating cyanobacterial harmful algal blooms in aquatic ecosystems impacted by climate change and anthropogenic nutrients}, - author = {Paerl, Hans W. and Gardner, Wayne S. and Havens, Karl E. and Joyner, Alan R. and McCarthy, Mark J. and Newell, Silvia E. and Qin, Boqiang and Scott, J. Thad}, - year = 2016, - journal = {Harmful Algae}, - publisher = {Elsevier BV}, - volume = 54, - pages = {213–222}, - url = {http://dx.doi.org/10.1016/j.hal.2015.09.009}, - issn = {1568-9883}, - doi = {10.1016/j.hal.2015.09.009} -} - -@Article{huang2020quantifying, - title = {Quantifying the cost-effectiveness of nutrient-removal strategies for a lowland rural watershed: Insights from process-based modeling}, - author = {Huang, Jiacong and Chen, Qiuwen and Peng, Jian and Gao, Junfeng}, - year = 2020, - journal = {Ecological Modelling}, - publisher = {Elsevier BV}, - volume = 431, - pages = 109123, - url = {http://dx.doi.org/10.1016/j.ecolmodel.2020.109123}, - issn = {0304-3800}, - doi = {10.1016/j.ecolmodel.2020.109123} -} - -@Article{prokopy2019adoption, - title = {Adoption of agricultural conservation practices in the United States: Evidence from 35 years of quantitative literature}, - author = {Prokopy, L.S. and Floress, K. and Arbuckle, J.G. and Church, S.P. and Eanes, F.R. and Gao, Y. and Gramig, B.M. and Ranjan, P. and Singh, A.S.}, - year = 2019, - journal = {Journal of Soil and Water Conservation}, - publisher = {Soil and Water Conservation Society}, - volume = 74, - pages = {520–534}, - url = {http://dx.doi.org/10.2489/jswc.74.5.520}, - issn = {1941-3300}, - doi = {10.2489/jswc.74.5.520}, - number = 5} - -@Article{orihel2017internal, - title = {Internal phosphorus loading in Canadian fresh waters: a critical review and data analysis}, - author = {Orihel, Diane M. and Baulch, Helen M. and Casson, Nora J. and North, Rebecca L. and Parsons, Chris T. and Seckar, Dalila C.M. and Venkiteswaran, Jason J.}, - year = 2017, - journal = {Canadian Journal of Fisheries and Aquatic Sciences}, - publisher = {Canadian Science Publishing}, - volume = 74, - pages = {2005–2029}, - url = {http://dx.doi.org/10.1139/cjfas-2016-0500}, - issn = {1205-7533}, - doi = {10.1139/cjfas-2016-0500}, - number = 12} - -@Article{immers2015fighting, - title = {Fighting internal phosphorus loading: An evaluation of the large scale application of gradual Fe-addition to a shallow peat lake}, - author = {Immers, A.K. and Bakker, E.S. and Van Donk, E. and Ter Heerdt, G.N.J. and Geurts, J.J.M. and Declerck, S.A.J.}, - year = 2015, - journal = {Ecological Engineering}, - publisher = {Elsevier BV}, - volume = 83, - pages = {78–89}, - url = {http://dx.doi.org/10.1016/j.ecoleng.2015.05.034}, - issn = {0925-8574}, - doi = {10.1016/j.ecoleng.2015.05.034} -} - -@Article{gensemer1999the, - title = {The Bioavailability and Toxicity of Aluminum in Aquatic Environments}, - author = {Gensemer, Robert W. and Playle, Richard C.}, - year = 1999, - journal = {Critical Reviews in Environmental Science and Technology}, - publisher = {Informa UK Limited}, - volume = 29, - pages = {315–450}, - url = {http://dx.doi.org/10.1080/10643389991259245}, - issn = {1547-6537}, - doi = {10.1080/10643389991259245}, - number = 4} - -@phdthesis{zhou2017hun, - author = {周子振}, - title = {混合充氧对分层水库水质改善及微生物种群结构调控研究}, - university = {西安建筑科技大学}, - type = {博士}, - year = {2017}, - type = {Thesis} -} - - -@Article{ma2015study, - title = {Study of the application of the water-lifting aerators to improve the water quality of a stratified, eutrophicated reservoir}, - author = {Ma, Wei-Xing and Huang, Ting-Lin and Li, Xuan}, - year = 2015, - journal = {Ecological Engineering}, - publisher = {Elsevier BV}, - volume = 83, - pages = {281–290}, - url = {http://dx.doi.org/10.1016/j.ecoleng.2015.06.022}, - issn = {0925-8574}, - doi = {10.1016/j.ecoleng.2015.06.022} -} - -@Article{zhang2020waterlifting, - title = {Water-lifting aerator reduces algal growth in stratified drinking water reservoir: Novel insights into algal metabolic profiling and engineering applications}, - author = {Zhang, Haihan and Yan, Miaomiao and Huang, Tinglin and Huang, Xin and Yang, Shangye and Li, Nan and Wang, Na}, - year = 2020, - journal = {Environmental Pollution}, - publisher = {Elsevier BV}, - volume = 266, - pages = 115384, - url = {http://dx.doi.org/10.1016/j.envpol.2020.115384}, - issn = {0269-7491}, - doi = {10.1016/j.envpol.2020.115384} -} - -@phdthesis{li2022liu, - author = {李波}, - title = {流速对南水北调中线干渠浮游植物群落演替与生长的影响}, - university = {大连海洋大学}, - type = {硕士}, - keywords = {流速 南水北调中线干渠 浮游植物 群落演替 生长}, - DOI = {10.27821/d.cnki.gdlhy.2022.000070}, - year = {2022} -} - -@Article{ou2012immediate, - title = {Immediate and long-term impacts of potassium permanganate on photosynthetic activity, survival and microcystin-LR release risk of Microcystis aeruginosa}, - author = {Ou, Huase and Gao, Naiyun and Wei, Chaohai and Deng, Yang and Qiao, Junlian}, - year = 2012, - journal = {Journal of Hazardous Materials}, - publisher = {Elsevier BV}, - volume = {219–220}, - pages = {267–275}, - url = {http://dx.doi.org/10.1016/j.jhazmat.2012.04.006}, - issn = {0304-3894}, - doi = {10.1016/j.jhazmat.2012.04.006} -} - -@phdthesis{gao2016shi, - author = {高菡}, - title = { 食蚊鱼（Gambusia affinis）捕食与铜绿微囊藻（Microcystis aeruginosa）毒性对两种浮游动物抗性进化的作用}, - university = {华东师范大学}, - type = {硕士}, - year = {2016}, - type = {Thesis} -} - -@phdthesis{huang2020wei, - author = {黄磊}, - title = {微纳米曝气组合技术应用于东牙溪水库水质改善研究}, - university = {福建师范大学}, - type = {硕士}, - DOI = {10.27019/d.cnki.gfjsu.2020.001998}, - year = {2020}, - type = {Thesis} -} - -@Article{boon1994consumption, - title = {Consumption of cyanobacteria by freshwater zooplankton: Implications for the success of “top-down” control of cyanobacterial blooms in Australia}, - author = {Boon, PI and Bunn, SE and Green, JD and Shiel, RJ}, - year = 1994, - journal = {Marine and Freshwater Research}, - publisher = {CSIRO Publishing}, - volume = 45, - pages = 875, - url = {http://dx.doi.org/10.1071/MF9940875}, - issn = {1323-1650}, - doi = {10.1071/mf9940875}, - number = 5} - -@Article{yang2006morphological, - title = {Morphological Response of Microcystis aeruginosa to Grazing by Different Sorts of Zooplankton}, - author = {Yang, Zhou and Kong, Fanxiang and Shi, Xiaoli and Cao, Huansheng}, - year = 2006, - journal = {Hydrobiologia}, - publisher = {Springer Science and Business Media LLC}, - volume = 563, - pages = {225–230}, - url = {http://dx.doi.org/10.1007/s10750-005-0008-9}, - issn = {1573-5117}, - doi = {10.1007/s10750-005-0008-9}, - number = 1} - -@phdthesis{tian2017hu, - author = {田旺}, - title = {湖泊浮游生物群落对环境和生物多样性的响应机制}, - university = {华北电力大学(北京)}, - type = {博士}, - year = {2017}, - type = {Thesis} -} - -@Article{mohamed2017macrophytescyanobacteria, - title = {Macrophytes-cyanobacteria allelopathic interactions and their implications for water resources management—A review}, - author = {Mohamed, Zakaria A.}, - year = 2017, - journal = {Limnologica}, - publisher = {Elsevier BV}, - volume = 63, - pages = {122–132}, - url = {http://dx.doi.org/10.1016/j.limno.2017.02.006}, - issn = {0075-9511}, - doi = {10.1016/j.limno.2017.02.006} -} - -@Article{preiner2020effects, - title = {Effects of macrophytes on ecosystem metabolism and net nutrient uptake in a groundwater fed lowland river}, - author = {Preiner, Stefan and Dai, Yanran and Pucher, Matthias and Reitsema, Rosanne E. and Schoelynck, Jonas and Meire, Patrick and Hein, Thomas}, - year = 2020, - journal = {Science of The Total Environment}, - publisher = {Elsevier BV}, - volume = 721, - pages = 137620, - url = {http://dx.doi.org/10.1016/j.scitotenv.2020.137620}, - issn = {0048-9697}, - doi = {10.1016/j.scitotenv.2020.137620} -} - -@Article{finlay2013human, - title = {Human Influences on Nitrogen Removal in Lakes}, - author = {Finlay, Jacques C. and Small, Gaston E. and Sterner, Robert W.}, - year = 2013, - journal = {Science}, - publisher = {American Association for the Advancement of Science (AAAS)}, - volume = 342, - pages = {247–250}, - url = {http://dx.doi.org/10.1126/science.1242575}, - issn = {1095-9203}, - doi = {10.1126/science.1242575}, - number = 6155} - -@Article{frings2014lack, - title = {Lack of steady-state in the global biogeochemical Si cycle: emerging evidence from lake Si sequestration}, - author = {Frings, Patrick J. and Clymans, Wim and Jeppesen, Erik and Lauridsen, Torben L. and Struyf, Eric and Conley, Daniel J.}, - year = 2014, - journal = {Biogeochemistry}, - publisher = {Springer Science and Business Media LLC}, - volume = 117, - pages = {255–277}, - url = {http://dx.doi.org/10.1007/s10533-013-9944-z}, - issn = {1573-515X}, - doi = {10.1007/s10533-013-9944-z}, - number = {2–3} -} - -@Article{kellerman2014chemodiversity, - title = {Chemodiversity of dissolved organic matter in lakes driven by climate and hydrology}, - author = {Kellerman, Anne M. and Dittmar, Thorsten and Kothawala, Dolly N. and Tranvik, Lars J.}, - year = 2014, - journal = {Nature Communications}, - publisher = {Springer Science and Business Media LLC}, - volume = 5, - url = {http://dx.doi.org/10.1038/ncomms4804}, - issn = {2041-1723}, - doi = {10.1038/ncomms4804}, - number = 1} - -@Article{messager2016estimating, - title = {Estimating the volume and age of water stored in global lakes using a geo-statistical approach}, - author = {Messager, Mathis Loïc and Lehner, Bernhard and Grill, Günther and Nedeva, Irena and Schmitt, Oliver}, - year = 2016, - journal = {Nature Communications}, - publisher = {Springer Science and Business Media LLC}, - volume = 7, - url = {http://dx.doi.org/10.1038/ncomms13603}, - issn = {2041-1723}, - doi = {10.1038/ncomms13603}, - number = 1} - -@Article{ninogarcia2016interactions, - title = {Interactions between hydrology and water chemistry shape bacterioplankton biogeography across boreal freshwater networks}, - author = {Niño-García, Juan Pablo and Ruiz-González, Clara and del Giorgio, Paul A}, - year = 2016, - journal = {The ISME Journal}, - publisher = {Springer Science and Business Media LLC}, - volume = 10, - pages = {1755–1766}, - url = {http://dx.doi.org/10.1038/ismej.2015.226}, - issn = {1751-7370}, - doi = {10.1038/ismej.2015.226}, - number = 7} - -@Article{silva2014drivers, - title = {Drivers of phytoplankton, bacterioplankton, and zooplankton carbon biomass in tropical hydroelectric reservoirs}, - author = {Silva, Lúcia H.S. and Huszar, Vera L.M. and Marinho, Marcelo M. and Rangel, Luciana M. and Brasil, Jandeson and Domingues, Carolina D. and Branco, Christina C. and Roland, Fábio}, - year = 2014, - journal = {Limnologica}, - publisher = {Elsevier BV}, - volume = 48, - pages = {1–10}, - url = {http://dx.doi.org/10.1016/j.limno.2014.04.004}, - issn = {0075-9511}, - doi = {10.1016/j.limno.2014.04.004} -} - -@Article{maavara2020river, - title = {River dam impacts on biogeochemical cycling}, - author = {Maavara, Taylor and Chen, Qiuwen and Van Meter, Kimberly and Brown, Lee E. and Zhang, Jianyun and Ni, Jinren and Zarfl, Christiane}, - year = 2020, - journal = {Nature Reviews Earth \& Environment}, - publisher = {Springer Science and Business Media LLC}, - volume = 1, - pages = {103–116}, - url = {http://dx.doi.org/10.1038/s43017-019-0019-0}, - issn = {2662-138X}, - doi = {10.1038/s43017-019-0019-0}, - number = 2} - -@Article{abia2017microbial, - title = {Microbial Remobilisation on Riverbed Sediment Disturbance in Experimental Flumes and a Human-Impacted River: Implication for Water Resource Management and Public Health in Developing Sub-Saharan African Countries}, - author = {Abia, Akebe and James, Chris and Ubomba-Jaswa, Eunice and Benteke Momba, Maggy}, - year = 2017, - journal = {International Journal of Environmental Research and Public Health}, - publisher = {MDPI AG}, - volume = 14, - pages = 306, - url = {http://dx.doi.org/10.3390/ijerph14030306}, - issn = {1660-4601}, - doi = {10.3390/ijerph14030306}, - number = 3} - -@Article{aguilar2020the, - title = {The balance between deterministic and stochastic processes in structuring lake bacterioplankton community over time}, - author = {Aguilar, Pablo and Sommaruga, Ruben}, - year = 2020, - journal = {Molecular Ecology}, - publisher = {Wiley}, - volume = 29, - pages = {3117–3130}, - url = {http://dx.doi.org/10.1111/mec.15538}, - issn = {1365-294X}, - doi = {10.1111/mec.15538}, - number = 16} - -@Article{aguirrezabalacampano2021overall, - title = {Overall spatiotemporal dynamics of greenhouse gasses and oxygen in two subtropical reservoirs with contrasting trophic states}, - author = {Aguirrezabala-Campano, Teresa and Gonzalez-Valencia, Rodrigo and Cervantes, Francisco J. and Thalasso, Frédéric}, - year = 2021, - journal = {Water Research}, - publisher = {Elsevier BV}, - volume = 196, - pages = 117056, - url = {http://dx.doi.org/10.1016/j.watres.2021.117056}, - issn = {0043-1354}, - doi = {10.1016/j.watres.2021.117056} -} - -@Article{astorga2011distance, - title = {Distance decay of similarity in freshwater communities: do macro‐ and microorganisms follow the same rules?}, - author = {Astorga, Anna and Oksanen, Jari and Luoto, Miska and Soininen, Janne and Virtanen, Risto and Muotka, Timo}, - year = 2011, - journal = {Global Ecology and Biogeography}, - publisher = {Wiley}, - volume = 21, - pages = {365–375}, - url = {http://dx.doi.org/10.1111/j.1466-8238.2011.00681.x}, - issn = {1466-8238}, - doi = {10.1111/j.1466-8238.2011.00681.x}, - number = 3} - -@Article{banerjee2018kolmogorovsmirnov, - title = {Kolmogorov–Smirnov test for life test data with hybrid censoring}, - author = {Banerjee, Buddhananda and Pradhan, Biswabrata}, - year = 2018, - journal = {Communications in Statistics - Theory and Methods}, - publisher = {Informa UK Limited}, - volume = 47, - pages = {2590–2604}, - url = {http://dx.doi.org/10.1080/03610926.2016.1205616}, - issn = {1532-415X}, - doi = {10.1080/03610926.2016.1205616}, - number = 11} - -@Article{belardi1989the, - title = {The Application of Chemically Modified Fused Silica Fibers in the Extraction of Organics from Water Matrix Samples and their Rapid Transfer to Capillary Columns}, - author = {Belardi, Robert P. and Pawliszyn, Janusz B.}, - year = 1989, - journal = {Water Quality Research Journal}, - publisher = {IWA Publishing}, - volume = 24, - pages = {179–191}, - url = {http://dx.doi.org/10.2166/wqrj.1989.010}, - issn = {2408-9443}, - doi = {10.2166/wqrj.1989.010}, - number = 1} - -@Article{berdjeb2018shortterm, - title = {Short-term dynamics and interactions of marine protist communities during the spring–summer transition}, - author = {Berdjeb, Lyria and Parada, Alma and Needham, David M. and Fuhrman, Jed A.}, - year = 2018, - journal = {The ISME Journal}, - publisher = {Springer Science and Business Media LLC}, - volume = 12, - pages = {1907–1917}, - url = {http://dx.doi.org/10.1038/s41396-018-0097-x}, - issn = {1751-7370}, - doi = {10.1038/s41396-018-0097-x}, - number = 8} - -@Article{berry2006microbial, - title = {Microbial ecology of drinking water distribution systems}, - author = {Berry, David and Xi, Chuanwu and Raskin, Lutgarde}, - year = 2006, - journal = {Current Opinion in Biotechnology}, - publisher = {Elsevier BV}, - volume = 17, - pages = {297–302}, - url = {http://dx.doi.org/10.1016/j.copbio.2006.05.007}, - issn = {0958-1669}, - doi = {10.1016/j.copbio.2006.05.007}, - number = 3} - -@Article{debie2012body, - title = {Body size and dispersal mode as key traits determining metacommunity structure of aquatic organisms}, - author = {De Bie, T. and De Meester, L. and Brendonck, L. and Martens, K. and Goddeeris, B. and Ercken, D. and Hampel, H. and Denys, L. and Vanhecke, L. and Van der Gucht, K. and Van Wichelen, J. and Vyverman, W. and Declerck, S. A. J.}, - year = 2012, - journal = {Ecology Letters}, - publisher = {Wiley}, - volume = 15, - pages = {740–747}, - url = {http://dx.doi.org/10.1111/j.1461-0248.2012.01794.x}, - issn = {1461-0248}, - doi = {10.1111/j.1461-0248.2012.01794.x}, - number = 7, - editor = {Hillebrand, Helmut} -} - -@Article{boenigk2004strainspecific, - title = {Strain-Specific Differences in the Grazing Sensitivities of Closely Related Ultramicrobacteria Affiliated with the Polynucleobacter Cluster}, - author = {Boenigk, Jens and Stadler, Peter and Wiedlroither, Anneliese and Hahn, Martin W.}, - year = 2004, - journal = {Applied and Environmental Microbiology}, - publisher = {American Society for Microbiology}, - volume = 70, - pages = {5787–5793}, - url = {http://dx.doi.org/10.1128/aem.70.10.5787-5793.2004}, - issn = {1098-5336}, - doi = {10.1128/aem.70.10.5787-5793.2004}, - number = 10} - -@Article{bordet2017influence, - title = {Influence of light and mixing regime on bloom‐forming phytoplankton in a subtropical reservoir}, - author = {Bordet, F. and Fontanarrosa, M. S. and O’Farrell, I.}, - year = 2017, - journal = {River Research and Applications}, - publisher = {Wiley}, - volume = 33, - pages = {1315–1326}, - url = {http://dx.doi.org/10.1002/rra.3189}, - issn = {1535-1467}, - doi = {10.1002/rra.3189}, - number = 8} - -@Article{bortolini2017environmental, - title = {Environmental and spatial processes influencing phytoplankton biomass along a reservoirs‐river‐floodplain lakes gradient: A metacommunity approach}, - author = {Bortolini, Jascieli Carla and Pineda, Alfonso and Rodrigues, Luzia Cleide and Jati, Susicley and Velho, Luiz Felipe Machado}, - year = 2017, - journal = {Freshwater Biology}, - publisher = {Wiley}, - volume = 62, - pages = {1756–1767}, - url = {http://dx.doi.org/10.1111/fwb.12986}, - issn = {1365-2427}, - doi = {10.1111/fwb.12986}, - number = 10} - -@Article{brett2007a, - title = {A review and reassessment of lake phosphorus retention and the nutrient loading concept}, - author = {BRETT, MICHAEL T. and BENJAMIN, MARK M.}, - year = 2007, - journal = {Freshwater Biology}, - publisher = {Wiley}, - volume = 53, - pages = {194–211}, - url = {http://dx.doi.org/10.1111/j.1365-2427.2007.01862.x}, - issn = {1365-2427}, - doi = {10.1111/j.1365-2427.2007.01862.x}, - number = 1} - -@Article{bruesewitz2012incorporating, - title = {Incorporating spatial variation of nitrification and denitrification rates into whole‐lake nitrogen dynamics}, - author = {Bruesewitz, Denise A. and Tank, Jennifer L. and Hamilton, Stephen K.}, - year = 2012, - journal = {Journal of Geophysical Research: Biogeosciences}, - publisher = {American Geophysical Union (AGU)}, - volume = 117, - url = {http://dx.doi.org/10.1029/2012JG002006}, - issn = {0148-0227}, - doi = {10.1029/2012jg002006}, - number = {G3} -} - -@Article{callahan2016dada2, - title = {DADA2: High-resolution sample inference from Illumina amplicon data}, - author = {Callahan, Benjamin J and McMurdie, Paul J and Rosen, Michael J and Han, Andrew W and Johnson, Amy Jo A and Holmes, Susan P}, - year = 2016, - journal = {Nature Methods}, - publisher = {Springer Science and Business Media LLC}, - volume = 13, - pages = {581–583}, - url = {http://dx.doi.org/10.1038/nmeth.3869}, - issn = {1548-7105}, - doi = {10.1038/nmeth.3869}, - number = 7} - -@Article{canham2012nitrogen, - title = {Nitrogen deposition and lake nitrogen concentrations: a regional analysis of terrestrial controls and aquatic linkages}, - author = {Canham, Charles D. and Pace, Michael L. and Weathers, Kathleen C. and McNeil, Edward W. and Bedford, Barbara L. and Murphy, Lora and Quinn, Scott}, - year = 2012, - journal = {Ecosphere}, - publisher = {Wiley}, - volume = 3, - pages = {1–16}, - url = {http://dx.doi.org/10.1890/es12-00090.1}, - issn = {2150-8925}, - doi = {10.1890/es12-00090.1}, - number = 7} - -@Article{casero2014characterization, - title = {Characterization of saxitoxin production and release and phylogeny of sxt genes in paralytic shellfish poisoning toxin-producing Aphanizomenon gracile}, - author = {Casero, María Cristina and Ballot, Andreas and Agha, Ramsy and Quesada, Antonio and Cirés, Samuel}, - year = 2014, - journal = {Harmful Algae}, - publisher = {Elsevier BV}, - volume = 37, - pages = {28–37}, - url = {http://dx.doi.org/10.1016/j.hal.2014.05.006}, - issn = {1568-9883}, - doi = {10.1016/j.hal.2014.05.006} -} - -@Article{chen2022mixing, - title = {Mixing regime shapes the community assembly process, microbial interaction and proliferation of cyanobacterial species {{\textit{Planktothrix}}} in a stratified lake}, - author = {Chen, Junwen and Liu, Huacong and Bai, Yaohui and Qi, Jing and Qi, Weixiao and Liu, Huijuan and Peng, Jianfeng and Qu, Jiuhui}, - year = 2022, - journal = {Journal of Environmental Sciences}, - publisher = {Elsevier BV}, - volume = 115, - pages = {103–113}, - url = {http://dx.doi.org/10.1016/j.jes.2021.07.001}, - issn = {1001-0742}, - doi = {10.1016/j.jes.2021.07.001} -} - -@Article{comstock2022bacterioplankton, - title = {Bacterioplankton communities reveal horizontal and vertical influence of an Island Mass Effect}, - author = {Comstock, Jacqueline and Nelson, Craig E. and James, Anna and Wear, Emma and Baetge, Nicholas and Remple, Kristina and Juknavorian, Amethyst and Carlson, Craig A.}, - year = 2022, - journal = {Environmental Microbiology}, - publisher = {Wiley}, - volume = 24, - pages = {4193–4208}, - url = {http://dx.doi.org/10.1111/1462-2920.16092}, - issn = {1462-2920}, - doi = {10.1111/1462-2920.16092}, - number = 9} - -@Article{cottenie2005integrating, - title = {Integrating environmental and spatial processes in ecological community dynamics}, - author = {Cottenie, Karl}, - year = 2005, - journal = {Ecology Letters}, - publisher = {Wiley}, - volume = 8, - pages = {1175–1182}, - url = {http://dx.doi.org/10.1111/j.1461-0248.2005.00820.x}, - issn = {1461-0248}, - doi = {10.1111/j.1461-0248.2005.00820.x}, - number = 11} - -@Article{curtis1995dissolved, - title = {Dissolved organic matter quantity and quality from freshwater and saltwater lakes in east-central Alberta}, - author = {Curtis, P. J. and Adams, H. E.}, - year = 1995, - journal = {Biogeochemistry}, - publisher = {Springer Science and Business Media LLC}, - volume = 30, - pages = {59–76}, - url = {http://dx.doi.org/10.1007/bf02181040}, - issn = {1573-515X}, - doi = {10.1007/bf02181040}, - number = 1} - -@Article{deoliveira2019morphological, - title = {Morphological and molecular characterization of cyanobacterial isolates from the mouth of the Amazon River}, - author = {DE OLIVEIRA, ELANE D. CUNHA and DA CUNHA, ALAN C. and DA SILVA, NATALINA B. and CASTELO-BRANCO, RAQUEL and MORAIS, JOÃO and SCHNEIDER, MARIA PAULA C. and FAUSTINO, SILVIA M. M. and RAMOS, VITOR and VASCONCELOS, VITOR}, - year = 2019, - journal = {Phytotaxa}, - publisher = {Magnolia Press}, - volume = 387, - pages = 269, - url = {http://dx.doi.org/10.11646/phytotaxa.387.4.1}, - issn = {1179-3155}, - doi = {10.11646/phytotaxa.387.4.1}, - number = 4} - -@Article{denef2017lake, - title = {Lake Bacterial Assemblage Composition Is Sensitive to Biological Disturbance Caused by an Invasive Filter Feeder}, - author = {Denef, Vincent J. and Carrick, Hunter J. and Cavaletto, Joann and Chiang, Edna and Johengen, Thomas H. and Vanderploeg, Henry A.}, - year = 2017, - journal = {mSphere}, - publisher = {American Society for Microbiology}, - volume = 2, - url = {http://dx.doi.org/10.1128/mSphere.00189-17}, - issn = {2379-5042}, - doi = {10.1128/msphere.00189-17}, - number = 3, - editor = {Kent, Angela D.} -} - -@Article{dickman1969some, - title = {SOME EFFECTS OF LAKE RENEWAL ON PHYTOPLANKTON PRODUCTIVITY AND SPECIES COMPOSITION1}, - author = {Dickman, Mike}, - year = 1969, - journal = {Limnology and Oceanography}, - publisher = {Wiley}, - volume = 14, - pages = {660–666}, - url = {http://dx.doi.org/10.4319/lo.1969.14.5.0660}, - issn = {1939-5590}, - doi = {10.4319/lo.1969.14.5.0660}, - number = 5} - -@Article{drakare2002primary, - title = {Primary production and phytoplankton composition in relation to DOC input and bacterioplankton production in humic Lake Örträsket}, - author = {Drakare, Stina and Blomqvist, Peter and Bergström, Ann‐Kristin and Jansson, Mats}, - year = 2002, - journal = {Freshwater Biology}, - publisher = {Wiley}, - volume = 47, - pages = {41–52}, - url = {http://dx.doi.org/10.1046/j.1365-2427.2002.00779.x}, - issn = {1365-2427}, - doi = {10.1046/j.1365-2427.2002.00779.x}, - number = 1} - -@Article{du2021geology, - title = {Geology, environment, and life in the deepest part of the world’s oceans}, - author = {Du, Mengran and Peng, Xiaotong and Zhang, Haibin and Ye, Cong and Dasgupta, Shamik and Li, Jiwei and Li, Jiangtao and Liu, Shuangquan and Xu, Hengchao and Chen, Chuanxu and Jing, Hongmei and Xu, Hongzhou and Liu, Jun and He, Shunping and He, Lisheng and Cai, Shanya and Chen, Shun and Ta, Kaiwen}, - year = 2021, - journal = {The Innovation}, - publisher = {Elsevier BV}, - volume = 2, - pages = 100109, - url = {http://dx.doi.org/10.1016/j.xinn.2021.100109}, - issn = {2666-6758}, - doi = {10.1016/j.xinn.2021.100109}, - number = 2} - -@Article{dupont2016differences, - title = {Differences in soil micro‐eukaryotic communities over soil pH gradients are strongly driven by parasites and saprotrophs}, - author = {Dupont, A. Ö. C. and Griffiths, R. I. and Bell, T. and Bass, D.}, - year = 2016, - journal = {Environmental Microbiology}, - publisher = {Wiley}, - volume = 18, - pages = {2010–2024}, - url = {http://dx.doi.org/10.1111/1462-2920.13220}, - issn = {1462-2920}, - doi = {10.1111/1462-2920.13220}, - number = 6} - -@Article{finlay2002global, - title = {Global Dispersal of Free-Living Microbial Eukaryote Species}, - author = {Finlay, Bland J.}, - year = 2002, - journal = {Science}, - publisher = {American Association for the Advancement of Science (AAAS)}, - volume = 296, - pages = {1061–1063}, - url = {http://dx.doi.org/10.1126/science.1070710}, - issn = {1095-9203}, - doi = {10.1126/science.1070710}, - number = 5570} - -@Article{gotelli2006null, - title = {Null Versus Neutral Models: What’s The Difference?}, - author = {Gotelli, N. J. and McGill, Brian J.}, - year = 2006, - journal = {Ecography}, - publisher = {Wiley}, - volume = 29, - pages = {793–800}, - url = {http://dx.doi.org/10.1111/j.2006.0906-7590.04714.x}, - issn = {1600-0587}, - doi = {10.1111/j.2006.0906-7590.04714.x}, - number = 5} - -@Article{guidi2016plankton, - title = {Plankton networks driving carbon export in the oligotrophic ocean}, - author = {Guidi, Lionel and Chaffron, Samuel and Bittner, Lucie and Eveillard, Damien and Larhlimi, Abdelhalim and Roux, Simon and Darzi, Youssef and Audic, Stephane and Berline, Léo and Brum, Jennifer R. and Coelho, Luis Pedro and Espinoza, Julio Cesar Ignacio and Malviya, Shruti and Sunagawa, Shinichi and Dimier, Céline and Kandels-Lewis, Stefanie and Picheral, Marc and Poulain, Julie and Searson, Sarah and Stemmann, Lars and Not, Fabrice and Hingamp, Pascal and Speich, Sabrina and - Follows, Mick and Karp-Boss, Lee and Boss, Emmanuel and Ogata, Hiroyuki and Pesant, Stephane and Weissenbach, Jean and Wincker, Patrick and Acinas, Silvia G. and Bork, Peer and de Vargas, Colomban and Iudicone, Daniele and Sullivan, Matthew B. and Raes, Jeroen and Karsenti, Eric and Bowler, Chris and Gorsky, Gabriel}, - year = 2016, - journal = {Nature}, - publisher = {Springer Science and Business Media LLC}, - volume = 532, - pages = {465–470}, - url = {http://dx.doi.org/10.1038/nature16942}, - issn = {1476-4687}, - doi = {10.1038/nature16942}, - number = 7600} - -@Article{ha2015seasonal, - title = {Seasonal Changes in Mycosporine-Like Amino Acid Production Rate with Respect to Natural Phytoplankton Species Composition}, - author = {Ha, Sun-Yong and Lee, Yeonjung and Kim, Min-Seob and Kumar, K. and Shin, Kyung-Hoon}, - year = 2015, - journal = {Marine Drugs}, - publisher = {MDPI AG}, - volume = 13, - pages = {6740–6758}, - url = {http://dx.doi.org/10.3390/md13116740}, - issn = {1660-3397}, - doi = {10.3390/md13116740}, - number = 11} - -@Article{hanson2012beyond, - title = {Beyond biogeographic patterns: processes shaping the microbial landscape}, - author = {Hanson, China A. and Fuhrman, Jed A. and Horner-Devine, M. Claire and Martiny, Jennifer B. H.}, - year = 2012, - journal = {Nature Reviews Microbiology}, - publisher = {Springer Science and Business Media LLC}, - volume = 10, - pages = {497–506}, - url = {http://dx.doi.org/10.1038/nrmicro2795}, - issn = {1740-1534}, - doi = {10.1038/nrmicro2795}, - number = 7} - -@Article{heikkinen2010testing, - title = {Testing hypotheses on shape and distribution of ecological response curves}, - author = {Heikkinen, Juha and Mäkipää, Raisa}, - year = 2010, - journal = {Ecological Modelling}, - publisher = {Elsevier BV}, - volume = 221, - pages = {388–399}, - url = {http://dx.doi.org/10.1016/j.ecolmodel.2009.10.030}, - issn = {0304-3800}, - doi = {10.1016/j.ecolmodel.2009.10.030}, - number = 3} - -@Article{heino2013environmental, - title = {Environmental heterogeneity, dispersal mode, and co‐occurrence in stream macroinvertebrates}, - author = {Heino, Jani}, - year = 2013, - journal = {Ecology and Evolution}, - publisher = {Wiley}, - volume = 3, - pages = {344–355}, - url = {http://dx.doi.org/10.1002/ece3.470}, - issn = {2045-7758}, - doi = {10.1002/ece3.470}, - number = 2} - -@Article{heino2014metacommunity, - title = {Metacommunity organisation, spatial extent and dispersal in aquatic systems: patterns, processes and prospects}, - author = {Heino, Jani and Melo, Adriano S. and Siqueira, Tadeu and Soininen, Janne and Valanko, Sebastian and Bini, Luis Mauricio}, - year = 2014, - journal = {Freshwater Biology}, - publisher = {Wiley}, - volume = 60, - pages = {845–869}, - url = {http://dx.doi.org/10.1111/fwb.12533}, - issn = {1365-2427}, - doi = {10.1111/fwb.12533}, - number = 5} - -@Article{hong2016characterization, - title = {Characterization of a Korean Domestic Cyanobacterium Limnothrix sp. KNUA012 for Biofuel Feedstock}, - author = {Hong, Ji Won, and Jo, Seung-Woo, and Kim, Oh Hong, and Jeong, Mi Rang, and Kim, Hyun, and Park, Kyung Mok, and Lee, Kyoung-In, and Yoon, Ho-Sung,}, - year = 2016, - journal = {Journal of Life Science}, - publisher = {한국생명과학회}, - volume = 26, - pages = {460--467}, - number = 4} - -@Article{huber2020environmental, - title = {Environmental heterogeneity determines the ecological processes that govern bacterial metacommunity assembly in a floodplain river system}, - author = {Huber, Paula and Metz, Sebastian and Unrein, Fernando and Mayora, Gisela and Sarmento, Hugo and Devercelli, Melina}, - year = 2020, - journal = {The ISME Journal}, - publisher = {Springer Science and Business Media LLC}, - volume = 14, - pages = {2951–2966}, - url = {http://dx.doi.org/10.1038/s41396-020-0723-2}, - issn = {1751-7370}, - doi = {10.1038/s41396-020-0723-2}, - number = 12} - -@Article{hugerth2015metagenomeassembled, - title = {Metagenome-assembled genomes uncover a global brackish microbiome}, - author = {Hugerth, Luisa W. and Larsson, John and Alneberg, Johannes and Lindh, Markus V. and Legrand, Catherine and Pinhassi, Jarone and Andersson, Anders F.}, - year = 2015, - journal = {Genome Biology}, - publisher = {Springer Science and Business Media LLC}, - volume = 16, - url = {http://dx.doi.org/10.1186/s13059-015-0834-7}, - issn = {1474-760X}, - doi = {10.1186/s13059-015-0834-7}, - number = 1} - -@Article{izaguirre1998a, - title = {A pseudanabaena species from Castaic Lake, California, that produces 2-methylisoborneol}, - author = {Izaguirre, George and Taylor, William D}, - year = 1998, - journal = {Water Research}, - publisher = {Elsevier BV}, - volume = 32, - pages = {1673–1677}, - url = {http://dx.doi.org/10.1016/S0043-1354(97)00379-5}, - issn = {0043-1354}, - doi = {10.1016/s0043-1354(97)00379-5}, - number = 5} - -@Article{jones2013seasonality, - title = {Seasonality and disturbance: annual pattern and response of the bacterial and microbial eukaryotic assemblages in a freshwater ecosystem}, - author = {Jones, Adriane Clark and Liao, T. S. Vivian and Najar, Fares Z. and Roe, Bruce A. and Hambright, K. David and Caron, David A.}, - year = 2013, - journal = {Environmental Microbiology}, - publisher = {Wiley}, - volume = 15, - pages = {2557–2572}, - url = {http://dx.doi.org/10.1111/1462-2920.12151}, - issn = {1462-2920}, - doi = {10.1111/1462-2920.12151}, - number = 9} - -@Article{jones2019insights, - title = {Insights into the importance of ecosystem services to human well-being in reservoir landscapes}, - author = {Jones, Sarah K. and Boundaogo, Mansour and DeClerck, Fabrice A. and Estrada-Carmona, Natalia and Mirumachi, Naho and Mulligan, Mark}, - year = 2019, - journal = {Ecosystem Services}, - publisher = {Elsevier BV}, - volume = 39, - pages = 100987, - url = {http://dx.doi.org/10.1016/j.ecoser.2019.100987}, - issn = {2212-0416}, - doi = {10.1016/j.ecoser.2019.100987} -} - -@Article{kim2021effect, - title = {Effect of Rainfall and pH on Musty Odor Produced in the Sanbe Reservoir}, - author = {Kim, Sangyeob and Hayashi, Shohei and Masuki, Shingo and Ayukawa, Kazuhiro and Ohtani, Shuji and Seike, Yasushi}, - year = 2021, - journal = {Water}, - publisher = {MDPI AG}, - volume = 13, - pages = 3600, - url = {http://dx.doi.org/10.3390/w13243600}, - issn = {2073-4441}, - doi = {10.3390/w13243600}, - number = 24} - -@Article{kitazaki2013characterization, - title = {Characterization of Lysis of the Multicellular CyanobacteriumLimnothrix/Pseudanabaenasp. Strain ABRG5-3}, - author = {KITAZAKI, Chifumi and NUMANO, Setsuko and TAKANEZAWA, Akira and NISHIZAWA, Tomoyasu and SHIRAI, Makoto and ASAYAMA, Munehiko}, - year = 2013, - journal = {Bioscience, Biotechnology, and Biochemistry}, - publisher = {Informa UK Limited}, - volume = 77, - pages = {2339–2347}, - url = {http://dx.doi.org/10.1271/bbb.130409}, - issn = {1347-6947}, - doi = {10.1271/bbb.130409}, - number = 12} - -@Article{lai2020eukaryotic, - title = {Eukaryotic microbial distribution pattern and its potential effects on fisheries in the fish reserves of Qiantang River in breeding season}, - author = {Lai, Hang and Zhao, Li and Yang, Wen and Nicholaus, Regan and Lukwambe, Betina and Zhu, Jinyong and Zheng, Zhongming}, - year = 2020, - journal = {Journal of Oceanology and Limnology}, - publisher = {Springer Science and Business Media LLC}, - volume = 39, - pages = {566–581}, - url = {http://dx.doi.org/10.1007/s00343-020-9331-2}, - issn = {2523-3521}, - doi = {10.1007/s00343-020-9331-2}, - number = 2} - -@Article{lai2022generalizing, - title = {Generalizing hierarchical and variation partitioning in multiple regression and canonical analyses using the rdacca.hp R package}, - author = {Lai, Jiangshan and Zou, Yi and Zhang, Jinlong and Peres‐Neto, Pedro R.}, - year = 2022, - journal = {Methods in Ecology and Evolution}, - publisher = {Wiley}, - volume = 13, - pages = {782–788}, - url = {http://dx.doi.org/10.1111/2041-210X.13800}, - issn = {2041-210X}, - doi = {10.1111/2041-210x.13800}, - number = 4} - -@Article{langenheder2007the, - title = {THE ROLE OF ENVIRONMENTAL AND SPATIAL FACTORS FOR THE COMPOSITION OF AQUATIC BACTERIAL COMMUNITIES}, - author = {Langenheder, Silke and Ragnarsson, Henrik}, - year = 2007, - journal = {Ecology}, - publisher = {Wiley}, - volume = 88, - pages = {2154–2161}, - url = {http://dx.doi.org/10.1890/06-2098.1}, - issn = {0012-9658}, - doi = {10.1890/06-2098.1}, - number = 9} - -@Article{lee2021occurrence, - title = {Occurrence and phylogenetic analysis of {{\textit{Pseudanabaena}}} sp. producing 2‐methylisoborneol in drinking water source of South Korea}, - author = {Lee, Jung Eun and Yu, Mi Na and Yu, Soonju and Byeon, Myeongseop}, - year = 2021, - journal = {Environmental Microbiology Reports}, - publisher = {Wiley}, - volume = 14, - pages = {197–202}, - url = {http://dx.doi.org/10.1111/1758-2229.13031}, - issn = {1758-2229}, - doi = {10.1111/1758-2229.13031}, - number = 2} - -@Article{legendre2014interpreting, - title = {Interpreting the replacement and richness difference components of beta diversity}, - author = {Legendre, Pierre}, - year = 2014, - journal = {Global Ecology and Biogeography}, - publisher = {Wiley}, - volume = 23, - pages = {1324–1334}, - url = {http://dx.doi.org/10.1111/geb.12207}, - issn = {1466-8238}, - doi = {10.1111/geb.12207}, - number = 11} - -@Article{leibold2004the, - title = {The metacommunity concept: a framework for multi‐scale community ecology}, - author = {Leibold, M. A. and Holyoak, M. and Mouquet, N. and Amarasekare, P. and Chase, J. M. and Hoopes, M. F. and Holt, R. D. and Shurin, J. B. and Law, R. and Tilman, D. and Loreau, M. and Gonzalez, A.}, - year = 2004, - journal = {Ecology Letters}, - publisher = {Wiley}, - volume = 7, - pages = {601–613}, - url = {http://dx.doi.org/10.1111/j.1461-0248.2004.00608.x}, - issn = {1461-0248}, - doi = {10.1111/j.1461-0248.2004.00608.x}, - number = 7} - -@Article{leprieur2011partitioning, - title = {Partitioning global patterns of freshwater fish beta diversity reveals contrasting signatures of past climate changes: Partitioning global patterns of fish beta diversity}, - author = {Leprieur, Fabien and Tedesco, Pablo A. and Hugueny, Bernard and Beauchard, Olivier and Dürr, Hans H. and Brosse, Sébastien and Oberdorff, Thierry}, - year = 2011, - journal = {Ecology Letters}, - publisher = {Wiley}, - volume = 14, - pages = {325–334}, - url = {http://dx.doi.org/10.1111/j.1461-0248.2011.01589.x}, - issn = {1461-023X}, - doi = {10.1111/j.1461-0248.2011.01589.x}, - number = 4} - -@Article{tian2014dynamics, - title = {Dynamics of phytoplankton communities in the Jiangdong Reservoir of Jiulong River, Fujian, South China}, - author = {Tian, Yongqiang and Huang, Bangqin and Yu, Chaochao and Chen, Nengwang and Hong, Huasheng}, - year = 2014, - journal = {Chinese Journal of Oceanology and Limnology}, - publisher = {Springer Science and Business Media LLC}, - volume = 32, - pages = {255–265}, - url = {http://dx.doi.org/10.1007/s00343-014-3158-7}, - issn = {1993-5005}, - doi = {10.1007/s00343-014-3158-7}, - number = 2} - -@InBook{timbers2022r, - title = {R and the Tidyverse}, - author = {Timbers, Tiffany and Campbell, Trevor and Lee, Melissa}, - year = 2022, - booktitle = {Data Science}, - publisher = {Chapman and Hall/CRC}, - pages = {1–26}, - url = {http://dx.doi.org/10.1201/9781003080978-1}, - doi = {10.1201/9781003080978-1} -} - -@Article{li2019distinct, - title = {Distinct Successions of Common and Rare Bacteria in Soil Under Humic Acid Amendment – A Microcosm Study}, - author = {Li, Pengfa and Liu, Jia and Jiang, Chunyu and Wu, Meng and Liu, Ming and Li, Zhongpei}, - year = 2019, - journal = {Frontiers in Microbiology}, - publisher = {Frontiers Media SA}, - volume = 10, - url = {http://dx.doi.org/10.3389/fmicb.2019.02271}, - issn = {1664-302X}, - doi = {10.3389/fmicb.2019.02271} -} - -@Article{li2017responses, - title = {Responses of spatial-temporal dynamics of bacterioplankton community to large-scale reservoir operation: a case study in the Three Gorges Reservoir, China}, - author = {Li, Zhe and Lu, Lunhui and Guo, Jinsong and Yang, Jixiang and Zhang, Jiachao and He, Bin and Xu, Linlin}, - year = 2017, - journal = {Scientific Reports}, - publisher = {Springer Science and Business Media LLC}, - volume = 7, - url = {http://dx.doi.org/10.1038/srep42469}, - issn = {2045-2322}, - doi = {10.1038/srep42469}, - number = 1} - -@Article{wang2017shift, - title = {Shift in bacterioplankton diversity and structure: Influence of anthropogenic disturbances along the Yarlung Tsangpo River on the Tibetan Plateau, China}, - author = {Wang, Peifang and Wang, Xun and Wang, Chao and Miao, Lingzhan and Hou, Jun and Yuan, Qiusheng}, - year = 2017, - journal = {Scientific Reports}, - publisher = {Springer Science and Business Media LLC}, - volume = 7, - url = {http://dx.doi.org/10.1038/s41598-017-12893-4}, - issn = {2045-2322}, - doi = {10.1038/s41598-017-12893-4}, - number = 1} - -@Article{lindell1995ultraphytoplankton, - title = {Ultraphytoplankton succession is triggered by deep winter mixing in the Gulf of Aqaba (Eilat), Red Sea}, - author = {Lindell, Debbie and Post, Anton F.}, - year = 1995, - journal = {Limnology and Oceanography}, - publisher = {Wiley}, - volume = 40, - pages = {1130–1141}, - url = {http://dx.doi.org/10.4319/lo.1995.40.6.1130}, - issn = {1939-5590}, - doi = {10.4319/lo.1995.40.6.1130}, - number = 6} - -@Article{liu2020phytoplankton, - title = {Phytoplankton community characteristics in rice paddy fields under different nitrogen fertiliser applications}, - author = {Liu, Yaqin and Zou, Guoyan and Yuan, Quan and Huang, Weiwei and Zhou, Wenzong}, - year = 2020, - journal = {Acta Physiologiae Plantarum}, - publisher = {Springer Science and Business Media LLC}, - volume = 42, - url = {http://dx.doi.org/10.1007/s11738-020-3025-4}, - issn = {1861-1664}, - doi = {10.1007/s11738-020-3025-4}, - number = 3} - -@Article{yang2020compositional, - title = {Compositional variations and the environmental responses of bacterioplankton in the Pengxi River of the Three Gorges Reservoir, China}, - author = {Yang, Qing and Wan, Chengyan and Zou, Xi and Shi, Fang and Zheng, Zhiwei and Hu, Lian}, - year = 2020, - journal = {Journal of Freshwater Ecology}, - publisher = {Informa UK Limited}, - volume = 35, - pages = {449–467}, - url = {http://dx.doi.org/10.1080/02705060.2020.1852123}, - issn = {2156-6941}, - doi = {10.1080/02705060.2020.1852123}, - number = 1} - -@Article{ma2018quantitative, - title = {Quantitative radiomic biomarkers for discrimination between neuromyelitis optica spectrum disorder and multiple sclerosis}, - author = {Ma, Xiaoxiao and Zhang, Liwen and Huang, Dehui and Lyu, Jinhao and Fang, Mengjie and Hu, Jianxing and Zang, Yali and Zhang, Dekang and Shao, Hang and Ma, Lin and Tian, Jie and Dong, Di and Lou, Xin}, - year = 2018, - journal = {Journal of Magnetic Resonance Imaging}, - publisher = {Wiley}, - volume = 49, - pages = {1113–1121}, - url = {http://dx.doi.org/10.1002/jmri.26287}, - issn = {1522-2586}, - doi = {10.1002/jmri.26287}, - number = 4} - -@Article{moustakagouni2006phytoplankton, - title = {Phytoplankton species succession in a shallow Mediterranean lake (L. Kastoria, Greece): steady-state dominance of Limnothrix redekei, Microcystis aeruginosa and Cylindrospermopsis raciborskii}, - author = {Moustaka-Gouni, Maria and Vardaka, Elisabeth and Tryfon, Eleni}, - year = 2006, - journal = {Hydrobiologia}, - publisher = {Springer Science and Business Media LLC}, - volume = 575, - pages = {129–140}, - url = {http://dx.doi.org/10.1007/s10750-006-0360-4}, - issn = {1573-5117}, - doi = {10.1007/s10750-006-0360-4}, - number = 1} -@Article{moustakagouni2006phytoplankton, - title = {Phytoplankton species succession in a shallow Mediterranean lake (L. Kastoria, Greece): steady-state dominance of Limnothrix redekei, Microcystis aeruginosa and Cylindrospermopsis raciborskii}, - author = {Moustaka-Gouni, Maria and Vardaka, Elisabeth and Tryfon, Eleni}, - year = 2006, - journal = {Hydrobiologia}, - publisher = {Springer Science and Business Media LLC}, - volume = 575, - pages = {129–140}, - url = {http://dx.doi.org/10.1007/s10750-006-0360-4}, - issn = {1573-5117}, - doi = {10.1007/s10750-006-0360-4}, - number = 1} - - -@Article{zhang2019biological, - title = {Biological regulation of pH during intensive growth of phytoplankton in two eutrophic estuarine waters}, - author = {Zhang, Y and Gao, Y and Kirchman, DL and Cottrell, MT and Chen, R and Wang, K and Ouyang, Z and Xu, YY and Chen, B and Yin, K and Cai, WJ}, - year = 2019, - journal = {Marine Ecology Progress Series}, - publisher = {Inter-Research Science Center}, - volume = 609, - pages = {87–99}, - url = {http://dx.doi.org/10.3354/meps12836}, - issn = {1616-1599}, - doi = {10.3354/meps12836} -} - -@Article{onandia2021key, - title = {Key drivers structuring rotifer communities in ponds: insights into an agricultural landscape}, - author = {Onandia, Gabriela and Maassen, Sebastian and Musseau, Camille L and Berger, Stella A and Olmo, Carla and Jeschke, Jonathan M and Lischeid, Gunnar}, - year = 2021, - journal = {Journal of Plankton Research}, - publisher = {Oxford University Press (OUP)}, - volume = 43, - pages = {396–412}, - url = {http://dx.doi.org/10.1093/plankt/fbab033}, - issn = {1464-3774}, - doi = {10.1093/plankt/fbab033}, - number = 3, - editor = {Beisner, Beatrix E} -} - -@Article{papadimitriou2021differential, - title = {Differential Effect of Hydroxen Peroxide οn Toxic Cyanobacteria of Hypertrophic Mediterranean Waterbodies}, - author = {Papadimitriou, Theodoti and Katsiapi, Matina and Stefanidou, Natassa and Paxinou, Aikaterini and Poulimenakou, Vasiliki and Laspidou, Chrysi S. and Moustaka-Gouni, Maria and Kormas, Konstantinos A.}, - year = 2021, - journal = {Sustainability}, - publisher = {MDPI AG}, - volume = 14, - pages = 123, - url = {http://dx.doi.org/10.3390/su14010123}, - issn = {2071-1050}, - doi = {10.3390/su14010123}, - number = 1} - -@Article{zhou2018effects, - title = {Effects of increasing nutrient disturbances on phytoplankton community structure and biodiversity in two tropical seas}, - author = {Zhou, Yuping and Hu, Bo and Zhao, Weihong and Cui, Dongyang and Tan, Liju and Wang, Jiangtao}, - year = 2018, - journal = {Marine Pollution Bulletin}, - publisher = {Elsevier BV}, - volume = 135, - pages = {239–248}, - url = {http://dx.doi.org/10.1016/j.marpolbul.2018.07.033}, - issn = {0025-326X}, - doi = {10.1016/j.marpolbul.2018.07.033} -} - -@Article{pernthaler2017competition, - title = {Competition and niche separation of pelagic bacteria in freshwater habitats}, - author = {Pernthaler, Jakob}, - year = 2017, - journal = {Environmental Microbiology}, - publisher = {Wiley}, - volume = 19, - pages = {2133–2150}, - url = {http://dx.doi.org/10.1111/1462-2920.13742}, - issn = {1462-2920}, - doi = {10.1111/1462-2920.13742}, - number = 6} - -@Article{mota2010use, - title = {Use of the Multi-Response Permutation Procedure and Indicator Species Value for the Statistical Classification of the Gypsicolous Iberian Scrub Communities}, - author = {Mota, Juan F. and Garrido-Becerra, Juan A. and Pérez-García, Francisco J. and Sola, Ana J. and Valle, Francisco}, - year = 2010, - journal = {Candollea}, - publisher = {Society of Conservatoire at Jardin Botaniques de la Ville de Geneve}, - volume = 65, - pages = {117–134}, - url = {http://dx.doi.org/10.15553/c2010v651a13}, - issn = {0373-2967}, - doi = {10.15553/c2010v651a13}, - number = 1} - -@Article{preussel2009response, - title = {Response of cylindrospermopsin production and release in Aphanizomenon flos-aquae (Cyanobacteria) to varying light and temperature conditions}, - author = {Preußel, Karina and Wessel, Gabriele and Fastner, Jutta and Chorus, Ingrid}, - year = 2009, - journal = {Harmful Algae}, - publisher = {Elsevier BV}, - volume = 8, - pages = {645–650}, - url = {http://dx.doi.org/10.1016/j.hal.2008.10.009}, - issn = {1568-9883}, - doi = {10.1016/j.hal.2008.10.009}, - number = 5} - -@Article{reche2005does, - title = {DOES ECOSYSTEM SIZE DETERMINE AQUATIC BACTERIAL RICHNESS?}, - author = {Reche, Isabel and Pulido-Villena, Elvira and Morales-Baquero, Rafael and Casamayor, Emilio O.}, - year = 2005, - journal = {Ecology}, - publisher = {Wiley}, - volume = 86, - pages = {1715–1722}, - url = {http://dx.doi.org/10.1890/04-1587}, - issn = {0012-9658}, - doi = {10.1890/04-1587}, - number = 7} - -@Article{regueiraiglesias2022insilico, - title = {In-Silico Detection of Oral Prokaryotic Species With Highly Similar 16S rRNA Sequence Segments Using Different Primer Pairs}, - author = {Regueira-Iglesias, Alba and Vázquez-González, Lara and Balsa-Castro, Carlos and Blanco-Pintos, Triana and Martín-Biedma, Benjamín and Arce, Víctor M. and Carreira, Maria J. and Tomás, Inmaculada}, - year = 2022, - journal = {Frontiers in Cellular and Infection Microbiology}, - publisher = {Frontiers Media SA}, - volume = 11, - url = {http://dx.doi.org/10.3389/fcimb.2021.770668}, - issn = {2235-2988}, - doi = {10.3389/fcimb.2021.770668} -} - -@Article{ren2015ph, - title = {pH Influences the Importance of Niche-Related and Neutral Processes in Lacustrine Bacterioplankton Assembly}, - author = {Ren, Lijuan and Jeppesen, Erik and He, Dan and Wang, Jianjun and Liboriussen, Lone and Xing, Peng and Wu, Qinglong L.}, - year = 2015, - journal = {Applied and Environmental Microbiology}, - publisher = {American Society for Microbiology}, - volume = 81, - pages = {3104–3114}, - url = {http://dx.doi.org/10.1128/aem.04042-14}, - issn = {1098-5336}, - doi = {10.1128/aem.04042-14}, - number = 9, - editor = {Wommack, K. E.} -} - -@Article{roguet2015neutral, - title = {Neutral community model explains the bacterial community assembly in freshwater lakes}, - author = {Roguet, Adélaïde and Laigle, Grégory S. and Therial, Claire and Bressy, Adèle and Soulignac, Frédéric and Catherine, Arnaud and Lacroix, Gérard and Jardillier, Ludwig and Bonhomme, Céline and Lerch, Thomas Z. and Lucas, Françoise S.}, - year = 2015, - journal = {FEMS Microbiology Ecology}, - publisher = {Oxford University Press (OUP)}, - volume = 91, - pages = {fiv125}, - url = {http://dx.doi.org/10.1093/femsec/fiv125}, - issn = {1574-6941}, - doi = {10.1093/femsec/fiv125}, - number = 11, - editor = {Lueders, Tillmann} -} - -@Article{sauzsanchez2022spatialtemporal, - title = {Spatial-temporal Variations of Discarded Ichthyofauna from a Small-scale Shrimp Fishery: Influence of Ecological Patterns in a Yucatan Coastal Lagoon}, - author = {Sauz-Sánchez, Jonathan J. and López-Rocha, Jorge A. and Arceo-Carranza, Daniel and Poot-López, Gaspar R.}, - year = 2022, - journal = {Journal of Coastal Research}, - publisher = {Coastal Education and Research Foundation}, - volume = 38, - url = {http://dx.doi.org/10.2112/JCOASTRES-D-21-00077.1}, - issn = {0749-0208}, - doi = {10.2112/jcoastres-d-21-00077.1}, - number = 4} - -@Article{schloss2015sequencing, - title = {Sequencing 16S rRNA gene fragments using the PacBio SMRT DNA sequencing system}, - author = {Schloss, Patrick D and Westcott, Sarah L and Jenior, Matthew L and Highlander, Sarah K}, - year = 2015, - publisher = {PeerJ}, - url = {http://dx.doi.org/10.7287/peerj.preprints.778v1}, - doi = {10.7287/peerj.preprints.778v1} -} - -@Article{shade2010differential, - title = {Differential bacterial dynamics promote emergent community robustness to lake mixing: an epilimnion to hypolimnion transplant experiment}, - author = {Shade, A. and Chiu, C.‐Y. and McMahon, K. D.}, - year = 2010, - journal = {Environmental Microbiology}, - publisher = {Wiley}, - volume = 12, - pages = {455–466}, - url = {http://dx.doi.org/10.1111/j.1462-2920.2009.02087.x}, - issn = {1462-2920}, - doi = {10.1111/j.1462-2920.2009.02087.x}, - number = 2} - -@Article{shao2020bacterioplankton, - title = {Bacterioplankton assembly and interspecies interactions follow trajectories of Gymnodinium−diatom bloom}, - author = {Shao, Qianwen and Lin, Zhongzhou and Zhou, Chengxu and Yan, Xiaojun}, - year = 2020, - journal = {Marine Environmental Research}, - publisher = {Elsevier BV}, - volume = 160, - pages = 105010, - url = {http://dx.doi.org/10.1016/j.marenvres.2020.105010}, - issn = {0141-1136}, - doi = {10.1016/j.marenvres.2020.105010} -} - -@Article{shapiro1990current, - title = {Current beliefs regarding dominance by blue-greens: The case for the importance of CO2and pH}, - author = {Shapiro, Joseph}, - year = 1990, - journal = {SIL Proceedings, 1922-2010}, - publisher = {Informa UK Limited}, - volume = 24, - pages = {38–54}, - url = {http://dx.doi.org/10.1080/03680770.1989.11898689}, - issn = {0368-0770}, - doi = {10.1080/03680770.1989.11898689}, - number = 1} - -@Article{sharpley2013phosphorus, - title = {Phosphorus Legacy: Overcoming the Effects of Past Management Practices to Mitigate Future Water Quality Impairment}, - author = {Sharpley, Andrew and Jarvie, Helen P. and Buda, Anthony and May, Linda and Spears, Bryan and Kleinman, Peter}, - year = 2013, - journal = {Journal of Environmental Quality}, - publisher = {Wiley}, - volume = 42, - pages = {1308–1326}, - url = {http://dx.doi.org/10.2134/jeq2013.03.0098}, - issn = {0047-2425}, - doi = {10.2134/jeq2013.03.0098}, - number = 5} - -@Article{shen2020contrasting, - title = {Contrasting patterns and drivers of soil bacterial and fungal diversity across a mountain gradient}, - author = {Shen, Congcong and Gunina, Anna and Luo, Yu and Wang, Jianjun and He, Ji‐Zheng and Kuzyakov, Yakov and Hemp, Andreas and Classen, Aimée T. and Ge, Yuan}, - year = 2020, - journal = {Environmental Microbiology}, - publisher = {Wiley}, - volume = 22, - pages = {3287–3301}, - url = {http://dx.doi.org/10.1111/1462-2920.15090}, - issn = {1462-2920}, - doi = {10.1111/1462-2920.15090}, - number = 8} - -@Article{simon2015marked, - title = {Marked seasonality and high spatial variability of protist communities in shallow freshwater systems}, - author = {Simon, Marianne and López-García, Purificación and Deschamps, Philippe and Moreira, David and Restoux, Gwendal and Bertolino, Paola and Jardillier, Ludwig}, - year = 2015, - journal = {The ISME Journal}, - publisher = {Springer Science and Business Media LLC}, - volume = 9, - pages = {1941–1953}, - url = {http://dx.doi.org/10.1038/ismej.2015.6}, - issn = {1751-7370}, - doi = {10.1038/ismej.2015.6}, - number = 9} - -@Article{sloan2006quantifying, - title = {Quantifying the roles of immigration and chance in shaping prokaryote community structure}, - author = {Sloan, William T. and Lunn, Mary and Woodcock, Stephen and Head, Ian M. and Nee, Sean and Curtis, Thomas P.}, - year = 2006, - journal = {Environmental Microbiology}, - publisher = {Wiley}, - volume = 8, - pages = {732–740}, - url = {http://dx.doi.org/10.1111/j.1462-2920.2005.00956.x}, - issn = {1462-2920}, - doi = {10.1111/j.1462-2920.2005.00956.x}, - number = 4} - -@Article{souffreau2014an, - title = {An experimental analysis of species sorting and mass effects in freshwater bacterioplankton}, - author = {Souffreau, Caroline and Pecceu, Bert and Denis, Carla and Rummens, Koen and De Meester, Luc}, - year = 2014, - journal = {Freshwater Biology}, - publisher = {Wiley}, - volume = 59, - pages = {2081–2095}, - url = {http://dx.doi.org/10.1111/fwb.12408}, - issn = {1365-2427}, - doi = {10.1111/fwb.12408}, - number = 10} - -@Article{stone1990the, - title = {The checkerboard score and species distributions}, - author = {Stone, Lewi and Roberts, Alan}, - year = 1990, - journal = {Oecologia}, - publisher = {Springer Science and Business Media LLC}, - volume = 85, - pages = {74–79}, - url = {http://dx.doi.org/10.1007/bf00317345}, - issn = {1432-1939}, - doi = {10.1007/bf00317345}, - number = 1} - -@Article{haq2021effect, - title = {Effect of Chicken Manure-Based Fertiliser on Bacterial Communities and Diversity of Tomato Endosphere Microbiota}, - author = {Haq, Hafeez Ul and Li, Ye and Jin, Lingyue and Zhang, Ting and Cheng, Linjie and Li, Zhe and Tian, Baoyu}, - year = 2021, - journal = {Agriculture (Pol’nohospodárstvo)}, - publisher = {Walter de Gruyter GmbH}, - volume = 67, - pages = {144–154}, - url = {http://dx.doi.org/10.2478/agri-2021-0013}, - issn = {1338-4376}, - doi = {10.2478/agri-2021-0013}, - number = 3} - -@Article{wang2022ampliconbased, - title = {Amplicon-based sequencing and co-occurence network analysis reveals notable differences of microbial community structure in healthy and dandruff scalps}, - author = {Wang, Li and Yu, Tao and Zhu, Yaxin and Luo, Yingfeng and Dong, Fan and Lin, Xuemei and Zhao, Wenzhong and He, Zilong and Hu, Songnian and Dong, Zhiyang}, - year = 2022, - journal = {BMC Genomics}, - publisher = {Springer Science and Business Media LLC}, - volume = 23, - url = {http://dx.doi.org/10.1186/s12864-022-08534-4}, - issn = {1471-2164}, - doi = {10.1186/s12864-022-08534-4}, - number = 1} - -@Article{wu2021spatial, - title = {Spatial and Seasonal Distribution of 2-Methylisoborneol in a Large Eutrophic Shallow Lake, China}, - author = {Wu, Anjie and Wang, Yadong and Friese, Kurt and Zhang, Lu and Han, Chao and Kang, Dejun and Shen, Qiushi}, - year = 2021, - journal = {Water, Air, \& Soil Pollution}, - publisher = {Springer Science and Business Media LLC}, - volume = 232, - url = {http://dx.doi.org/10.1007/s11270-021-05340-8}, - issn = {1573-2932}, - doi = {10.1007/s11270-021-05340-8}, - number = 9} - -@Article{wu2017abundant, - title = {Abundant and rare picoeukaryotic sub‐communities present contrasting patterns in the epipelagic waters of marginal seas in the northwestern Pacific Ocean}, - author = {Wu, Wenxue and Logares, Ramiro and Huang, Bangqin and Hsieh, Chih‐hao}, - year = 2017, - journal = {Environmental Microbiology}, - publisher = {Wiley}, - volume = 19, - pages = {287–300}, - url = {http://dx.doi.org/10.1111/1462-2920.13606}, - issn = {1462-2920}, - doi = {10.1111/1462-2920.13606}, - number = 1} - -@Article{xue2018distinct, - title = {Distinct patterns and processes of abundant and rare eukaryotic plankton communities following a reservoir cyanobacterial bloom}, - author = {Xue, Yuanyuan and Chen, Huihuang and Yang, Jun R. and Liu, Min and Huang, Bangqin and Yang, Jun}, - year = 2018, - journal = {The ISME Journal}, - publisher = {Springer Science and Business Media LLC}, - volume = 12, - pages = {2263–2277}, - url = {http://dx.doi.org/10.1038/s41396-018-0159-0}, - issn = {1751-7370}, - doi = {10.1038/s41396-018-0159-0}, - number = 9} - -@Article{yan2008plankton, - title = {Plankton community composition in the Three Gorges Reservoir Region revealed by PCR-DGGE and its relationships with environmental factors}, - author = {YAN, Qingyun and YU, Yuhe and FENG, Weisong and YU, Zhigang and CHEN, Hongtao}, - year = 2008, - journal = {Journal of Environmental Sciences}, - publisher = {Elsevier BV}, - volume = 20, - pages = {732–738}, - url = {http://dx.doi.org/10.1016/s1001-0742(08)62120-8}, - issn = {1001-0742}, - doi = {10.1016/s1001-0742(08)62120-8}, - number = 6} - -@Article{yang2018spatial, - title = {Spatial heterogeneity of spring phytoplankton in a large tropical reservoir: could mass effect homogenize the heterogeneity by species sorting?}, - author = {Yang, Yang and Niu, Haiyu and Xiao, Lijuan and Lin, Qiuqi and Han, Bo-Ping and Naselli-Flores, Luigi}, - year = 2018, - journal = {Hydrobiologia}, - publisher = {Springer Science and Business Media LLC}, - volume = 819, - pages = {109–122}, - url = {http://dx.doi.org/10.1007/s10750-018-3651-7}, - issn = {1573-5117}, - doi = {10.1007/s10750-018-3651-7}, - number = 1} - -@Article{yoshiyama2008optimal, - title = {Optimal Cell Size for Resource Uptake in Fluids: A New Facet of Resource Competition}, - author = {Yoshiyama, Kohei and Klausmeier, Christopher A.}, - year = 2008, - journal = {The American Naturalist}, - publisher = {University of Chicago Press}, - volume = 171, - pages = {59–70}, - url = {http://dx.doi.org/10.1086/523950}, - issn = {1537-5323}, - doi = {10.1086/523950}, - number = 1} - -@Article{zander2016effects, - title = {Effects of temperature variability on community structure in a natural microbial food web}, - author = {Zander, Axel and Bersier, Louis‐Félix and Gray, Sarah M.}, - year = 2016, - journal = {Global Change Biology}, - publisher = {Wiley}, - volume = 23, - pages = {56–67}, - url = {http://dx.doi.org/10.1111/gcb.13374}, - issn = {1365-2486}, - doi = {10.1111/gcb.13374}, - number = 1} - -@Article{zhang2018cooccurrence, - title = {Co-occurrence patterns of soybean rhizosphere microbiome at a continental scale}, - author = {Zhang, Baogang and Zhang, Jun and Liu, Yao and Shi, Peng and Wei, Gehong}, - year = 2018, - journal = {Soil Biology and Biochemistry}, - publisher = {Elsevier BV}, - volume = 118, - pages = {178–186}, - url = {http://dx.doi.org/10.1016/j.soilbio.2017.12.011}, - issn = {0038-0717}, - doi = {10.1016/j.soilbio.2017.12.011} -} - -@Article{zhang2021eutrophication, - title = {Eutrophication increases deterministic processes and heterogeneity of co-occurrence networks of bacterioplankton metacommunity assembly at a regional scale in tropical coastal reservoirs}, - author = {Zhang, Jiexiang and Chen, Ye and Huo, Yong and Guo, Jia and Wan, Linglin and Lu, Zhe and Wu, Qinglong L. and Jeppesen, Erik and Han, Bo-Ping and Ren, Lijuan}, - year = 2021, - journal = {Water Research}, - publisher = {Elsevier BV}, - volume = 202, - pages = 117460, - url = {http://dx.doi.org/10.1016/j.watres.2021.117460}, - issn = {0043-1354}, - doi = {10.1016/j.watres.2021.117460} -} - -@Article{zhang2021untangling, - title = {Untangling Microbiota Diversity and Assembly Patterns in the World’s Largest Water Diversion Canal}, - author = {Zhang, Lu and Yin, Wei and Wang, Chao and Zhang, Aijing and Zhang, Hong and Zhang, Tong and Ju, Feng}, - year = 2021, - journal = {Water Research}, - publisher = {Elsevier BV}, - volume = 204, - pages = 117617, - url = {http://dx.doi.org/10.1016/j.watres.2021.117617}, - issn = {0043-1354}, - doi = {10.1016/j.watres.2021.117617} -} - -@Article{zhang2022similar, - title = {Similar geographic patterns but distinct assembly processes of abundant and rare bacterioplankton communities in river networks of the Taihu Basin}, - author = {Zhang, Tao and Xu, Sai and Yan, Ruomeng and Wang, Ruyue and Gao, Yuexiang and Kong, Ming and Yi, Qitao and Zhang, Yimin}, - year = 2022, - journal = {Water Research}, - publisher = {Elsevier BV}, - volume = 211, - pages = 118057, - url = {http://dx.doi.org/10.1016/j.watres.2022.118057}, - issn = {0043-1354}, - doi = {10.1016/j.watres.2022.118057} -} - -@Article{zhao2022independent, - title = {Independent and combined effects of antibiotic stress and EM microbial agent on the nitrogen and humus transformation and bacterial community successions during the chicken manure composting}, - author = {Zhao, Huaxuan and Li, Shangmin and Jiang, Yixiu and Wang, Danpin and Wang, Hongzhi and Dou, Xinhong}, - year = 2022, - journal = {Bioresource Technology}, - publisher = {Elsevier BV}, - volume = 354, - pages = 127237, - url = {http://dx.doi.org/10.1016/j.biortech.2022.127237}, - issn = {0960-8524}, - doi = {10.1016/j.biortech.2022.127237} -} - -@Article{zhao2018factors, - title = {Factors determining zooplankton assemblage difference among a man-made lake, connecting canals, and the water-origin river}, - author = {Zhao, Kun and Wang, Lizhu and Riseng, Catherine and Wehrly, Kevin and Pan, Yangdong and Song, Kun and Da, Liangjun and Pang, Wanting and You, Qingmin and Tian, Hua and Liu, Shuiqin and Wang, Quanxi}, - year = 2018, - journal = {Ecological Indicators}, - publisher = {Elsevier BV}, - volume = 84, - pages = {488–496}, - url = {http://dx.doi.org/10.1016/j.ecolind.2017.07.052}, - issn = {1470-160X}, - doi = {10.1016/j.ecolind.2017.07.052} -} - -@Article{zhou2017the, - title = {The sensitivity and stability of bacterioplankton community structure to wind-wave turbulence in a large, shallow, eutrophic lake}, - author = {Zhou, Jian and Qin, Boqiang and Han, Xiaoxia and Jin, Decai and Wang, Zhiping}, - year = 2017, - journal = {Scientific Reports}, - publisher = {Springer Science and Business Media LLC}, - volume = 7, - url = {http://dx.doi.org/10.1038/s41598-017-17242-z}, - issn = {2045-2322}, - doi = {10.1038/s41598-017-17242-z}, - number = 1} - -@Article{zhou2019field, - title = {Field Research on Mixing Aeration in a Drinking Water Reservoir: Performance and Microbial Community Structure}, - author = {Zhou, Zizhen and Huang, Tinlin and Gong, Weijin and Li, Yang and Liu, Yue and Zhou, Shilei}, - year = 2019, - journal = {International Journal of Environmental Research and Public Health}, - publisher = {MDPI AG}, - volume = 16, - pages = 4221, - url = {http://dx.doi.org/10.3390/ijerph16214221}, - issn = {1660-4601}, - doi = {10.3390/ijerph16214221}, - number = 21} - -@Article{logares2012biogeography, - title = {Biogeography of bacterial communities exposed to progressive long-term environmental change}, - author = {Logares, Ramiro and Lindström, Eva S and Langenheder, Silke and Logue, Jürg B and Paterson, Harriet and Laybourn-Parry, Johanna and Rengefors, Karin and Tranvik, Lars and Bertilsson, Stefan}, - year = 2012, - journal = {The ISME Journal}, - publisher = {Springer Science and Business Media LLC}, - volume = 7, - pages = {937–948}, - url = {http://dx.doi.org/10.1038/ismej.2012.168}, - issn = {1751-7370}, - doi = {10.1038/ismej.2012.168}, - number = 5} - -@Article{nemergut2013patterns, - title = {Patterns and Processes of Microbial Community Assembly}, - author = {Nemergut, Diana R. and Schmidt, Steven K. and Fukami, Tadashi and O’Neill, Sean P. and Bilinski, Teresa M. and Stanish, Lee F. and Knelman, Joseph E. and Darcy, John L. and Lynch, Ryan C. and Wickey, Phillip and Ferrenberg, Scott}, - year = 2013, - journal = {Microbiology and Molecular Biology Reviews}, - publisher = {American Society for Microbiology}, - volume = 77, - pages = {342–356}, - url = {http://dx.doi.org/10.1128/mmbr.00051-12}, - issn = {1098-5557}, - doi = {10.1128/mmbr.00051-12}, - number = 3} - -@InBook{holyoak2019metacommunities, - title = {Metacommunities}, - author = {Holyoak, Marcel}, - year = 2019, - booktitle = {Encyclopedia of Ecology}, - publisher = {Elsevier}, - pages = {146–152}, - url = {http://dx.doi.org/10.1016/B978-0-12-409548-9.11114-5}, - doi = {10.1016/b978-0-12-409548-9.11114-5} -} - -@Article{lin2017temperature, - title = {Temperature regulates deterministic processes and the succession of microbial interactions in anaerobic digestion process}, - author = {Lin, Qiang and De Vrieze, Jo and Li, Chaonan and Li, Jiaying and Li, Jiabao and Yao, Minjie and Hedenec, Petr and Li, Huan and Li, Tongtong and Rui, Junpeng and Frouz, Jan and Li, Xiangzhen}, - year = 2017, - journal = {Water Research}, - publisher = {Elsevier BV}, - volume = 123, - pages = {134–143}, - url = {http://dx.doi.org/10.1016/j.watres.2017.06.051}, - issn = {0043-1354}, - doi = {10.1016/j.watres.2017.06.051} -} - -@Article{pham2020first, - title = {First report of geosmin and 2-methylisoborneol (2-MIB) in {{\textit{Dolichospermum}}} and {{\textit{Oscillatoria}}} from Vietnam}, - author = {Pham, Thanh-Luu and Bui, Manh Ha and Driscoll, Mark and Shimizu, Kazuya and Motoo, Utsumi}, - year = 2020, - journal = {Limnology}, - publisher = {Springer Science and Business Media LLC}, - volume = 22, - pages = {43–56}, - url = {http://dx.doi.org/10.1007/s10201-020-00630-2}, - issn = {1439-863X}, - doi = {10.1007/s10201-020-00630-2}, - number = 1} - -@Article{lam2020superior, - title = {Superior resolution characterisation of microbial diversity in anaerobic digesters using full-length 16S rRNA gene amplicon sequencing}, - author = {Lam, Theo Y.C. and Mei, Ran and Wu, Zhuoying and Lee, Patrick K.H. and Liu, Wen-Tso and Lee, Po-Heng}, - year = 2020, - journal = {Water Research}, - publisher = {Elsevier BV}, - volume = 178, - pages = 115815, - url = {http://dx.doi.org/10.1016/j.watres.2020.115815}, - issn = {0043-1354}, - doi = {10.1016/j.watres.2020.115815} -} - -@Article{quast2012the, - title = {The SILVA ribosomal RNA gene database project: improved data processing and web-based tools}, - author = {Quast, Christian and Pruesse, Elmar and Yilmaz, Pelin and Gerken, Jan and Schweer, Timmy and Yarza, Pablo and Peplies, Jörg and Glöckner, Frank Oliver}, - year = 2012, - journal = {Nucleic Acids Research}, - publisher = {Oxford University Press (OUP)}, - volume = 41, - pages = {D590–D596}, - url = {http://dx.doi.org/10.1093/nar/gks1219}, - issn = {1362-4962}, - doi = {10.1093/nar/gks1219}, - number = {D1} -} - -@Article{ning2020a, - title = {A quantitative framework reveals ecological drivers of grassland microbial community assembly in response to warming}, - author = {Ning, Daliang and Yuan, Mengting and Wu, Linwei and Zhang, Ya and Guo, Xue and Zhou, Xishu and Yang, Yunfeng and Arkin, Adam P. and Firestone, Mary K. and Zhou, Jizhong}, - year = 2020, - journal = {Nature Communications}, - publisher = {Springer Science and Business Media LLC}, - volume = 11, - url = {http://dx.doi.org/10.1038/s41467-020-18560-z}, - issn = {2041-1723}, - doi = {10.1038/s41467-020-18560-z}, - number = 1} - -@article{ulhaq2021effect, - author = {Ulhaq, Hafeez and Li, Ye and Huiyu, Jin and Zhang, Ting and Cheng, Linjie and Li, Zhe and Tian, Baoyu}, - title = {Effect of Chicken Manure-Based Fertiliser on Bacterial Communities and Diversity of Tomato Endosphere Microbiota}, - journal = {Agriculture (Pol\'nohospodárstvo)}, - volume = {67}, - pages = {144-154}, - DOI = {https://doi.org/10.2478/agri-2021-0013}, - year = {2021}, - type = {Journal Article} -} - -@Article{zhang2021effects, - title = {Effects of ecological protection and restoration on phytoplankton diversity in impounded lakes along the eastern route of China’s South-to-North Water Diversion Project}, - author = {Zhang, Xiaojing and Wang, Guoqiang and Tan, Zhongxin and Wang, Yuntao and Li, Qing}, - year = 2021, - journal = {Science of The Total Environment}, - publisher = {Elsevier BV}, - volume = 795, - pages = 148870, - url = {http://dx.doi.org/10.1016/j.scitotenv.2021.148870}, - issn = {0048-9697}, - doi = {10.1016/j.scitotenv.2021.148870} -} - -@Article{ng2008hierarchical, - title = {Hierarchical zooplankton metacommunities: distinguishing between high and limiting dispersal mechanisms}, - author = {Ng, Ingrid S. Y. and Carr, Christina M. and Cottenie, Karl}, - year = 2008, - journal = {Hydrobiologia}, - publisher = {Springer Science and Business Media LLC}, - volume = 619, - pages = {133–143}, - url = {http://dx.doi.org/10.1007/s10750-008-9605-8}, - issn = {1573-5117}, - doi = {10.1007/s10750-008-9605-8}, - number = 1} - -@Article{lindstrom2006external, - title = {External control of bacterial community structure in lakes}, - author = {Lindström, Eva S. and Forslund, Markus and Algesten, Grete and Bergström, Ann-Kristin}, - year = 2006, - journal = {Limnology and Oceanography}, - publisher = {Wiley}, - volume = 51, - pages = {339–342}, - url = {http://dx.doi.org/10.4319/lo.2006.51.1.0339}, - issn = {0024-3590}, - doi = {10.4319/lo.2006.51.1.0339}, - number = 1} - -@Article{park2006nitratereducing, - title = {Nitrate-reducing bacterial community in a biofilm-electrode reactor}, - author = {Park, Ho Il and Kim, Ji Seong and Kim, Dong Kun and Choi, Yong-Jin and Pak, Daewon}, - year = 2006, - journal = {Enzyme and Microbial Technology}, - publisher = {Elsevier BV}, - volume = 39, - pages = {453–458}, - url = {http://dx.doi.org/10.1016/j.enzmictec.2005.11.028}, - issn = {0141-0229}, - doi = {10.1016/j.enzmictec.2005.11.028}, - number = 3} - -@article{curtis1997hydrologic, - author = {Curtis, P. J. and Schindler, D. W.}, - title = {Hydrologic control of dissolved organic matter in low-order Precambrian Shield Lakes}, - journal = {Biogeochemistry}, - volume = {36}, - number = {1}, - pages = {125-138}, - ISSN = {0168-2563}, - DOI = {https://doi.org/10.1023/a:1005787913638}, - year = {1997}, - type = {Journal Article} -} - - -@Article{orrock2010local, - title = {Local community size mediates ecological drift and competition in metacommunities}, - author = {Orrock, John L. and Watling, James I.}, - year = 2010, - journal = {Proceedings of the Royal Society B: Biological Sciences}, - publisher = {The Royal Society}, - volume = 277, - pages = {2185–2191}, - url = {http://dx.doi.org/10.1098/rspb.2009.2344}, - issn = {1471-2954}, - doi = {10.1098/rspb.2009.2344}, - number = 1691} - -@Article{beversdorf2018analysis, - title = {Analysis of cyanobacterial metabolites in surface and raw drinking waters reveals more than microcystin}, - author = {Beversdorf, Lucas J. and Rude, Kayla and Weirich, Chelsea A. and Bartlett, Sarah L. and Seaman, Mary and Kozik, Christine and Biese, Peter and Gosz, Timothy and Suha, Michael and Stempa, Christopher and Shaw, Christopher and Hedman, Curtis and Piatt, Joseph J. and Miller, Todd R.}, - year = 2018, - journal = {Water Research}, - publisher = {Elsevier BV}, - volume = 140, - pages = {280–290}, - url = {http://dx.doi.org/10.1016/j.watres.2018.04.032}, - issn = {0043-1354}, - doi = {10.1016/j.watres.2018.04.032} -} - -@Article{tong2019impacts, - title = {Impacts of water residence time on nitrogen budget of lakes and reservoirs}, - author = {Tong, Yindong and Li, Jiaqi and Qi, Miao and Zhang, Xiaoyan and Wang, Mengzhu and Liu, Xueyan and Zhang, Wei and Wang, Xuejun and Lu, Yiren and Lin, Yan}, - year = 2019, - journal = {Science of The Total Environment}, - publisher = {Elsevier BV}, - volume = 646, - pages = {75–83}, - url = {http://dx.doi.org/10.1016/j.scitotenv.2018.07.255}, - issn = {0048-9697}, - doi = {10.1016/j.scitotenv.2018.07.255} -} - -@Article{antoni2020response, - title = {Response of a natural Antarctic phytoplankton assemblage to changes in temperature and salinity}, - author = {Antoni, Julieta S. and Almandoz, Gastón O. and Ferrario, Martha E. and Hernando, Marcelo P. and Varela, Diana E. and Rozema, Patrick D. and Buma, Anita G.J. and Paparazzo, Flavio E. and Schloss, Irene R.}, - year = 2020, - journal = {Journal of Experimental Marine Biology and Ecology}, - publisher = {Elsevier BV}, - volume = 532, - pages = 151444, - url = {http://dx.doi.org/10.1016/j.jembe.2020.151444}, - issn = {0022-0981}, - doi = {10.1016/j.jembe.2020.151444} -} - -@Article{li2021phytoplankton, - title = {Phytoplankton community response to nutrients along lake salinity and altitude gradients on the Qinghai-Tibet Plateau}, - author = {Li, Zhaoxi and Gao, Yang and Wang, Shuoyue and Lu, Yao and Sun, Kun and Jia, Junjie and Wang, Yafeng}, - year = 2021, - journal = {Ecological Indicators}, - publisher = {Elsevier BV}, - volume = 128, - pages = 107848, - url = {http://dx.doi.org/10.1016/j.ecolind.2021.107848}, - issn = {1470-160X}, - doi = {10.1016/j.ecolind.2021.107848} -} - -@Article{liu2016nutrient, - title = {Nutrient removal from horticultural wastewater by benthic filamentous algae Klebsormidium sp., Stigeoclonium spp. and their communities: From laboratory flask to outdoor Algal Turf Scrubber (ATS)}, - author = {Liu, Junzhuo and Danneels, Bram and Vanormelingen, Pieter and Vyverman, Wim}, - year = 2016, - journal = {Water Research}, - publisher = {Elsevier BV}, - volume = 92, - pages = {61–68}, - url = {http://dx.doi.org/10.1016/j.watres.2016.01.049}, - issn = {0043-1354}, - doi = {10.1016/j.watres.2016.01.049} -} - -@Article{wang2021spatiotemporal, - title = {Spatiotemporal differences in phosphorus release potential of bloom-forming cyanobacteria in Lake Taihu}, - author = {Wang, Mengmeng and Zhang, Huifen and Du, Caili and Zhang, Wei and Shen, Jianing and Yang, Shunqing and Yang, Liuyan}, - year = 2021, - journal = {Environmental Pollution}, - publisher = {Elsevier BV}, - volume = 271, - pages = 116294, - url = {http://dx.doi.org/10.1016/j.envpol.2020.116294}, - issn = {0269-7491}, - doi = {10.1016/j.envpol.2020.116294} -} - -@Article{izaguirre1992a, - title = {A Copper-Tolerant Phormidium Species from Lake Mathews, California, That Produces 2-Methylisoborneol and Geosmin}, - author = {Izaguirre, G.}, - year = 1992, - journal = {Water Science and Technology}, - publisher = {IWA Publishing}, - volume = 25, - pages = {217–223}, - url = {http://dx.doi.org/10.2166/wst.1992.0055}, - issn = {1996-9732}, - doi = {10.2166/wst.1992.0055}, - number = 2} - -@Article{long2018multiyear, - title = {Multi-year succession of cyanobacteria blooms in a highland reservoir with changing nutrient status, Guizhou Province, China}, - author = {Long, Shengxing and Hamilton, Paul B. and Yang, Yang and Ma, Jianrong and Chobet, Ondhoro C. and Chen, Chuan and Dang, Anzhi and Liu, Zhiwei and Dong, Xian and Chen, Jiangan}, - year = 2018, - journal = {Journal of Limnology}, - publisher = {PAGEPress Publications}, - volume = 77, - url = {http://dx.doi.org/10.4081/jlimnol.2018.1636}, - issn = {1129-5767}, - doi = {10.4081/jlimnol.2018.1636}, - number = 2} - -@Article{nielsen2006sizedependent, - title = {Size-dependent growth rates in eukaryotic and prokaryotic algae exemplified by green algae and cyanobacteria: comparisons between unicells and colonial growth forms}, - author = {Nielsen, Søren Laurentius}, - year = 2006, - journal = {Journal of Plankton Research}, - publisher = {Oxford University Press (OUP)}, - volume = 28, - pages = {489–498}, - url = {http://dx.doi.org/10.1093/plankt/fbi134}, - issn = {0142-7873}, - doi = {10.1093/plankt/fbi134}, - number = 5} - -@Article{zheng2020effects, - title = {Effects of high light and temperature on Microcystis aeruginosa cell growth and β-cyclocitral emission}, - author = {Zheng, Tiefeng and Zhou, Min and Yang, Lin and Wang, Yan and Wang, Yaya and Meng, Yiyu and Liu, Jialu and Zuo, Zhaojiang}, - year = 2020, - journal = {Ecotoxicology and Environmental Safety}, - publisher = {Elsevier BV}, - volume = 192, - pages = 110313, - url = {http://dx.doi.org/10.1016/j.ecoenv.2020.110313}, - issn = {0147-6513}, - doi = {10.1016/j.ecoenv.2020.110313} -} - -@Article{wu2021metaanalysis, - title = {Meta-analysis of the response of marine phytoplankton to nutrient addition and seawater warming}, - author = {Wu, Xuerong and Liu, Haifei and Ru, Zhiming and Tu, Gangqin and Xing, Liming and Ding, Yu}, - year = 2021, - journal = {Marine Environmental Research}, - publisher = {Elsevier BV}, - volume = 168, - pages = 105294, - url = {http://dx.doi.org/10.1016/j.marenvres.2021.105294}, - issn = {0141-1136}, - doi = {10.1016/j.marenvres.2021.105294} -} - -@Article{yan2020environmental, - title = {Environmental selection shapes the formation of near-surface groundwater microbiomes}, - author = {Yan, Lijuan and Herrmann, Martina and Kampe, Bernd and Lehmann, Robert and Totsche, Kai Uwe and Küsel, Kirsten}, - year = 2020, - journal = {Water Research}, - publisher = {Elsevier BV}, - volume = 170, - pages = 115341, - url = {http://dx.doi.org/10.1016/j.watres.2019.115341}, - issn = {0043-1354}, - doi = {10.1016/j.watres.2019.115341} -} - -@Article{li2013photosynthetic, - title = {Photosynthetic carbon fixation by tropical coral reef phytoplankton assemblages: a UVR perspective}, - author = {Li, Gang and Che, Zhiwei and Gao, Kunshan}, - year = 2013, - journal = {ALGAE}, - publisher = {The Korean Society of Phycology}, - volume = 28, - pages = {281–288}, - url = {http://dx.doi.org/10.4490/algae.2013.28.3.281}, - issn = {1226-2617}, - doi = {10.4490/algae.2013.28.3.281}, - number = 3} - -@book{wei2005restoration, - author = {Wei, Z.}, - title = {Restoration of Taihu Lake from Eutrophic Status}, - publisher = {Yellow River Conservancy Press}, - address = {Zhengzhou}, - series = {Proceedings of the 2nd International Yellow River Forum on Keeping Healthy Life of the River, Vol V}, - pages = {8-13}, - ISBN = {978-7-80621-999-7}, - year = {2005}, - type = {Book} -} - -@article{rucker1997factors, - author = {Rucker, J. and Widener, C. and Zippel, P.}, - title = {Factors controlling the dominance of {{\textit{Planktothrix agardhii}}} and {{\textit{Limnothrix redekei}}} in eutrophic shallow lakes}, - journal = {Hydrobiologia}, - volume = {342}, - pages = {107-115}, - ISSN = {0018-8158}, - DOI = {https://doi.org/10.1023/a:1017013208039}, - year = {1997}, - type = {Journal Article} -} - -@article{nicklisch1989the, - author = {Nicklisch, Andreas}, - title = {The influence of light on primary production of two planktic blue-green algae}, - journal = {Archiv für Hydrobiologie, Beihefte Ergebnisse der Linnologie}, - volume = {33}, - pages = {451-455}, - year = {1989}, - type = {Journal Article} -} - -@article{moustakagouni2007phytoplankton, - author = {Moustaka-Gouni, M. and Vardaka, E. and Tryfon, E.}, - title = {Phytoplankton species succession in a shallow Mediterranean lake (L. Kastoria, Greece): steady-state dominance of Limnothrix redekei, Microcystis aeruginosa and Cylindrospermopsis raciborskii}, - journal = {Hydrobiologia}, - volume = {575}, - pages = {129-140}, - ISSN = {0018-8158}, - DOI = {https://doi.org/10.1007/s10750-006-0360-4}, - year = {2007}, - type = {Journal Article} -} - -@article{liu2019ph, - author = {朱厚亚 and 刘波 and 张凌云 and 赵莉 and 张德明}, - title = {pH值和光照强度对颤藻生长及产嗅特征的影响}, - journal = {中国给水排水}, - pages = {124-127}, - ISSN = {1000-4602}, - DOI = {https://doi.org/10.19853/j.zgjsps}, - year = {2018}, - type = {Journal Article} -} - -@article{liu2018mib, - author = {刘玉红 and 陈勇 and 俞蕴芳 and 张荣 and 张泾凯}, - title = {2-MIB在某深度处理水厂中的去除规律研究}, - journal = {中国给水排水}, - pages = {124-127}, - ISSN = {1000-4602}, - DOI = {https://doi.org/10.19853/j.zgjsps}, - year = {2018}, - type = {Journal Article} -} - -@article{wang2021an, - author = {Wang, R. and Mao, X. and Gao, L. and Qi, L. J. and Lu, X. Y. and Wang, Y. and Li, J. D. and Xie, C. H. and Yuan, H. and Yan, Z. L. and Qin, L. L.}, - title = {An experimental and numerical study of turbidity currents entering a stratified reservoir}, - journal = {Fresenius Environmental Bulletin}, - volume = {30}, - number = {5}, - pages = {5108-5118}, - ISSN = {1018-4619}, - year = {2021}, - type = {Journal Article} -} - -@article{vanbreemen1995the, - author = {Vanbreemen, Lwca and Ketelaars, H. A. M.}, - title = {The influence of artificial mixing and other factors on algal biomass in the biesbosch reservoirs}, - journal = {Journal of Water Supply Research and Technology-Aqua}, - volume = {44}, - pages = {65-71}, - ISSN = {0003-7214}, - year = {1995}, - type = {Journal Article} -} - - -@Article{lu2019evolutionary, - title = {Evolutionary constraints on species diversity in marine bacterioplankton communities}, - author = {Lu, Hsiao-Pei and Yeh, Yi-Chun and Shiah, Fuh-Kwo and Gong, Gwo-Ching and Hsieh, Chih-hao}, - year = 2019, - journal = {The ISME Journal}, - publisher = {Springer Science and Business Media LLC}, - volume = 13, - pages = {1032–1041}, - url = {http://dx.doi.org/10.1038/s41396-018-0336-1}, - issn = {1751-7370}, - doi = {10.1038/s41396-018-0336-1}, - number = 4} - -@Article{nishio2010effects, - title = {Effects on nutrient load of removing sediments by maintenance dredging in the Port of Osaka}, - author = {NISHIO, TAKAYUKI and SHINYA, MASANAO}, - year = 2010, - journal = {NIPPON SUISAN GAKKAISHI}, - publisher = {Japanese Society of Fisheries Science}, - volume = 76, - pages = {886–893}, - url = {http://dx.doi.org/10.2331/suisan.76.886}, - issn = {0021-5392}, - doi = {10.2331/suisan.76.886}, - number = 5} - -@Article{obertegger2022multiannual, - title = {Multi-annual comparisons of summer and under-ice phytoplankton communities of a mountain lake}, - author = {Obertegger, Ulrike and Flaim, Giovanna and Corradini, Stefano and Cerasino, Leonardo and Zohary, Tamar}, - year = 2022, - journal = {Hydrobiologia}, - publisher = {Springer Science and Business Media LLC}, - volume = 849, - pages = {4613–4635}, - url = {http://dx.doi.org/10.1007/s10750-022-04952-3}, - issn = {1573-5117}, - doi = {10.1007/s10750-022-04952-3}, - number = 21} - -@Article{nyirabuhoro2019seasonal, - title = {Seasonal Variability of Conditionally Rare Taxa in the Water Column Bacterioplankton Community of Subtropical Reservoirs in China}, - author = {Nyirabuhoro, Pascaline and Liu, Min and Xiao, Peng and Liu, Lemian and Yu, Zheng and Wang, Lina and Yang, Jun}, - year = 2019, - journal = {Microbial Ecology}, - publisher = {Springer Science and Business Media LLC}, - volume = 80, - pages = {14–26}, - url = {http://dx.doi.org/10.1007/s00248-019-01458-9}, - issn = {1432-184X}, - doi = {10.1007/s00248-019-01458-9}, - number = 1} - -@inproceedings{naselliflores1999limnological, - author = {Naselli-Flores, L.}, - title = {Limnological aspects of sicilian reservoirs: A comparative, ecosystemic approach}, - booktitle = {Workshop on Theoretical Reservoir Ecology and its Applications}, - pages = {283-311}, - ISBN = {85-87418-02-5}, - year = {1999}, - type = {Conference Proceedings} -} - -@Article{guo2019identification, - title = {Identification of fishy odor causing compounds produced by Ochromonas sp. and Cryptomonas ovate with gas chromatography-olfactometry and comprehensive two-dimensional gas chromatography}, - author = {Guo, Qingyuan and Yu, Jianwei and Zhao, Yunyun and Liu, Tingting and Su, Ming and Jia, Zeyu and Zhao, Yu and Mu, Zhen and Yang, Min}, - year = 2019, - journal = {Science of The Total Environment}, - publisher = {Elsevier BV}, - volume = 671, - pages = {149–156}, - url = {http://dx.doi.org/10.1016/j.scitotenv.2019.03.370}, - issn = {0048-9697}, - doi = {10.1016/j.scitotenv.2019.03.370} -} - -@article{patel2016optimization, - author = {Vijay Patel and David E. Berthold and Sivanesan Dhandayuthapani and Appu Rathinavelu and Miroslav Gantar}, - title = {Optimization of C-phycocyanin production by {{\textit{Limnothrix}}} sp. 37-2-1}, - journal = {Journal of Algal Biomass Utilization}, - volume = {7}, - number = {1}, - pages = {104--111}, - year = {2016}, - url = {http://storage.unitedwebnetwork.com/files/521/a7d198632fc67e762debf41967244a9f.pdf} -} -@Article{zhang2021remote, - title = {Remote sensing estimation of water clarity for various lakes in China}, - author = {Zhang, Yibo and Zhang, Yunlin and Shi, Kun and Zhou, Yongqiang and Li, Na}, - year = 2021, - journal = {Water Research}, - publisher = {Elsevier BV}, - volume = 192, - pages = 116844, - url = {http://dx.doi.org/10.1016/j.watres.2021.116844}, - issn = {0043-1354}, - doi = {10.1016/j.watres.2021.116844} -} - -@Article{song2020quantification, - title = {Quantification of lake clarity in China using Landsat OLI imagery data}, - author = {Song, Kaishan and Liu, Ge and Wang, Qiang and Wen, Zhidan and Lyu, Lili and Du, Yunxia and Sha, Linwei and Fang, Chong}, - year = 2020, - journal = {Remote Sensing of Environment}, - publisher = {Elsevier BV}, - volume = 243, - pages = 111800, - url = {http://dx.doi.org/10.1016/j.rse.2020.111800}, - issn = {0034-4257}, - doi = {10.1016/j.rse.2020.111800} -} - -@Article{strunecky2023an, - title = {An updated classification of cyanobacterial orders and families based on phylogenomic and polyphasic analysis}, - author = {Strunecký, Otakar and Ivanova, Anna Pavlovna and Mareš, Jan}, - year = 2023, - journal = {Journal of Phycology}, - publisher = {Wiley}, - volume = 59, - pages = {12–51}, - url = {http://dx.doi.org/10.1111/jpy.13304}, - issn = {1529-8817}, - doi = {10.1111/jpy.13304}, - number = 1} - -@Article{woolway2020climate, - title = {Climate velocity in inland standing waters}, - author = {Woolway, R. Iestyn and Maberly, Stephen C.}, - year = 2020, - journal = {Nature Climate Change}, - publisher = {Springer Science and Business Media LLC}, - volume = 10, - pages = {1124–1129}, - url = {http://dx.doi.org/10.1038/s41558-020-0889-7}, - issn = {1758-6798}, - doi = {10.1038/s41558-020-0889-7}, - number = 12} - -@Article{deng2022pilotscale, - title = {Pilot-Scale Field Demonstration of Environmental Nanotechnology for Groundwater Defluoridation}, - author = {Deng, Ziniu and Cheng, Sikai and Xu, Nian and Zhang, Xiaolin and Pan, Bingcai}, - year = 2022, - journal = {ACS ES\&T Engineering}, - publisher = {American Chemical Society (ACS)}, - volume = 3, - pages = {226–235}, - url = {http://dx.doi.org/10.1021/acsestengg.2c00284}, - issn = {2690-0645}, - doi = {10.1021/acsestengg.2c00284}, - number = 2} - -@Article{yuan2012biodegradation, - title = {Biodegradation of 2-methylisoborneol by bacteria enriched from biological activated carbon}, - author = {Yuan, Rongfang and Zhou, Beihai and Shi, Chunhong and Yu, Liying and Zhang, Chunlei and Gu, Junnong}, - year = 2012, - journal = {Frontiers of Environmental Science \& Engineering}, - publisher = {Springer Science and Business Media LLC}, - volume = 6, - pages = {701–710}, - url = {http://dx.doi.org/10.1007/s11783-011-0367-6}, - issn = {2095-221X}, - doi = {10.1007/s11783-011-0367-6}, - number = 5} - -@Article{lauderdale2004isolation, - title = {Isolation and characterization of a bacterium capable of removing taste- and odor-causing 2-methylisoborneol from water}, - author = {Lauderdale, Chance V. and Aldrich, Henry C. and Lindner, Angela S.}, - year = 2004, - journal = {Water Research}, - publisher = {Elsevier BV}, - volume = 38, - pages = {4135–4142}, - url = {http://dx.doi.org/10.1016/j.watres.2004.08.014}, - issn = {0043-1354}, - doi = {10.1016/j.watres.2004.08.014}, - number = 19} - -@Article{chen2010in, - title = {In situ measurement of odor compound production by benthic cyanobacteria}, - author = {Chen, Yan-Min and Hobson, Peter and Burch, Michael D. and Lin, Tsair-Fuh}, - year = 2010, - journal = {Journal of Environmental Monitoring}, - publisher = {Royal Society of Chemistry (RSC)}, - volume = 12, - pages = 769, - url = {http://dx.doi.org/10.1039/b918487b}, - issn = {1464-0333}, - doi = {10.1039/b918487b}, - number = 3} - -@Article{gerber1967geosmin, - title = {Geosmin, an earthy‐smelling substance isolated from actinomycetes}, - author = {Gerber, Nancy N.}, - year = 1967, - journal = {Biotechnology and Bioengineering}, - publisher = {Wiley}, - volume = 9, - pages = {321–327}, - url = {http://dx.doi.org/10.1002/bit.260090305}, - issn = {1097-0290}, - doi = {10.1002/bit.260090305}, - number = 3} - - -@article{gerber1969a, - author = {Gerber, Nancy N}, - title = {A volatile metabolite of actinomycetes, 2-methylisoborneol}, - journal = {Antibiotics}, - volume = {22}, - number = {10}, - pages = {508-509}, - ISSN = {0021-8820}, - year = {1969}, - type = {Journal Article} -} - - -@Article{glazer1989light, - title = {Light guides}, - author = {Glazer, A N}, - year = 1989, - journal = {Journal of Biological Chemistry}, - publisher = {Elsevier BV}, - volume = 264, - pages = {1–4}, - url = {http://dx.doi.org/10.1016/S0021-9258(17)31212-7}, - issn = {0021-9258}, - doi = {10.1016/s0021-9258(17)31212-7}, - number = 1} - -@Article{hoefemden2003revision, - title = {Revision of the Genus Cryptomonas (Cryptophyceae): a Combination of Molecular Phylogeny and Morphology Provides Insights into a Long-Hidden Dimorphism}, - author = {Hoef-Emden, Kerstin and Melkonian, Michael}, - year = 2003, - journal = {Protist}, - publisher = {Elsevier BV}, - volume = 154, - pages = {371–409}, - url = {http://dx.doi.org/10.1078/143446103322454130}, - issn = {1434-4610}, - doi = {10.1078/143446103322454130}, - number = {3–4} -} - -@article{kuzuyama2002mevalonate, - author = {Kuzuyama, Tomohisa}, - title = {Mevalonate and nonmevalonate pathways for the biosynthesis of isoprene units}, - journal = {Bioscience, biotechnology,biochemistry}, - volume = {66}, - number = {8}, - pages = {1619-1627}, - ISSN = {0916-8451}, - year = {2002}, - type = {Journal Article} -} - -@inproceedings{mofidi2000using, - title={Using ultraviolet light to achieve multiple water quality objectives}, - author={Mofidi, AA and Coffey, BM and Chou, CI and Luang, S and Green, JF}, - booktitle={AWWA WQTC Conference, Salt Lake City, UT}, - year={2000} -} - -@inproceedings{silvey1963quality, - title={Quality aspects of water distribution systems}, - author={Silvey, JKG}, - booktitle={Proc. Fifth San. Engr. Conf., University of Illinois, Urbana}, - year={1963} -} - -@article{wehr2011freshwater, - author = {Wehr, John D}, - title = {Freshwater algae: identification and use as bioindicators}, - journal = {Phycology}, - volume = {47}, - number = {2}, - pages = {436-438}, - ISSN = {0022-3646}, - year = {2011}, - type = {Journal Article} -} - -@article{kromkamp1984buoyant, - author = {Kromkamp, Jacco C. and Mur, Luuc R. }, - title = {Buoyant density changes in the cyanobacterium Microcystis aeruginosa due to changes in the cellular carbohydrate content}, - journal = {Fems Microbiology Letters}, - volume = {25}, - number = {1}, - pages = {105-109}, - year = {1984}, - type = {Journal Article} -} - -@article{waterone2019funny, - author = {WATERONE}, - title = {Funny Taste or Odor}, - journal = {WaterOne}, - year = {2019}, - type = {Magazine Article} -} - -@article{lin2007modeling, - author = {Lin T. and Hobson P. and Burch M.}, - title = {Modeling the mass balance of two cyanobacterial odorants in reservoirs}, - journal = {3rd International Conference on Sustainable Water Environment: Integrated Water Resources Management–New Steps}, - year = {2007}, - number = {24-25} -} - - -@Article{liu2019metagenomic, - title = {Metagenomic and metatranscriptomic analyses reveal activity and hosts of antibiotic resistance genes in activated sludge}, - author = {Liu, Zongbao and Klümper, Uli and Liu, Yang and Yang, Yuchun and Wei, Qiaoyan and Lin, Jih-Gaw and Gu, Ji-Dong and Li, Meng}, - year = 2019, - journal = {Environment International}, - publisher = {Elsevier BV}, - volume = 129, - pages = {208–220}, - url = {http://dx.doi.org/10.1016/j.envint.2019.05.036}, - issn = {0160-4120}, - doi = {10.1016/j.envint.2019.05.036} -} - -@Article{treuer2021challenges, - title = {Challenges of managing harmful algal blooms in US drinking water systems}, - author = {Treuer, Galen and Kirchhoff, Christine and Lemos, Maria Carmen and McGrath, Francesca}, - year = 2021, - journal = {Nature Sustainability}, - publisher = {Springer Science and Business Media LLC}, - volume = 4, - pages = {958–964}, - url = {http://dx.doi.org/10.1038/s41893-021-00770-y}, - issn = {2398-9629}, - doi = {10.1038/s41893-021-00770-y}, - number = 11} - -@Article{moore2023naturebased, - title = {Nature-Based Solution to Eliminate Cyanotoxins in Water Using Biologically Enhanced Biochar}, - author = {Moore, Jane and Jayakumar, Anjali and Soldatou, Sylvia and Mašek, Ondřej and Lawton, Linda A and Edwards, Christine}, - year = 2023, - journal = {Environmental Science \& Technology}, - publisher = {American Chemical Society (ACS)}, - volume = 57, - pages = {16372–16385}, - url = {http://dx.doi.org/10.1021/acs.est.3c05298}, - issn = {1520-5851}, - doi = {10.1021/acs.est.3c05298}, - number = 43} - -@Article{juttner2007biochemical, - title = {Biochemical and Ecological Control of Geosmin and 2-Methylisoborneol in Source Waters}, - author = {Jüttner, Friedrich and Watson, Susan B.}, - year = 2007, - journal = {Applied and Environmental Microbiology}, - publisher = {American Society for Microbiology}, - volume = 73, - pages = {4395–4406}, - url = {http://dx.doi.org/10.1128/AEM.02250-06}, - issn = {1098-5336}, - doi = {10.1128/aem.02250-06}, - number = 14} - -@Article{franklin2023potential, - title = {Potential sources and producers of 2-methylisoborneol and geosmin in a river supplying a drinking water treatment plant}, - author = {Franklin, Hannah M. and Podduturi, Raju and Jørgensen, Niels O.G. and Roberts, David T. and Schlüter, Louise and Burford, Michele A.}, - year = 2023, - journal = {Chemical Engineering Journal Advances}, - publisher = {Elsevier BV}, - volume = 14, - pages = 100455, - url = {http://dx.doi.org/10.1016/j.ceja.2023.100455}, - issn = {2666-8211}, - doi = {10.1016/j.ceja.2023.100455} -} - -@Article{watson2023isopropylthiol, - title = {Isopropylthiol emission by bloom-forming Microcystis: Biochemistry, ecophysiology and semiochemistry of a volatile organosulfur compound}, - author = {Watson, Susan B. and Jüttner, Friedrich}, - year = 2023, - journal = {Harmful Algae}, - publisher = {Elsevier BV}, - volume = 130, - pages = 102527, - url = {http://dx.doi.org/10.1016/j.hal.2023.102527}, - issn = {1568-9883}, - doi = {10.1016/j.hal.2023.102527} -} - -@book{who2022guidelines, - title = {Guidelines for {{Drinking}}-{{Water Quality}}: Fourth edition incorporating the first and second addenda}, - author = {WHO, World Health Organization}, - year = 2022, - pages = {1--614}, - address = {Geneva, Switzerland}, - institution = {{World Health Organization}}, - isbn = {978-92-4-004506-4} -} - -@article{cheng2022huan, - author = {成建国,马力通,赵文渊 \& 刘云颖}, - title = {环境因素对淡水浮丝藻生长及产生嗅味的影响}, - journal = {水生态学杂志}, - volume = {43}, - pages = {70--76}, - year = {2022}, - issn = {1674-3075}, - doi ={10.15928/j.1674-3075.202008180236} - } - -@Article{shizuka2021forecasting, - title = {Forecasting a 2-methylisoborneol outbreak in a brackish lake}, - author = {Shizuka, Kazunori and Maie, Nagamitsu and Kakino, Wataru and Taruya, Hiroyuki and Tanji, Hajime}, - year = 2021, - journal = {Environmental Monitoring and Assessment}, - publisher = {Springer Science and Business Media LLC}, - volume = 193, - url = {http://dx.doi.org/10.1007/s10661-021-09140-9}, - issn = {1573-2959}, - doi = {10.1007/s10661-021-09140-9}, - number = 7} - -@Article{liu2015occurrence, - title = {Occurrence and Emergency Response of 2‐Methylisoborneol and Geosmin in a Large Shallow Drinking Water Reservoir}, - author = {Liu, Hongbo and Pan, Ding and Zhu, Mengling and Zhang, Dong}, - year = 2015, - journal = {CLEAN – Soil, Air, Water}, - publisher = {Wiley}, - volume = 44, - pages = {63–71}, - url = {http://dx.doi.org/10.1002/clen.201500077}, - issn = {1863-0669}, - doi = {10.1002/clen.201500077}, - number = 1} - -@Article{goh2024microcystis, - title = {Microcystis genotypes in a tropical freshwater lake: Discovery of novel MIB-producing Microcystis with potentially unique synthesis pathway}, - author = {Goh, Kwan Chien and Sim, Zhi Yang and Te, Shu Harn and He, Yiliang and Gin, Karina Yew-Hoong}, - year = 2024, - journal = {Science of The Total Environment}, - publisher = {Elsevier BV}, - volume = 912, - pages = 169249, - url = {http://dx.doi.org/10.1016/j.scitotenv.2023.169249}, - issn = {0048-9697}, - doi = {10.1016/j.scitotenv.2023.169249} -} - -@Article{shi2023distribution, - title = {Distribution, driving forces, and risk assessment of 2-MIB and its producer in a drinking water source-oriented shallow lake}, - author = {Shi, Xinyi and Huang, Qinghui and Shen, Xiaobing and Wu, Jianbin and Nan, Jing and Li, Jianhua and Lu, Haiming and Yang, Changtao}, - year = 2023, - journal = {Environmental Science and Pollution Research}, - publisher = {Springer Science and Business Media LLC}, - volume = 30, - pages = {71194–71208}, - url = {http://dx.doi.org/10.1007/s11356-023-27506-z}, - issn = {1614-7499}, - doi = {10.1007/s11356-023-27506-z}, - number = 27 -} -@Article{visentin2019performance, - title = {Performance of vacuum UV (VUV) for the degradation of MC-LR, geosmin, and MIB from cyanobacteria-impacted waters}, - author = {Visentin, Flavia and Bhartia, Siddharth and Mohseni, Madjid and Dorner, Sarah and Barbeau, Benoit}, - year = 2019, - journal = {Environmental Science: Water Research \& Technology}, - publisher = {Royal Society of Chemistry (RSC)}, - volume = 5, - pages = {2048–2058}, - url = {http://dx.doi.org/10.1039/C9EW00538B}, - issn = {2053-1419}, - doi = {10.1039/c9ew00538b}, - number = 11} - -@article{shizuka2020diversity, - title={Diversity of 2-MIB-Producing cyanobacteria in Lake Ogawara: microscopic and molecular ecological approaches}, - author={Kazunori Shizuka and Makoto Ikenaga and Jun Murase and Natsuko Nakayama and Noriaki Matsuya and Wataru Kakino and Hiroyuki Taruya and Nagamitsu Maie}, - journal={Aquaculture Science}, - volume={68}, - number={1}, - pages={9-23}, - year={2020}, - doi={10.11233/aquaculturesci.68.9} -} -@Article{li2023aquaculture, - title = {Aquaculture activities influencing the generation of geosmin and 2-methylisoborneol: a case study in the aquaculture regions of Hongze Lake, China}, - author = {Li, Zhonghua and Cao, Guoqing and Qiu, Liping and Chen, Xi and Zhong, Liqiang and Wang, Xinchi and Xu, Huimin and Wang, Changbo and Fan, Limin and Meng, Shunlong and Chen, Jiazhang and Song, Chao}, - year = 2023, - journal = {Environmental Science and Pollution Research}, - publisher = {Springer Science and Business Media LLC}, - url = {http://dx.doi.org/10.1007/s11356-023-31329-3}, - issn = {1614-7499}, - doi = {10.1007/s11356-023-31329-3} -} - -@Article{otten2016elucidation, - title = {Elucidation of Taste- and Odor-Producing Bacteria and Toxigenic Cyanobacteria in a Midwestern Drinking Water Supply Reservoir by Shotgun Metagenomic Analysis}, - author = {Otten, Timothy G. and Graham, Jennifer L. and Harris, Theodore D. and Dreher, Theo W.}, - year = 2016, - journal = {Applied and Environmental Microbiology}, - publisher = {American Society for Microbiology}, - volume = 82, - pages = {5410–5420}, - url = {http://dx.doi.org/10.1128/AEM.01334-16}, - issn = {1098-5336}, - doi = {10.1128/aem.01334-16}, - number = 17, - editor = {Voordouw, G.} -} - -@Article{li2023aquaculture, - title = {Aquaculture activities influencing the generation of geosmin and 2-methylisoborneol: a case study in the aquaculture regions of Hongze Lake, China}, - author = {Li, Zhonghua and Cao, Guoqing and Qiu, Liping and Chen, Xi and Zhong, Liqiang and Wang, Xinchi and Xu, Huimin and Wang, Changbo and Fan, Limin and Meng, Shunlong and Chen, Jiazhang and Song, Chao}, - year = 2023, - journal = {Environmental Science and Pollution Research}, - publisher = {Springer Science and Business Media LLC}, - url = {http://dx.doi.org/10.1007/s11356-023-31329-3}, - issn = {1614-7499}, - doi = {10.1007/s11356-023-31329-3} -} -@Article{chong2018predicting, - title = {Predicting Taste and Odor Compounds in a Shallow Reservoir Using a Three–Dimensional Hydrodynamic Ecological Model}, - author = {Chong, Suna and Lee, Heesuk and An, Kwang-Guk}, - year = 2018, - journal = {Water}, - publisher = {MDPI AG}, - volume = 10, - pages = 1396, - url = {http://dx.doi.org/10.3390/w10101396}, - issn = {2073-4441}, - doi = {10.3390/w10101396}, - number = 10} - -@Article{clercin2021occurrences, - title = {Occurrences of 2-methylisoborneol and geosmin –degrading bacteria in a eutrophic reservoir and the role of cell-bound versus dissolved fractions}, - author = {Clercin, Nicolas A. and Druschel, Gregory K. and Gray, Mark}, - year = 2021, - journal = {Journal of Environmental Management}, - publisher = {Elsevier BV}, - volume = 297, - pages = 113304, - url = {http://dx.doi.org/10.1016/j.jenvman.2021.113304}, - issn = {0301-4797}, - doi = {10.1016/j.jenvman.2021.113304} -} - -@Article{paerl2022investigating, - title = {Investigating the Microbial Culprits of Taste/Odor Issues in City of Durham Drinking Water Reservoir Lake Michie and Algicidal Mitigation Tactics}, - author = {Paerl, Ryan and Huang, Hwa and Ehrlich, Linda}, - year = {2022}, - publisher = {NC WRRI}, - url = {https://repository.lib.ncsu.edu/items/b4a3fd3e-228c-41f0-80b1-a9adc62e9b48}, - pages = {1--52} -} - - -@Article{park2014characteristics, - title = {Characteristics of actinomycetes producing geosmin in Paldang Lake, Korea}, - author = {Park, Tae-Jin and Yu, Mi-Na and Kim, Hye-Sung and Cho, Hang-Soo and Hwang, Moon-Young and Yang, Hyung-Jae and Lee, Jae-Chan and Lee, Jae-Kwan and Kim, Shin-Jo}, - year = 2014, - journal = {Desalination and Water Treatment}, - publisher = {Informa UK Limited}, - volume = 57, - pages = {888–899}, - url = {http://dx.doi.org/10.1080/19443994.2014.970583}, - issn = {1944-3986}, - doi = {10.1080/19443994.2014.970583}, - number = 2} - -@Article{zhang2022threedimensional, - title = {Three-Dimensional Structural Modeling (3D SM) and Joint Geophysical Characterization (JGC) of Hydrocarbon Reservoir}, - author = {Zhang, Baoyi and Tong, Yongqiang and Du, Jiangfeng and Hussain, Shafqat and Jiang, Zhengwen and Ali, Shahzad and Ali, Ikram and Khan, Majid and Khan, Umair}, - year = 2022, - journal = {Minerals}, - volume = 12, - url = {https://www.mdpi.com/2075-163X/12/3/363}, - number = 3, - article-number=363, - issn = {2075-163X}, - doi = {10.3390/min12030363} -} - -@Article{hayashi2022phylogenetic, - title = {Phylogenetic Analysis and Characterization of Odorous Compound-Producing Actinomycetes in Sediments in the Sanbe Reservoir, A Drinking Water Reservoir in Japan}, - author = {Hayashi, Shohei and Masuki, Shingo and Furuta, Koichi and Doi, Shinichi and Kim, Sangyeob and Seike, Yasushi}, - year = 2022, - journal = {Current Microbiology}, - publisher = {Springer Science and Business Media LLC}, - volume = 79, - url = {http://dx.doi.org/10.1007/s00284-022-03052-8}, - issn = {1432-0991}, - doi = {10.1007/s00284-022-03052-8}, - number = 11} - -@Article{li2023shift, - title = {Shift of phytoplankton and microbial communities cause seasonal dynamics of odor compounds in Oncorhynchus mykiss cultured in a freshwater reservoir}, - author = {Li, Shuting and Wei, Fayi and Dong, Xuan and Pan, Miaojun and Li, Li and Tian, Xiangli and Gao, Qinfeng and Wilson, Alan E.}, - year = 2023, - journal = {Aquaculture}, - publisher = {Elsevier BV}, - volume = 570, - pages = 739422, - url = {http://dx.doi.org/10.1016/j.aquaculture.2023.739422}, - issn = {0044-8486}, - doi = {10.1016/j.aquaculture.2023.739422} -} - -@Article{boivin2023the, - title = {The rapid counting method for 2-MIB-producing cyanobacteria (Pseudanabaena sp.) using fluorescence detection of phycocyanin pigments in algal cells}, - author = {Boivin, Sandrine and Hasegawa, Eri and Yamaguchi, Dabide and Fujioka, Takahiro}, - year = 2023, - journal = {Environ. Sci.: Water Res. Technol.}, - publisher = {The Royal Society of Chemistry}, - volume = 9, - pages = {2561--2568}, - url = {http://dx.doi.org/10.1039/D3EW00282A}, - issue = 10, - doi = {10.1039/D3EW00282A} -} - -@Article{wang2015seasonal, - title = {Seasonal occurrence and species specificity of fishy and musty odor in Huajiang Reservoir in winter, China}, - author = {Wang, Rui and Li, Dong and Jin, Chao Xi and Yang, Bing Wu}, - year = 2015, - journal = {Water Resources and Industry}, - publisher = {Elsevier BV}, - volume = 11, - pages = {13–26}, - url = {http://dx.doi.org/10.1016/j.wri.2015.04.002}, - issn = {2212-3717}, - doi = {10.1016/j.wri.2015.04.002} -} - -@Article{olsen2016nutrient, - title = {Nutrient enrichment and vertical mixing mediate 2-methylisoborneol and geosmin concentrations in a drinking water reservoir}, - author = {Olsen, Brianna K. and Chislock, Michael F. and Rebelein, Anja and Wilson, Alan E.}, - year = 2016, - journal = {Water Supply}, - publisher = {IWA Publishing}, - volume = 17, - pages = {500–507}, - url = {http://dx.doi.org/10.2166/ws.2016.159}, - issn = {1607-0798}, - doi = {10.2166/ws.2016.159}, - number = 2} - -@Article{ren2022mechanisms, - title = {Mechanisms and application of the IAST-EBC model for predicting 2-MIB adsorption by PAC in authentic raw waters: Correlation between NOM competitiveness and water quality parameters}, - author = {Ren, Junying and Yang, Sihui and Li, Lei and Yu, Shuili and Gao, Naiyun}, - year = 2022, - journal = {Journal of Hazardous Materials}, - publisher = {Elsevier BV}, - volume = 427, - pages = 127904, - url = {http://dx.doi.org/10.1016/j.jhazmat.2021.127904}, - issn = {0304-3894}, - doi = {10.1016/j.jhazmat.2021.127904} -} - -@Article{xuwei2019the, - title = {The relationships between odors and environmental factors at bloom and non-bloom area in Lake Taihu, China}, - author = {Xuwei, Deng and Min, Qi and ren, Ren and Jiarui, Liu and Xiaoxue, Sun and Ping, Xie and Jun, Chen}, - year = 2019, - journal = {Chemosphere}, - publisher = {Elsevier BV}, - volume = 218, - pages = {569–576}, - url = {http://dx.doi.org/10.1016/j.chemosphere.2018.11.121}, - issn = {0045-6535}, - doi = {10.1016/j.chemosphere.2018.11.121} -} - -@Article{jea2019characteristics, - title = {Characteristics of Cyanobacteria and Odorous Compounds Production in Lake Uiam and Lower Gonji Stream}, - author = {YounSeok Jea and ImJong Kwon and ByeonMyeong-Seop and YuSoon Ju}, - year = 2019, - journal = {Journal of Korean Society on Water Environment}, - publisher = {한국물환경학회}, - volume = 35, - pages = {99--104}, - number = 2} - -@mastersthesis{koltsidou2019detection, - author = {Koltsidou, Ioanna}, - title = {Detection and Quantification of Taste and Odor Producing Bacteria in Eagle Creek Reservoir}, - school = {Purdue University}, - year = {2019}, - address = {Indianapolis, Indiana}, - month = {August}, - type = {Master of Science}, - department = {Biological Sciences}, -} - -@Article{jeonghwan2023study, - title = {Study of the cause of the generation of odor compounds (geosmin and 2-methylisoborneol) in the Han River system, the drinking water source, Republic of Korea}, - author = {Jeong Hwan, Byun and Kim, Hun Nyun and Kang, Tae Gu and Kim, Baik-Ho and Byeon, Myeong-Seop}, - year = 2023, - journal = {Water Supply}, - publisher = {IWA Publishing}, - volume = 23, - pages = {1081–1093}, - url = {http://dx.doi.org/10.2166/ws.2023.037}, - issn = {1607-0798}, - doi = {10.2166/ws.2023.037}, - number = 3} - -@Article{perkins2019managing, - title = {Managing taste and odour metabolite production in drinking water reservoirs: The importance of ammonium as a key nutrient trigger}, - author = {Perkins, R.G. and Slavin, E.I. and Andrade, T.M.C. and Blenkinsopp, C. and Pearson, P. and Froggatt, T. and Godwin, G. and Parslow, J. and Hurley, S. and Luckwell, R. and Wain, D.J.}, - year = 2019, - journal = {Journal of Environmental Management}, - publisher = {Elsevier BV}, - volume = 244, - pages = {276–284}, - url = {http://dx.doi.org/10.1016/j.jenvman.2019.04.123}, - issn = {0301-4797}, - doi = {10.1016/j.jenvman.2019.04.123} -} - -@Article{salvo2020benthic, - title = {Benthic macroinvertebrate assemblages of a stream-lake network in the upper zone of the trans-Andean basin of the Valdivia River (Chile)}, - author = {Salvo, Jacqueline and Valdovinos, Claudio and Fierro, Pablo}, - year = 2020, - journal = {New Zealand Journal of Marine and Freshwater Research}, - publisher = {Informa UK Limited}, - pages = {1–18}, - url = {http://dx.doi.org/10.1080/00288330.2020.1784239}, - issn = {1175-8805}, - doi = {10.1080/00288330.2020.1784239} -} - -@Article{lopes2022offflavor, - title = {Off-flavor detection in tilapia reared in cages in tropical lakes}, - author = {Lopes, Taciana Onesorge Miranda and Pinto, Ernani and Passos, Larissa Souza and Dorr, Fabiane and Vasconcelos, Christiane Mileib and Arpini, Clarisse and Silva, Marli Oliveira and Pereira, Tatiana Miura and Coppo, Gabriel Carvalho and Merçon, Julia and Gomes, Levy Carvalho}, - year = 2022, - journal = {Aquaculture}, - publisher = {Elsevier BV}, - volume = 555, - pages = 738215, - url = {http://dx.doi.org/10.1016/j.aquaculture.2022.738215}, - issn = {0044-8486}, - doi = {10.1016/j.aquaculture.2022.738215} -} - -@phdthesis{clercin2019origin, - author = {Clercin, Nicolas André}, - title = {Origin and Fate of Odorous Metabolites, 2-Methylisoborneol and Geosmin, in a Eutrophic Reservoir}, - school = {Indiana University}, - year = {2019}, - month = {June}, - type = {Doctor of Philosophy}, - department = {Earth Sciences}, - url = {https://api.semanticscholar.org/CorpusID:199077576} -} - -@InProceedings{du2017rapid, - title = {Rapid Determination of Geosmin and 2-MIB in Water by Headspace Solid Phase Microextraction Gas Chromatography-Mass Spectrometry}, - author = {Du, Kang and Zhou, Beihai and Yuan, Rongfang and Li, Hui}, - year = 2017, - booktitle = {2017 9th International Conference on Measuring Technology and Mechatronics Automation (ICMTMA)}, - publisher = {IEEE}, - url = {http://dx.doi.org/10.1109/ICMTMA.2017.0119}, - doi = {10.1109/icmtma.2017.0119} -} - -@Article{jiang2021microbial, - title = {Microbial diversity characteristics and the influence of environmental factors in a large drinking-water source}, - author = {Jiang, Tingting and Sun, Sainan and Chen, Yanan and Qian, Yunkun and Guo, Jun and Dai, Ruihua and An, Dong}, - year = 2021, - journal = {Science of The Total Environment}, - publisher = {Elsevier BV}, - volume = 769, - pages = 144698, - url = {http://dx.doi.org/10.1016/j.scitotenv.2020.144698}, - issn = {0048-9697}, - doi = {10.1016/j.scitotenv.2020.144698} -} - -@Article{bertone2016analysis, - title = {Analysis and Modelling of Taste and Odour Events in a Shallow Subtropical Reservoir}, - author = {Bertone, Edoardo and O’Halloran, Kelvin}, - year = 2016, - journal = {Environments}, - publisher = {MDPI AG}, - volume = 3, - pages = 22, - url = {http://dx.doi.org/10.3390/environments3030022}, - issn = {2076-3298}, - doi = {10.3390/environments3030022}, - number = 4} - -@Article{zhang2019cyanobacteria, - title = {Cyanobacteria derived taste and odor characteristics in various lakes in China: Songhua Lake, Chaohu Lake and Taihu Lake}, - author = {Zhang, Rui and Qi, Fei and Liu, Chao and Zhang, Yuting and Wang, Yiping and Song, Zilong and Kumirska, Jolanta and Sun, Dezhi}, - year = 2019, - journal = {Ecotoxicology and Environmental Safety}, - publisher = {Elsevier BV}, - volume = 181, - pages = {499–507}, - url = {http://dx.doi.org/10.1016/j.ecoenv.2019.06.046}, - issn = {0147-6513}, - doi = {10.1016/j.ecoenv.2019.06.046} -} - -@article{novo2023antibiotics, - author = {Novo, Bruna de Lemos and Gomes da Silva, Fernanda Arruda Nogueira and Bertolino, Luiz Carlos and Yokoyama, Lidia}, - title = {Antibiotics in Water Bodies, Cyanobacterial Toxicity and Odorous Compounds Release: A Review}, - journal = {Water SA}, - volume = {49}, - number = {4}, - year = {2023}, - month = {November 1}, - keywords = {cyanobacterial blooms, antibiotics, toxicity, geosmin, 2-methylisoborneol}, -} - -@mastersthesis{howard2020tasteodor, - author = {Howard, Chase Steven}, - title = {Taste and Odor Event Dynamics of a Midwestern Freshwater Reservoir}, - school = {Indiana University}, - year = {2020}, - month = {November}, - language = {American English}, - chair = {Druschel, Gregory K.}, - committee = {Jacinthe, Pierre-André and Picard, Christine J.}, - type = {M.S.}, - department = {Department of Earth Science}, - grantor = {Indiana University} -} - -@Article{young2023bacteriophage, - title = {Bacteriophage communities are a reservoir of unexplored microbial diversity in neonatal health and disease}, - author = {Young, Gregory R and Nelson, Andrew and Stewart, Christopher J and Smith, Darren L}, - year = 2023, - journal = {Current Opinion in Microbiology}, - publisher = {Elsevier BV}, - volume = 75, - pages = 102379, - url = {http://dx.doi.org/10.1016/j.mib.2023.102379}, - issn = {1369-5274}, - doi = {10.1016/j.mib.2023.102379} -} - -@Article{soyluoglu2022removal, - title = {Removal mechanisms of geosmin and MIB by oxygen nanobubbles during water treatment}, - author = {Soyluoglu, Meryem and Kim, Daekyun and Zaker, Yeakub and Karanfil, Tanju}, - year = 2022, - journal = {Chemical Engineering Journal}, - publisher = {Elsevier BV}, - volume = 443, - pages = 136535, - url = {http://dx.doi.org/10.1016/j.cej.2022.136535}, - issn = {1385-8947}, - doi = {10.1016/j.cej.2022.136535} -} - -@Article{shin2018oxidation, - title = {Oxidation kinetics of algal-derived taste and odor compounds during water treatment with ferrate(VI)}, - author = {Shin, Jaedon and Lee, Donghyeon and Hwang, Tae-Mun and Lee, Yunho}, - year = 2018, - journal = {Chemical Engineering Journal}, - publisher = {Elsevier BV}, - volume = 334, - pages = {1065–1073}, - url = {http://dx.doi.org/10.1016/j.cej.2017.10.057}, - issn = {1385-8947}, - doi = {10.1016/j.cej.2017.10.057} -} - -@Article{li2022determination, - title = {Determination of 2-Methylisoborneol and Geosminin Water by Using Stir Bar Sorptive Extraction-Thermal Desorption Coupled with GC-MS}, - author = {Chuanjiang Li and Li, Genxiang and Liu, Peng and Chen, Zhilong and Hu, Han and Zhang, Lisong and Zhang, Ming and Ruan, Dongliang}, - year = 2022, - journal = {Journal of Water Chemistry and Technology}, - publisher = {Allerton Press}, - volume = 44, - pages = {96–100}, - url = {http://dx.doi.org/10.3103/S1063455X22020084}, - issn = {1934-936X}, - doi = {10.3103/s1063455x22020084}, - number = 2} - -@Article{chen2018pilot, - title = {Pilot study on advanced treatment of geosmin and 2-MIB with O3/GAC}, - author = {Chen, Siying and Dong, Bingzhi and Gao, Kuo and Li, Tian}, - year = 2018, - journal = {Water Supply}, - publisher = {IWA Publishing}, - volume = 19, - pages = {1253–1263}, - url = {http://dx.doi.org/10.2166/ws.2018.184}, - issn = {1607-0798}, - doi = {10.2166/ws.2018.184}, - number = 4} - -@Article{li2022cooccurrence, - title = {Co-occurrence of multiple cyanotoxins and taste-and-odor compounds in the large eutrophic Lake Taihu, China: Dynamics, driving factors, and challenges for risk assessment}, - author = {Li, Hongmin and Gu, Xiaohong and Chen, Huihui and Mao, Zhigang and Shen, Ruijie and Zeng, Qingfei and Ge, You}, - year = 2022, - journal = {Environmental Pollution}, - publisher = {Elsevier BV}, - volume = 294, - pages = 118594, - url = {http://dx.doi.org/10.1016/j.envpol.2021.118594}, - issn = {0269-7491}, - doi = {10.1016/j.envpol.2021.118594} -} - -@Article{harris2016combined, - title = {Combined effects of nitrogen to phosphorus and nitrate to ammonia ratios on cyanobacterial metabolite concentrations in eutrophic Midwestern USA reservoirs}, - author = {Harris, Theodore and Smith, Val and Graham, Jennifer and Van de Waal, Dedmer and Tedesco, Lenore and Clercin, Nicolas}, - year = 2016, - journal = {Inland Waters}, - publisher = {Freshwater Biological Association}, - volume = 6, - pages = {199–210}, - url = {http://dx.doi.org/10.5268/IW-6.2.938}, - issn = {2044-205X}, - doi = {10.5268/iw-6.2.938}, - number = 2} - -@mastersthesis{olsen2015evaluating, - author = {Olsen, Brianna Kathryn}, - title = {Evaluating the Contribution of Physicochemical Parameters to Two Common Off-flavor Compounds in a Drinking Water Reservoir}, - school = {Auburn University}, - year = {2015}, - month = {May 9}, - type = {Master of Science}, - address = {Auburn, Alabama}, - keywords = {MIB, geosmin, cyanobacteria, diatoms, mixing, nutrients}, - note = {Copyright 2015 by Brianna Kathryn Olsen}, - approvedby = {Alan Wilson, Chair, Associate Professor in the School of Fisheries, Aquaculture, and Aquatic Sciences, Auburn University - Dennis Devries, Professor in the School of Fisheries, Aquaculture, and Aquatic Sciences, Auburn University - Clifton Ruehl, Assistant Professor in the Department of Biology, Columbus State University}, -} - - -@Article{lohaka2022preliminary, - title = {Preliminary study of the structure of the aquatic macroinvertebrate stands in lake Mai Ndombe in the province of Mai Ndombe in the RDC}, - author = {Jean Djonga Lohaka and Jean-Claude Tshijik Kamb and Pascal Isumbisho and Edouard Mbungu Sisa and Thérèse Lokwa Eume}, - year = 2022, - journal = {International Journal of Science and Research Archive}, - publisher = {GSC Online Press}, - volume = 6, - pages = {125–138}, - url = {http://dx.doi.org/10.30574/ijsra.2022.6.1.0114}, - issn = {2582-8185}, - doi = {10.30574/ijsra.2022.6.1.0114}, - number = 1} - -@article{chen2019distribution, - author = {Chen, Xiaoqiang and Zhang, Chi and Xu, Shiguo}, - title = {Distribution Characteristics and Influencing Factors of MIB and GSM in Drinking Water Reservoirs}, - journal = {Geophysical Research Abstracts}, - year = {2019}, - volume = {21}, - pages = {1}, - issn = {1029-7006}, - url = {https://meetingorganizer.copernicus.org/EGU2019/EGU2019-6605.pdf}, - abstract = {MIB(2-methylisoborneol) and GSM(geosmin) are two typical taste and odor compounds related to poor organoleptics in drinking water. MIB and GSM in three drinking water reservoirs, Biliuhe Reservoir, Dongfeng Reservoir, and Tanghe Reservoir, which are located in Liaoning Province were investigated. The results indicated that during the winter ice-covered period, the concentration of MIB and GSM in three reservoirs decreased in order of Dongfeng reservoir > Biliuhe Reservoir > Tanghe Reservoir. In Biliuhe Reservoir, the concentration of surface MIB and GSM in the shallow regions was slightly higher in the spring ice-melt period than that in winter. Surface MIB and GSM presented higher concentrations in the shallow regions than deep regions. During the ice-covered period, most sample sites exhibited higher MIB concentration in the bottom layer than the surface layer, implying that sediments might be a possible source of taste and odor compounds. In addition, there was no remarkable relationship between MIB/GSM and algae density. However, MIB was positively correlated to TN and NO3—N and significantly correlated to TP. This suggested phosphorous, the limiting nutrient, was an important factor that influenced the growth of algae and their release of the taste and odor compounds.} -} - -@Article{park2017a, - title = {A Physical Pre-Treatment Method (Vertical Weir Curtain) for Mitigating Cyanobacteria and Some of Their Metabolites in a Drinking Water Reservoir}, - author = {Park, Chae-Hong and Park, Myung-Hwan and Kim, Keun-Hee and Kim, Nan-Young and Kim, Young-Hyo and Gwon, Eun-Mi and Kim, Baik-Ho and Lim, Byung-Jin and Hwang, Soon-Jin}, - year = 2017, - journal = {Water}, - publisher = {MDPI AG}, - volume = 9, - pages = 775, - url = {http://dx.doi.org/10.3390/w9100775}, - issn = {2073-4441}, - doi = {10.3390/w9100775}, - number = 10} - -@Article{yu2019taste, - title = {Taste and odor compounds associated with aquatic plants in Taihu Lake: distribution and producing potential}, - author = {Yu, Cencen and Shi, Chenfei and Ji, Ming and Xu, Xiaoguang and Zhang, Zhongqian and Ma, Jie and Wang, Guoxiang}, - year = 2019, - journal = {Environmental Science and Pollution Research}, - publisher = {Springer Science and Business Media LLC}, - volume = 26, - pages = {34510–34520}, - url = {http://dx.doi.org/10.1007/s11356-019-06188-6}, - issn = {1614-7499}, - doi = {10.1007/s11356-019-06188-6}, - number = 33} - -@Article{asada2023effects, - title = {Effects of raw water quality on the adsorptive removal of 2-methylisoborneol by powdered activated carbon under non-equilibrium conditions}, - author = {Asada, Yasuhiro and Hayasaka, Shunichi and Miyoshi, Taro and Tokuyasu, Marina and Akiba, Michihiro}, - year = 2023, - journal = {AQUA — Water Infrastructure, Ecosystems and Society}, - publisher = {IWA Publishing}, - volume = 72, - pages = {1084–1095}, - url = {http://dx.doi.org/10.2166/aqua.2023.077}, - issn = {2709-8036}, - doi = {10.2166/aqua.2023.077}, - number = 6} - -@Article{zhang2016occurrence, - title = {Occurrence of earthy–musty taste and odors in the Taihu Lake, China: spatial and seasonal patterns}, - author = {Zhang, Yingchao and Zhang, Ni and Xu, Bingbing and Kumirska, Jolanta and Qi, Fei}, - year = 2016, - journal = {RSC Advances}, - publisher = {Royal Society of Chemistry (RSC)}, - volume = 6, - pages = {79723–79733}, - url = {http://dx.doi.org/10.1039/C6RA16733K}, - issn = {2046-2069}, - doi = {10.1039/c6ra16733k}, - number = 83} - -@Article{lee2023qpcrbased, - title = {qPCR-Based Monitoring of 2-Methylisoborneol/Geosmin-Producing Cyanobacteria in Drinking Water Reservoirs in South Korea}, - author = {Lee, Jung Eun and Park, Rumi and Yu, Mina and Byeon, Myeongseop and Kang, Taegu}, - year = 2023, - journal = {Microorganisms}, - publisher = {MDPI AG}, - volume = 11, - pages = 2332, - url = {http://dx.doi.org/10.3390/microorganisms11092332}, - issn = {2076-2607}, - doi = {10.3390/microorganisms11092332}, - number = 9} - -@inbook{okada2019development, - author = {Okada, Y. and Shima, K. and Okabe, K. and Arakawa, N. and Watabe, Y. and Hongou, M. and Kushibiki, H.}, - title = {Development of a Prediction Model Used in Measures for Reducing Mold Odor in Dam Reservoirs}, - booktitle = {Sustainable and Safe Dams Around the World}, - editor = {Tournier, Bennett and Bibeau}, - year = {2019}, - publisher = {Canadian Dam Association}, - address = {ISBN 978-0-367-33422-2}, - organization= {River Engineering Division, Nihon Suido Consultants CO., Ltd., Tokyo, Japan - Sapporo Development and Construction Department, Hokkaido Regional Development Bureau, Ministry of Land, Infrastructure, Transport and Tourism, Government of Japan, Hokkaido, Japan}, -} - -@Article{yang2021longterm, - title = {[Long-term Changes and Drivers of Ecological Security in Shahe Reservoir, China]}, - author = {Yang, Wen-Bin and Duan, Wen-Xiu and Cui, Yang and Zhu, Guang-Wei and Wu, Tian-Hao and Xu, Hai and Zhu, Meng-Yuan}, - year = 2021, - journal = {Huan jing ke xue= Huanjing kexue}, - volume = 42, - pages = {4739—4752}, - url = {https://doi.org/10.13227/j.hjkx.202101125}, - doi = {10.13227/j.hjkx.202101125}, - number = 10, - issn = {0250-3301} -} - -@Article{zhu2023odour, - title = {Odour management in drinking water systems fed by mixed water supplies}, - author = {Zhu, Jin and Stuetz, Richard M. and Hamilton, Lisa and Power, Kaye and Tamburic, Bojan}, - year = 2023, - journal = {Journal of Water Process Engineering}, - publisher = {Elsevier BV}, - volume = 56, - pages = 104329, - url = {http://dx.doi.org/10.1016/j.jwpe.2023.104329}, - issn = {2214-7144}, - doi = {10.1016/j.jwpe.2023.104329} -} - -@Article{jiang2015spatial, - title = {Spatial and Temporal Variations of Taste and Odor Compounds in Surface Water, Overlying Water and Sediment of the Western Lake Chaohu, China}, - author = {Jiang, Yan and Cheng, Bo and Liu, Muxing and Nie, Yan}, - year = 2015, - journal = {Bulletin of Environmental Contamination and Toxicology}, - publisher = {Springer Science and Business Media LLC}, - volume = 96, - pages = {186–191}, - url = {http://dx.doi.org/10.1007/s00128-015-1698-y}, - issn = {1432-0800}, - doi = {10.1007/s00128-015-1698-y}, - number = 2} - -@Article{ning2021picophytoplankton, - title = {Picophytoplankton identification by flow cytometry and high-throughput sequencing in a clean reservoir}, - author = {Ning, Man and Li, Huimin and Xu, Zheng and Chen, Lei and He, Yiliang}, - year = 2021, - journal = {Ecotoxicology and Environmental Safety}, - publisher = {Elsevier BV}, - volume = 216, - pages = 112216, - url = {http://dx.doi.org/10.1016/j.ecoenv.2021.112216}, - issn = {0147-6513}, - doi = {10.1016/j.ecoenv.2021.112216} -} - -@article{zan2021variation, - author = {Zan, Shuaijun and Tao, Yi}, - title = {Variation and Olfactory Characteristics of {{\textit{Pseudanabaena}}} sp. in Shenzhen Reservoir}, - journal = {Journal Name}, - year = {2021}, - note = {Shenzhen Key Laboratory of Environmental Microbial Utilization and Safety Control, Shenzhen International Graduate School, Tsinghua University}, - url = {https://www.hkmu.edu.hk/wp-content/uploads/sites/70/2023/08/Zan-Shuaijun.pdf} -} - -@mastersthesis{ariturk2021removal, - author = {Ariturk, Esat}, - title = {Removal of 2-Methylisoborneol (MIB) and Geosmin with Powdered Activated Carbon Produced from Soybean Hulls}, - school = {Clemson University}, - year = {2021}, - month = {May}, - type = {Master of Science in Environmental Engineering and Science}, - url = {https://www.proquest.com/openview/cd49a2ebf92420af847bd08eca544d0f/1?pq-origsite=gscholar&cbl=18750&diss=y}, - note = {Accepted by: Dr. Tanju Karanfil, Committee Chair; Dr. Cindy Lee; Dr. David Ladner; Dr. Srikanth Pilla} -} -@Article{huang2018a, - title = {A Century-Long Ex-Post Evaluation of a Countermeasure for a Serious Pollution Problem in Japan}, - author = {Huang, Guangwei and Fu, Yiqi and Xue, Han and Li, Huibin}, - year = 2018, - journal = {Sustainability}, - publisher = {MDPI AG}, - volume = 10, - pages = 4385, - url = {http://dx.doi.org/10.3390/su10124385}, - issn = {2071-1050}, - doi = {10.3390/su10124385}, - number = 12} - -@Article{xu2022moderate, - title = {Moderate pre-ozonation coupled with a post-peroxone process remove filamentous cyanobacteria and 2-MIB efficiently: From bench to pilot-scale study}, - author = {Xu, Hangzhou and Zhang, Jing and Wang, Wenjuan and Li, Yizhen and Pei, Haiyan}, - year = 2022, - journal = {Journal of Hazardous Materials}, - publisher = {Elsevier BV}, - volume = 424, - pages = 127530, - url = {http://dx.doi.org/10.1016/j.jhazmat.2021.127530}, - issn = {0304-3894}, - doi = {10.1016/j.jhazmat.2021.127530} -} - -@Article{manganelli2023cooccurrence, - title = {Co-Occurrence of Taste and Odor Compounds and Cyanotoxins in Cyanobacterial Blooms: Emerging Risks to Human Health?}, - author = {Manganelli, Maura and Testai, Emanuela and Tazart, Zakaria and Scardala, Simona and Codd, Geoffrey A.}, - year = 2023, - journal = {Microorganisms}, - publisher = {MDPI AG}, - volume = 11, - pages = 872, - url = {http://dx.doi.org/10.3390/microorganisms11040872}, - issn = {2076-2607}, - doi = {10.3390/microorganisms11040872}, - number = 4} - -@Article{abbaszadegan2015stimulation, - title = {Stimulation of 2-methylisoborneol (MIB) production by actinomycetes after cyclic chlorination in drinking water distribution systems}, - author = {Abbaszadegan, Morteza and Yi, Min and Alum, Absar}, - year = 2015, - journal = {Journal of Environmental Science and Health, Part A}, - publisher = {Informa UK Limited}, - volume = 50, - pages = {365–371}, - url = {http://dx.doi.org/10.1080/10934529.2015.987526}, - issn = {1532-4117}, - doi = {10.1080/10934529.2015.987526}, - number = 4} - -@Article{zhang2024maintenance, - title = {Maintenance of cell integrity during hydroxyl radical rapid inactivation of {{\textit{Pseudanabaena}}} sp. and simultaneous mineralization of odor compound 2-methylisoborneol}, - author = {Zhang, Yubo and Jie, Ying and Li, Jianlan and Yu, Yixuan and Liang, Pengyu and Hao, Yiming and Bai, Mindong}, - year = 2024, - journal = {Science of The Total Environment}, - publisher = {Elsevier BV}, - volume = 912, - pages = 168713, - url = {http://dx.doi.org/10.1016/j.scitotenv.2023.168713}, - issn = {0048-9697}, - doi = {10.1016/j.scitotenv.2023.168713} -} - -@article{huddleston2015adaptive, - author = {Huddleston, Matt and Rodgers, John H., Jr. and Wardlaw, Kayla and Geer, Tyler and Calomeni, Alyssa and Willett, Scott and Barrington, Jennifer and Melton, David and Chastain, John and Bowen, Martin and Spacil, Mike}, - title = {Adaptive Water Resource Management for Taste and Odor Control for the Anderson Regional Joint Water System}, - journal = {South Carolina American Water Works Association and Water Environment Association of South Carolina}, - year = {2015} -} - -@Article{wang2023process, - title = {Process optimization and mechanism revealing of KMnO4 pre-oxidation coupled powdered activated carbon adsorption for 2-MIB removal}, - author = {Wang, Jiaxin and Zhou, Li and Gao, Jingsi and Zhu, Jia and Zhou, Jianfeng}, - year = 2023, - journal = {Journal of Water Process Engineering}, - publisher = {Elsevier BV}, - volume = 53, - pages = 103705, - url = {http://dx.doi.org/10.1016/j.jwpe.2023.103705}, - issn = {2214-7144}, - doi = {10.1016/j.jwpe.2023.103705} -} - -@Article{doederer2019effective, - title = {Effective removal of MIB and geosmin using MBBR for drinking water treatment}, - author = {Doederer, Katrin and Gale, Deb and Keller, Jurg}, - year = 2019, - journal = {Water Research}, - publisher = {Elsevier BV}, - volume = 149, - pages = {440–447}, - url = {http://dx.doi.org/10.1016/j.watres.2018.11.034}, - issn = {0043-1354}, - doi = {10.1016/j.watres.2018.11.034} -} - -@Article{qi2020characterization, - title = {Characterization of odorants in contrasting ecotypes of Lake Taihu: algae-dominated versus macrophyte-dominated zones}, - author = {Qi, Chuang and Fang, Jiaqi and Wang, Guoxiang and Huang, Hexiao and Wang, Zhuosen and Si, Zejun and Zhang, Limin}, - year = 2020, - journal = {Environmental Science and Pollution Research}, - publisher = {Springer Science and Business Media LLC}, - volume = 27, - pages = {42221–42229}, - url = {http://dx.doi.org/10.1007/s11356-020-07896-0}, - issn = {1614-7499}, - doi = {10.1007/s11356-020-07896-0}, - number = 34} - - -@article{whangchai2017study, - author = {Whangchai, Niwooti and Pimpimon, Tipsukon and Sompong, Udomlak and Suwanpakdee, Supannee and Gutierrez, Redel and Itayama, Tomoaki}, - title = {Study of Geosmin and 2-Methylisoborneol (MIB) Producers in Phayao Lake, Thailand}, - journal = {International Journal of Bioscience, Biochemistry and Bioinformatics}, - year = {2017}, - volume = {7}, - number = {3}, - pages = {177-184}, - doi = {10.17706/ijbbb.2017.7.2.177-184}, - corresponding_author = {Niwooti Whangchai}, - contact_information = {Tel.: 66 869166825; email: niwooti@hotmail.co.th}, - manuscript_submitted = {November 20, 2016}, - accepted_date = {March 7, 2017}, -} - -@article{youn2019characteristics, - title = {Characteristics of Cyanobacteria and Odorous Compounds Production in Lake Uiam and Lower Gonji Stream}, - author = {Seok Jea Youn and Jong Kwon Im and Myeong-Seop Byeon and Soon Ju Yu}, - journal = {Journal of Korean Society on Water Environment}, - volume = {35}, - number = {2}, - pages = {99-104}, - year = {2019}, - issn = {2289-0971}, - eissn = {2289-098X}, - month = {March}, - note = {Received: 26 November 2018, Revised: 30 January 2019, Accepted: 08 February 2019}, - doi = {10.15681/KSWE.2019.35.2.99} -} - -@Article{you2022multiclass, - title = {Multi-class secondary metabolites in cyanobacterial blooms from a tropical water body: Distribution patterns and real-time prediction}, - author = {You, Luhua and Tong, Xuneng and Te, Shu Harn and Tran, Ngoc Han and bte Sukarji, Nur Hanisah and He, Yiliang and Gin, Karina Yew-Hoong}, - year = 2022, - journal = {Water Research}, - publisher = {Elsevier BV}, - volume = 212, - pages = 118129, - url = {http://dx.doi.org/10.1016/j.watres.2022.118129}, - issn = {0043-1354}, - doi = {10.1016/j.watres.2022.118129} -} - -@Article{zhang2010biological, - title = {Biological origins and annual variations of earthy-musty off-flavours in the Xionghe Reservoir in China}, - author = {Zhang, Ting and Li, Lin and Zuo, Yanxia and Zhou, Quan and Song, Lirong}, - year = 2010, - journal = {Journal of Water Supply: Research and Technology-Aqua}, - publisher = {IWA Publishing}, - volume = 59, - pages = {243–254}, - url = {http://dx.doi.org/10.2166/aqua.2010.019}, - issn = {1605-3974}, - doi = {10.2166/aqua.2010.019}, - number = 4} - -@Article{cohen2021community, - title = {Community and single cell analyses reveal complex predatory interactions between bacteria in high diversity systems}, - author = {Cohen, Yossi and Pasternak, Zohar and Müller, Susann and Hübschmann, Thomas and Schattenberg, Florian and Sivakala, Kunjukrishnan Kamalakshi and Abed-Rabbo, Alfred and Chatzinotas, Antonis and Jurkevitch, Edouard}, - year = 2021, - journal = {Nature Communications}, - publisher = {Springer Science and Business Media LLC}, - volume = 12, - url = {http://dx.doi.org/10.1038/s41467-021-25824-9}, - issn = {2041-1723}, - doi = {10.1038/s41467-021-25824-9}, - number = 1 -} - -@Article{huangea2021effects, - title = {Effects of climate change on metabolite accumulation in freshwater and marine cyanobacteria}, - volume = {2}, - issn = {2666-9005}, - url = {http://dx.doi.org/10.1016/j.ecochg.2021.100018}, - doi = {10.1016/j.ecochg.2021.100018}, - journal = {Climate Change Ecology}, - publisher = {Elsevier BV}, - author = {Huang, I-Shuo and Hu, Xinping and Abdulla, Hussain and - Zimba, Paul V.}, - year = {2021}, - month = dec, - pages = {100018} -} - -@Article{zhu2012taxonomic, - title = {Taxonomic and phylogenetic evaluation of {{\textit{Limnothrix}}} strains (Oscillatoriales, Cyanobacteria) by adding {{\textit{Limnothrix planktonica}}} strains isolated from central China}, - volume = {698}, - issn = {1573-5117}, - url = {http://dx.doi.org/10.1007/s10750-012-1127-8}, - doi = {10.1007/s10750-012-1127-8}, - number = {1}, - journal = {Hydrobiologia}, - publisher = {Springer Science and Business Media LLC}, - author = {Zhu, Mengling and Yu, Gongliang and Li, Xiaochuang and Tan, Wenhua and Li, Renhui}, - year = {2012}, - month = may, - pages = {367–374} -} - -@Article{zhangea2022geochemical, - title = {Geochemical records of Lake Erhai (South-Western China) reveal the anthropogenically-induced intensification of hypolimnetic anoxia in monomictic lakes}, - volume = {299}, - issn = {0269-7491}, - url = {http://dx.doi.org/10.1016/j.envpol.2022.118909}, - doi = {10.1016/j.envpol.2022.118909}, - journal = {Environmental Pollution}, - publisher = {Elsevier BV}, - author = {Zhang, Yongdong and Fu, Huan and Liao, Hanliang and Chen, Huihui and Liu, Zhengwen}, - year = {2022}, - month = apr, - pages = {118909} -} - -@Article{safferman1967earthysmelling, - title = {Earthy-smelling substance from a blue-green alga}, - author = {Safferman, R. S. and Rosen, A. A. and Mashni, C. I. and Morris, M. E.}, - year = 1967, - journal = {Environmental Science \& Technology}, - volume = 1, - pages = {429--430}, - url = { - https://doi.org/10.1021/es60005a009 - }, - number = 5, - doi = {10.1021/es60005a009}, - note = {PMID: 22148491}, - eprint = { - https://doi.org/10.1021/es60005a009 - } -} - -@Article{garbeva2023volatile, - title = {Volatile sensation: The chemical ecology of the earthy odorant geosmin}, - author = {Garbeva, Paolina and Avalos, Mariana and Ulanova, Dana and van Wezel, Gilles P. and Dickschat, Jeroen S.}, - year = 2023, - journal = {Environmental Microbiology}, - publisher = {Wiley}, - volume = 25, - pages = {1565–1574}, - url = {http://dx.doi.org/10.1111/1462-2920.16381}, - issn = {1462-2920}, - doi = {10.1111/1462-2920.16381}, - number = 9} - - -@article{yuan2007miyun, - author = {原媛 and 汪善全 and 竺建荣 and 樊康平 and 顾军农 and 张春雷}, - title = {密云水库微生物相变化对水质及嗅味的影响}, - journal = {环境科学研究}, - volume = {20}, - number = {06}, - pages = {8-13}, - year = {2007}, - issn = {1001-6929}, - doi ={10.13198/j.res.2007.06.11.yuany.002} - } - -@Article{wang2023unraveling, - title = {Unraveling the source-water fishy odor occurrence during low-temperature periods: Odorants identification, typical algae species and odor-producing potential}, - volume = {905}, - issn = {0048-9697}, - url = {http://dx.doi.org/10.1016/j.scitotenv.2023.166998}, - doi = {10.1016/j.scitotenv.2023.166998}, - journal = {Science of The Total Environment}, - publisher = {Elsevier BV}, - author = {Wang, Chunmiao and Liu, Tingting and Jia, Zeyu and Su, Ming and Dong, Yunxing and Guo, Qingyuan and Yang, Min and Yu, Jianwei}, - year = {2023}, - month = dec, - pages = {166998} -} - - -@Article{wang2021data, - title = {Data Analytics Determines Co-occurrence of Odorants in Raw Water and Evaluates Drinking Water Treatment Removal Strategies}, - volume = {55}, - issn = {1520-5851}, - url = {http://dx.doi.org/10.1021/acs.est.1c02129}, - doi = {10.1021/acs.est.1c02129}, - number = {24}, - journal = {Environmental Science \& Technology}, - publisher = {American Chemical Society (ACS)}, - author = {Wang, Chunmiao and Gallagher, Daniel L. and Dietrich, Andrea M. and Su, Ming and Wang, Qi and Guo, Qingyuan and Zhang, Junzhi and An, Wei and Yu, Jianwei and Yang, Min}, - year = {2021}, - month = dec, - pages = {16770–16782} -} - - -@Article{xiao2014guang, - title = {光强对微囊藻群体形态的影响及其生理机制研究}, - journal = {水生生物学报}, - volume = {38}, - number = {1}, - pages = {35-42}, - year = {2014}, - issn = {1000-3207}, - doi = {10.7541/2014.05}, - url = {http://ssswxb.ihb.ac.cn/cn/article/doi/10.7541/2014.05}, - author = {肖艳 and 甘南琴 and 郑凌凌 and 宋立荣} -} - -@Article{chen2022the, - title = {寡—中营养型水体偶发性蓝藻水华的驱动因素分析——以南京方便水库为例}, - journal = {湖泊科学}, - volumne = {34}, - number = {5}, - pages = {1452-1460}, - year = {2022}, - doi = {10.18307/2022.0504}, - author = {陈文权 and 孟洋洋 and 单延功 and 李香华 and 王炜 and 张民} -} - -@Article{chen2023fu, - title = {浮游植物优势属演替和丝状蓝藻增殖的驱动因子研究——以千岛湖为例}, - journal = {水生生物学报}, - volume = {47}, - number = {12}, - pages = {1877-1888}, - year = {2023}, - issn = {1000-3207}, - doi = {10.7541/2023.2023.0089}, - url = {http://ssswxb.ihb.ac.cn/cn/article/doi/10.7541/2023.2023.0089}, - author = {陈玉茹 and 刘佳睿 and 郑文婷 and 岳智颖 and 沈宏 and 程新良 and 吴志旭 and 谢平} -} - -@Article{wei2023nan, - title = {南水北调东线山东境内调蓄湖库蓝藻种群分布特征及环境驱动因子}, - journal = {环境科学}, - volume = {44}, - number = {11}, - pages = {6137-6148}, - year = {2023}, - url = {https://www.hjkx.ac.cn/hjkx/ch/html/20231125.htm}, - author = {韦洁琳 and 崔玉静 and 李亦真 and 张莎莎 and 徐杭州 and 庞一鸣 and 裴海燕} -} - -@mastersthesis{li2021si, - author = {李亦真}, - title = {丝状蓝藻在北方水库型水源地的种群结构和环境驱动因子}, - school = {山东大学}, - year = {2021} -} - -@inproceedings{andersen1997pelagic, - title={Pelagic Nutrient Cycles}, - author={Tom Andersen}, - booktitle={Ecological Studies}, - year={1997}, - url={https://api.semanticscholar.org/CorpusID:26359872} -} - -@article{han2010zhongguo, - author = {韩博平}, - title = {中国水库生态学研究的回顾与展望}, - journal = {湖泊科学}, - volume = {22}, - number = {02}, - pages = {151-160}, - year = {2010}, - issn = {1003-5427} -} - -@Article{walsby1994gas, - author = {A E Walsby}, - title = {Gas vesicles}, - journal = {Microbiological Reviews}, - volume = {58}, - number = {1}, - pages = {94-144}, - year = {1994}, - doi = {10.1128/mr.58.1.94-144.1994}, - url = {https://journals.asm.org/doi/abs/10.1128/mr.58.1.94-144.1994}, - eprint = {https://journals.asm.org/doi/pdf/10.1128/mr.58.1.94-144.1994} -} - -@report{holcomb2022strategies, - author = {Holcomb, Ben and Stanton, Beckye and Baysinger, Cherri and Bouma-Gregson, Keith and Briland, Ruth and Fickas, Kate and Rice, Nancy and Shambaugh, Angela and Spoo-Chupka, Margaret and St. Amand, Ann and Wood, D'yani and Geraci, Jeff and Yee, Caroyln and Fadness, Rich and Thomas, Michael and Anderson-Abbs, Beverley and Erickson, Sarah and Lizotte, Tracy and Main, Christopher and Zucker, Robert}, - year = {2022}, - month = {03}, - pages = {1--288}, - title = {Strategies for Preventing and Managing Benthic Harmful Cyanobacterial Blooms Technical/Regulatory Guidance}, - doi = {10.13140/RG.2.2.17078.78404} -} - -@Article{rodriguezladoea2013groundwater, - title = {Groundwater Arsenic Contamination Throughout China}, - volume = {341}, - issn = {1095-9203}, - url = {http://dx.doi.org/10.1126/science.1237484}, - doi = {10.1126/science.1237484}, - number = {6148}, - journal = {Science}, - publisher = {American Association for the Advancement of Science (AAAS)}, - author = {Rodríguez-Lado, Luis and Sun, Guifan and Berg, Michael and Zhang, Qiang and Xue, Hanbin and Zheng, Quanmei and Johnson, C. Annette}, - year = {2013}, - pages = {866–868} -} - -@Article{izaguirreea1982geosmin, - title = {Geosmin and 2-Methylisoborneol from Cyanobacteria in Three Water Supply Systems}, - volume = {43}, - issn = {1098-5336}, - url = {http://dx.doi.org/10.1128/aem.43.3.708-714.1982}, - doi = {10.1128/aem.43.3.708-714.1982}, - number = {3}, - journal = {Applied and Environmental Microbiology}, - publisher = {American Society for Microbiology}, - author = {Izaguirre, George and Hwang, Cordelia J. and Krasner, Stuart W. and McGuire, Michael J.}, - year = {1982}, - pages = {708–714} -} - -@Article{breemenea1992production, - title = {Production and Reduction of Geosmin and 2-Methylisoborneol During Storage of River Water in Deep Reservoirs}, - volume = {25}, - issn = {1996-9732}, - url = {http://dx.doi.org/10.2166/wst.1992.0057}, - doi = {10.2166/wst.1992.0057}, - number = {2}, - journal = {Water Science and Technology}, - publisher = {IWA Publishing}, - author = {van Breemen, L. W. C. A. and Dits, J. S. and Ketelaars, H. A. M.}, - year = {1992}, - pages = {233–240} -} - -@article{qin2023chang, - author = {秦伯强 and 吴海斌}, - title = {长江流域湖泊富营养化发展趋势与展望}, - journal = {人民长江}, - volume = {54}, - number = {10}, - pages = {18-23}, - year = {2023}, - issn = {1001-4179}, - doi ={10.16232/j.cnki.1001-4179.2023.10.003} -} - -@book{yang2021yin, - author = {杨敏 and 于建伟 and 苏命 and 郭庆园}, - isbn = {9787030677112}, - title = {饮用水嗅味问题：来源与控制饮用水嗅味问题}, - publisher = {科学出版社}, - year = {2021} -} - - - -@InBook{schaefer1970the, - title = {The Responses of Cyanobacteria to Environmental Conditions: Light and Nutrients}, - author = {Schaefer, Michael and Chiang, Gisela and Collier, Jackie}, - year = 1970, - journal = {The Molecular Biology of Cyanobacteria}, - pages = {641--675}, - isbn = {0-7923-3222-9}, - doi = {10.1007/0-306-48205-3_21} -} - -@Article{pfeifer2012distribution, - title = {Distribution, formation and regulation of gas vesicles}, - author = {Pfeifer, Felicitas}, - year = 2012, - journal = {Nature Reviews Microbiology}, - publisher = {Springer Science and Business Media LLC}, - volume = 10, - pages = {705–715}, - url = {http://dx.doi.org/10.1038/nrmicro2834}, - issn = {1740-1534}, - doi = {10.1038/nrmicro2834}, - number = 10} - -@Article{moore2020mechanical, - title = {Mechanical regulation of photosynthesis in cyanobacteria}, - author = {Moore, Kristin A. and Altus, Sabina and Tay, Jian W. and Meehl, Janet B. and Johnson, Evan B. and Bortz, David M. and Cameron, Jeffrey C.}, - year = 2020, - journal = {Nature Microbiology}, - publisher = {Springer Science and Business Media LLC}, - volume = 5, - pages = {757–767}, - url = {http://dx.doi.org/10.1038/s41564-020-0684-2}, - issn = {2058-5276}, - doi = {10.1038/s41564-020-0684-2}, - number = 5} - -@Article{zeng2022the, - title = {The Making of a Heterocyst in Cyanobacteria}, - author = {Zeng, Xiaoli and Zhang, Cheng-Cai}, - year = 2022, - journal = {Annual Review of Microbiology}, - publisher = {Annual Reviews}, - volume = 76, - pages = {597–618}, - url = {http://dx.doi.org/10.1146/annurev-micro-041320-093442}, - issn = {1545-3251}, - doi = {10.1146/annurev-micro-041320-093442}, - number = 1} - -@Article{qiu2023producers, - title = {Producers and drivers of odor compounds in a large drinking-water source}, - author = {Qiu, Pengfei and Zhang, Yuheng and Mi, Wujuan and Song, Gaofei and Bi, Yonghong}, - year = 2023, - journal = {Frontiers in Ecology and Evolution}, - publisher = {Frontiers Media SA}, - volume = 11, - url = {http://dx.doi.org/10.3389/fevo.2023.1216567}, - issn = {2296-701X}, - doi = {10.3389/fevo.2023.1216567} -} - -@article{huang2017yang, - author = {黄廷林 and 朱倩 and 邱晓鹏 and 史建超 and 周石磊 and 曾明正}, - title = {扬水曝气技术对周村水库藻类的控制}, - journal = {环境工程学报}, - volume = {11}, - number = {04}, - pages = {2255-2260}, - year = {2017}, - issn = {1673-9108} -} - -@Article{hammond2023highfrequency, - title = {High-frequency sensor data capture short-term variability in Fe and Mn concentrations due to hypolimnetic oxygenation and seasonal dynamics in a drinking water reservoir}, - author = {Hammond, Nicholas W. and Birgand, François and Carey, Cayelan C. and Bookout, Bethany and Breef-Pilz, Adrienne and Schreiber, Madeline E.}, - year = 2023, - journal = {Water Research}, - publisher = {Elsevier BV}, - volume = 240, - pages = 120084, - url = {http://dx.doi.org/10.1016/j.watres.2023.120084}, - issn = {0043-1354}, - doi = {10.1016/j.watres.2023.120084} -} - -@Article{munger2016effectiveness, - title = {Effectiveness of hypolimnetic oxygenation for preventing accumulation of Fe and Mn in a drinking water reservoir}, - author = {Munger, Zackary W. and Carey, Cayelan C. and Gerling, Alexandra B. and Hamre, Kathleen D. and Doubek, Jonathan P. and Klepatzki, Spencer D. and McClure, Ryan P. and Schreiber, Madeline E.}, - year = 2016, - journal = {Water Research}, - publisher = {Elsevier BV}, - volume = 106, - pages = {1–14}, - url = {http://dx.doi.org/10.1016/j.watres.2016.09.038}, - issn = {0043-1354}, - doi = {10.1016/j.watres.2016.09.038} -} - -@Article{gächter1988contribution, - title = {Contribution of bacteria to release and fixation of phosphorus in lake sediments}, - author = {Gächter, René and Meyer, Joseph S. and Mares, Antonin}, - year = 1988, - journal = {Limnology and Oceanography}, - publisher = {Wiley}, - volume = 33, - pages = {1542–1558}, - url = {http://dx.doi.org/10.4319/lo.1988.33.6part2.1542}, - issn = {1939-5590}, - doi = {10.4319/lo.1988.33.6part2.1542}, - number = {6part2} -} - -@Article{santanacasiano2006the, - title = {The role of Fe(II) species on the oxidation of Fe(II) in natural waters in the presence of O2 and H2O2}, - author = {Santana-Casiano, J.M. and González-Dávila, M. and Millero, F.J.}, - year = 2006, - journal = {Marine Chemistry}, - publisher = {Elsevier BV}, - volume = 99, - pages = {70–82}, - url = {http://dx.doi.org/10.1016/j.marchem.2005.03.010}, - issn = {0304-4203}, - doi = {10.1016/j.marchem.2005.03.010}, - number = {1–4} -} - -@Article{king1998role, - title = {Role of Carbonate Speciation on the Oxidation Rate of Fe(II) in Aquatic Systems}, - author = {King, D. Whitney}, - year = 1998, - journal = {Environmental Science \& Technology}, - publisher = {American Chemical Society (ACS)}, - volume = 32, - pages = {2997–3003}, - url = {http://dx.doi.org/10.1021/es980206o}, - issn = {1520-5851}, - doi = {10.1021/es980206o}, - number = 19 -} - -@Article{wang2015transformation, - title = {Transformation of Tetracycline Antibiotics and Fe(II) and Fe(III) Species Induced by Their Complexation}, - author = {Wang, Hui and Yao, Hong and Sun, Peizhe and Li, Desheng and Huang, Ching-Hua}, - year = 2015, - journal = {Environmental Science \& Technology}, - publisher = {American Chemical Society (ACS)}, - volume = 50, - pages = {145–153}, - url = {http://dx.doi.org/10.1021/acs.est.5b03696}, - issn = {1520-5851}, - doi = {10.1021/acs.est.5b03696}, - number = 1 -} - -@Article{xie2020contaminant, - title = {Contaminant Degradation by •OH during Sediment Oxygenation: Dependence on Fe(II) Species}, - author = {Xie, Wenjing and Yuan, Songhu and Tong, Man and Ma, Sicong and Liao, Wenjuan and Zhang, Na and Chen, Chunmei}, - year = 2020, - journal = {Environmental Science \& Technology}, - publisher = {American Chemical Society (ACS)}, - volume = 54, - pages = {2975–2984}, - url = {http://dx.doi.org/10.1021/acs.est.9b04870}, - issn = {1520-5851}, - doi = {10.1021/acs.est.9b04870}, - number = 5 -} - -@article{millero1987oxidation, - title = {The oxidation kinetics of {Fe}({II}) in seawater}, - volume = {51}, - issn = {0016-7037}, - url = {https://www.sciencedirect.com/science/article/pii/0016703787900937}, - doi = {https://doi.org/10.1016/0016-7037(87)90093-7}, - number = {4}, - journal = {Geochimica et Cosmochimica Acta}, - author = {Millero, Frank J and Sotolongo, Sara and Izaguirre, Miguel}, - year = {1987}, - pages = {793--801}, -} - -@Article{yang2023atomiclevel, - title = {Atomic-Level Structural Differences between Fe(III) Coprecipitates Generated by the Addition of Fe(III) Coagulants and by the Oxidation of Fe(II) Coagulants Determine Their Coagulation Behavior in Phosphate and DOM Removal}, - author = {Yang, Bingqian and Graham, Nigel and Liu, Peng and Liu, Mengjie and Gregory, John and Yu, Wenzheng}, - year = 2023, - journal = {Environmental Science \& Technology}, - publisher = {American Chemical Society (ACS)}, - volume = 57, - pages = {12489–12500}, - url = {http://dx.doi.org/10.1021/acs.est.3c03463}, - issn = {1520-5851}, - doi = {10.1021/acs.est.3c03463}, - number = 33 -} - -@Article{li2019enhanced, - title = {Enhanced Production of in Situ Keggin Al137+ Polymer by a Combined Fe-Al Coagulation Process for the Treatment of High Alkalinity Water}, - author = {Li, Ning and Hu, Chengzhi and Lan, Huachun and Liu, Ruiping and Liu, Huijuan and Qu, Jiuhui}, - year = 2019, - journal = {ACS Sustainable Chemistry \& Engineering}, - publisher = {American Chemical Society (ACS)}, - volume = 7, - pages = {9544–9552}, - url = {http://dx.doi.org/10.1021/acssuschemeng.9b01040}, - issn = {2168-0485}, - doi = {10.1021/acssuschemeng.9b01040}, - number = 10 -} - -@Article{guo2023fate, - title = {Fate of Coronaviruses during the Wastewater Coagulation with Ferric Chloride}, - author = {Guo, Ying and Shi, Jiahua and Sharma, Elipsha and Gao, Shuhong and Zhou, Xu and Liu, Yanchen and Sivakumar, Muttucumaru and Jiang, Guangming}, - year = 2023, - journal = {ACS ES\&T Water}, - publisher = {American Chemical Society (ACS)}, - volume = 3, - pages = {3206–3214}, - url = {http://dx.doi.org/10.1021/acsestwater.3c00112}, - issn = {2690-0637}, - doi = {10.1021/acsestwater.3c00112}, - number = 10 -} - -@Article{davis2017role, - title = {Role of Calcium in the Coagulation of NOM with Ferric Chloride}, - author = {Davis, Christina C. and Edwards, Marc}, - year = 2017, - journal = {Environmental Science \& Technology}, - publisher = {American Chemical Society (ACS)}, - volume = 51, - pages = {11652–11659}, - url = {http://dx.doi.org/10.1021/acs.est.7b02038}, - issn = {1520-5851}, - doi = {10.1021/acs.est.7b02038}, - number = 20 -} - -@Article{ma2014mnviifeii, - title = {Mn(VII)–Fe(II) pre-treatment for {{\textit{Microcystis aeruginosa}}} removal by Al coagulation: Simultaneous enhanced cyanobacterium removal and residual coagulant control}, - author = {Ma, Min and Liu, Ruiping and Liu, Huijuan and Qu, Jiuhui}, - year = 2014, - journal = {Water Research}, - publisher = {Elsevier BV}, - volume = 65, - pages = {73–84}, - url = {http://dx.doi.org/10.1016/j.watres.2014.07.011}, - issn = {0043-1354}, - doi = {10.1016/j.watres.2014.07.011} -} - -@Article{gessner2002influence, - title = {Influence of surface charge density on protein adsorption on polymeric nanoparticles: analysis by two-dimensional electrophoresis}, - volume = {54}, - issn = {0939-6411}, - url = {https://www.sciencedirect.com/science/article/pii/S0939641102000814}, - doi = {https://doi.org/10.1016/S0939-6411(02)00081-4}, - number = {2}, - journal = {European Journal of Pharmaceutics and Biopharmaceutics}, - author = {Gessner, Andrea and Lieske, Antje and Paulke, Bernd R and Müller, Rainer H}, - year = {2002}, - keywords = {Colloidal drug carriers, Nanoparticles, Protein adsorption, Surface charge density, Two-dimensional electrophoresis}, - pages = {165--170}, -} - -@Article{schroeder1996aquatic, - title = {Aquatic Chemistry, Third Edition}, - author = {Schroeder, Edward D. and Young, Thomas M.}, - year = 1996, - journal = {Eos, Transactions American Geophysical Union}, - publisher = {American Geophysical Union (AGU)}, - volume = 77, - pages = {284–284}, - url = {http://dx.doi.org/10.1029/96EO00205}, - issn = {2324-9250}, - doi = {10.1029/96eo00205}, - number = 30 -} - -@Article{mhashhash2017effect, - title = {Effect of hydrodynamics factors on sediment flocculation processes in estuaries}, - author = {Mhashhash, Aisha and Bockelmann-Evans, Bettina and Pan, Shunqi}, - year = 2017, - journal = {Journal of Soils and Sediments}, - publisher = {Springer Science and Business Media LLC}, - volume = 18, - pages = {3094–3103}, - url = {http://dx.doi.org/10.1007/s11368-017-1837-7}, - issn = {1614-7480}, - doi = {10.1007/s11368-017-1837-7}, - number = 10 -} - -@Article{heo2004the, - title = {The Effect of Artificial Destratification on Phytoplankton in a Reservoir}, - author = {Heo, Woo-Myung and Kim, Bomchul}, - year = 2004, - journal = {Hydrobiologia}, - publisher = {Springer Science and Business Media LLC}, - volume = 524, - pages = {229–239}, - url = {http://dx.doi.org/10.1023/B:HYDR.0000036142.74589.a4}, - issn = {0018-8158}, - doi = {10.1023/b:hydr.0000036142.74589.a4}, - number = 1 -} - -@Article{lehman2014understanding, - title = {Understanding the role of induced mixing for management of nuisance algal blooms in an urbanized reservoir}, - author = {Lehman, John T.}, - year = 2014, - journal = {Lake and Reservoir Management}, - publisher = {Informa UK Limited}, - volume = 30, - pages = {63–71}, - url = {http://dx.doi.org/10.1080/10402381.2013.872739}, - issn = {2151-5530}, - doi = {10.1080/10402381.2013.872739}, - number = 1 -} - -@Article{klumb2004establishment, - title = {ESTABLISHMENT OF A METALIMNETIC OXYGEN REFUGE FOR ZOOPLANKTON IN A PRODUCTIVE LAKE ONTARIO EMBAYMENT}, - author = {Klumb, Robert A. and Bunch, Kietha L. and Mills, Edward L. and Rudstam, Lars G. and Brown, Gary and Knauf, Charles and Burton, Richard and Arrhenius, Fredrik}, - year = 2004, - journal = {Ecological Applications}, - publisher = {Wiley}, - volume = 14, - pages = {113–131}, - url = {http://dx.doi.org/10.1890/02-5054}, - issn = {1051-0761}, - doi = {10.1890/02-5054}, - number = 1 -} - -@Article{beutel2006inhibition, - title = {Inhibition of ammonia release from anoxic profundal sediments in lakes using hypolimnetic oxygenation}, - author = {Beutel, Marc W.}, - year = 2006, - journal = {Ecological Engineering}, - publisher = {Elsevier BV}, - volume = 28, - pages = {271–279}, - url = {http://dx.doi.org/10.1016/j.ecoleng.2006.05.009}, - issn = {0925-8574}, - doi = {10.1016/j.ecoleng.2006.05.009}, - number = 3 -} - -@Article{lai2018a, - title = {A review on sediment bioflocculation: Dynamics, influencing factors and modeling}, - author = {Lai, Haojie and Fang, Hongwei and Huang, Lei and He, Guojian and Reible, Danny}, - year = 2018, - journal = {Science of The Total Environment}, - publisher = {Elsevier BV}, - volume = 642, - pages = {1184–1200}, - url = {http://dx.doi.org/10.1016/j.scitotenv.2018.06.101}, - issn = {0048-9697}, - doi = {10.1016/j.scitotenv.2018.06.101} -} - -@Article{safarikova2013influence, - title = {Influence of peptides and proteins produced by cyanobacterium {{\textit{Microcystis aeruginosa}}} on the coagulation of turbid waters}, - author = {Safarikova, Jana and Baresova, Magdalena and Pivokonsky, Martin and Kopecka, Ivana}, - year = 2013, - journal = {Separation and Purification Technology}, - publisher = {Elsevier BV}, - volume = 118, - pages = {49–57}, - url = {http://dx.doi.org/10.1016/j.seppur.2013.06.049}, - issn = {1383-5866}, - doi = {10.1016/j.seppur.2013.06.049} -} - -@Article{safarikova2013influence, - title = {Influence of peptides and proteins produced by cyanobacterium {{\textit{Microcystis aeruginosa}}} on the coagulation of turbid waters}, - author = {Safarikova, Jana and Baresova, Magdalena and Pivokonsky, Martin and Kopecka, Ivana}, - year = 2013, - journal = {Separation and Purification Technology}, - publisher = {Elsevier BV}, - volume = 118, - pages = {49–57}, - url = {http://dx.doi.org/10.1016/j.seppur.2013.06.049}, - issn = {1383-5866}, - doi = {10.1016/j.seppur.2013.06.049} -} - -@article{agrawal2012factors, - title = {Factors controlling induction of reproduction in algae{\textemdash}review: the text}, - author = {Agrawal, S. C.}, - year = {2012}, - month = {04}, - date = {2012-04-28}, - journal = {Folia Microbiologica}, - pages = {387--407}, - volume = {57}, - number = {5}, - doi = {10.1007/s12223-012-0147-0}, - url = {http://dx.doi.org/10.1007/s12223-012-0147-0}, - langid = {en} -} - -@article{lynch2015ecology, - title = {Ecology and exploration of the rare biosphere}, - author = {Lynch, Michael D. J. and Neufeld, Josh D.}, - year = {2015}, - month = {03}, - date = {2015-03-02}, - journal = {Nature Reviews Microbiology}, - pages = {217--229}, - volume = {13}, - number = {4}, - doi = {10.1038/nrmicro3400}, - url = {http://dx.doi.org/10.1038/nrmicro3400}, - langid = {en} -} - -@article{schmitt2016genome, - title = {Genome-wide mapping and analysis of chromosome architecture}, - author = {Schmitt, Anthony D. and Hu, Ming and Ren, Bing}, - year = {2016}, - month = {09}, - date = {2016-09-01}, - journal = {Nature Reviews Molecular Cell Biology}, - pages = {743--755}, - volume = {17}, - number = {12}, - doi = {10.1038/nrm.2016.104}, - url = {http://dx.doi.org/10.1038/nrm.2016.104}, - langid = {en} -} - -@article{cai2012spatial, - title = {Spatial heterogeneity of cyanobacterial communities and genetic variation of {{\textit{Microcystis}}} populations within large, shallow eutrophic lakes (Lake Taihu and Lake Chaohu, China)}, - author = {Cai, Yuanfeng and Kong, Fanxiang and Shi, Limei and Yu, Yang}, - year = {2012}, - month = {10}, - date = {2012-10}, - journal = {Journal of Environmental Sciences}, - pages = {1832--1842}, - volume = {24}, - number = {10}, - doi = {10.1016/s1001-0742(11)61007-3}, - url = {http://dx.doi.org/10.1016/S1001-0742(11)61007-3}, - langid = {en} -} -@Article{qi2024stress, - title = {Stress response of {{\textit{Microcystis aeruginosa}}} to chlorine during transportation: The significance of surface-adsorbed organic matter}, - author = {Qi, Jing and Jiang, Yuancheng and Ni, Rong and Wang, Xi and Hu, Chengzhi and Qu, Jiuhui}, - year = 2024, - journal = {Water Research}, - publisher = {Elsevier BV}, - volume = 255, - pages = 121468, - url = {http://dx.doi.org/10.1016/j.watres.2024.121468}, - issn = {0043-1354}, - doi = {10.1016/j.watres.2024.121468} -} - -@Book{bellinger2015freshwater, - title = {Freshwater Algae: Identification, enumeration and use as bioindicators: Second edition}, - author = {Bellinger, Edward and Sigee, David}, - year = 2015, - pages = {1--275}, - isbn = 9781118917169, - doi = {10.1002/9781118917152} -} - -@Article{heinrich2021transformation, - title = {Transformation of redox-sensitive to redox-stable iron-bound phosphorus in anoxic lake sediments under laboratory conditions}, - author = {Heinrich, Lena and Rothe, Matthias and Braun, Burga and Hupfer, Michael}, - year = 2021, - journal = {Water Research}, - publisher = {Elsevier BV}, - volume = 189, - pages = 116609, - url = {http://dx.doi.org/10.1016/j.watres.2020.116609}, - issn = {0043-1354}, - doi = {10.1016/j.watres.2020.116609} -} - -@Article{cavalcante2021control, - title = {Control of internal phosphorus loading using coagulants and clays in water and the sediment of a semiarid reservoir susceptible to resuspension}, - author = {Cavalcante, H. and Araújo, F. and Becker, V. and Lucena-Barbosa, J. E.}, - year = 2021, - journal = {Hydrobiologia}, - publisher = {Springer Science and Business Media LLC}, - volume = 849, - pages = {4059–4071}, - url = {http://dx.doi.org/10.1007/s10750-021-04737-0}, - issn = {1573-5117}, - doi = {10.1007/s10750-021-04737-0}, - number = {17–18} -} - -@Article{brock2013a, - title = {A Detailed View of 2‐Methylisoborneol Biosynthesis}, - author = {Brock, Nelson L. and Ravella, Srinivasa R. and Schulz, Stefan and Dickschat, Jeroen S.}, - year = 2013, - journal = {Angewandte Chemie International Edition}, - publisher = {Wiley}, - volume = 52, - pages = {2100–2104}, - url = {http://dx.doi.org/10.1002/anie.201209173}, - issn = {1521-3773}, - doi = {10.1002/anie.201209173}, - number = 7} - -@Article{koksal2012structure, - title = {Structure of 2-Methylisoborneol Synthase from Streptomyces coelicolor and Implications for the Cyclization of a Noncanonical C-Methylated Monoterpenoid Substrate}, - author = {Köksal, Mustafa and Chou, Wayne K. W. and Cane, David E. and Christianson, David W.}, - year = 2012, - journal = {Biochemistry}, - publisher = {American Chemical Society (ACS)}, - volume = 51, - pages = {3011–3020}, - url = {http://dx.doi.org/10.1021/bi201827a}, - issn = {1520-4995}, - doi = {10.1021/bi201827a}, - number = 14} - -@Article{chou2017incubation, - title = {Incubation of 2-methylisoborneol synthase with the intermediate analog 2-methylneryl diphosphate}, - author = {Chou, Wayne KW and Gould, Colin A and Cane, David E}, - year = 2017, - journal = {The Journal of Antibiotics}, - publisher = {Springer Science and Business Media LLC}, - volume = 70, - pages = {625–631}, - url = {http://dx.doi.org/10.1038/ja.2017.24}, - issn = {1881-1469}, - doi = {10.1038/ja.2017.24}, - number = 5} - -@Article{yamada2014terpene, - title = {Terpene synthases are widely distributed in bacteria}, - author = {Yamada, Yuuki and Kuzuyama, Tomohisa and Komatsu, Mamoru and Shin-ya, Kazuo and Omura, Satoshi and Cane, David E. and Ikeda, Haruo}, - year = 2014, - journal = {Proceedings of the National Academy of Sciences}, - publisher = {Proceedings of the National Academy of Sciences}, - volume = 112, - pages = {857–862}, - url = {http://dx.doi.org/10.1073/pnas.1422108112}, - issn = {1091-6490}, - doi = {10.1073/pnas.1422108112}, - number = 3} - -@Article{wang2010biochemistry, - title = {Biochemistry and Molecular Genetics of the Biosynthesis of the Earthy Odorant Methylisoborneol in Streptomyces coelicolor}, - author = {Wang, Chieh-Mei and Cane, David E.}, - year = 2010, - journal = {Journal of the American Chemical Society}, - publisher = {American Chemical Society (ACS)}, - volume = 132, - pages = {9509–9509}, - url = {http://dx.doi.org/10.1021/ja104306p}, - issn = {1520-5126}, - doi = {10.1021/ja104306p}, - number = 27} - -@Article{becher2020developmentally, - title = {Developmentally regulated volatiles geosmin and 2-methylisoborneol attract a soil arthropod to Streptomyces bacteria promoting spore dispersal}, - author = {Becher, Paul G. and Verschut, Vasiliki and Bibb, Maureen J. and Bush, Matthew J. and Molnár, Béla P. and Barane, Elisabeth and Al-Bassam, Mahmoud M. and Chandra, Govind and Song, Lijiang and Challis, Gregory L. and Buttner, Mark J. and Flärdh, Klas}, - year = 2020, - journal = {Nature Microbiology}, - publisher = {Springer Science and Business Media LLC}, - volume = 5, - pages = {821–829}, - url = {http://dx.doi.org/10.1038/s41564-020-0697-x}, - issn = {2058-5276}, - doi = {10.1038/s41564-020-0697-x}, - number = 6} - -@Article{larsson2021antibiotic, - title = {Antibiotic resistance in the environment}, - author = {Larsson, D. G. Joakim and Flach, Carl-Fredrik}, - year = 2021, - journal = {Nature Reviews Microbiology}, - publisher = {Springer Science and Business Media LLC}, - volume = 20, - pages = {257–269}, - url = {http://dx.doi.org/10.1038/s41579-021-00649-x}, - issn = {1740-1534}, - doi = {10.1038/s41579-021-00649-x}, - number = 5} - -@Article{schirrmeister2013evolution, - title = {Evolution of multicellularity coincided with increased diversification of cyanobacteria and the Great Oxidation Event}, - author = {Schirrmeister, Bettina E. and de Vos, Jurriaan M. and Antonelli, Alexandre and Bagheri, Homayoun C.}, - year = 2013, - journal = {Proceedings of the National Academy of Sciences}, - publisher = {Proceedings of the National Academy of Sciences}, - volume = 110, - pages = {1791–1796}, - url = {http://dx.doi.org/10.1073/pnas.1209927110}, - issn = {1091-6490}, - doi = {10.1073/pnas.1209927110}, - number = 5} - -@Article{tomitani2006the, - title = {The evolutionary diversification of cyanobacteria: Molecular–phylogenetic and paleontological perspectives}, - author = {Tomitani, Akiko and Knoll, Andrew H. and Cavanaugh, Colleen M. and Ohno, Terufumi}, - year = 2006, - journal = {Proceedings of the National Academy of Sciences}, - publisher = {Proceedings of the National Academy of Sciences}, - volume = 103, - pages = {5442–5447}, - url = {http://dx.doi.org/10.1073/pnas.0600999103}, - issn = {1091-6490}, - doi = {10.1073/pnas.0600999103}, - number = 14} - -@Article{singh2011determining, - title = {Determining cell shape: adaptive regulation of cyanobacterial cellular differentiation and morphology}, - author = {Singh, Shailendra P. and Montgomery, Beronda L.}, - year = 2011, - journal = {Trends in Microbiology}, - publisher = {Elsevier BV}, - volume = 19, - pages = {278–285}, - url = {http://dx.doi.org/10.1016/j.tim.2011.03.001}, - issn = {0966-842X}, - doi = {10.1016/j.tim.2011.03.001}, - number = 6} - -@Article{bekker2004dating, - title = {Dating the rise of atmospheric oxygen}, - author = {Bekker, A. and Holland, H. D. and Wang, P.-L. and Rumble, D. and Stein, H. J. and Hannah, J. L. and Coetzee, L. L. and Beukes, N. J.}, - year = 2004, - journal = {Nature}, - publisher = {Springer Science and Business Media LLC}, - volume = 427, - pages = {117–120}, - url = {http://dx.doi.org/10.1038/nature02260}, - issn = {1476-4687}, - doi = {10.1038/nature02260}, - number = 6970} - -@Article{larsson2011genome, - title = {Genome fluctuations in cyanobacteria reflect evolutionary, developmental and adaptive traits}, - author = {Larsson, John and Nylander, Johan AA and Bergman, Birgitta}, - year = 2011, - journal = {BMC Evolutionary Biology}, - publisher = {Springer Science and Business Media LLC}, - volume = 11, - url = {http://dx.doi.org/10.1186/1471-2148-11-187}, - issn = {1471-2148}, - doi = {10.1186/1471-2148-11-187}, - number = 1} - -@Article{foster2009molecular, - title = {Molecular and morphological characterization of cyanobacterial diversity in the stromatolites of Highborne Cay, Bahamas}, - author = {Foster, Jamie S and Green, Stefan J and Ahrendt, Steven R and Golubic, Stjepko and Reid, R Pamela and Hetherington, Kevin L and Bebout, Lee}, - year = 2009, - journal = {The ISME Journal}, - publisher = {Oxford University Press (OUP)}, - volume = 3, - pages = {573–587}, - url = {http://dx.doi.org/10.1038/ismej.2008.129}, - issn = {1751-7370}, - doi = {10.1038/ismej.2008.129}, - number = 5} - -@Article{aitken1976protein, - title = {Protein evolution in cyanobacteria}, - author = {AITKEN, ALASTAIR}, - year = 1976, - journal = {Nature}, - publisher = {Springer Science and Business Media LLC}, - volume = 263, - pages = {793–796}, - url = {http://dx.doi.org/10.1038/263793a0}, - issn = {1476-4687}, - doi = {10.1038/263793a0}, - number = 5580} - -@Article{shi2008genome, - title = {Genome evolution in cyanobacteria: The stable core and the variable shell}, - author = {Shi, Tuo and Falkowski, Paul G.}, - year = 2008, - journal = {Proceedings of the National Academy of Sciences}, - publisher = {Proceedings of the National Academy of Sciences}, - volume = 105, - pages = {2510–2515}, - url = {http://dx.doi.org/10.1073/pnas.0711165105}, - issn = {1091-6490}, - doi = {10.1073/pnas.0711165105}, - number = 7} - -@Article{kurmayer2009the, - title = {The Genetic Basis of Toxin Production in Cyanobacteria}, - author = {Kurmayer, Rainer and Christiansen, Guntram}, - year = 2009, - journal = {Freshwater Reviews}, - publisher = {Freshwater Biological Association (BioOne sponsored)}, - volume = 2, - pages = {31–50}, - url = {http://dx.doi.org/10.1608/FRJ-2.1.2}, - issn = {1755-084X}, - doi = {10.1608/frj-2.1.2}, - number = 1} - -@Article{blank2009timing, - title = {Timing of morphological and ecological innovations in the cyanobacteria – a key to understanding the rise in atmospheric oxygen}, - author = {BLANK, C. E. and SÁNCHEZ‐BARACALDO, P.}, - year = 2009, - journal = {Geobiology}, - publisher = {Wiley}, - volume = 8, - pages = {1–23}, - url = {http://dx.doi.org/10.1111/j.1472-4669.2009.00220.x}, - issn = {1472-4669}, - doi = {10.1111/j.1472-4669.2009.00220.x}, - number = 1} - -@Article{cai2021effects, - title = {Effects of microcystin-producing and non-microcystin-producing {{\textit{Microcystis}}} on the behavior and life history traits of Chironomus pallidivittatus}, - author = {Cai, Shenghe and Jia, Yunlu and Donde, Oscar Omondi and Wang, Zhi and Zhang, Junqian and Fang, Tao and Xiao, Bangding and Wu, Xingqiang}, - year = 2021, - journal = {Environmental Pollution}, - publisher = {Elsevier BV}, - volume = 287, - pages = 117613, - url = {http://dx.doi.org/10.1016/j.envpol.2021.117613}, - issn = {0269-7491}, - doi = {10.1016/j.envpol.2021.117613} -} - -@Article{viaordorika2004distribution, - title = {Distribution of Microcystin-Producing and Non-Microcystin-Producing {{\textit{Microcystis}}} sp. in European Freshwater Bodies: Detection of Microcystins and Microcystin Genes in Individual Colonies}, - author = {Via-Ordorika, Lorena and Fastner, Jutta and Kurmayer, Rainer and Hisbergues, Michael and Dittmann, Elke and Komarek, Jiri and Erhard, Marcel and Chorus, Ingrid}, - year = 2004, - journal = {Systematic and Applied Microbiology}, - publisher = {Elsevier BV}, - volume = 27, - pages = {592–602}, - url = {http://dx.doi.org/10.1078/0723202041748163}, - issn = {0723-2020}, - doi = {10.1078/0723202041748163}, - number = 5} - -@Article{sangolkar2006methods, - title = {Methods for determining microcystins (peptide hepatotoxins) and microcystin-producing cyanobacteria}, - author = {Sangolkar, Lalita N. and Maske, Sarika S. and Chakrabarti, Tapan}, - year = 2006, - journal = {Water Research}, - publisher = {Elsevier BV}, - volume = 40, - pages = {3485–3496}, - url = {http://dx.doi.org/10.1016/j.watres.2006.08.010}, - issn = {0043-1354}, - doi = {10.1016/j.watres.2006.08.010}, - number = 19} - -@Article{komarek2009recent, - title = {Recent changes (2008) in cyanobacteria taxonomy based on a combination of molecular background with phenotype and ecological consequences (genus and species concept)}, - author = {Komárek, Jiří}, - year = 2009, - journal = {Hydrobiologia}, - publisher = {Springer Science and Business Media LLC}, - volume = 639, - pages = {245–259}, - url = {http://dx.doi.org/10.1007/s10750-009-0031-3}, - issn = {1573-5117}, - doi = {10.1007/s10750-009-0031-3}, - number = 1} - -@Article{dayarathne2023heterologous, - title = {Heterologous expression of mtf and mtc genes of {{\textit{Pseudanabaena foetida var. intermedia}}} is sufficient to produce 2-methylisoborneol in Escherichia coli}, - author = {Dayarathne, Kaushalya and Ishikawa, Toshiki and Watanabe, Satoru and Ishikawa, Yuuma and Aikeranmu, Kadeer and Kitagawaa, Hina and Komatsubara, Natsumi and Yamaguchi, Masatoshi and Kawai-Yamada, Maki}, - year = 2023, - journal = {Microbiology Spectrum}, - publisher = {American Society for Microbiology}, - volume = 11, - url = {http://dx.doi.org/10.1128/spectrum.02561-23}, - issn = {2165-0497}, - doi = {10.1128/spectrum.02561-23}, - number = 5, - editor = {Gralnick, Jeffrey A.} -} - -@Article{rantala2003phylogenetic, - title = {Phylogenetic evidence for the early evolution of microcystin synthesis}, - author = {Rantala, Anne and Fewer, David P. and Hisbergues, Michael and Rouhiainen, Leo and Vaitomaa, Jaana and Börner, Thomas and Sivonen, Kaarina}, - year = 2003, - journal = {Proceedings of the National Academy of Sciences}, - publisher = {Proceedings of the National Academy of Sciences}, - volume = 101, - pages = {568–573}, - url = {http://dx.doi.org/10.1073/pnas.0304489101}, - issn = {1091-6490}, - doi = {10.1073/pnas.0304489101}, - number = 2} - -@Article{shih2012improving, - title = {Improving the coverage of the cyanobacterial phylum using diversity-driven genome sequencing}, - author = {Shih, Patrick M. and Wu, Dongying and Latifi, Amel and Axen, Seth D. and Fewer, David P. and Talla, Emmanuel and Calteau, Alexandra and Cai, Fei and Tandeau de Marsac, Nicole and Rippka, Rosmarie and Herdman, Michael and Sivonen, Kaarina and Coursin, Therese and Laurent, Thierry and Goodwin, Lynne and Nolan, Matt and Davenport, Karen W. and Han, Cliff S. and Rubin, Edward M. and Eisen, Jonathan A. and Woyke, Tanja and Gugger, Muriel and Kerfeld, Cheryl A.}, - year = 2012, - journal = {Proceedings of the National Academy of Sciences}, - publisher = {Proceedings of the National Academy of Sciences}, - volume = 110, - pages = {1053–1058}, - url = {http://dx.doi.org/10.1073/pnas.1217107110}, - issn = {1091-6490}, - doi = {10.1073/pnas.1217107110}, - number = 3} - - -@article{komarek1999chroococcales, - title={1. Chroococcales.—19/1}, - author={Kom{\'a}rek, J and Anagnostidis, K Cyanoprokaryota}, - journal={S{\"u}sswasserflora von Mitteleuropa; Ettl, H., G{\"a}rtner, G., Heynig, H., Mollenhauer, D., Eds}, - pages={548}, - year={1999}} - -@Article{poretsky2014strengths, - title = {Strengths and Limitations of 16S rRNA Gene Amplicon Sequencing in Revealing Temporal Microbial Community Dynamics}, - author = {Poretsky, Rachel and Rodriguez-R, Luis M. and Luo, Chengwei and Tsementzi, Despina and Konstantinidis, Konstantinos T.}, - year = 2014, - journal = {PLoS ONE}, - publisher = {Public Library of Science (PLoS)}, - volume = 9, - pages = {e93827}, - url = {http://dx.doi.org/10.1371/journal.pone.0093827}, - issn = {1932-6203}, - doi = {10.1371/journal.pone.0093827}, - number = 4, - editor = {Rodriguez-Valera, Francisco} -} - -@Article{shade2012lake, - title = {Lake microbial communities are resilient after a whole-ecosystem disturbance}, - author = {Shade, Ashley and Read, Jordan S and Youngblut, Nicholas D and Fierer, Noah and Knight, Rob and Kratz, Timothy K and Lottig, Noah R and Roden, Eric E and Stanley, Emily H and Stombaugh, Jesse and Whitaker, Rachel J and Wu, Chin H and McMahon, Katherine D}, - year = 2012, - journal = {The ISME Journal}, - publisher = {Oxford University Press (OUP)}, - volume = 6, - pages = {2153–2167}, - url = {http://dx.doi.org/10.1038/ismej.2012.56}, - issn = {1751-7370}, - doi = {10.1038/ismej.2012.56}, - number = 12} - -@report{usepa2010national, - title = {National Aquatic Resource Surveys. National Lakes Assessment 2007 (data and metadata files).}, - author = {U.S. Environmental Protection Agency}, - year = 2010, - publisher = {U.S. EPA}, - url = {https://www.epa.gov/national-aquatic-resource-surveys/data-national-aquatic-resource-surveys} -} - -@Article{matsui2015adsorption, - title = {Adsorption capacities of activated carbons for geosmin and 2-methylisoborneol vary with activated carbon particle size: Effects of adsorbent and adsorbate characteristics}, - author = {Matsui, Yoshihiko and Nakao, Soichi and Sakamoto, Asuka and Taniguchi, Takuma and Pan, Long and Matsushita, Taku and Shirasaki, Nobutaka}, - year = 2015, - journal = {Water Research}, - publisher = {Elsevier BV}, - volume = 85, - pages = {95–102}, - url = {http://dx.doi.org/10.1016/j.watres.2015.08.017}, - issn = {0043-1354}, - doi = {10.1016/j.watres.2015.08.017} -} - -@Article{bai2019oh, - title = {OH degraded 2-Methylisoborneol during the removal of algae-laden water in a drinking water treatment system: Comparison with ClO2}, - author = {Bai, Mindong and Yu, Yixuan and Cheng, Jianguo and Ji, Zhixin and Li, Ji}, - year = 2019, - journal = {Chemosphere}, - publisher = {Elsevier BV}, - volume = 236, - pages = 124342, - url = {http://dx.doi.org/10.1016/j.chemosphere.2019.124342}, - issn = {0045-6535}, - doi = {10.1016/j.chemosphere.2019.124342} -} - -@Article{xu2019impact, - title = {Impact of copper sulphate, potassium permanganate, and hydrogen peroxide on Pseudanabaena galeata cell integrity, release and degradation of 2-methylisoborneol}, - author = {Xu, Hangzhou and Brookes, Justin and Hobson, Peter and Pei, Haiyan}, - year = 2019, - journal = {Water Research}, - publisher = {Elsevier BV}, - volume = 157, - pages = {64–73}, - url = {http://dx.doi.org/10.1016/j.watres.2019.03.082}, - issn = {0043-1354}, - doi = {10.1016/j.watres.2019.03.082} -} - -@Article{ma2018degradation, - title = {Degradation of geosmin and 2-methylisoborneol in water with UV/chlorine: Influencing factors, reactive species, and possible pathways}, - author = {Ma, Lingfei and Wang, Chaoyi and Li, Haipu and Peng, Fangyuan and Yang, Zhaoguang}, - year = 2018, - journal = {Chemosphere}, - publisher = {Elsevier BV}, - volume = 211, - pages = {1166–1175}, - url = {http://dx.doi.org/10.1016/j.chemosphere.2018.08.029}, - issn = {0045-6535}, - doi = {10.1016/j.chemosphere.2018.08.029} -} - -@Article{dietrich2020a, - title = {A review: The challenge, consensus, and confusion of describing odors and tastes in drinking water}, - author = {Dietrich, Andrea M. and Burlingame, Gary A.}, - year = 2020, - journal = {Science of The Total Environment}, - publisher = {Elsevier BV}, - volume = 713, - pages = 135061, - url = {http://dx.doi.org/10.1016/j.scitotenv.2019.135061}, - issn = {0048-9697}, - doi = {10.1016/j.scitotenv.2019.135061} -} - -@Article{liu2023biodegradation, - title = {Biodegradation of 2-Methylisoborneol (2-MIB) by Single-Bacterium Isolations from Biological Filters in Drinking Water Treatment Plants}, - author = {Liu, Yuefeng and Gao, Jingsi and Li, Tuxiong and Shao, Zhichang and Wang, Jiaxin and Zhu, Jia and Song, Wenhe and Liang, Miaoqing and Zhang, Wenlong and Zhou, Jianfeng}, - year = 2023, - journal = {ACS ES&T Water}, - publisher = {American Chemical Society (ACS)}, - volume = 3, - pages = {3153–3160}, - url = {http://dx.doi.org/10.1021/acsestwater.3c00305}, - issn = {2690-0637}, - doi = {10.1021/acsestwater.3c00305}, - number = 9} - -@Article{azaria2021removal, - title = {Removal of geosmin and 2-methylisoborneol from aquaculture water by novel, alginate-based carriers: Performance and metagenomic analysis}, - author = {Azaria, Snir and Nussinovitch, Amos and Nir, Shlomo and Mordechai, Sharon and van Rijn, Jaap}, - year = 2021, - journal = {Journal of Water Process Engineering}, - publisher = {Elsevier BV}, - volume = 42, - pages = 102125, - url = {http://dx.doi.org/10.1016/j.jwpe.2021.102125}, - issn = {2214-7144}, - doi = {10.1016/j.jwpe.2021.102125} -} - -@Article{yuan2020the, - title = {The effect of water temperature on the removal of 2-methylisoborneol and geosmin by preloaded granular activated carbon}, - author = {Yuan, Jie and Huang, Yifeng and Nie, Zhijie and Hofmann, Ronald}, - year = 2020, - journal = {Water Research}, - publisher = {Elsevier BV}, - volume = 183, - pages = 116065, - url = {http://dx.doi.org/10.1016/j.watres.2020.116065}, - issn = {0043-1354}, - doi = {10.1016/j.watres.2020.116065} -} - -@Article{park2017oxidation, - title = {Oxidation of geosmin and 2-methylisoborneol by the photo-Fenton process: Kinetics, degradation intermediates, and the removal of microcystin-LR and trihalomethane from Nak-Dong River water, South Korea}, - author = {Park, Jeong-Ann and Nam, Hye-Lim and Choi, Jae-Woo and Ha, Junsoo and Lee, Sang-Hyup}, - year = 2017, - journal = {Chemical Engineering Journal}, - publisher = {Elsevier BV}, - volume = 313, - pages = {345–354}, - url = {http://dx.doi.org/10.1016/j.cej.2016.12.086}, - issn = {1385-8947}, - doi = {10.1016/j.cej.2016.12.086} -} - -@Article{izaguirre2004a, - title = {A guide to geosmin- and MIB-producing cyanobacteria in the United States}, - author = {Izaguirre, G. and Taylor, W.D.}, - year = 2004, - journal = {Water Science and Technology}, - publisher = {IWA Publishing}, - volume = 49, - pages = {19–24}, - url = {http://dx.doi.org/10.2166/wst.2004.0524}, - issn = {1996-9732}, - doi = {10.2166/wst.2004.0524}, - number = 9} - -@Article{stomp2011largescale, - title = {Large-scale biodiversity patterns in freshwater phytoplankton}, - author = {Stomp, Maayke and Huisman, Jef and Mittelbach, Gary G. and Litchman, Elena and Klausmeier, Christopher A.}, - year = 2011, - journal = {Ecology}, - publisher = {Wiley}, - volume = 92, - pages = {2096–2107}, - url = {http://dx.doi.org/10.1890/10-1023.1}, - issn = {0012-9658}, - doi = {10.1890/10-1023.1}, - number = 11} - -@Article{dodds2008eutrophication, - title = {Eutrophication of U.S. Freshwaters: Analysis of Potential Economic Damages}, - author = {Dodds, Walter K. and Bouska, Wes W. and Eitzmann, Jeffrey L. and Pilger, Tyler J. and Pitts, Kristen L. and Riley, Alyssa J. and Schloesser, Joshua T. and Thornbrugh, Darren J.}, - year = 2008, - journal = {Environmental Science & Technology}, - publisher = {American Chemical Society (ACS)}, - volume = 43, - pages = {12–19}, - url = {http://dx.doi.org/10.1021/es801217q}, - issn = {1520-5851}, - doi = {10.1021/es801217q}, - number = 1} - -@Article{sun2023spatiotemporal, - title = {Spatiotemporal patterns and drivers of phytoplankton primary productivity in China’s lakes and reservoirs at a national scale}, - author = {Sun, Kun and Deng, Wanqian and Jia, Junjie and Gao, Yang}, - year = 2023, - journal = {Global and Planetary Change}, - publisher = {Elsevier BV}, - volume = 228, - pages = 104215, - url = {http://dx.doi.org/10.1016/j.gloplacha.2023.104215}, - issn = {0921-8181}, - doi = {10.1016/j.gloplacha.2023.104215} -} - -@Article{bergstrom2008composition, - title = {Composition and dispersal of riverine and lake phytoplankton communities in connected systems with different water retention times}, - author = {BERGSTRÖM, ANN‐KRISTIN and BIGLER, CHRISTIAN and STENSDOTTER, ULRIKA and LINDSTRÖM, EVA S.}, - year = 2008, - journal = {Freshwater Biology}, - publisher = {Wiley}, - volume = 53, - pages = {2520–2529}, - url = {http://dx.doi.org/10.1111/j.1365-2427.2008.02080.x}, - issn = {1365-2427}, - doi = {10.1111/j.1365-2427.2008.02080.x}, - number = 12} - -@Article{wang2023risk, - title = {Risk Assessment for 2-MIB Odor Complaint in Drinking Water Based on Zero-Inflated Log-Normal Model}, - author = {Wang, Chunmiao and An, Wei and Zhao, Yu and Dietrich, Andrea M. and Gallagher, Daniel L. and Zhang, Yongxin and Qian, Yaohan and Yu, Jianwei and Yang, Min}, - year = 2023, - journal = {ACS ES&T Water}, - publisher = {American Chemical Society (ACS)}, - volume = 4, - pages = {146–154}, - url = {http://dx.doi.org/10.1021/acsestwater.3c00477}, - issn = {2690-0637}, - doi = {10.1021/acsestwater.3c00477}, - number = 1} - -@Article{jung2004treatment, - title = {Treatment of taste and odor material by oxidation and adsorption}, - author = {Jung, S.-W. and Baek, K.-H. and Yu, M.-J.}, - year = 2004, - journal = {Water Science and Technology}, - publisher = {IWA Publishing}, - volume = 49, - pages = {289–295}, - url = {http://dx.doi.org/10.2166/wst.2004.0588}, - issn = {1996-9732}, - doi = {10.2166/wst.2004.0588}, - number = 9} - -@Article{hu2008impacts, - title = {Impacts of the Yangtze River water transfer on the restoration of Lake Taihu}, - author = {Hu, Weiping and Zhai, Shuijing and Zhu, Zecong and Han, Hongjuan}, - year = 2008, - journal = {Ecological Engineering}, - publisher = {Elsevier BV}, - volume = 34, - pages = {30–49}, - url = {http://dx.doi.org/10.1016/j.ecoleng.2008.05.018}, - issn = {0925-8574}, - doi = {10.1016/j.ecoleng.2008.05.018}, - number = 1} - -@Article{han2024histology, - title = {Histology and transcriptomic analysis reveal the inflammation and affected pathways under 2-methylisoborneol (2-MIB) exposure on grass carp}, - author = {Han, Huan and Zhang, Jun-ming and Ji, Shuang and Zeng, Xiang-biao and Jin, Xi-chen and Shen, Zi-qian and Xie, Bin and Luo, Xue-neng and Li, Kang and Liu, Li-ping}, - year = 2024, - journal = {Science of The Total Environment}, - publisher = {Elsevier BV}, - volume = 938, - pages = 173233, - url = {http://dx.doi.org/10.1016/j.scitotenv.2024.173233}, - issn = {0048-9697}, - doi = {10.1016/j.scitotenv.2024.173233} -} - -@Article{paulemercado2024climate, - title = {Climate and land use shape the water balance and water quality in selected European lakes}, - author = {Paule-Mercado, Ma. Cristina and Rabaneda-Bueno, Rubén and Porcal, Petr and Kopacek, Marek and Huneau, Frederic and Vystavna, Yuliya}, - year = 2024, - journal = {Scientific Reports}, - publisher = {Springer Science and Business Media LLC}, - volume = 14, - url = {http://dx.doi.org/10.1038/s41598-024-58401-3}, - issn = {2045-2322}, - doi = {10.1038/s41598-024-58401-3}, - number = 1} - -@Article{ma2006chou, - title = {臭氧氧化分解饮用水中嗅味物质2-甲基异莰醇}, - author = {马军 and 李学艳 and 陈忠林 and 齐飞}, - year = 2006, - journal = {环境科学}, - pages = {2483--2487}, - number = 12, - issn = {0250-3301}, - doi = {10.13227/j.hjkx.2006.12.021} -} - -@Article{lalezarycraig1988optimizing, - title = {Optimizing the Removal of Geosmin and 2‐Methylisoborneol by Powdered Activated Carbon}, - author = {Lalezary‐Craig, Shala and Pirbazari, Massoud and Dale, Melissa S. and Tanaka, Theodore S. and McGuire, Michael J.}, - year = 1988, - journal = {Journal AWWA}, - publisher = {Wiley}, - volume = 80, - pages = {73–80}, - url = {http://dx.doi.org/10.1002/j.1551-8833.1988.tb03028.x}, - issn = {1551-8833}, - doi = {10.1002/j.1551-8833.1988.tb03028.x}, - number = 4} - -@Article{ceronvivas2022geosmin, - title = {Geosmin and 2-methylisoborneol removal in drinking water treatment}, - author = {Cerón-Vivas, Alexandra and Villamizar León, Maryory Patricia and Cajigas, Álvaro Andrés}, - year = 2022, - journal = {Water Practice and Technology}, - publisher = {IWA Publishing}, - volume = 18, - pages = {159–167}, - url = {http://dx.doi.org/10.2166/wpt.2022.167}, - issn = {1751-231X}, - doi = {10.2166/wpt.2022.167}, - number = 1} - -@Article{nowack2003enhancing, - title = {Enhancing Activated Carbon Adsorption of 2-Methylisoborneol:  Methane and Steam Treatments}, - author = {Nowack, Kirk O. and Cannon, Fred S. and Mazyck, David W.}, - year = 2003, - journal = {Environmental Science & Technology}, - publisher = {American Chemical Society (ACS)}, - volume = 38, - pages = {276–284}, - url = {http://dx.doi.org/10.1021/es026397j}, - issn = {1520-5851}, - doi = {10.1021/es026397j}, - number = 1} - -@Article{elhadi2004removal, - title = {Removal of geosmin and 2-methylisoborneol by biological filtration}, - author = {Elhadi, S.L.N. and Huck, P.M. and Slawson, R.M.}, - year = 2004, - journal = {Water Science and Technology}, - publisher = {IWA Publishing}, - volume = 49, - pages = {273–280}, - url = {http://dx.doi.org/10.2166/wst.2004.0586}, - issn = {1996-9732}, - doi = {10.2166/wst.2004.0586}, - number = 9} - -@Article{song2007ultrasonically, - title = {Ultrasonically induced degradation of 2-methylisoborneol and geosmin}, - author = {Song, Weihua and O’Shea, Kevin E.}, - year = 2007, - journal = {Water Research}, - publisher = {Elsevier BV}, - volume = 41, - pages = {2672–2678}, - url = {http://dx.doi.org/10.1016/j.watres.2007.02.041}, - issn = {0043-1354}, - doi = {10.1016/j.watres.2007.02.041}, - number = 12} - -@Article{vik1988pilot, - title = {Pilot Scale Studies of Geosmin and 2-Methylisoborneol Removal}, - author = {Vik, E. A. and Storhaug, R. and Naes, H. and Utkilen, H. C.}, - year = 1988, - journal = {Water Science and Technology}, - publisher = {IWA Publishing}, - volume = 20, - pages = {229–236}, - url = {http://dx.doi.org/10.2166/wst.1988.0247}, - issn = {1996-9732}, - doi = {10.2166/wst.1988.0247}, - number = {8–9} -} - -@Article{zoschke2011adsorption, - title = {Adsorption of geosmin and 2-methylisoborneol onto powdered activated carbon at non-equilibrium conditions: Influence of NOM and process modelling}, - author = {Zoschke, Kristin and Engel, Christina and Börnick, Hilmar and Worch, Eckhard}, - year = 2011, - journal = {Water Research}, - publisher = {Elsevier BV}, - volume = 45, - pages = {4544–4550}, - url = {http://dx.doi.org/10.1016/j.watres.2011.06.006}, - issn = {0043-1354}, - doi = {10.1016/j.watres.2011.06.006}, - number = 15} - -@Article{berlt2020comparative, - title = {Comparative assessment of the degradation of 2-methylisoborneol and geosmin in freshwater using advanced oxidation processes}, - author = {Berlt, Mariana Maria Gassen and Schneider, Rosana de Cassia de Souza and Machado, Ênio Leandro and Kist, Lourdes Teresinha}, - year = 2020, - journal = {Environmental Technology}, - publisher = {Informa UK Limited}, - volume = 42, - pages = {3832–3839}, - url = {http://dx.doi.org/10.1080/09593330.2020.1743371}, - issn = {1479-487X}, - doi = {10.1080/09593330.2020.1743371}, - number = 24} - -@Article{yuan2022adsorption, - title = {Adsorption and biodegradation of 2-methylisoborneol and geosmin in drinking water granular activated carbon filters: A review and meta-analysis}, - author = {Yuan, Jie and Hofmann, Ron}, - year = 2022, - journal = {Journal of Hazardous Materials}, - publisher = {Elsevier BV}, - volume = 440, - pages = 129838, - url = {http://dx.doi.org/10.1016/j.jhazmat.2022.129838}, - issn = {0304-3894}, - doi = {10.1016/j.jhazmat.2022.129838} -} - -@Article{yuan2022evaluating, - title = {Evaluating the relative adsorption and biodegradation of 2-methylisoborneol and geosmin across granular activated carbon filter-adsorbers}, - author = {Yuan, Jie and Mortazavian, Soroosh and Crowe, Grace and Flick, Robert and Passeport, Elodie and Hofmann, Ron}, - year = 2022, - journal = {Water Research}, - publisher = {Elsevier BV}, - volume = 215, - pages = 118239, - url = {http://dx.doi.org/10.1016/j.watres.2022.118239}, - issn = {0043-1354}, - doi = {10.1016/j.watres.2022.118239} -} - -@Article{shimabuku2019biodegradation, - title = {Biodegradation and attenuation of MIB and 2{,}4-D in drinking water biologically active sand and activated carbon filters}, - author = {Shimabuku, Kyle K. and Zearley, Thomas L. and Dowdell, Katherine S. and Summers, R. Scott}, - year = 2019, - journal = {Environ. Sci.: Water Res. Technol.}, - publisher = {The Royal Society of Chemistry}, - volume = 5, - pages = {849--860}, - url = {http://dx.doi.org/10.1039/C9EW00054B}, - issue = 5, - doi = {10.1039/C9EW00054B} -} - -@Article{huang2019experimental, - title = {Experimental validation of a test to estimate the remaining adsorption capacity of granular activated carbon for taste and odour compounds}, - author = {Huang, Yifeng and Nie, Zhijie and Yuan, Jie and Murray, Audrey and Li, Yi and Woods-Chabane, Gwen and Hofmann, Ron}, - year = 2019, - journal = {Environmental Science: Water Research & Technology}, - publisher = {Royal Society of Chemistry (RSC)}, - volume = 5, - pages = {609–617}, - url = {http://dx.doi.org/10.1039/C8EW00600H}, - issn = {2053-1419}, - doi = {10.1039/c8ew00600h}, - number = 3} - -@Article{beniwal2018ozoneperoxide, - title = {Ozone/peroxide advanced oxidation in combination with biofiltration for taste and odour control and organics removal}, - author = {Beniwal, Divyam and Taylor-Edmonds, Liz and Armour, John and Andrews, Robert C.}, - year = 2018, - journal = {Chemosphere}, - publisher = {Elsevier BV}, - volume = 212, - pages = {272–281}, - url = {http://dx.doi.org/10.1016/j.chemosphere.2018.08.015}, - issn = {0045-6535}, - doi = {10.1016/j.chemosphere.2018.08.015} -} - -@Article{park2015comparison, - title = {Comparison of O3 + GAC, O3 + H2O2 + GAC, and GAC unit operation on natural organic matter and taste and odor causing compounds removal using a pilot plant study}, - author = {Park, Hanbai and Kim, Tae-Yul and Woo, Dalsik and Cho, Yong-Sik}, - year = 2015, - journal = {Water Supply}, - publisher = {IWA Publishing}, - volume = 15, - pages = {1383–1395}, - url = {http://dx.doi.org/10.2166/ws.2015.102}, - issn = {1607-0798}, - doi = {10.2166/ws.2015.102}, - number = 6} - -@Article{zamyadi2015impact, - title = {Impact of UV–H2O2 Advanced Oxidation and Aging Processes on GAC Capacity for the Removal of Cyanobacterial Taste and Odor Compounds}, - author = {Zamyadi, Arash and Sawade, Emma and Ho, Lionel and Newcombe, Gayle and Hofmann, Ron}, - year = 2015, - journal = {Environmental Health Insights}, - publisher = {SAGE Publications}, - volume = {9s3}, - pages = {EHI.S29431}, - url = {http://dx.doi.org/10.4137/EHI.S29431}, - issn = {1178-6302}, - doi = {10.4137/ehi.s29431} -} - -@Article{summers2013granular, - title = {Granular activated carbon adsorption of MIB in the presence of dissolved organic matter}, - author = {Summers, R. Scott and Kim, Soo Myung and Shimabuku, Kyle and Chae, Seon-Ha and Corwin, Christopher J.}, - year = 2013, - journal = {Water Research}, - publisher = {Elsevier BV}, - volume = 47, - pages = {3507–3513}, - url = {http://dx.doi.org/10.1016/j.watres.2013.03.054}, - issn = {0043-1354}, - doi = {10.1016/j.watres.2013.03.054}, - number = 10} - -@Article{smith2012assessment, - title = {Assessment of alternate characterization tests for prediction of taste and odour control by granular activated carbon}, - author = {Smith, Kyla and Zhang, Xiaodan and Hofmann, Ron}, - year = 2012, - journal = {Water Supply}, - publisher = {IWA Publishing}, - volume = 12, - pages = {531–539}, - url = {http://dx.doi.org/10.2166/ws.2012.026}, - issn = {1607-0798}, - doi = {10.2166/ws.2012.026}, - number = 4} - -@Article{ho2010granular, - title = {Granular Activated Carbon Adsorption of 2-Methylisoborneol (MIB): Pilot- and Laboratory-Scale Evaluations}, - author = {Ho, Lionel and Newcombe, Gayle}, - year = 2010, - journal = {Journal of Environmental Engineering}, - publisher = {American Society of Civil Engineers (ASCE)}, - volume = 136, - pages = {965–974}, - url = {http://dx.doi.org/10.1061/(ASCE)EE.1943-7870.0000231}, - issn = {1943-7870}, - doi = {10.1061/(asce)ee.1943-7870.0000231}, - number = 9} - -@Article{yang2010pilot, - title = {Pilot study of drinking water treatment with GAC, O3/BAC and membrane processes in Kinmen Island, Taiwan}, - author = {Yang, Jong-Sheng and Yuan, Dong-Xing and Weng, Tzu-Pao}, - year = 2010, - journal = {Desalination}, - publisher = {Elsevier BV}, - volume = 263, - pages = {271–278}, - url = {http://dx.doi.org/10.1016/j.desal.2010.06.069}, - issn = {0011-9164}, - doi = {10.1016/j.desal.2010.06.069}, - number = {1–3} -} - -@Article{drikas2009removal, - title = {Removal of MIB and geosmin using granular activated carbon with and without MIEX pre-treatment}, - author = {Drikas, Mary and Dixon, Mike and Morran, Jim}, - year = 2009, - journal = {Water Research}, - publisher = {Elsevier BV}, - volume = 43, - pages = {5151–5159}, - url = {http://dx.doi.org/10.1016/j.watres.2009.08.016}, - issn = {0043-1354}, - doi = {10.1016/j.watres.2009.08.016}, - number = 20} - -@Article{persson2007removal, - title = {Removal of Geosmin and MIB by Biofiltration - an Investigation Discriminating Between Adsorption and Biodegradation}, - author = {Persson, F. and Heinicke, G. and Hedberg, T. and Hermansson, M. and Uhl, W.}, - year = 2007, - journal = {Environmental Technology}, - publisher = {Informa UK Limited}, - volume = 28, - pages = {95–104}, - url = {http://dx.doi.org/10.1080/09593332808618770}, - issn = {1479-487X}, - doi = {10.1080/09593332808618770}, - number = 1} - -@Article{ndiongue2006using, - title = {Using Pilot-Scale Investigations to Estimate the Remaining Geosmin and MIB Removal Capacity of Full-Scale GAC-Capped Drinking Water Filters}, - author = {Ndiongue, Souleymane and Anderson, William B. and Tadwalkar, Abhay and Rudnickas, John and Lin, Margaret and Huck, Peter M.}, - year = 2006, - journal = {Water Quality Research Journal}, - publisher = {IWA Publishing}, - volume = 41, - pages = {296–306}, - url = {http://dx.doi.org/10.2166/wqrj.2006.033}, - issn = {2408-9443}, - doi = {10.2166/wqrj.2006.033}, - number = 3} - -@Article{elhadi2006factors, - title = {Factors affecting the removal of geosmin and MIB in drinking water biofilters}, - author = {Elhadi, Sarah L.N. and Huck, Peter M. and Slawson, Robin M.}, - year = 2006, - journal = {Journal AWWA}, - publisher = {Wiley}, - volume = 98, - pages = {108–119}, - url = {http://dx.doi.org/10.1002/j.1551-8833.2006.tb07738.x}, - issn = {1551-8833}, - doi = {10.1002/j.1551-8833.2006.tb07738.x}, - number = 8} - -@Article{mackenzie2005tailored, - title = {Tailored GAC for the Effective Control of 2‐Methylisoborneol}, - author = {Mackenzie, Julee A. and Tennant, Matthew F. and Mazyck, David W.}, - year = 2005, - journal = {Journal AWWA}, - publisher = {Wiley}, - volume = 97, - pages = {76–87}, - url = {http://dx.doi.org/10.1002/j.1551-8833.2005.tb10914.x}, - issn = {1551-8833}, - doi = {10.1002/j.1551-8833.2005.tb10914.x}, - number = 6} - -@Article{nerenberg2000ozonebiofiltration, - title = {ozone/biofiltration for removing MIB AND GEOSMIN}, - author = {Nerenberg, Robert and Rittmann, Bruce E. and Soucie, William J.}, - year = 2000, - journal = {Journal AWWA}, - publisher = {Wiley}, - volume = 92, - pages = {85–95}, - url = {http://dx.doi.org/10.1002/j.1551-8833.2000.tb09073.x}, - issn = {1551-8833}, - doi = {10.1002/j.1551-8833.2000.tb09073.x}, - number = 12} - -@Article{gillogly1999determining, - title = {Determining GAC bed life}, - author = {Gillogly, Thomas E.T. and Snoeyink, Vernon L. and Vogel, John C. and Wilson, Claude M. and Royal, Earl P.}, - year = 1999, - journal = {Journal AWWA}, - publisher = {Wiley}, - volume = 91, - pages = {98–110}, - url = {http://dx.doi.org/10.1002/j.1551-8833.1999.tb08687.x}, - issn = {1551-8833}, - doi = {10.1002/j.1551-8833.1999.tb08687.x}, - number = 8} - -@Article{doederer2017mib, - title = {MIB and geosmin removal during adsorption and biodegradation phases of GAC filtration}, - author = {Doederer, K. and De Vera, G. A. and Espino, M. P. and Pype, M.-L. and Gale, D. and Keller, J.}, - year = 2017, - journal = {Water Supply}, - publisher = {IWA Publishing}, - volume = 18, - pages = {1449–1455}, - url = {http://dx.doi.org/10.2166/ws.2017.213}, - issn = {1607-0798}, - doi = {10.2166/ws.2017.213}, - number = 4} - -@Article{chang2022role, - title = {Role of biological granular activated carbon in contaminant removal and ultrafiltration membrane performance in a full-scale system}, - author = {Chang, Haiqing and Yu, Haikuan and Li, Xing and Zhou, Zhiwei and Liang, Heng and Song, Wuchang and Ji, Hongjie and Liang, Ying and Vidic, Radisav D.}, - year = 2022, - journal = {Journal of Membrane Science}, - publisher = {Elsevier BV}, - volume = 644, - pages = 120122, - url = {http://dx.doi.org/10.1016/j.memsci.2021.120122}, - issn = {0376-7388}, - doi = {10.1016/j.memsci.2021.120122} -} - -@Article{kim2021geosmin, - title = {Geosmin and 2-MIB Removal by Full-Scale Drinking Water Treatment Processes in the Republic of Korea}, - author = {Kim, Keug Tae and Park, Yong-Gyun}, - year = 2021, - journal = {Water}, - publisher = {MDPI AG}, - volume = 13, - pages = 628, - url = {http://dx.doi.org/10.3390/w13050628}, - issn = {2073-4441}, - doi = {10.3390/w13050628}, - number = 5} - -@Article{fundneider2021empty, - title = {Empty bed contact time: The key for micropollutant removal in activated carbon filters}, - author = {Fundneider, T. and Acevedo Alonso, V. and Abbt-Braun, G. and Wick, A. and Albrecht, D. and Lackner, S.}, - year = 2021, - journal = {Water Research}, - publisher = {Elsevier BV}, - volume = 191, - pages = 116765, - url = {http://dx.doi.org/10.1016/j.watres.2020.116765}, - issn = {0043-1354}, - doi = {10.1016/j.watres.2020.116765} -} - -@Article{nicklisch2001the, - title = {The influence of light fluctuations on growth and photosynthesis of Stephanodiscus neoastraea (diatom) and Planktothrix agardhii (cyanobacterium)}, - author = {Nicklisch, A. and Fietz, Susanne}, - year = 2001, - journal = {Archiv fur Hydrobiologie}, - volume = 151, - pages = {141--156} -} - -@Article{kimtiam2022the, - title = {The success of the bloom-forming cyanobacteria Planktothrix: Genotypes variability supports variable responses to light and temperature stress}, - author = {Kim Tiam, Sandra and Comte, Katia and Dalle, Caroline and Delagrange, Marine and Djediat, Chakib and Ducos, Bertrand and Duval, Charlotte and Feilke, Kathleen and Hamlaoui, Sahima and Le Manach, Séverine and Setif, Pierre and Yéprémian, Claude and Marie, Benjamin and Kirilovsky, Diana and Gugger, Muriel and Bernard, Cécile}, - year = 2022, - journal = {Harmful Algae}, - publisher = {Elsevier BV}, - volume = 117, - pages = 102285, - url = {http://dx.doi.org/10.1016/j.hal.2022.102285}, - issn = {1568-9883}, - doi = {10.1016/j.hal.2022.102285} -} - -@Article{lin2024femn, - title = {Fe/Mn (oxyhydr)oxides reductive dissolution promoted by cyanobacterial algal bloom-derived dissolved organic matter caused sediment W release during an algal bloom in Taihu Lake}, - author = {Lin, Juan and Chen, Xiang and Liu, Yvlu and Wang, Yibo and Shuai, Jinxia and Chen, Musong}, - year = 2024, - journal = {Water Research}, - publisher = {Elsevier BV}, - pages = 121899, - url = {http://dx.doi.org/10.1016/j.watres.2024.121899}, - issn = {0043-1354}, - doi = {10.1016/j.watres.2024.121899} -} - -@Article{aguilera2019raphidiopsis, - title = {Raphidiopsis mediterranea (Nostocales) exhibits a flexible growth strategy under light and nutrient fluctuations in contrast to Planktothrix agardhii (Oscillatoriales)}, - author = {Aguilera, Anabella and Aubriot, Luis and Echenique, Ricardo O. and Donadelli, Jorge L. and Salerno, Graciela L.}, - year = 2019, - journal = {Hydrobiologia}, - publisher = {Springer Science and Business Media LLC}, - volume = 839, - pages = {145–157}, - url = {http://dx.doi.org/10.1007/s10750-019-04002-5}, - issn = {1573-5117}, - doi = {10.1007/s10750-019-04002-5}, - number = 1} - -@Article{djediat2020light, - title = {Light stress in green and red Planktothrix strains: The orange carotenoid protein and its related photoprotective mechanism}, - author = {Djediat, Chakib and Feilke, Kathleen and Brochard, Arthur and Caramelle, Lucie and Kim Tiam, Sandra and Sétif, Pierre and Gauvrit, Theo and Yéprémian, Claude and Wilson, Adjélé and Talbot, Léa and Marie, Benjamin and Kirilovsky, Diana and Bernard, Cécile}, - year = 2020, - journal = {Biochimica et Biophysica Acta (BBA) - Bioenergetics}, - publisher = {Elsevier BV}, - volume = 1861, - pages = 148037, - url = {http://dx.doi.org/10.1016/j.bbabio.2019.06.009}, - issn = {0005-2728}, - doi = {10.1016/j.bbabio.2019.06.009}, - number = 4} - -@Article{li2020photosynthetic, - title = {Photosynthetic adaptation to light availability shapes the ecological success of bloom‐forming cyanobacterium Pseudanabaena to iron limitation}, - author = {Li, Zheng‐Ke and Dai, Guo‐Zheng and Zhang, Yong and Xu, Kui and Bretherton, Laura and Finkel, Zoe V. and Irwin, Andrew J. and Juneau, Philippe and Qiu, Bao‐Sheng}, - year = 2020, - journal = {Journal of Phycology}, - publisher = {Wiley}, - volume = 56, - pages = {1457–1467}, - url = {http://dx.doi.org/10.1111/jpy.13040}, - issn = {1529-8817}, - doi = {10.1111/jpy.13040}, - number = 6, - editor = {Posewitz, M.} -} - -@Article{abeynayaka2018effects, - title = {Effects of elevated pressure on Pseudanabaena galeata Böcher in varying light and dark environments}, - author = {Abeynayaka, Helayaye Damitha Lakmali and Asaeda, Takashi and Rashid, M. Harun}, - year = 2018, - journal = {Environmental Science and Pollution Research}, - publisher = {Springer Science and Business Media LLC}, - volume = 25, - pages = {21224–21232}, - url = {http://dx.doi.org/10.1007/s11356-018-2218-5}, - issn = {1614-7499}, - doi = {10.1007/s11356-018-2218-5}, - number = 21} - -@Article{senavirathna2023temporal, - title = {Temporal variation of 2‐MIB and geosmin production by Pseudanabaena galeata and Phormidium ambiguum exposed to high‐intensity light}, - author = {Senavirathna, Mudalige Don Hiranya Jayasanka and Jayasekara, Mohoppu Arachchillage Dasun Dineka}, - year = 2023, - journal = {Water Environment Research}, - publisher = {Wiley}, - volume = 95, - url = {http://dx.doi.org/10.1002/wer.10834}, - issn = {1554-7531}, - doi = {10.1002/wer.10834}, - number = 1} - -@Article{ceglowska2020characteristics, - title = {Characteristics of cyanobacterium Pseudanabaena galeata CCNP1313 from the Baltic Sea}, - author = {Cegłowska, M. and Toruńska-Sitarz, A. and Stoń-Egiert, J. and Mazur-Marzec, H. and Kosakowska, A.}, - year = 2020, - journal = {Algal Research}, - publisher = {Elsevier BV}, - volume = 47, - pages = 101861, - url = {http://dx.doi.org/10.1016/j.algal.2020.101861}, - issn = {2211-9264}, - doi = {10.1016/j.algal.2020.101861} -} - -@Article{khan2018characterisation, - title = {Characterisation of Pseudanabaena amphigranulata (Synechococcales) isolated from a man-made pond, Malaysia: a polyphasic approach}, - author = {Khan, Zoya and Wan Omar, Wan Maznah and Mohd Sidik Merican, Faradina Merican and Convey, Peter and Foong, Choon Pin and Najimudin, Nazalan}, - year = 2018, - journal = {Journal of Applied Phycology}, - publisher = {Springer Science and Business Media LLC}, - volume = 30, - pages = {3187–3196}, - url = {http://dx.doi.org/10.1007/s10811-018-1392-7}, - issn = {1573-5176}, - doi = {10.1007/s10811-018-1392-7}, - number = 6} - -@Article{wang2024production, - title = {Production and release of 2-MIB in Pseudanabaena: Effects of growth phases on cell characteristics and 2-MIB yield}, - author = {Wang, Hailing and Li, Lin and Cheng, Shaozhe and Chen, Liang and Zhang, Haiyang and Zhang, Xuezhi}, - year = 2024, - journal = {Ecotoxicology and Environmental Safety}, - publisher = {Elsevier BV}, - volume = 274, - pages = 116198, - url = {http://dx.doi.org/10.1016/j.ecoenv.2024.116198}, - issn = {0147-6513}, - doi = {10.1016/j.ecoenv.2024.116198} -} - -@Article{khan2017identification, - title = {Identification and phenotypic plasticity of Pseudanabaena catenata from the Svalbard archipelago}, - author = {Khan, Zoya and Wan Omar, Wan Maznah and Merican, Faradina Merican Mohd Sidik and Azizan, Asmimie Asmawarnie and Foong, Choon Pin and Convey, Peter and Najimudin, Nazalan and Smykla, Jerzy and Alias, Siti Aisyah}, - year = 2017, - journal = {Polish Polar Research}, - publisher = {Walter de Gruyter GmbH}, - volume = 38, - pages = {445–458}, - url = {http://dx.doi.org/10.1515/popore-2017-0022}, - issn = {2081-8262}, - doi = {10.1515/popore-2017-0022}, - number = 4} - -@Article{wang2023responses, - title = {Responses of phytoplankton community dynamics to reduced underwater light in spring}, - author = {Wang, Liya and Zhang, Min and Meng, Yangyang and Yang, Zhen and Shi, Xiaoli and Yu, Yang and Shi, Limei}, - year = 2023, - journal = {Aquatic Ecology}, - publisher = {Springer Science and Business Media LLC}, - volume = 57, - pages = {797–812}, - url = {http://dx.doi.org/10.1007/s10452-023-10050-w}, - issn = {1573-5125}, - doi = {10.1007/s10452-023-10050-w}, - number = 3} - -@Article{foy1982photosyntheticb, - title = {Photosynthetic characteristics of planktonic blue-green algae: Changes in photosynthetic capacity and pigmentation ofOscillatoria redekeivan Goor under high and low light}, - author = {Foy, R.H. and Gibson, C.E.}, - year = 1982, - journal = {British Phycological Journal}, - publisher = {Informa UK Limited}, - volume = 17, - pages = {183–193}, - url = {http://dx.doi.org/10.1080/00071618200650181}, - issn = {0007-1617}, - doi = {10.1080/00071618200650181}, - number = 2} - -@Article{konopka1981influence, - title = {Influence of Temperature, Oxygen, and pH on a Metalimnetic Population of Oscillatoria rubescens}, - author = {Konopka, Allan}, - year = 1981, - journal = {Applied and Environmental Microbiology}, - publisher = {American Society for Microbiology}, - volume = 42, - pages = {102–108}, - url = {http://dx.doi.org/10.1128/aem.42.1.102-108.1981}, - issn = {1098-5336}, - doi = {10.1128/aem.42.1.102-108.1981}, - number = 1} - -@Article{feuillade1990the, - title = {The effect of light on the release of organic compounds by the cyanobacteriumOscillatoria rubescens}, - author = {Feuillade, M. and Feuillade, J. and Fiala, V.}, - year = 1990, - journal = {Aquatic Sciences}, - publisher = {Springer Science and Business Media LLC}, - volume = 52, - pages = {345–359}, - url = {http://dx.doi.org/10.1007/BF00879762}, - issn = {1420-9055}, - doi = {10.1007/bf00879762}, - number = 4} - -@Article{bormans2013cylindrospermopsin, - title = {Cylindrospermopsin Accumulation and Release by the Benthic Cyanobacterium Oscillatoria sp. PCC 6506 under Different Light Conditions and Growth Phases}, - author = {Bormans, Myriam and Lengronne, Marion and Brient, Luc and Duval, Charlotte}, - year = 2013, - journal = {Bulletin of Environmental Contamination and Toxicology}, - publisher = {Springer Science and Business Media LLC}, - volume = 92, - pages = {243–247}, - url = {http://dx.doi.org/10.1007/s00128-013-1144-y}, - issn = {1432-0800}, - doi = {10.1007/s00128-013-1144-y}, - number = 2} - -@Article{wachi1995effect, - title = {Effect of ultraviolet-A (UV-A) light on growth, photosynthetic activity and production of biopterin glucoside by the marine UV-A resistant cyanobacterium Oscillatoria sp.}, - author = {Wachi, Youji and Grant Burgess, J. and Iwamoto, Kaori and Yamada, Noriko and Nakamura, Noriyuki and Matsunaga, Tadashi}, - year = 1995, - journal = {Biochimica et Biophysica Acta (BBA) - General Subjects}, - publisher = {Elsevier BV}, - volume = 1244, - pages = {165–168}, - url = {http://dx.doi.org/10.1016/0304-4165(94)00219-N}, - issn = {0304-4165}, - doi = {10.1016/0304-4165(94)00219-n}, - number = 1} - -@Article{gibson1983the, - title = {The photosynthesis and growth efficiency of a planktonic blue-green alga,Oscillatoria redekei}, - author = {Gibson, C.E. and Foy, R.H.}, - year = 1983, - journal = {British Phycological Journal}, - publisher = {Informa UK Limited}, - volume = 18, - pages = {39–45}, - url = {http://dx.doi.org/10.1080/00071618300650051}, - issn = {0007-1617}, - doi = {10.1080/00071618300650051}, - number = 1} - -@Article{alkhazali2023effect, - title = {Effect of light intensity on carbohydrates, lipids contents, and bioethanol production in two algal species of Coelastrella saipanensis and Oscillatoria duplisecta}, - author = {Al-Khazali, Zahra K.M. and Alghanmi, Haider A.}, - year = 2023, - journal = {International Journal of Aquatic Biology}, - volume = 11, - pages = {457–469}, - url = {http://ij-aquaticbiology.com/index.php/ijab/article/view/2097}, - doi = {10.22034/ijab.v11i5.2097}, - number = 5} - -@Article{contrerasropero2022the, - title = {The Effect of LEDs on Biomass and Phycobiliproteins Production in Thermotolerant Oscillatoria sp.}, - author = {Contreras-Ropero, Jefferson E. and Lidueñez-Ballesteros, Valentina S. and Rodríguez-Bohórquez, Angie D. and García-Martínez, Janet B. and Urbina-Suarez, Néstor A. and López-Barrera, Germán L. and Barajas-Solano, Andrés F. and Bryan, Samantha J. and Zuorro, Antonio}, - year = 2022, - journal = {Applied Sciences}, - publisher = {MDPI AG}, - volume = 12, - pages = 11664, - url = {http://dx.doi.org/10.3390/app122211664}, - issn = {2076-3417}, - doi = {10.3390/app122211664}, - number = 22} - -@Article{mohanty2022effects, - title = {Effects of Light and Temperature on the Metabolic Profiling of Two Habitat-Dependent Bloom-Forming Cyanobacteria}, - author = {Mohanty, Bijayalaxmi and Majedi, Seyed Mohammad and Pavagadhi, Shruti and Te, Shu Harn and Boo, Chek Yin and Gin, Karina Yew-Hoong and Swarup, Sanjay}, - year = 2022, - journal = {Metabolites}, - publisher = {MDPI AG}, - volume = 12, - pages = 406, - url = {http://dx.doi.org/10.3390/metabo12050406}, - issn = {2218-1989}, - doi = {10.3390/metabo12050406}, - number = 5} - -@Article{lenard2022planktothrix, - title = {Planktothrix agardhii versus Planktothrix rubescens: Separation of Ecological Niches and Consequences of Cyanobacterial Dominance in Freshwater}, - author = {Lenard, Tomasz and Poniewozik, Małgorzata}, - year = 2022, - journal = {International Journal of Environmental Research and Public Health}, - publisher = {MDPI AG}, - volume = 19, - pages = 14897, - url = {http://dx.doi.org/10.3390/ijerph192214897}, - issn = {1660-4601}, - doi = {10.3390/ijerph192214897}, - number = 22} - -@Article{duong2021auxin, - title = {Auxin production of the filamentous cyanobacterial Planktothricoides strain isolated from a polluted river in Vietnam}, - author = {Duong, Thi Thuy and Nguyen, Thi Thu Lien and Dinh, Thi Hai Van and Hoang, Thi Quynh and Vu, Thi Nguyet and Doan, Thi Oanh and Dang, Thi Mai Anh and Le, Thi Phuong Quynh and Tran, Dang Thuan and Le, Van Nhan and Nguyen, Quang Trung and Le, Phuong Thu and Nguyen, Trung Kien and Pham, Thi Dau and Bui, Ha Manh}, - year = 2021, - journal = {Chemosphere}, - publisher = {Elsevier BV}, - volume = 284, - pages = 131242, - url = {http://dx.doi.org/10.1016/j.chemosphere.2021.131242}, - issn = {0045-6535}, - doi = {10.1016/j.chemosphere.2021.131242} -} - -@Article{liu2013polyphasic, - title = {Polyphasic characterization of {{\textit{Planktothrix spiroides}}} sp. nov. (Oscillatoriales, Cyanobacteria), a freshwater bloom-forming alga superficially resemblingArthrospira}, - author = {Liu, Yang and Wang, Zhongjie and Lin, Shen and Yu, Gongliang and Li, Renhui}, - year = 2013, - journal = {Phycologia}, - publisher = {Informa UK Limited}, - volume = 52, - pages = {326–332}, - url = {http://dx.doi.org/10.2216/13-142.1}, - issn = {2330-2968}, - doi = {10.2216/13-142.1}, - number = 4} - -@Article{thioanh2020isolation, - title = {Isolation and screening producing growth regulator cyanobacteria strains}, - author = {Thi Oanh, Doan and Thi Thuy, Duong and Thi Thu Lien, Nguyen and Thi Mai Anh, Dang and Thi Quynh, Hoang and Minh Thang, Hoang and Thi Nguyet, Vu and Phuong Quynh, Le Thi}, - year = 2020, - journal = {Vietnam Journal of Biotechnology}, - publisher = {Publishing House for Science and Technology, Vietnam Academy of Science and Technology (Publications)}, - volume = 18, - pages = {571–579}, - url = {http://dx.doi.org/10.15625/1811-4989/18/3/15003}, - issn = {1811-4989}, - doi = {10.15625/1811-4989/18/3/15003}, - number = 3} - -@mastersthesis{wang2019shang, - author = {王梦梦}, - title = {上海市河道拉氏拟浮丝藻（{{\textit{Planktonthricoides raciborskii}}}）与环境因子的关系研究}, - school = {上海海洋大学}, - year = {2019} -} - -@Article{komarek2015review, - title = {Review of the cyanobacterial genera implying planktic species after recent taxonomic revisions according to polyphasic methods: state as of 2014}, - author = {Komárek, Jiří}, - year = 2015, - journal = {Hydrobiologia}, - publisher = {Springer Science and Business Media LLC}, - volume = 764, - pages = {259–270}, - url = {http://dx.doi.org/10.1007/s10750-015-2242-0}, - issn = {1573-5117}, - doi = {10.1007/s10750-015-2242-0}, - number = 1} - -@Article{sprouffske2016growthcurver, - title = {Growthcurver: an R package for obtaining interpretable metrics from microbial growth curves}, - author = {Sprouffske, Kathleen and Wagner, Andreas}, - year = 2016, - journal = {BMC Bioinformatics}, - publisher = {Springer Science and Business Media LLC}, - volume = 17, - url = {http://dx.doi.org/10.1186/s12859-016-1016-7}, - issn = {1471-2105}, - doi = {10.1186/s12859-016-1016-7}, - number = 1} - -@Article{jones2024current, - title = {Current and future global water scarcity intensifies when accounting for surface water quality}, - author = {Jones, Edward R. and Bierkens, Marc F. P. and van Vliet, Michelle T. H.}, - year = 2024, - journal = {Nature Climate Change}, - publisher = {Springer Science and Business Media LLC}, - volume = 14, - pages = {629–635}, - url = {http://dx.doi.org/10.1038/s41558-024-02007-0}, - issn = {1758-6798}, - doi = {10.1038/s41558-024-02007-0}, - number = 6} - - @mastersthesis{chen2024thesis, - author = {陈亮}, - title = {臭氧氧化对颤藻及其异味物质去除的研究}, - school = {江西师范大学}, - year = {2024} - } - -@Article{wangxq2015effects, - title = {Effects of iron availability on competition between Microcystis and Pseudanabaena or Chlorella species}, - author = {Xiao-Qin Wang, Hai-Bo Jiang and Bao-Sheng Qiu}, - year = 2015, - journal = {European Journal of Phycology}, - publisher = {Taylor \& Francis}, - volume = 50, - pages = {260--270}, - url = {https://doi.org/10.1080/09670262.2015.1020516}, - number = 3, - doi = {10.1080/09670262.2015.1020516}, - eprint = {https://doi.org/10.1080/09670262.2015.1020516} -} - -@Article{herrmann2021diurnal, - title = {Diurnal Fe(II)/Fe(III) cycling and enhanced O2 production in a simulated Archean marine oxygen oasis}, - author = {Herrmann, A. J. and Sorwat, J. and Byrne, J. M. and Frankenberg-Dinkel, N. and Gehringer, M. M.}, - year = 2021, - journal = {Nature Communications}, - publisher = {Springer Science and Business Media LLC}, - volume = 12, - url = {http://dx.doi.org/10.1038/s41467-021-22258-1}, - issn = {2041-1723}, - doi = {10.1038/s41467-021-22258-1}, - number = 1} - -@Article{hu2023temperaturedependent, - title = {Temperature-Dependent Growth Characteristics and Competition of Pseudanabaena and Microcystis}, - author = {Hu, Lili and Wang, Haiyan and Cui, Jingzhen and Zou, Wansheng and Li, Jie and Shan, Kun}, - year = 2023, - journal = {Water}, - publisher = {MDPI AG}, - volume = 15, - pages = 2404, - url = {http://dx.doi.org/10.3390/w15132404}, - issn = {2073-4441}, - doi = {10.3390/w15132404}, - number = 13} - -@Article{needoba2004influence, - title = {INFLUENCE OF LOW LIGHT AND A LIGHT: DARK CYCLE ON NO3– UPTAKE, INTRACELLULAR NO3–, AND NITROGEN ISOTOPE FRACTIONATION BY MARINE PHYTOPLANKTON1}, - author = {Needoba, Joseph A. and Harrison, Paul J.}, - year = 2004, - journal = {Journal of Phycology}, - publisher = {Wiley}, - volume = 40, - pages = {505–516}, - url = {http://dx.doi.org/10.1111/j.1529-8817.2004.03171.x}, - issn = {1529-8817}, - doi = {10.1111/j.1529-8817.2004.03171.x}, - number = 3} - -@Article{taipale2020variation, - title = {Variation in ω-3 and ω-6 Polyunsaturated Fatty Acids Produced by Different Phytoplankton Taxa at Early and Late Growth Phase}, - author = {Taipale, Sami and Peltomaa, Elina and Salmi, Pauliina}, - year = 2020, - journal = {Biomolecules}, - publisher = {MDPI AG}, - volume = 10, - pages = 559, - url = {http://dx.doi.org/10.3390/biom10040559}, - issn = {2218-273X}, - doi = {10.3390/biom10040559}, - number = 4} - -@Article{bortoli2014growth, - title = {Growth and microcystin production of a Brazilian Microcystis aeruginosa strain (LTPNA 02) under different nutrient conditions}, - author = {Bortoli, Stella and Oliveira-Silva, Diogo and Krüger, Thomas and Dörr, Felipe A. and Colepicolo, Pio and Volmer, Dietrich A. and Pinto, Ernani}, - year = 2014, - journal = {Revista Brasileira de Farmacognosia}, - publisher = {Springer Science and Business Media LLC}, - volume = 24, - pages = {389–398}, - url = {http://dx.doi.org/10.1016/j.bjp.2014.07.019}, - issn = {0102-695X}, - doi = {10.1016/j.bjp.2014.07.019}, - number = 4} - -@Article{melinaceleste2017mathematical, - title = {Mathematical modeling of Microcystis aeruginosa growth and [D-Leu1] microcystin-LR production in culture media at different temperatures}, - author = {Melina Celeste, Crettaz Minaglia and Lorena, Rosso and Jorge Oswaldo, Aranda and Sandro, Goñi and Daniela, Sedan and Dario, Andrinolo and Leda, Giannuzzi}, - year = 2017, - journal = {Harmful Algae}, - publisher = {Elsevier BV}, - volume = 67, - pages = {13–25}, - url = {http://dx.doi.org/10.1016/j.hal.2017.05.006}, - issn = {1568-9883}, - doi = {10.1016/j.hal.2017.05.006} -} - -@Article{downing2005medium, - title = {Medium N:P Ratios and Specific Growth Rate ComodulateMicrocystin and Protein Content in Microcystis aeruginosa PCC7806 and M. aeruginosa UV027}, - author = {Downing, T.G. and Sember, C.S. and Gehringer, M.M. and Leukes, W.}, - year = 2005, - journal = {Microbial Ecology}, - publisher = {Springer Science and Business Media LLC}, - volume = 49, - pages = {468–473}, - url = {http://dx.doi.org/10.1007/s00248-004-0054-2}, - issn = {1432-184X}, - doi = {10.1007/s00248-004-0054-2}, - number = 3} - -@Article{kim2017effect, - title = {Effect of different concentrations and ratios of ammonium, nitrate, and phosphate on growth of the blue-green alga (cyanobacterium) Microcystis aeruginosa isolated from the Nakdong River, Korea}, - author = {Kim, Hocheol and Jo, Bok Yeon and Kim, Han Soon}, - year = 2017, - journal = {ALGAE}, - publisher = {The Korean Society of Phycology}, - volume = 32, - pages = {275–284}, - url = {http://dx.doi.org/10.4490/algae.2017.32.10.23}, - issn = {2093-0860}, - doi = {10.4490/algae.2017.32.10.23}, - number = 4} - -@Article{li2012changes, - title = {Changes in extracellular polysaccharide content and morphology of Microcystis aeruginosa at different specific growth rates}, - author = {Li, Ming and Zhu, Wei and Gao, Li and Lu, Lin}, - year = 2012, - journal = {Journal of Applied Phycology}, - publisher = {Springer Science and Business Media LLC}, - volume = 25, - pages = {1023–1030}, - url = {http://dx.doi.org/10.1007/s10811-012-9937-7}, - issn = {1573-5176}, - doi = {10.1007/s10811-012-9937-7}, - number = 4} - -@Article{kruger1977the, - title = {THE INFLUENCE OF LIGHT INTENSITY ON THE GROWTH OF DIFFERENTMICROCYSTISISOLATES}, - author = {Krüger, G. H.J. and Eloff, J. N.}, - year = 1977, - journal = {Journal of the Limnological Society of Southern Africa}, - publisher = {Informa UK Limited}, - volume = 3, - pages = {21–25}, - url = {http://dx.doi.org/10.1080/03779688.1977.9632927}, - issn = {0377-9688}, - doi = {10.1080/03779688.1977.9632927}, - number = 1} - -@Article{yang2008critical, - title = {Critical Light Intensities forMicrocystis aeruginosa, Scenedesmus quadricaudaandCyclotellasp. and Competitive Growth Patterns under Different Light:N:P Ratios}, - author = {Yang, Suwen and Jin, Xiangcan}, - year = 2008, - journal = {Journal of Freshwater Ecology}, - publisher = {Informa UK Limited}, - volume = 23, - pages = {387–396}, - url = {http://dx.doi.org/10.1080/02705060.2008.9664215}, - issn = {2156-6941}, - doi = {10.1080/02705060.2008.9664215}, - number = 3} - -@Article{islam2017growth, - title = {Growth and Photosynthetic Characteristics of Toxic and Non-Toxic Strains of the Cyanobacteria Microcystis aeruginosa and Anabaena circinalis in Relation to Light}, - author = {Islam, M. and Beardall, John}, - year = 2017, - journal = {Microorganisms}, - publisher = {MDPI AG}, - volume = 5, - pages = 45, - url = {http://dx.doi.org/10.3390/microorganisms5030045}, - issn = {2076-2607}, - doi = {10.3390/microorganisms5030045}, - number = 3} - -@Article{liu2017role, - title = {Role of illumination intensity in microcystin development using Microcystis aeruginosa as the model algae}, - author = {Liu, Hongbo and Song, Xiao and Guan, Yongnian and Pan, Ding and Li, Yanhua and Xu, Suyun and Fang, Yueying}, - year = 2017, - journal = {Environmental Science and Pollution Research}, - publisher = {Springer Science and Business Media LLC}, - volume = 24, - pages = {23261–23272}, - url = {http://dx.doi.org/10.1007/s11356-017-9888-2}, - issn = {1614-7499}, - doi = {10.1007/s11356-017-9888-2}, - number = 29} - -@Article{jahnichen2011microcystin, - title = {Microcystin production by Microcystis aeruginosa: Direct regulation by multiple environmental factors}, - author = {Jähnichen, Sabine and Long, Benedict M. and Petzoldt, Thomas}, - year = 2011, - journal = {Harmful Algae}, - publisher = {Elsevier BV}, - volume = 12, - pages = {95–104}, - url = {http://dx.doi.org/10.1016/j.hal.2011.09.002}, - issn = {1568-9883}, - doi = {10.1016/j.hal.2011.09.002} -} - -@Article{hao2022multiple, - title = {Multiple roles of bamboo as a regulator of cyanobacterial bloom in aquatic systems}, - author = {Hao, Aimin and Su, Mengyao and Kobayashi, Sohei and Zhao, Min and Iseri, Yasushi}, - year = 2022, - journal = {Scientific Reports}, - publisher = {Springer Science and Business Media LLC}, - volume = 12, - url = {http://dx.doi.org/10.1038/s41598-022-05506-2}, - issn = {2045-2322}, - doi = {10.1038/s41598-022-05506-2}, - number = 1} - -@Article{gil2023two, - title = {Two different anti-algal control mechanisms in Microcystis aeruginosa induced by robinin or tannin rich plants}, - author = {Gil, Chan Saem and Eom, Seok Hyun}, - year = 2023, - journal = {Chemosphere}, - publisher = {Elsevier BV}, - volume = 323, - pages = 138202, - url = {http://dx.doi.org/10.1016/j.chemosphere.2023.138202}, - issn = {0045-6535}, - doi = {10.1016/j.chemosphere.2023.138202} -} - -@phdthesis{wu2006thesis, - author = {吴忠兴}, - title = {我国微囊藻多样性分析及其种群优势的生理学机制研究}, - school = {中国科学院研究生院（水生生物研究所）}, - year = {2006} - } - - -@Article{graham2012freshwater, - title = {Freshwater diatoms as a source of lipids for biofuels}, - author = {Graham, James M and Graham, Linda E and Zulkifly, Shahrizim B and Pfleger, Brian F and Hoover, Spencer W and Yoshitani, Jun}, - year = 2012, - journal = {Journal of Industrial Microbiology and Biotechnology}, - publisher = {Oxford University Press (OUP)}, - volume = 39, - pages = {419–428}, - url = {http://dx.doi.org/10.1007/s10295-011-1041-5}, - issn = {1367-5435}, - doi = {10.1007/s10295-011-1041-5}, - number = 3} - -@Article{shoman2024combined, - title = {Combined effect of light and glyphosate herbicide on growth rate of marine diatom algae}, - author = {Shoman, Natalia and Solomonova, Ekaterina and Akimov, Arkady}, - year = 2024, - journal = {Ecotoxicology}, - publisher = {Springer Science and Business Media LLC}, - url = {http://dx.doi.org/10.1007/s10646-024-02759-7}, - issn = {1573-3017}, - doi = {10.1007/s10646-024-02759-7} -} - -@Article{chujo2021a, - title = {A Competitive Growth Model for the Simulation of Cyanobacterial Blooms Under Eutrophic Conditions}, - author = {Chujo, Masato and Li, Jingnan and Datta, Tania and Amano, Yoshimasa and Machida, Motoi}, - year = 2021, - journal = {Environmental Engineering Science}, - publisher = {Mary Ann Liebert Inc}, - volume = 38, - pages = {15–23}, - url = {http://dx.doi.org/10.1089/ees.2020.0056}, - issn = {1557-9018}, - doi = {10.1089/ees.2020.0056}, - number = 1} - -@Article{millie1986nutrientlimitation, - title = {Nutrient-limitation effects on the biochemical composition of Cyclotella meneghiniana (Bacillariophyta): an experimental and statistical analysis}, - author = {Millie, David F.}, - year = 1986, - journal = {Canadian Journal of Botany}, - publisher = {Canadian Science Publishing}, - volume = 64, - pages = {19–26}, - url = {http://dx.doi.org/10.1139/b86-005}, - issn = {0008-4026}, - doi = {10.1139/b86-005}, - number = 1} - -@Article{shafik1997growth, - title = {Growth ofCyclotella meneghinianaKutz. I. Effects of temperature, light and low rate of nutrient supply}, - author = {Shafik, H. M. and Herodek, S. and Vörös, L. and Présing, M. and Kiss, K. T.}, - year = 1997, - journal = {Annales de Limnologie - International Journal of Limnology}, - publisher = {EDP Sciences}, - volume = 33, - pages = {139–147}, - url = {http://dx.doi.org/10.1051/limn/1997014}, - issn = {0003-4088}, - doi = {10.1051/limn/1997014}, - number = 3} - -@Article{amano2011competition, - title = {Competition between the cyanobacterium Microcystis aeruginosa and the diatom Cyclotella sp. under nitrogen-limited condition caused by dilution in eutrophic lake}, - author = {Amano, Yoshimasa and Takahashi, Kosei and Machida, Motoi}, - year = 2011, - journal = {Journal of Applied Phycology}, - publisher = {Springer Science and Business Media LLC}, - volume = 24, - pages = {965–971}, - url = {http://dx.doi.org/10.1007/s10811-011-9718-8}, - issn = {1573-5176}, - doi = {10.1007/s10811-011-9718-8}, - number = 4} - -@Article{amano2010effect, - title = {Effect of phosphorus fluctuation caused by river water dilution in eutrophic lake on competition between blue-green alga Microcystis aeruginosa and diatom Cyclotella sp.}, - author = {Amano, Yoshimasa and Sakai, Yusuke and Sekiya, Takumi and Takeya, Kimitaka and Taki, Kazuo and Machida, Motoi}, - year = 2010, - journal = {Journal of Environmental Sciences}, - publisher = {Elsevier BV}, - volume = 22, - pages = {1666–1673}, - url = {http://dx.doi.org/10.1016/S1001-0742(09)60304-1}, - issn = {1001-0742}, - doi = {10.1016/s1001-0742(09)60304-1}, - number = 11} - -@Article{mitrovic2010growth, - title = {Growth responses of Cyclotella meneghiniana (Bacillariophyceae) to various temperatures}, - author = {Mitrovic, S. M. and Hitchcock, J. N. and Davie, A. W. and Ryan, D. A.}, - year = 2010, - journal = {Journal of Plankton Research}, - publisher = {Oxford University Press (OUP)}, - volume = 32, - pages = {1217–1221}, - url = {http://dx.doi.org/10.1093/plankt/fbq038}, - issn = {1464-3774}, - doi = {10.1093/plankt/fbq038}, - number = 8} - -@Article{beakes1988zoospore, - title = {Zoospore ultrastructure of Zygorhizidium affluens and Z. planktonicum, two chytrids parasitizing the diatom Asterionella formosa}, - author = {Beakes, Gordon W. and Canter, Hilda M. and Jaworski, George H. M.}, - year = 1988, - journal = {Canadian Journal of Botany}, - publisher = {Canadian Science Publishing}, - volume = 66, - pages = {1054–1067}, - url = {http://dx.doi.org/10.1139/b88-151}, - issn = {0008-4026}, - doi = {10.1139/b88-151}, - number = 6} - -@Article{saros2013response, - title = {Response of Cyclotella species to nutrients and incubation depth in Arctic lakes}, - author = {Saros, Jasmine E. and Strock, Kristin E. and Mccue, Joan and Hogan, Erika and Anderson, N. John}, - year = 2013, - journal = {Journal of Plankton Research}, - publisher = {Oxford University Press (OUP)}, - volume = 36, - pages = {450–460}, - url = {http://dx.doi.org/10.1093/plankt/fbt126}, - issn = {0142-7873}, - doi = {10.1093/plankt/fbt126}, - number = 2} - -@article{roubeix2008effect, - title = {Effect of salinity on growth, cell size and silicification of an euryhaline freshwater diatom: Cyclotella meneghiniana K{\"u}tz}, - author = {Roubeix, Vincent and Lancelot, Christiane}, - journal = {Transitional waters bulletin}, - volume = {2}, - number = {1}, - pages = {31--38}, - doi = {10.1285/i1825229Xv2n1p31}, - year = {2008}} - -@Article{edwards2016phytoplankton, - title = {Phytoplankton growth and the interaction of light and temperature: A synthesis at the species and community level}, - author = {Edwards, Kyle F. and Thomas, Mridul K. and Klausmeier, Christopher A. and Litchman, Elena}, - year = 2016, - journal = {Limnology and Oceanography}, - publisher = {Wiley}, - volume = 61, - pages = {1232–1244}, - url = {http://dx.doi.org/10.1002/lno.10282}, - issn = {1939-5590}, - doi = {10.1002/lno.10282}, - number = 4} - -@Article{liere1978lightlimited, - title = {Light-limited cultures of the blue-green alga Oscillatoria agardhii: With 7 figures and 3 tables in the text}, - author = {van Liere, Louis and Mur, Luuc R.}, - year = 1978, - journal = {SIL Communications, 1953-1996}, - publisher = {Informa UK Limited}, - volume = 21, - pages = {158–167}, - url = {http://dx.doi.org/10.1080/05384680.1978.11903960}, - issn = {0538-4680}, - doi = {10.1080/05384680.1978.11903960}, - number = 1} - -@Article{lindstrom1978selenium, - title = {Selenium as a micronutrient for the dinoflagellate Peridinium cinctum fa. westii: With 4 figures and 1 table in the text}, - author = {Lindström, Kåre and Rodhe, Wilhelm}, - year = 1978, - journal = {SIL Communications, 1953-1996}, - publisher = {Informa UK Limited}, - volume = 21, - pages = {168–173}, - url = {http://dx.doi.org/10.1080/05384680.1978.11903961}, - issn = {0538-4680}, - doi = {10.1080/05384680.1978.11903961}, - number = 1} - -@Article{guillard1972yellowgreen, - title = {YELLOW‐GREEN ALGAE WITH CHLOROPHYLLIDE C1,2}, - author = {Guillard, Robert R. L. and Lorenzen, Carl J.}, - year = 1972, - journal = {Journal of Phycology}, - publisher = {Wiley}, - volume = 8, - pages = {10–14}, - url = {http://dx.doi.org/10.1111/j.1529-8817.1972.tb03995.x}, - issn = {1529-8817}, - doi = {10.1111/j.1529-8817.1972.tb03995.x}, - number = 1} - -@Article{foy1980the, - title = {The role of carbohydrate accumulation in the growth of planktonicOscillatoriaspecies}, - author = {Foy, R.H. and Smith, R.V.}, - year = 1980, - journal = {British Phycological Journal}, - publisher = {Informa UK Limited}, - volume = 15, - pages = {139–150}, - url = {http://dx.doi.org/10.1080/00071618000650161}, - issn = {0007-1617}, - doi = {10.1080/00071618000650161}, - number = 2} - -@Article{foy1982photosynthetica, - title = {Photosynthetic characteristics of planktonic blue-green algae: The response of twenty strains grown under high and low light}, - author = {Foy, R.H. and Gibson, C.E.}, - year = 1982, - journal = {British Phycological Journal}, - publisher = {Informa UK Limited}, - volume = 17, - pages = {169–182}, - url = {http://dx.doi.org/10.1080/00071618200650171}, - issn = {0007-1617}, - doi = {10.1080/00071618200650171}, - number = 2} - -@Article{bolch1996isolation, - title = {Isolation and purification of Australian isolates of the toxic cyanobacteriumMicrocystis aeruginosa Kütz}, - author = {Bolch, Christopher J. S. and Blackburn, Susan I.}, - year = 1996, - journal = {Journal of Applied Phycology}, - publisher = {Springer Science and Business Media LLC}, - volume = 8, - pages = {5–13}, - url = {http://dx.doi.org/10.1007/BF02186215}, - issn = {1573-5176}, - doi = {10.1007/bf02186215}, - number = 1} - -@Article{watanabe1997extraction, - title = {Extraction of Rhodium(III) Chloro Species by Trioctylmethylammonium Chloride.}, - author = {WATANABE, Hiroshi and SUZUKI, Koshi}, - year = 1997, - journal = {Shigen-to-Sozai}, - publisher = {Mining and Materials Processing Institute of Japan}, - volume = 113, - pages = {140–144}, - url = {http://dx.doi.org/10.2473/shigentosozai.113.140}, - issn = {1880-6244}, - doi = {10.2473/shigentosozai.113.140}, - number = 2} - -@Article{staub1961ernahrungsphysiologischautokologische, - title = {Ernährungsphysiologisch-autökologische Untersuchungen an der planktischen BlaualgeOscillatoria rubescens DC.}, - author = {Staub, Robert}, - year = 1961, - journal = {Schweizerische Zeitschrift für Hydrologie}, - publisher = {Springer Science and Business Media LLC}, - volume = 23, - pages = {82–198}, - url = {http://dx.doi.org/10.1007/BF02505618}, - issn = {1420-9055}, - doi = {10.1007/bf02505618}, - number = 1} - -@article{liu2021ying, - title = {营养盐比例对硅藻水华优势种小环藻生长和生理的影响}, - journal = {环境科学研究}, - volume = 34, - number = 5, - pages = {1196-1204}, - year = 2021, - note = "", - issn = {"1001-6929"}, - doi = {10.13198/j.issn.1001-6929.2021.01.15}, - url = {https://www.hjkxyj.org.cn/article/doi/10.13198/j.issn.1001-6929.2021.01.15}, - author = {刘鑫 and 王超 and 王沛芳 and 王洵 and 马晶洁 and 胡斌} -} - -@Article{pahl2011heterotrophic, - title = {Heterotrophic growth and nutritional aspects of the diatom Cyclotella cryptica (Bacillariophyceae): effect of nitrogen source and concentration}, - author = {Pahl, Stephen L. and Lewis, David M. and King, Keith D. and Chen, Feng}, - year = 2011, - journal = {Journal of Applied Phycology}, - publisher = {Springer Science and Business Media LLC}, - volume = 24, - pages = {301–307}, - url = {http://dx.doi.org/10.1007/s10811-011-9680-5}, - issn = {1573-5176}, - doi = {10.1007/s10811-011-9680-5}, - number = 2} - -@Article{zheng2024novel, - title = {Novel order-level lineage of ammonia-oxidizing archaea widespread in marine and terrestrial environments}, - author = {Zheng, Yue and Wang, Baozhan and Gao, Ping and Yang, Yiyan and Xu, Bu and Su, Xiaoquan and Ning, Daliang and Tao, Qing and Li, Qian and Zhao, Feng and Wang, Dazhi and Zhang, Yao and Li, Meng and Winkler, Mari-K H and Ingalls, Anitra E and Zhou, Jizhong and Zhang, Chuanlun and Stahl, David A and Jiang, Jiandong and Martens-Habbena, Willm and Qin, Wei}, - year = 2024, - journal = {The ISME Journal}, - publisher = {Oxford University Press (OUP)}, - volume = 18, - url = {http://dx.doi.org/10.1093/ismejo/wrad002}, - issn = {1751-7370}, - doi = {10.1093/ismejo/wrad002}, - number = 1} - -@Article{beaver2024microbial, - title = {Microbial ecology of the deep terrestrial subsurface}, - author = {Beaver, Rachel C and Neufeld, Josh D}, - year = 2024, - journal = {The ISME Journal}, - publisher = {Oxford University Press (OUP)}, - volume = 18, - url = {http://dx.doi.org/10.1093/ismejo/wrae091}, - issn = {1751-7370}, - doi = {10.1093/ismejo/wrae091}, - number = 1} - -@Article{maire2024tissueassociated, - title = {Tissue-associated and vertically transmitted bacterial symbiont in the coral Pocillopora acuta}, - author = {Maire, Justin and Tsang Min Ching, Sarah Jane and Damjanovic, Katarina and Epstein, Hannah E and Judd, Louise M and Blackall, Linda L and van Oppen, Madeleine J H}, - year = 2024, - journal = {The ISME Journal}, - publisher = {Oxford University Press (OUP)}, - volume = 18, - url = {http://dx.doi.org/10.1093/ismejo/wrad027}, - issn = {1751-7370}, - doi = {10.1093/ismejo/wrad027}, - number = 1} - -@Article{liu2024bridging, - title = {Bridging ecological assembly process and community stability upon bacterial invasions}, - author = {Liu, Xipeng and Salles, Joana Falcão}, - year = 2024, - journal = {The ISME Journal}, - publisher = {Oxford University Press (OUP)}, - volume = 18, - url = {http://dx.doi.org/10.1093/ismejo/wrae066}, - issn = {1751-7370}, - doi = {10.1093/ismejo/wrae066}, - number = 1} - -@Article{nievesmorion2021singlecell, - title = {Single-Cell Measurements of Fixation and Intercellular Exchange of C and N in the Filaments of the Heterocyst-Forming Cyanobacterium Anabaena sp. Strain PCC 7120}, - author = {Nieves-Morión, Mercedes and Flores, Enrique and Whitehouse, Martin J. and Thomen, Aurélien and Foster, Rachel A.}, - year = 2021, - journal = {mBio}, - publisher = {American Society for Microbiology}, - volume = 12, - url = {http://dx.doi.org/10.1128/mBio.01314-21}, - issn = {2150-7511}, - doi = {10.1128/mbio.01314-21}, - number = 4, - editor = {Giovannoni, Stephen J.} -} - -@Article{gomaa2023the, - title = {The Role of Heterocysts in Cyanotoxin Production during Nitrogen Limitation}, - author = {Gomaa, Mohamed N. and Carmichael, Wayne W.}, - year = 2023, - journal = {Toxins}, - publisher = {MDPI AG}, - volume = 15, - pages = 611, - url = {http://dx.doi.org/10.3390/toxins15100611}, - issn = {2072-6651}, - doi = {10.3390/toxins15100611}, - number = 10} - -@Article{gillogly199814cmib, - title = {14C‐MIB adsorption on PAC in natural water}, - author = {Gillogly, Thomas E.T. and Snoeyink, Vernon L. and Elarde, Joseph R. and Wilson, Claude M. and Royal, Earl P.}, - year = 1998, - journal = {Journal AWWA}, - publisher = {Wiley}, - volume = 90, - pages = {98–108}, - url = {http://dx.doi.org/10.1002/j.1551-8833.1998.tb08364.x}, - issn = {1551-8833}, - doi = {10.1002/j.1551-8833.1998.tb08364.x}, - number = 1} - -@Article{luo2014a, - title = {A review on the occurrence of micropollutants in the aquatic environment and their fate and removal during wastewater treatment}, - author = {Luo, Yunlong and Guo, Wenshan and Ngo, Huu Hao and Nghiem, Long Duc and Hai, Faisal Ibney and Zhang, Jian and Liang, Shuang and Wang, Xiaochang C.}, - year = 2014, - journal = {Science of The Total Environment}, - publisher = {Elsevier BV}, - volume = {473–474}, - pages = {619–641}, - url = {http://dx.doi.org/10.1016/j.scitotenv.2013.12.065}, - issn = {0048-9697}, - doi = {10.1016/j.scitotenv.2013.12.065} -} - -@Article{xie2024fish, - title = {Fish Physiologically Based Toxicokinetic Modeling Approach for In Vitro–In Vivo and Cross-Species Extrapolation of Endocrine-Disrupting Chemicals in Risk Assessment}, - author = {Xie, Ruili and Xu, Yiping and Ma, Mei and Wang, Zijian}, - year = 2024, - journal = {Environmental Science \& Technology}, - publisher = {American Chemical Society (ACS)}, - volume = 58, - pages = {3677–3689}, - url = {http://dx.doi.org/10.1021/acs.est.3c08314}, - issn = {1520-5851}, - doi = {10.1021/acs.est.3c08314}, - number = 8} - -@Article{chen2015influences, - title = {Influences of key factors on manganese release from soil of a reservoir shore}, - author = {Chen, Lei and Zheng, Xilai and Wang, Tiejun and Zhang, Junjie}, - year = 2015, - journal = {Environmental Science and Pollution Research}, - publisher = {Springer Science and Business Media LLC}, - volume = 22, - pages = {11801–11812}, - url = {http://dx.doi.org/10.1007/s11356-015-4443-5}, - issn = {1614-7499}, - doi = {10.1007/s11356-015-4443-5}, - number = 15} - -@Article{bryant2011solving, - title = {Solving the problem at the source: Controlling Mn release at the sediment-water interface via hypolimnetic oxygenation}, - author = {Bryant, Lee D. and Hsu-Kim, Heileen and Gantzer, Paul A. and Little, John C.}, - year = 2011, - journal = {Water Research}, - publisher = {Elsevier BV}, - volume = 45, - pages = {6381–6392}, - url = {http://dx.doi.org/10.1016/j.watres.2011.09.030}, - issn = {0043-1354}, - doi = {10.1016/j.watres.2011.09.030}, - number = 19} - -@Article{hong2011acid, - title = {Acid volatile sulfides oxidation and metals (Mn, Zn) release upon sediment resuspension: Laboratory experiment and model development}, - author = {Hong, Yong Seok and Kinney, Kerry A. and Reible, Danny D.}, - year = 2011, - journal = {Environmental Toxicology and Chemistry}, - publisher = {Wiley}, - volume = 30, - pages = {564–575}, - url = {http://dx.doi.org/10.1002/etc.411}, - issn = {1552-8618}, - doi = {10.1002/etc.411}, - number = 3} - -@Article{wu2013phosphorus, - title = {Phosphorus release from lake sediments: Effects of pH, temperature and dissolved oxygen}, - author = {Wu, Yunhai and Wen, Yajun and Zhou, Jianxin and Wu, Yunying}, - year = 2013, - journal = {KSCE Journal of Civil Engineering}, - publisher = {Springer Science and Business Media LLC}, - volume = 18, - pages = {323–329}, - url = {http://dx.doi.org/10.1007/s12205-014-0192-0}, - issn = {1976-3808}, - doi = {10.1007/s12205-014-0192-0}, - number = 1} - -@Article{liu2024the, - title = {The Forms of Phosphorus in Sediments of Large Lakes (Poyang Lake) and Its Impact on Endogenous Release}, - author = {Liu, Wei and Xiao, Huoqing and Yin, Junbao and Qin, Tian and Liu, Zugen and Li, Zhiwen and Wu, Xinying and Abakumov, Evgeny and ANJUM, HANNAN AHMAD and Zhang, Meng and Zhang, Yuanyan and Wu, Daishe and Zhang, Yondong and Kong, Ming and Ma, Zhifei and He, Liang and Yan, Feng and Xie, Xianchuan}, - year = 2024, - journal = {ACS ES\&T Water}, - publisher = {American Chemical Society (ACS)}, - url = {http://dx.doi.org/10.1021/acsestwater.3c00836}, - issn = {2690-0637}, - doi = {10.1021/acsestwater.3c00836} -} - -@phdthesis{daniels2016autecology, - title = {Autecology, allelopathy and toxicity of {{\textit{Limnothrix}}} (strain AC0243): Multiple-organism studies using laboratory cultures}, - author = {Daniels, Olivia}, - year = {2016}, - school = {University Queensland, Australia} -} -@Article{westerhoff2006kinetics, - title = {Kinetics of MIB and Geosmin Oxidation during Ozonation}, - author = {Westerhoff, Paul and Nalinakumari, Brijesh and Pei, Peng}, - year = 2006, - journal = {Ozone: Science & Engineering}, - publisher = {Informa UK Limited}, - volume = 28, - pages = {277–286}, - url = {http://dx.doi.org/10.1080/01919510600892836}, - issn = {1547-6545}, - doi = {10.1080/01919510600892836}, - number = 5} - -@Article{zhou2022effect, - title = {Effect of hydraulic conditions on manganese accumulation by physical and chemical pathways in chlorinated water distribution system: A preliminary laboratory study}, - author = {Zhou, Xinyi and Nakanishi, Tomohiro and Echigo, Shinya and Kosaka, Koji and Itoh, Sadahiko}, - year = 2022, - journal = {Water Supply}, - publisher = {IWA Publishing}, - volume = 22, - pages = {7576–7589}, - url = {http://dx.doi.org/10.2166/ws.2022.338}, - issn = {1607-0798}, - doi = {10.2166/ws.2022.338}, - number = 10} - -@Article{chen2015occurance, - title = {Occurance and control of manganese in a large scale water treatment plant}, - author = {Chen, Youjun and Xiao, Feng and Liu, Yongkang and Wang, Dongsheng and Yang, Ming and Bai, Hua and Zhang, Jiong}, - year = 2015, - journal = {Frontiers of Environmental Science \& Engineering}, - publisher = {Springer Science and Business Media LLC}, - volume = 9, - pages = {66–72}, - url = {http://dx.doi.org/10.1007/s11783-014-0637-1}, - issn = {2095-221X}, - doi = {10.1007/s11783-014-0637-1}, - number = 1} - -@Article{li2024singlecell, - title = {Single-cell exploration of active phosphate-solubilizing bacteria across diverse soil matrices for sustainable phosphorus management}, - author = {Li, Hong-Zhe and Peng, Jingjing and Yang, Kai and Zhang, Yiyue and Chen, Qing-Lin and Zhu, Yong-Guan and Cui, Li}, - year = 2024, - journal = {Nature Food}, - publisher = {Springer Science and Business Media LLC}, - url = {http://dx.doi.org/10.1038/s43016-024-01024-8}, - issn = {2662-1355}, - doi = {10.1038/s43016-024-01024-8} -} - -@Article{cao2022a, - title = {A deep learning method for cyanobacterial harmful algae blooms prediction in Taihu Lake, China}, - author = {Cao, Hongye and Han, Ling and Li, Liangzhi}, - year = 2022, - journal = {Harmful Algae}, - publisher = {Elsevier BV}, - volume = 113, - pages = 102189, - url = {http://dx.doi.org/10.1016/j.hal.2022.102189}, - issn = {1568-9883}, - doi = {10.1016/j.hal.2022.102189} -} - -@Article{pyo2021cyanobacteria, - title = {Cyanobacteria cell prediction using interpretable deep learning model with observed, numerical, and sensing data assemblage}, - author = {Pyo, JongCheol and Cho, Kyung Hwa and Kim, Kyunghyun and Baek, Sang-Soo and Nam, Gibeom and Park, Sanghyun}, - year = 2021, - journal = {Water Research}, - publisher = {Elsevier BV}, - volume = 203, - pages = 117483, - url = {http://dx.doi.org/10.1016/j.watres.2021.117483}, - issn = {0043-1354}, - doi = {10.1016/j.watres.2021.117483} -} - -@Article{wu2023interpretable, - title = {Interpretable weather forecasting for worldwide stations with a unified deep model}, - author = {Wu, Haixu and Zhou, Hang and Long, Mingsheng and Wang, Jianmin}, - year = 2023, - journal = {Nature Machine Intelligence}, - publisher = {Springer Science and Business Media LLC}, - volume = 5, - pages = {602–611}, - url = {http://dx.doi.org/10.1038/s42256-023-00667-9}, - issn = {2522-5839}, - doi = {10.1038/s42256-023-00667-9}, - number = 6} - -@Article{njiru2008an, - title = {An overview of the current status of Lake Victoria fishery: Opportunities, challenges and management strategies}, - author = {Njiru, M. and Kazungu, J. and Ngugi, C. C. and Gichuki, J. and Muhoozi, L.}, - year = 2008, - journal = {Lakes & Reservoirs: Science, Policy and Management for Sustainable Use}, - publisher = {Wiley}, - volume = 13, - pages = {1–12}, - url = {http://dx.doi.org/10.1111/j.1440-1770.2007.00358.x}, - issn = {1440-1770}, - doi = {10.1111/j.1440-1770.2007.00358.x}, - number = 1} - -@Article{sitoki2012spatial, - title = {Spatial variation of phytoplankton composition, biovolume, and resulting microcystin concentrations in the Nyanza Gulf (Lake Victoria, Kenya)}, - author = {Sitoki, L. and Kurmayer, R. and Rott, E.}, - year = 2012, - journal = {Hydrobiologia}, - publisher = {Springer Science and Business Media LLC}, - volume = 691, - pages = {109–122}, - url = {http://dx.doi.org/10.1007/s10750-012-1062-8}, - issn = {1573-5117}, - doi = {10.1007/s10750-012-1062-8}, - number = 1} - -@Article{mbonde2015phytoplankton, - title = {Phytoplankton composition and microcystin concentrations in open and closed bays of Lake Victoria, Tanzania}, - author = {Mbonde, Athanasio S. and Sitoki, Lewis and Kurmayer, Rainer}, - year = 2015, - journal = {Aquatic Ecosystem Health & Management}, - publisher = {Michigan State University Press}, - volume = 18, - pages = {212–220}, - url = {http://dx.doi.org/10.1080/14634988.2015.1011030}, - issn = {1539-4077}, - doi = {10.1080/14634988.2015.1011030}, - number = 2} - -@Article{onyango2020review, - title = {Review of current state of knowledge of microcystin and its impacts on fish in Lake Victoria}, - author = {Onyango, David M. and Orina, Paul S. and Ramkat, Rose C. and Kowenje, Chrispine and Githukia, Cecilia M. and Lusweti, Dorcas and Lung’ayia, Henry B. O.}, - year = 2020, - journal = {Lakes & Reservoirs: Science, Policy and Management for Sustainable Use}, - publisher = {Wiley}, - volume = 25, - pages = {350–361}, - url = {http://dx.doi.org/10.1111/lre.12328}, - issn = {1440-1770}, - doi = {10.1111/lre.12328}, - number = 3} - -@Article{merel2013state, - title = {State of knowledge and concerns on cyanobacterial blooms and cyanotoxins}, - author = {Merel, Sylvain and Walker, David and Chicana, Ruth and Snyder, Shane and Baurès, Estelle and Thomas, Olivier}, - year = 2013, - journal = {Environment International}, - publisher = {Elsevier BV}, - volume = 59, - pages = {303–327}, - url = {http://dx.doi.org/10.1016/j.envint.2013.06.013}, - issn = {0160-4120}, - doi = {10.1016/j.envint.2013.06.013} -} - -@Article{li2019physiological, - title = {Physiological and evolutionary implications of tetrameric photosystem I in cyanobacteria}, - author = {Li, Meng and Calteau, Alexandra and Semchonok, Dmitry A. and Witt, Thomas A. and Nguyen, Jonathan T. and Sassoon, Nathalie and Boekema, Egbert J. and Whitelegge, Julian and Gugger, Muriel and Bruce, Barry D.}, - year = 2019, - journal = {Nature Plants}, - publisher = {Springer Science and Business Media LLC}, - volume = 5, - pages = {1309–1319}, - url = {http://dx.doi.org/10.1038/s41477-019-0566-x}, - issn = {2055-0278}, - doi = {10.1038/s41477-019-0566-x}, - number = 12} - -@Article{bailey2008photoprotection, - title = {Photoprotection in Cyanobacteria: Regulation of Light Harvesting†}, - author = {Bailey, Shaun and Grossman, Arthur}, - year = 2008, - journal = {Photochemistry and Photobiology}, - publisher = {Wiley}, - volume = 84, - pages = {1410–1420}, - url = {http://dx.doi.org/10.1111/j.1751-1097.2008.00453.x}, - issn = {1751-1097}, - doi = {10.1111/j.1751-1097.2008.00453.x}, - number = 6} - -@Article{awange2007the, - title = {The Falling Lake Victoria Water Level: GRACE, TRIMM and CHAMP Satellite Analysis of the Lake Basin}, - author = {Awange, Joseph L. and Sharifi, Mohammad A. and Ogonda, Godfrey and Wickert, Jens and Grafarend, Erik W. and Omulo, Monica A.}, - year = 2007, - journal = {Water Resources Management}, - publisher = {Springer Science and Business Media LLC}, - volume = 22, - pages = {775–796}, - url = {http://dx.doi.org/10.1007/s11269-007-9191-y}, - issn = {1573-1650}, - doi = {10.1007/s11269-007-9191-y}, - number = 7} - -@Article{okely2010processes, - title = {Processes affecting horizontal mixing and dispersion in Winam Gulf, Lake Victoria}, - author = {Okely, Patricia and Imberger, Jö rg and Antenucci, Jason P.}, - year = 2010, - journal = {Limnology and Oceanography}, - publisher = {Wiley}, - volume = 55, - pages = {1865–1880}, - url = {http://dx.doi.org/10.4319/lo.2010.55.5.1865}, - issn = {1939-5590}, - doi = {10.4319/lo.2010.55.5.1865}, - number = 5} - -@Article{chen2005seasonal, - title = {Seasonal dynamics of the hepatotoxic microcystins in various organs of four freshwater bivalves from the large eutrophic lake Taihu of subtropical China and the risk to human consumption}, - author = {Chen, Jun and Xie, Ping}, - year = 2005, - journal = {Environmental Toxicology}, - publisher = {Wiley}, - volume = 20, - pages = {572–584}, - url = {http://dx.doi.org/10.1002/tox.20146}, - issn = {1522-7278}, - doi = {10.1002/tox.20146}, - number = 6} - -@Article{olokotum2020a, - title = {A review of the socioecological causes and consequences of cyanobacterial blooms in Lake Victoria}, - author = {Olokotum, Mark and Mitroi, Veronica and Troussellier, Marc and Semyalo, Ronald and Bernard, Cécile and Montuelle, Bernard and Okello, William and Quiblier, Catherine and Humbert, Jean-François}, - year = 2020, - journal = {Harmful Algae}, - publisher = {Elsevier BV}, - volume = 96, - pages = 101829, - url = {http://dx.doi.org/10.1016/j.hal.2020.101829}, - issn = {1568-9883}, - doi = {10.1016/j.hal.2020.101829} -} - -@article{tan2007san, - author = {谭香 and 沈宏 and 宋立荣}, - title = {三种水华蓝藻对不同磷浓度生理响应的比较研究}, - journal = {水生生物学报}, - number = {05}, - pages = {693-699}, - year = {2007}, - issn = {1000-3207} -} - -@article{wang2013huan, - author = {王菁 and 陈家长 and 孟顺龙}, - title = {环境因素对藻类生长竞争的影响}, - journal = {中国农学通报}, - volume = {29}, - number = {17}, - pages = {52-56}, - year = {2013}, - issn = {1000-6850} -} - -@article{chen2019bu, - author = {陈洁 and 朱广伟 and 许海 and 詹旭 and 朱梦圆 and 笪文怡 and 黄亚文}, - title = {不同雨强对太湖河网区河道入湖营养盐负荷影响}, - journal = {环境科学}, - volume = {40}, - number = {11}, - pages = {4924-4931}, - year = {2019}, - issn = {0250-3301}, - doi = {10.13227/j.hjkx.201905103} -} - -@article{qin2006hu, - author = {秦伯强 and 杨柳燕 and 陈非洲 and 朱广伟 and 张路 and 陈宜瑜}, - title = {湖泊富营养化发生机制与控制技术及其应用}, - journal = {科学通报}, - number = {16}, - pages = {1857-1866}, - year = {2006}, - issn = {0023-074X} -} - -@article{yao2010tie, - author = {姚波 and 席北斗 and 胡春明 and 丁京涛 and 张靖天 and 许其功 and 刘鸿亮}, - title = {铁限制对浮游植物生长和群落组成的影响研究综述}, - journal = {生态环境学报}, - volume = {19}, - number = {02}, - pages = {459-465}, - year = {2010}, - issn = {1674-5906}, - doi = {10.16258/j.cnki.1674-5906.2010.02.028} -} - -@article{teng2016xin, - author = {滕益莉 and 王沛芳 and 任凌霄 and 王超 and 钱进 and 刘佳佳}, - title = {锌和铁对浅水湖泊中浮游植物复苏影响研究——以玄武湖为例}, - journal = {农业环境科学学报}, - volume = {35}, - number = {03}, - pages = {540-547}, - year = {2016}, - issn = {1672-2043} -} - -@article{xie2009wei, - author = {谢平}, - title = {微囊藻毒素对人类健康影响相关研究的回顾}, - journal = {湖泊科学}, - volume = {21}, - number = {05}, - pages = {603-613}, - year = {2009}, - issn = {1003-5427} -} - -@Article{nyenje2010eutrophication, - title = {Eutrophication and nutrient release in urban areas of sub-Saharan Africa — A review}, - author = {Nyenje, P.M. and Foppen, J.W. and Uhlenbrook, S. and Kulabako, R. and Muwanga, A.}, - year = 2010, - journal = {Science of The Total Environment}, - publisher = {Elsevier BV}, - volume = 408, - pages = {447–455}, - url = {http://dx.doi.org/10.1016/j.scitotenv.2009.10.020}, - issn = {0048-9697}, - doi = {10.1016/j.scitotenv.2009.10.020}, - number = 3} - -@Article{pegram1999the, - title = {The nonpoint source impacts of peri-urban settlements in South Africa: Implications for their management}, - author = {G.C. Pegram and G. Quibell and M. Hinsch}, - year = 1999, - journal = {Water Science and Technology}, - volume = 39, - pages = {283--290}, - url = {https://www.sciencedirect.com/science/article/pii/S0273122399003455}, - number = 12, - issn = {0273-1223}, - doi = {https://doi.org/10.1016/S0273-1223(99)00345-5} -} - -@Article{scheren2000estimation, - title = {Estimation of water pollution sources in Lake Victoria, East Africa: Application and elaboration of the rapid assessment methodology}, - author = {Scheren, P.A.G.M and Zanting, H.A and Lemmens, A.M.C}, - year = 2000, - journal = {Journal of Environmental Management}, - publisher = {Elsevier BV}, - volume = 58, - pages = {235–248}, - url = {http://dx.doi.org/10.1006/jema.2000.0322}, - issn = {0301-4797}, - doi = {10.1006/jema.2000.0322}, - number = 4} - -@Article{silsbe2006variability, - title = {Variability of chlorophyll a and photosynthetic parameters in a nutrient-saturated tropical great lake}, - author = {Silsbe, G. M. and Hecky, R. E. and Guildford, S. J. and Mugidde, R.}, - year = 2006, - journal = {Limnology and Oceanography}, - publisher = {Wiley}, - volume = 51, - pages = {2052–2063}, - url = {http://dx.doi.org/10.4319/lo.2006.51.5.2052}, - issn = {0024-3590}, - doi = {10.4319/lo.2006.51.5.2052}, - number = 5 -} - -@article{chen2017water, - title={Water Quality Investigation in Major Cities of Tanzania-Rivers, Lakes and Drinking Water Sources}, - author={Chen, SS and Shen, QS and Kimirei, IA}, - journal={Work}, - year={2017} -} - -@article{xu2019shui, - author = {许海 and 陈洁 and 朱广伟 and 秦伯强 and 张运林}, - title = {水体氮、磷营养盐水平对蓝藻优势形成的影响}, - journal = {湖泊科学}, - volume = {31}, - number = {05}, - pages = {1239-1247}, - year = {2019}, - issn = {1003-5427} -} - -@book{chorus2001cyanotoxins, - title = {Cyanotoxins: Occurrence, Causes, Consequences}, - editor = {Ingrid Chorus}, - year = {2001}, - publisher = {Springer-Verlag Berlin Heidelberg}, - address = {Berlin, Heidelberg}, - isbn = {978-3-642-64004-9}, - doi = {10.1007/978-3-642-59514-1}, - url = {https://doi.org/10.1007/978-3-642-59514-1}, - edition = {1}, - pages = {XVIII, 357}, - eisbn = {978-3-642-59514-1}, - keywords = {Microbiology, Ecotoxicology}, - note = {Published: 18 September 2011 (Softcover), 06 December 2012 (eBook)} -} - -@article{macintyre2014stratification, - title={Stratification and horizontal exchange in Lake Victoria, East Africa}, - author={Sally Macintyre and Jos{\'e} R. Romero and Greg M. Silsbe and Brian M. Emery}, - journal={Limnology and Oceanography}, - year={2014}, - volume={59}, - url={https://api.semanticscholar.org/CorpusID:86012782} -} -@InBook{fairbridge2012stratification, - title = {Stratification and Mixing in Tropical African Lakes}, - author = {Fairbridge, Rhodes W. and Jönsson, Lennart and Håkanson, Lars and White, W. Rodney and Mikos, Matjaz and Herschy, Reginald W. and García-Rodríguez, Felipe and Fairbridge, Rhodes W. and Bengtsson, Lars and MacIntyre, Sally and Huttula, Timo and Blindow, Irmgard and Hargeby, Anders and Weyer, Klaus and Lemmin, Ulrich and Elçi, Şebnem and Larson, Magnus and Håkanson, Lars}, - year = 2012, - booktitle = {Encyclopedia of Lakes and Reservoirs}, - publisher = {Springer Netherlands}, - pages = {737–743}, - url = {http://dx.doi.org/10.1007/978-1-4020-4410-6_262}, - isbn = 9781402044106, - issn = {1388-4360}, - doi = {10.1007/978-1-4020-4410-6_262} -} - -@InBook{macintyre2012stratification, - title = {Stratification and Mixing in Tropical African Lakes}, - author = {MacIntyre, Sally}, - year = 2012, - booktitle = {Encyclopedia of Lakes and Reservoirs}, - publisher = {Springer Netherlands}, - pages = {737--743}, - url = {https://doi.org/10.1007/978-1-4020-4410-6_262}, - editor = {Bengtsson, Lars and Herschy, Reginald W. and Fairbridge, Rhodes W.}, - address = {Dordrecht}, - isbn = {978-1-4020-4410-6}, - doi = {10.1007/978-1-4020-4410-6_262} -} - -@Article{wang2024stochastic, - title = {Stochastic processes driving cyanobacterial temporal succession in response to typhoons in a coastal reservoir}, - author = {Wang, Yajun and Cao, Tianzheng and Liu, Qingqing and Xuan, Boyu and Mu, Zhengyuan and Zhao, Jian}, - year = 2024, - journal = {Water Research}, - publisher = {Elsevier BV}, - volume = 267, - pages = 122480, - url = {http://dx.doi.org/10.1016/j.watres.2024.122480}, - issn = {0043-1354}, - doi = {10.1016/j.watres.2024.122480} -} - -@Article{mao2024temperature, - title = {Temperature differentially regulates estuarine microbial N2O production along a salinity gradient}, - author = {Mao, Tie-Qiang and Zhang, Yong and Ou, Ya-Fei and Li, Xiao-Fei and Zheng, Yan-Ling and Liang, Xia and Liu, Min and Hou, Li-Jun and Dong, Hong-Po}, - year = 2024, - journal = {Water Research}, - publisher = {Elsevier BV}, - volume = 267, - pages = 122454, - url = {http://dx.doi.org/10.1016/j.watres.2024.122454}, - issn = {0043-1354}, - doi = {10.1016/j.watres.2024.122454} -} - -@Article{xu2020improving, - title = {Improving the treatment of waste activated sludge using calcium peroxide}, - author = {Xu, Qiuxiang and Huang, Qi-Su and Wei, Wei and Sun, Jing and Dai, Xiaohu and Ni, Bing-Jie}, - year = 2020, - journal = {Water Research}, - publisher = {Elsevier BV}, - volume = 187, - pages = 116440, - url = {http://dx.doi.org/10.1016/j.watres.2020.116440}, - issn = {0043-1354}, - doi = {10.1016/j.watres.2020.116440} -} - -@Article{fang2024mitigating, - title = {Mitigating harmful cyanobacterial blooms in drinking water reservoirs through in-situ sediment resuspension}, - author = {Fang, Jiao and Li, Yande and Su, Ming and Cao, Tengxin and Sun, Xufeng and Ai, Yufan and Qin, Jinyi and Yu, Jianwei and Yang, Min}, - year = 2024, - journal = {Water Research}, - publisher = {Elsevier BV}, - volume = 267, - pages = 122509, - url = {http://dx.doi.org/10.1016/j.watres.2024.122509}, - issn = {0043-1354}, - doi = {10.1016/j.watres.2024.122509} -} - -@Article{graham2017a, - title = {A penalty on photosynthetic growth in fluctuating light}, - author = {Graham, Percival J. and Nguyen, Brian and Burdyny, Thomas and Sinton, David}, - year = 2017, - journal = {Scientific Reports}, - publisher = {Springer Science and Business Media LLC}, - volume = 7, - url = {http://dx.doi.org/10.1038/s41598-017-12923-1}, - issn = {2045-2322}, - doi = {10.1038/s41598-017-12923-1}, - number = 1} - -@Article{wang2022chromatic, - title = {Chromatic Acclimation Processes and Their Relationships with Phycobiliprotein Complexes}, - author = {Wang, Fanyue and Chen, Min}, - year = 2022, - journal = {Microorganisms}, - publisher = {MDPI AG}, - volume = 10, - pages = 1562, - url = {http://dx.doi.org/10.3390/microorganisms10081562}, - issn = {2076-2607}, - doi = {10.3390/microorganisms10081562}, - number = 8} - -@Article{thompson2011transcriptome, - title = {Transcriptome response of high- and low-light-adapted Prochlorococcus strains to changing iron availability}, - author = {Thompson, Anne W and Huang, Katherine and Saito, Mak A and Chisholm, Sallie W}, - year = 2011, - journal = {The ISME Journal}, - publisher = {Oxford University Press (OUP)}, - volume = 5, - pages = {1580–1594}, - url = {http://dx.doi.org/10.1038/ismej.2011.49}, - issn = {1751-7370}, - doi = {10.1038/ismej.2011.49}, - number = 10} - -@Article{bolger2014trimmomatic, - title = {Trimmomatic: a flexible trimmer for Illumina sequence data}, - author = {Bolger, Anthony M. and Lohse, Marc and Usadel, Bjoern}, - year = 2014, - journal = {Bioinformatics}, - publisher = {Oxford University Press (OUP)}, - volume = 30, - pages = {2114–2120}, - url = {http://dx.doi.org/10.1093/bioinformatics/btu170}, - issn = {1367-4803}, - doi = {10.1093/bioinformatics/btu170}, - number = 15} - -@Article{kopylova2012sortmerna, - title = {SortMeRNA: fast and accurate filtering of ribosomal RNAs in metatranscriptomic data}, - author = {Kopylova, Evguenia and Noé, Laurent and Touzet, Hélène}, - year = 2012, - journal = {Bioinformatics}, - publisher = {Oxford University Press (OUP)}, - volume = 28, - pages = {3211–3217}, - url = {http://dx.doi.org/10.1093/bioinformatics/bts611}, - issn = {1367-4803}, - doi = {10.1093/bioinformatics/bts611}, - number = 24} - -@Article{kanehisa2007kegg, - title = {KEGG for linking genomes to life and the environment}, - author = {Kanehisa, M. and Araki, M. and Goto, S. and Hattori, M. and Hirakawa, M. and Itoh, M. and Katayama, T. and Kawashima, S. and Okuda, S. and Tokimatsu, T. and Yamanishi, Y.}, - year = 2007, - journal = {Nucleic Acids Research}, - publisher = {Oxford University Press (OUP)}, - volume = 36, - pages = {D480–D484}, - url = {http://dx.doi.org/10.1093/nar/gkm882}, - issn = {1362-4962}, - doi = {10.1093/nar/gkm882}, - number = {Database} -} - -@Article{anders2010differential, - title = {Differential expression analysis for sequence count data}, - author = {Anders, Simon and Huber, Wolfgang}, - year = 2010, - journal = {Nature Precedings}, - publisher = {Springer Science and Business Media LLC}, - url = {http://dx.doi.org/10.1038/npre.2010.4282.2}, - issn = {1756-0357}, - doi = {10.1038/npre.2010.4282.2} -} - -@Article{yu2012clusterprofiler, - title = {clusterProfiler: an R Package for Comparing Biological Themes Among Gene Clusters}, - author = {Yu, Guangchuang and Wang, Li-Gen and Han, Yanyan and He, Qing-Yu}, - year = 2012, - journal = {OMICS: A Journal of Integrative Biology}, - publisher = {Mary Ann Liebert Inc}, - volume = 16, - pages = {284–287}, - url = {http://dx.doi.org/10.1089/omi.2011.0118}, - issn = {1557-8100}, - doi = {10.1089/omi.2011.0118}, - number = 5} - -@Article{sanfilippo2019interplay, - title = {Interplay between differentially expressed enzymes contributes to light color acclimation in marine Synechococcus}, - author = {Sanfilippo, Joseph E. and Nguyen, Adam A. and Garczarek, Laurence and Karty, Jonathan A. and Pokhrel, Suman and Strnat, Johann A. and Partensky, Frédéric and Schluchter, Wendy M. and Kehoe, David M.}, - year = 2019, - journal = {Proceedings of the National Academy of Sciences}, - publisher = {Proceedings of the National Academy of Sciences}, - volume = 116, - pages = {6457–6462}, - url = {http://dx.doi.org/10.1073/pnas.1810491116}, - issn = {1091-6490}, - doi = {10.1073/pnas.1810491116}, - number = 13} - -@Article{khan2019a, - title = {A comparative study of phycobilliprotein production in two strains of Pseudanabaena isolated from Arctic and tropical regions in relation to different light wavelengths and photoperiods}, - author = {Khan, Zoya and Wan Maznah, W.O. and Faradina Merican, M.S.M. and Convey, Peter and Najimudin, Nazalan and Alias, Siti Aisyah}, - year = 2019, - journal = {Polar Science}, - publisher = {Elsevier BV}, - volume = 20, - pages = {3–8}, - url = {http://dx.doi.org/10.1016/j.polar.2018.10.002}, - issn = {1873-9652}, - doi = {10.1016/j.polar.2018.10.002} -} - -@Article{park2019contrasting, - title = {Contrasting effects of monochromatic LED lighting on growth, pigments and photosynthesis in the commercially important cyanobacterium Arthrospira maxima}, - author = {Park, Jihae and Dinh, Thai Binh}, - year = 2019, - journal = {Bioresource Technology}, - publisher = {Elsevier BV}, - volume = 291, - pages = 121846, - url = {http://dx.doi.org/10.1016/j.biortech.2019.121846}, - issn = {0960-8524}, - doi = {10.1016/j.biortech.2019.121846} -} - -@Article{klepaczsmolka2020effect, - title = {Effect of light colour and photoperiod on biomass growth and phycocyanin production by Synechococcus PCC 6715}, - author = {Klepacz-Smółka, Anna and Pietrzyk, Damian and Szeląg, Rafał and Głuszcz, Paweł and Daroch, Maurycy and Tang, Jie and Ledakowicz, Stanisław}, - year = 2020, - journal = {Bioresource Technology}, - publisher = {Elsevier BV}, - volume = 313, - pages = 123700, - url = {http://dx.doi.org/10.1016/j.biortech.2020.123700}, - issn = {0960-8524}, - doi = {10.1016/j.biortech.2020.123700} -} - -@Article{quail1995phytochromes, - title = {Phytochromes: Photosensory Perception and Signal Transduction}, - author = {Quail, Peter H. and Boylan, Margaret T. and Parks, Brian M. and Short, Timothy W. and Xu, Yong and Wagner, Doris}, - year = 1995, - journal = {Science}, - publisher = {American Association for the Advancement of Science (AAAS)}, - volume = 268, - pages = {675–680}, - url = {http://dx.doi.org/10.1126/science.7732376}, - issn = {1095-9203}, - doi = {10.1126/science.7732376}, - number = 5211} - -@Article{nagae2024greenred, - title = {Green/red light-sensing mechanism in the chromatic acclimation photosensor}, - author = {Nagae, Takayuki and Fujita, Yuya and Tsuchida, Tatsuya and Kamo, Takanari and Seto, Ryoka and Hamada, Masako and Aoyama, Hiroshi and Sato-Tomita, Ayana and Fujisawa, Tomotsumi and Eki, Toshihiko and Miyanoiri, Yohei and Ito, Yutaka and Soeta, Takahiro and Ukaji, Yutaka and Unno, Masashi and Mishima, Masaki and Hirose, Yuu}, - year = 2024, - journal = {Science Advances}, - publisher = {American Association for the Advancement of Science (AAAS)}, - volume = 10, - url = {http://dx.doi.org/10.1126/sciadv.adn8386}, - issn = {2375-2548}, - doi = {10.1126/sciadv.adn8386}, - number = 24} - -@Article{bussell2013control, - title = {Control of a four-color sensing photoreceptor by a two-color sensing photoreceptor reveals complex light regulation in cyanobacteria}, - author = {Bussell, Adam N. and Kehoe, David M.}, - year = 2013, - journal = {Proceedings of the National Academy of Sciences}, - publisher = {Proceedings of the National Academy of Sciences}, - volume = 110, - pages = {12834–12839}, - url = {http://dx.doi.org/10.1073/pnas.1303371110}, - issn = {1091-6490}, - doi = {10.1073/pnas.1303371110}, - number = 31 -} - -@article{qiu2000shuang, - author = {邱全胜}, - title = {双组分系统——细胞识别渗透胁迫信号的感应器}, - journal = {生物化学与生物物理进展}, - number = {06}, - pages = {593-596}, - year = {2000}, - issn = {1000-3282} -} - -@Article{yeh1997a, - title = {A Cyanobacterial Phytochrome Two-Component Light Sensory System}, - author = {Yeh, Kuo-Chen and Wu, Shu-Hsing and Murphy, John T. and Lagarias, J. Clark}, - year = 1997, - journal = {Science}, - publisher = {American Association for the Advancement of Science (AAAS)}, - volume = 277, - pages = {1505–1508}, - url = {http://dx.doi.org/10.1126/science.277.5331.1505}, - issn = {1095-9203}, - doi = {10.1126/science.277.5331.1505}, - number = 5331} - -@Article{smith2017dont, - title = {Don’t ignore the green light: exploring diverse roles in plant processes}, - author = {Smith, Hayley L. and McAusland, Lorna and Murchie, Erik H.}, - year = 2017, - journal = {Journal of Experimental Botany}, - publisher = {Oxford University Press (OUP)}, - volume = 68, - pages = {2099–2110}, - url = {http://dx.doi.org/10.1093/jxb/erx098}, - issn = {1460-2431}, - doi = {10.1093/jxb/erx098}, - number = 9} - -@Article{hotos2022the, - title = {The Effect of Colored and White Light on Growth and Phycobiliproteins, Chlorophyll and Carotenoids Content of the Marine Cyanobacteria Phormidium sp. and Cyanothece sp. in Batch Cultures}, - author = {Hotos, George N. and Antoniadis, Theodoros I.}, - year = 2022, - journal = {Life}, - publisher = {MDPI AG}, - volume = 12, - pages = 837, - url = {http://dx.doi.org/10.3390/life12060837}, - issn = {2075-1729}, - doi = {10.3390/life12060837}, - number = 6} - -@Article{dayarathne2024the, - title = {The effect of light availability and light wavelength on growth, 2-MIB biosynthesis, and 2-MIB-related gene expression in Pseudanabaena foetida var. intermedia}, - author = {Dayarathne, Kaushalya and Ishikawa, Toshiki and Kadeer, Aikeranmu and Yamaguchi, Masatoshi and Kawai-Yamada, Maki}, - year = 2024, - journal = {Archives of Microbiology}, - publisher = {Springer Science and Business Media LLC}, - volume = 206, - url = {http://dx.doi.org/10.1007/s00203-024-04099-w}, - issn = {1432-072X}, - doi = {10.1007/s00203-024-04099-w}, - number = 9} - -@Article{grabherr2011fulllength, - title = {Full-length transcriptome assembly from RNA-Seq data without a reference genome}, - author = {Grabherr, Manfred G and Haas, Brian J and Yassour, Moran and Levin, Joshua Z and Thompson, Dawn A and Amit, Ido and Adiconis, Xian and Fan, Lin and Raychowdhury, Raktima and Zeng, Qiandong and Chen, Zehua and Mauceli, Evan and Hacohen, Nir and Gnirke, Andreas and Rhind, Nicholas and di Palma, Federica and Birren, Bruce W and Nusbaum, Chad and Lindblad-Toh, Kerstin and Friedman, Nir and Regev, Aviv}, - year = 2011, - journal = {Nature Biotechnology}, - publisher = {Springer Science and Business Media LLC}, - volume = 29, - pages = {644–652}, - url = {http://dx.doi.org/10.1038/nbt.1883}, - issn = {1546-1696}, - doi = {10.1038/nbt.1883}, - number = 7} - -@Article{dai2024regulation, - title = {Regulation of freshwater filamentous green algae (Cladophora) and its impact on malodorous volatile organic sulfur compound (DMS) by biomanipulation}, - author = {Dai, Yutai and Lin, Yu and Deng, Ping and Chen, Jiping and Li, Weijie and Gao, Qiang and Shen, Hong and Peng, Qiutong and Chen, Mo and Deng, Xuwei}, - year = 2024, - journal = {Science of The Total Environment}, - publisher = {Elsevier BV}, - pages = 176856, - url = {http://dx.doi.org/10.1016/j.scitotenv.2024.176856}, - issn = {0048-9697}, - doi = {10.1016/j.scitotenv.2024.176856} -} - -@Article{pfennig2024shedding, - title = {Shedding light on blue-green photosynthesis: A wavelength-dependent mathematical model of photosynthesis in Synechocystis sp. PCC 6803}, - author = {Pfennig, Tobias and Kullmann, Elena and Zavřel, Tomáš and Nakielski, Andreas and Ebenhöh, Oliver and Červený, Jan and Bernát, Gábor and Matuszyńska, Anna Barbara}, - year = 2024, - journal = {PLOS Computational Biology}, - publisher = {Public Library of Science (PLoS)}, - volume = 20, - pages = {e1012445}, - url = {http://dx.doi.org/10.1371/journal.pcbi.1012445}, - issn = {1553-7358}, - doi = {10.1371/journal.pcbi.1012445}, - number = 9, - editor = {Lea-Smith, David} -} - -@Article{cen2023decoding, - title = {Decoding algae under abnormal temperature variability with odorant as a responsive indicator}, - author = {Cen, Cheng and Zhang, Kejia and Zhang, Tuqiao and Zheng, Yingying and Zhou, Peixuan and Lai, Haolin}, - year = 2023, - journal = {Science of The Total Environment}, - publisher = {Elsevier BV}, - volume = 881, - pages = 163390, - url = {http://dx.doi.org/10.1016/j.scitotenv.2023.163390}, - issn = {0048-9697}, - doi = {10.1016/j.scitotenv.2023.163390} -} - -@Article{huang2024integration, - title = {Integration of nontarget analysis with machine learning modeling for prioritization of odorous volatile organic compounds in surface water}, - author = {Huang, Yuanxi and Bu, Lingjun and Zhu, Shumin and Zhou, Shiqing}, - year = 2024, - journal = {Journal of Hazardous Materials}, - publisher = {Elsevier BV}, - volume = 471, - pages = 134367, - url = {http://dx.doi.org/10.1016/j.jhazmat.2024.134367}, - issn = {0304-3894}, - doi = {10.1016/j.jhazmat.2024.134367} -} - -@Article{shi2024hydrogen, - title = {Hydrogen generated by electrochemical water splitting as electron donor for nitrate removal from micro-polluted reservoir water}, - author = {Shi, Xinxin and Ma, Zhuolin and Evlashin, Stanislav A. and Fedorov, Fedor S. and Shi, Julian and Liu, Yang and Zhu, Weihuang and Guo, Pengfei and Huang, Tinglin and Wen, Gang}, - year = 2024, - journal = {Journal of Hazardous Materials}, - publisher = {Elsevier BV}, - volume = 480, - pages = 135964, - url = {http://dx.doi.org/10.1016/j.jhazmat.2024.135964}, - issn = {0304-3894}, - doi = {10.1016/j.jhazmat.2024.135964} -} - -@Article{su2019stoichiometric, - title = {Stoichiometric mechanisms of regime shifts in freshwater ecosystem}, - author = {Su, Haojie and Wu, Yao and Xia, Wulai and Yang, Lei and Chen, Jianfeng and Han, Wenxuan and Fang, Jingyun and Xie, Ping}, - year = 2019, - journal = {Water Research}, - publisher = {Elsevier BV}, - volume = 149, - pages = {302–310}, - url = {http://dx.doi.org/10.1016/j.watres.2018.11.024}, - issn = {0043-1354}, - doi = {10.1016/j.watres.2018.11.024} -} - -@Article{zhu2024optimizing, - title = {Optimizing UVA and UVC synergy for effective control of harmful cyanobacterial blooms}, - author = {Zhu, Yinjie and Ding, Jian and Wang, Xiaoxiong and Wang, Xuejian and Cao, Huansheng and Teng, Fei and Yao, Shishi and Lin, Zhiru and Jiang, Yuelu and Tao, Yi}, - year = 2024, - journal = {Environmental Science and Ecotechnology}, - publisher = {Elsevier BV}, - volume = 22, - pages = 100455, - url = {http://dx.doi.org/10.1016/j.ese.2024.100455}, - issn = {2666-4984}, - doi = {10.1016/j.ese.2024.100455} -} - -@Article{zhu2024insitu, - title = {In-Situ Algal Control by Two-stage Nanobubble Technology in Taihu Lake: Efficacy and Ecological Impact}, - author = {Zhu, Lina and Li, Pan and Wang, Chunrong and Hu, Jun and Zhang, Lijuan and Li, Jixiang}, - year = 2024, - journal = {Environmental Research}, - publisher = {Elsevier BV}, - pages = 120077, - url = {http://dx.doi.org/10.1016/j.envres.2024.120077}, - issn = {0013-9351}, - doi = {10.1016/j.envres.2024.120077} -} - -@Article{huang2019cyanobacterial, - title = {Cyanobacterial bioactive metabolites—A review of their chemistry and biology}, - author = {Huang, I-Shuo and Zimba, Paul V.}, - year = 2019, - journal = {Harmful Algae}, - publisher = {Elsevier BV}, - volume = 86, - pages = {139–209}, - url = {http://dx.doi.org/10.1016/j.hal.2019.05.001}, - issn = {1568-9883}, - doi = {10.1016/j.hal.2019.05.001} -} - -@Article{li2024reservoir, - title = {Reservoir regulation-induced variations in water level impacts cyanobacterial bloom by the changing physiochemical conditions}, - author = {Li, Yuan and Fang, Lingchao and Cao, Guangrong and Mi, Wujuan and Lei, Cheyenne and Zhu, Kai and Bi, Yonghong}, - year = 2024, - journal = {Water Research}, - publisher = {Elsevier BV}, - volume = 259, - pages = 121836, - url = {http://dx.doi.org/10.1016/j.watres.2024.121836}, - issn = {0043-1354}, - doi = {10.1016/j.watres.2024.121836} -} - -@Article{smucker2021increasingly, - title = {Increasingly severe cyanobacterial blooms and deep water hypoxia coincide with warming water temperatures in reservoirs}, - author = {Smucker, Nathan J. and Beaulieu, Jake J. and Nietch, Christopher T. and Young, Jade L.}, - year = 2021, - journal = {Global Change Biology}, - publisher = {Wiley}, - volume = 27, - pages = {2507–2519}, - url = {http://dx.doi.org/10.1111/gcb.15618}, - issn = {1365-2486}, - doi = {10.1111/gcb.15618}, - number = 11} - -@Article{zhang2024ignored, - title = {Ignored microbial-induced taste and odor in drinking water reservoirs: Novel insight into actinobacterial community structure, assembly, and odor-producing potential}, - author = {Zhang, Haihan and Ni, Tongchao and Liu, Xiang and Ma, Ben and Huang, Tinglin and Zhao, Daijuan and Li, Haiyun and Chen, Kaige and Liu, Tao}, - year = 2024, - journal = {Water Research}, - publisher = {Elsevier BV}, - volume = 264, - pages = 122219, - url = {http://dx.doi.org/10.1016/j.watres.2024.122219}, - issn = {0043-1354}, - doi = {10.1016/j.watres.2024.122219} -} - -@Article{xiao2024outbreak, - title = {Outbreak of 2-methylisoborneol in a drinking water reservoir attributed to the cyanobacterium Pseudanabaena sp.}, - author = {Xiao, Man and Wei, Yanzhang and Zheng, Danping and Shi, Liandong and Huang, Changchun and Wang, Yang and Zhu, Guangwei}, - year = 2024, - journal = {Journal of Oceanology and Limnology}, - publisher = {Springer Science and Business Media LLC}, - url = {http://dx.doi.org/10.1007/s00343-024-4034-8}, - issn = {2523-3521}, - doi = {10.1007/s00343-024-4034-8} -} - -@Article{ishikawaishiwata2023will, - title = {Will Planktothrix spp. become dominant again in Lake Kasumigaura? Analysis of phytoplankton community dynamics}, - author = {Ishikawa-Ishiwata, Yuki and Nagahama, Yumi and Kitamura, Tatsumi and Yuzawa, Miyuki}, - year = 2023, - journal = {Hydrobiologia}, - publisher = {Springer Science and Business Media LLC}, - volume = 850, - pages = {1849–1867}, - url = {http://dx.doi.org/10.1007/s10750-023-05196-5}, - issn = {1573-5117}, - doi = {10.1007/s10750-023-05196-5}, - number = 8} - -@Article{chen2018spatialtemporal, - title = {Spatial–temporal distribution and limiting factor variation of algal growth: three-dimensional simulation to enhance drinking water reservoir management}, - author = {Chen, L. and Zhang, P. and Lv, G. P. and Shen, Z. Y.}, - year = 2018, - journal = {International Journal of Environmental Science and Technology}, - publisher = {Springer Science and Business Media LLC}, - volume = 16, - pages = {7417–7432}, - url = {http://dx.doi.org/10.1007/s13762-018-2113-0}, - issn = {1735-2630}, - doi = {10.1007/s13762-018-2113-0}, - number = 11} - -@Article{shin2021investigating, - title = {Investigating distribution of nitrate concentration using ensemble nonparametric quantile regression}, - author = {Shin, Joonho and You, Hojun and Kaown, Dugin and Koh, Eun-Hee and Lee, Sanghoon and Lim, Chae Young and Lee, Kang-Kun}, - year = 2021, - journal = {Science of The Total Environment}, - publisher = {Elsevier BV}, - volume = 777, - pages = 146098, - url = {http://dx.doi.org/10.1016/j.scitotenv.2021.146098}, - issn = {0048-9697}, - doi = {10.1016/j.scitotenv.2021.146098} -} - -@Article{park2024effect, - title = {Effect of Culture Temperature on 2-Methylisoborneol Production and Gene Expression in Two Strains of Pseudanabaena sp.}, - author = {Park, Rumi and Yu, Mi-Na and Park, Ji-Hyun and Kang, Taegu and Lee, Jung-Eun}, - year = 2024, - journal = {Cells}, - publisher = {MDPI AG}, - volume = 13, - pages = 1386, - url = {http://dx.doi.org/10.3390/cells13161386}, - issn = {2073-4409}, - doi = {10.3390/cells13161386}, - number = 16} - -@Article{zhao2024seasonal, - title = {Seasonal Rise in the Contents of Microcystin-LR and Odorous Substances Due to Cyanobacterial Blooms in a Drinking Water Reservoir Supplying Xinyang City, China}, - author = {Zhao, Wei and Liu, Yang and Li, Hua and Ma, Junguo and Li, Xiaoyu}, - year = 2024, - journal = {Toxins}, - publisher = {MDPI AG}, - volume = 16, - pages = 448, - url = {http://dx.doi.org/10.3390/toxins16100448}, - issn = {2072-6651}, - doi = {10.3390/toxins16100448}, - number = 10} - -@Article{luo2022insights, - title = {Insights into the Seasonal Olfactory Mechanism of Geosmin in Raw Water of Huangpu River}, - author = {Luo, Fei and Chen, Hui and Wu, Xiaoxin and Liu, Lili and Chen, Yuean and Wang, Zhiping}, - year = 2022, - journal = {Toxics}, - publisher = {MDPI AG}, - volume = 10, - pages = 485, - url = {http://dx.doi.org/10.3390/toxics10080485}, - issn = {2305-6304}, - doi = {10.3390/toxics10080485}, - number = 8} - -@Article{zhang2023actinobacteria, - title = {Actinobacteria produce taste and odor in drinking water reservoir: Community composition dynamics, co-occurrence and inactivation models}, - author = {Zhang, Haihan and Zhao, Daijuan and Ma, Manli and Huang, Tinglin and Li, Haiyun and Ni, Tongchao and Liu, Xiang and Ma, Ben and Zhang, Yinbin and Li, Xuan and Lei, Xiaohui and Jin, Yaofeng}, - year = 2023, - journal = {Journal of Hazardous Materials}, - publisher = {Elsevier BV}, - volume = 453, - pages = 131429, - url = {http://dx.doi.org/10.1016/j.jhazmat.2023.131429}, - issn = {0304-3894}, - doi = {10.1016/j.jhazmat.2023.131429} -} - -@Article{carratal`a2023vertical, - title = {Vertical distribution and seasonal dynamics of planktonic cyanobacteria communities in a water column of deep mesotrophic Lake Geneva}, - author = {Carratalà, Anna and Chappelier, Coralie and Selmoni, Oliver and Guillaume, Annie S. and Chmiel, Hannah E. and Pasche, Natacha and Weil, Charlotte and Kohn, Tamar and Joost, Stéphane}, - year = 2023, - journal = {Frontiers in Microbiology}, - publisher = {Frontiers Media SA}, - volume = 14, - url = {http://dx.doi.org/10.3389/fmicb.2023.1295193}, - issn = {1664-302X}, - doi = {10.3389/fmicb.2023.1295193} -} - -@Article{kim2024assessing, - title = {Assessing the Impact of Weirs on Water Quality and Phytoplankton Dynamics in the South Han River: A Two-Year Study}, - author = {Kim, Young-Hyo and Cho, In-Hwan and Kim, Ha-Kyung and Hwang, Eun-A and Han, Byung-Hun and Kim, Baik-Ho}, - year = 2024, - journal = {Water}, - publisher = {MDPI AG}, - volume = 16, - pages = 833, - url = {http://dx.doi.org/10.3390/w16060833}, - issn = {2073-4441}, - doi = {10.3390/w16060833}, - number = 6} - -@Article{cen2024algal, - title = {Algal odorous risk assessments in pilot-scale drinking water distribution system (DWDS): Risk occurrence, influencing factors and degradation patterns}, - author = {Cen, Cheng and Zhang, Kejia and Zhang, Tuqiao and Wu, Jiajia and Zhou, Peixuan and Mao, Xinwei}, - year = 2024, - journal = {Journal of Cleaner Production}, - publisher = {Elsevier BV}, - volume = 469, - pages = 143155, - url = {http://dx.doi.org/10.1016/j.jclepro.2024.143155}, - issn = {0959-6526}, - doi = {10.1016/j.jclepro.2024.143155} -} - diff --git a/MS/SM.aux b/MS/SM.aux index 95261f7..1b6530f 100644 --- a/MS/SM.aux +++ b/MS/SM.aux @@ -1,6 +1,5 @@ \relax \providecommand\zref@newlabel[2]{} -\providecommand*\new@tpo@label[2]{} \providecommand \babel@aux [2]{\global \let \babel@toc \@gobbletwo } \@nameuse{bbl@beforestart} \providecommand\hyper@newdestlabel[2]{} @@ -8,7 +7,5 @@ \HyPL@Entry{0<>} \babel@aux{english}{} \@writefile{lost}{\contentsline {sfg}{\numberline {1}{\ignorespaces Caption of demo figure}}{3}{sfg.1}\protected@file@percent } -\providecommand*\caption@xref[2]{\@setref\relax\@undefined{#1}} \newlabel{sfg-demo}{{1}{3}{Caption of demo figure}{sfg.1}{}} -\@writefile{toc}{\providecommand\tocbasic@end@toc@file{}\tocbasic@end@toc@file} \gdef \@abspage@last{3} diff --git a/MS/SM.qmd b/MS/SM.qmd index c3432f5..487d581 100644 --- a/MS/SM.qmd +++ b/MS/SM.qmd @@ -2,58 +2,26 @@ msname: MS smname: SM bibliography: [../BB/Ref.bib, ../BB/localRef.bib] -# csl: _extensions/inst/tex/elsevier-harvard.csl -# csl: ./_extensions/inst/tex/american-chemical-society.csl -csl: ./_extensions/inst/tex/nature.csl +csl: _extensions/drwater/dwinst/nature.csl subtitle: "Supplementary Information" date: "" format: - elsevier-html: - css: _extensions/inst/css/style.css - docx: - reference-doc: _extensions/inst/word/MS.docx - pdf: - # documentclass: article + dwms-html: default + dwms-docx: default + dwms-pdf: latex-clean: false # to keep aux - # toc: true - # toc-location: body - citecolor: blue - colorlinks: true - number-sections: false - sansfont: "Gill Sans" - papersize: a4paper - sansfontoptions: - # - Color=39729E - - Color=2A303B - mainfont: "Source Sans 3" #| Verdana (fontsize: 11pt) # Source Sans 3 | Times New Roman| Helvetica | PT Sans - monofont: "JetBrains Mono" - mathfont: "Cambria Math" - CJKmainfont: SimHei - fontsize: 11pt keep-md: false keep-tex: true - include-in-header: "./_extensions/inst/tex/header.tex" header-includes: + - \doublespacing + - \linenumbers - \let\oldsection\section - \renewcommand{\section}{\clearpage\oldsection} - \let\oldsubsection\subsection - \renewcommand{\subsection}{\clearpage\oldsubsection} - # - \renewcommand{\thepage}{S\arabic{page}} - # - \usepackage{threeparttable} - # - \usepackage{fontspec} - # - \usepackage{endfloat} - # - \setmainfont{Calibri} - # - \usepackage[UTF8, scheme=plain]{ctex} - - \usepackage{float} - - \usepackage[normalem]{ulem} - - \usepackage[doublespacing]{setspace} - # - \usepackage{lineno} - # - \linenumbers filters: - - latex-environment - - authors-block -lightbox: auto -commands: [clab] + - latex-environment + - authoraffil --- \thispagestyle{empty} diff --git a/MS/SM.tex b/MS/SM.tex index c567b9c..dfc9bb9 100644 --- a/MS/SM.tex +++ b/MS/SM.tex @@ -7,11 +7,11 @@ % \documentclass[ english, - 11pt, - a4paperpaper, - DIV=11, - numbers=noendperiod]{scrartcl} + 12pt, + letterpaper, +]{article} \usepackage{xcolor} +\usepackage[margin=1in]{geometry} \usepackage{amsmath,amssymb} \setcounter{secnumdepth}{-\maxdimen} % remove section numbering \usepackage{iftex} @@ -28,7 +28,7 @@ \ifPDFTeX\else % xetex/luatex font selection \setmainfont[]{Source Sans 3} - \setsansfont[Color=2A303B]{Gill Sans} + \setsansfont[Color=39729E]{Gill Sans} \setmonofont[]{JetBrains Mono} \setmathfont[]{Cambria Math} \ifXeTeX @@ -56,29 +56,6 @@ }{% if KOMA class \KOMAoptions{parskip=half}} \makeatother -% Make \paragraph and \subparagraph free-standing -\makeatletter -\ifx\paragraph\undefined\else - \let\oldparagraph\paragraph - \renewcommand{\paragraph}{ - \@ifstar - \xxxParagraphStar - \xxxParagraphNoStar - } - \newcommand{\xxxParagraphStar}[1]{\oldparagraph*{#1}\mbox{}} - \newcommand{\xxxParagraphNoStar}[1]{\oldparagraph{#1}\mbox{}} -\fi -\ifx\subparagraph\undefined\else - \let\oldsubparagraph\subparagraph - \renewcommand{\subparagraph}{ - \@ifstar - \xxxSubParagraphStar - \xxxSubParagraphNoStar - } - \newcommand{\xxxSubParagraphStar}[1]{\oldsubparagraph*{#1}\mbox{}} - \newcommand{\xxxSubParagraphNoStar}[1]{\oldsubparagraph{#1}\mbox{}} -\fi -\makeatother \usepackage{longtable,booktabs,array} @@ -136,6 +113,9 @@ +% ----------------------- +% CUSTOM PREAMBLE STUFF +% ----------------------- \usepackage{enumitem} \usepackage{fontspec} \usepackage{float} @@ -144,16 +124,17 @@ \usepackage{nameref} %needed by zref-xr \usepackage{zref-xr,zref-hyperref,zref-user} \usepackage{xr-hyper} +\usepackage[normalem]{ulem} +\usepackage{setspace} +\usepackage{lineno} +\usepackage{caption} +\captionsetup{singlelinecheck=off} +\usepackage[UTF8, scheme=plain]{ctex} +\usepackage{orcidlink} +% \setkomafont{author}{\normalsize} -\setkomafont{author}{\normalsize} - -\makeatletter -\renewcommand{\title}[1]{\gdef\@title{\large\textbf{#1}}} % Adjust \Huge or other font commands -% \renewcommand{\author}[1]{\gdef\@author{\normalsize\textrm{#1}}} % Adjust \Huge or other font commands -% \renewcommand{\author}[1]{\normalsize\textit{#1}} % Use \normalsize and \textit for customization -\makeatother - +% for revision \usepackage{adjustbox} % \usepackage{xcolor} \usepackage{mdframed} @@ -210,14 +191,67 @@ \renewenvironment{quote}{\begin{question}}{\end{question}} % \renewenvironment{verbatim}{\begin{ra}}{\end{ra}} -\KOMAoption{captions}{tableheading} + + + +% ----------------- +% Title block stuff +% ----------------- + +% Title +\makeatletter +\renewcommand{\title}[1]{\gdef\@title{\large\textbf{#1}}} % Adjust \Huge or other font commands +\makeatother + + +% ------------------ +% Section headings +% ------------------ +\usepackage{titlesec} +\titleformat*{\section}{\Large\sffamily\bfseries\raggedright} +\titleformat*{\subsection}{\large\sffamily\bfseries\raggedright} +\titleformat*{\subsubsection}{\normalsize\sffamily\bfseries\raggedright} +\titleformat*{\paragraph}{\small\sffamily\bfseries\raggedright} + +%\titlespacing{}{}{}{} +% Starred version removes indentation in following paragraph +\titlespacing*{\section}{0em}{2em}{0.1em} +\titlespacing*{\subsection}{0em}{1.25em}{0.1em} +\titlespacing*{\subsubsection}{0em}{0.75em}{0em} + +% ------------------ +% Headers/Footers +% ------------------ +% \usepackage{fancyhdr} +% \pagestyle{fancy} +% \fancyhf{} +% \fancyhead[L,C,R]{} +% \fancyfoot[L,C]{} +% \fancyfoot[R]{\thepage} +% \renewcommand{\headrulewidth}{1pt} +% \fancypagestyle{plain}{% +% \renewcommand{\headrulewidth}{0pt}% +% \fancyhf{}% +% \fancyfoot[R]{\thepage}% +% } +% \renewcommand\footnoterule{\rule{\linewidth}{0.1pt}\vspace{5pt}} + +% ------------------ +% Captions +% ------------------ +\usepackage[labelfont=bf,labelsep=period]{caption} +\captionsetup[figure]{font=footnotesize,justification=raggedright,singlelinecheck=false,format=hang} + + +% --------------------------- +% END CUSTOM PREAMBLE STUFF +% --------------------------- +\doublespacing +\linenumbers \let\oldsection\section \renewcommand{\section}{\clearpage\oldsection} \let\oldsubsection\subsection \renewcommand{\subsection}{\clearpage\oldsubsection} -\usepackage{float} -\usepackage[normalem]{ulem} -\usepackage[doublespacing]{setspace} \makeatletter \@ifpackageloaded{float}{}{\usepackage{float}} \floatstyle{plain} @@ -324,8 +358,8 @@ colorlinks=true, linkcolor={blue}, filecolor={Maroon}, - citecolor={blue}, - urlcolor={Blue}, + citecolor={Blue}, + urlcolor={blue}, pdfcreator={LaTeX via pandoc}} @@ -333,27 +367,38 @@ \usepackage{etoolbox} \makeatletter \providecommand{\subtitle}[1]{% add subtitle to \maketitle - \apptocmd{\@title}{\par {\large #1 \par}}{}{} + \apptocmd{\@title}{\par {\large\sffamily\bfseries #1 \par}}{}{} } \makeatother \subtitle{Supplementary Information} -\author{Xxxxx Yyyy\textsuperscript{1} \and Ming -Su\textsuperscript{1,2,*} \and Min Yang\textsuperscript{1,2,*}} +\author{\footnotesize Xxxxx +Yyyy\textsuperscript{a,\#} \and \footnotesize Ming +Su\textsuperscript{\orcidlink{0000000198211268},a,b,\#,*} \and \footnotesize Min +Yang\textsuperscript{a,b,*}} \date{} \begin{document} + +% for some reason this does not work in header +\renewcommand{\abstractname}{Abstract.} + +% add the short title to the fancy header + \maketitle +%\noindent \rule{\linewidth}{.5pt} +%\noindent \rule{\linewidth}{.5pt} -\textsuperscript{1} State Key Laboratory of Environmental Aquatic +\textsuperscript{\#} These authors contributed equally to this work. + +\textsuperscript{a} State Key Laboratory of Environmental Aquatic Chemistry, Research Center for Eco-Environmental Sciences, Chinese -Academy of Sciences\\ -\textsuperscript{2} University of Chinese Academy of Sciences +Academy of Sciences, Beijing 100085, China.\\ +\textsuperscript{b} University of Chinese Academy of Sciences, Beijing +100049, China. -\textsuperscript{*} Correspondence: -\href{mailto:mingsu@rcees.ac.cn}{Ming Su -\textless{}mingsu@rcees.ac.cn\textgreater{}}, -\href{mailto:yangmin@rcees.ac.cn}{Min Yang -\textless{}yangmin@rcees.ac.cn\textgreater{}} +\textsuperscript{*} Corresponding to: +\href{mailto:mingsu@rcees.ac.cn}{Ming Su (mingsu@rcees.ac.cn)}, +\href{mailto:yangmin@rcees.ac.cn}{Min Yang (yangmin@rcees.ac.cn)} \thispagestyle{empty} diff --git a/MS/SM.toc b/MS/SM.toc index dbff9dc..9fbdd18 100644 --- a/MS/SM.toc +++ b/MS/SM.toc @@ -1,2 +1 @@ \babel@toc {english}{}\relax -\providecommand \tocbasic@end@toc@file {}\tocbasic@end@toc@file diff --git a/MS/elsarticle-harv.bst b/MS/elsarticle-harv.bst deleted file mode 100755 index 3bf1acb..0000000 --- a/MS/elsarticle-harv.bst +++ /dev/null @@ -1,1598 +0,0 @@ -%% -%% This is file `elsarticle-harv.bst' (Version 2.1), -%% -%% Copyright 2009-2020 Elsevier Ltd -%% -%% This file is part of the 'Elsarticle Bundle'. -%% --------------------------------------------- -%% -%% It may be distributed under the conditions of the LaTeX Project Public -%% License, either version 1.2 of this license or (at your option) any -%% later version. The latest version of this license is in -%% http://www.latex-project.org/lppl.txt -%% and version 1.2 or later is part of all distributions of LaTeX -%% version 1999/12/01 or later. -%% -%% $Id: elsarticle-harv.bst 194 2020-11-23 11:29:27Z rishi $ -%% -%% $URL: https://lenova.river-valley.com/svn/elsarticle/trunk/elsarticle-harv.bst $ -%% - -ENTRY - { address - archive - author - booktitle - chapter - collaboration - edition - editor - howpublished - institution - journal - key - month - note - number - organization - pages - publisher - school - series - title - type - volume - year - url - doi - eprint - pubmed - } - {} - { label extra.label sort.label short.list } - -INTEGERS { output.state before.all mid.sentence after.sentence after.block } - -STRINGS { urlprefix doiprefix eprintprefix pubmedprefix } - -FUNCTION {init.web.variables} -{ - "\URLprefix " 'urlprefix := - "\DOIprefix" 'doiprefix := - "\ArXivprefix " 'eprintprefix := - "\Pubmedprefix " 'pubmedprefix := -} - -FUNCTION {init.state.consts} -{ #0 'before.all := - #1 'mid.sentence := - #2 'after.sentence := - #3 'after.block := -} -STRINGS { s t} -FUNCTION {output.comma} -{ ", " * write$} - -FUNCTION {output.nonnull} -{ 's := - output.state mid.sentence = - { ". " * write$ } - { output.state after.block = - { add.period$ write$ - newline$ - "\newblock " write$ - } - { output.state before.all = - 'write$ - { ", " * write$ } - if$ - } - if$ - mid.sentence 'output.state := - } - if$ - s -} -FUNCTION {output.commanull} -{ 's := - output.state mid.sentence = - { ", " * write$ } - { output.state after.block = - { ", " * write$ - newline$ - "\newblock " write$ - } - { output.state before.all = - 'write$ - { add.period$ " " * write$ } - if$ - } - if$ - mid.sentence 'output.state := - } - if$ - s -} -FUNCTION {output} -{ duplicate$ empty$ - 'pop$ - 'output.nonnull - if$ -} -FUNCTION {output.check} -{ 't := - duplicate$ empty$ - { pop$ "empty " t * " in " * cite$ * warning$ } - 'output.nonnull - if$ -} -FUNCTION {output.book.check} -{ 't := - duplicate$ empty$ - { pop$ "empty " t * " in " * cite$ * warning$ } - 'output.nonnull - if$ -} -FUNCTION {fin.entry} -{ add.period$ - write$ - newline$ -} - -FUNCTION {new.block} -{ output.state before.all = - 'skip$ - { after.block 'output.state := } - if$ -} -FUNCTION {new.sentence} -{ output.state after.block = - 'skip$ - { output.state before.all = - 'skip$ - { after.sentence 'output.state := } - if$ - } - if$ -} -FUNCTION {add.blank} -{ " " * before.all 'output.state := -} - -FUNCTION {date.block} -{ - new.block -} - -FUNCTION {not} -{ { #0 } - { #1 } - if$ -} -FUNCTION {and} -{ 'skip$ - { pop$ #0 } - if$ -} -FUNCTION {or} -{ { pop$ #1 } - 'skip$ - if$ -} -FUNCTION {new.block.checkb} -{ empty$ - swap$ empty$ - and - 'skip$ - 'new.block - if$ -} -FUNCTION {field.or.null} -{ duplicate$ empty$ - { pop$ "" } - 'skip$ - if$ -} -FUNCTION {emphasize} -{ duplicate$ empty$ - { pop$ "" } - { "\textit{" swap$ * "}" * } - if$ -} -FUNCTION {tie.or.space.prefix} -{ duplicate$ text.length$ #3 < - { "~" } - { " " } - if$ - swap$ -} - -FUNCTION {capitalize} -{ "u" change.case$ "t" change.case$ } - -FUNCTION {space.word} -{ " " swap$ * " " * } - % Here are the language-specific definitions for explicit words. - % Each function has a name bbl.xxx where xxx is the English word. - % The language selected here is ENGLISH -FUNCTION {bbl.and} -{ "and"} - -FUNCTION {bbl.etal} -{ "et~al." } - -FUNCTION {bbl.editors} -{ "Eds." } - -FUNCTION {bbl.editor} -{ "Ed." } - -FUNCTION {bbl.edby} -{ "edited by" } - -FUNCTION {bbl.edition} -{ "ed." } - -FUNCTION {bbl.volume} -{ "volume" } - -FUNCTION {bbl.of} -{ "of" } - -FUNCTION {bbl.number} -{ "number" } - -FUNCTION {bbl.nr} -{ "no." } - -FUNCTION {bbl.in} -{ "in" } - -FUNCTION {bbl.pages} -{ "pp." } - -FUNCTION {bbl.page} -{ "p." } - -FUNCTION {bbl.chapter} -{ "chapter" } - -FUNCTION {bbl.techrep} -{ "Technical Report" } - -FUNCTION {bbl.mthesis} -{ "Master's thesis" } - -FUNCTION {bbl.phdthesis} -{ "Ph.D. thesis" } - -MACRO {jan} {"January"} - -MACRO {feb} {"February"} - -MACRO {mar} {"March"} - -MACRO {apr} {"April"} - -MACRO {may} {"May"} - -MACRO {jun} {"June"} - -MACRO {jul} {"July"} - -MACRO {aug} {"August"} - -MACRO {sep} {"September"} - -MACRO {oct} {"October"} - -MACRO {nov} {"November"} - -MACRO {dec} {"December"} - -MACRO {acmcs} {"ACM Comput. Surv."} - -MACRO {acta} {"Acta Inf."} - -MACRO {cacm} {"Commun. ACM"} - -MACRO {ibmjrd} {"IBM J. Res. Dev."} - -MACRO {ibmsj} {"IBM Syst.~J."} - -MACRO {ieeese} {"IEEE Trans. Software Eng."} - -MACRO {ieeetc} {"IEEE Trans. Comput."} - -MACRO {ieeetcad} - {"IEEE Trans. Comput. Aid. Des."} - -MACRO {ipl} {"Inf. Process. Lett."} - -MACRO {jacm} {"J.~ACM"} - -MACRO {jcss} {"J.~Comput. Syst. Sci."} - -MACRO {scp} {"Sci. Comput. Program."} - -MACRO {sicomp} {"SIAM J. Comput."} - -MACRO {tocs} {"ACM Trans. Comput. Syst."} - -MACRO {tods} {"ACM Trans. Database Syst."} - -MACRO {tog} {"ACM Trans. Graphic."} - -MACRO {toms} {"ACM Trans. Math. Software"} - -MACRO {toois} {"ACM Trans. Office Inf. Syst."} - -MACRO {toplas} {"ACM Trans. Progr. Lang. Syst."} - -MACRO {tcs} {"Theor. Comput. Sci."} - -FUNCTION {bibinfo.check} -{ swap$ - duplicate$ missing$ - { - pop$ pop$ - "" - } - { duplicate$ empty$ - { - swap$ pop$ - } - { swap$ - "\bibinfo{" swap$ * "}{" * swap$ * "}" * - } - if$ - } - if$ -} -FUNCTION {bibinfo.warn} -{ swap$ - duplicate$ missing$ - { - swap$ "missing " swap$ * " in " * cite$ * warning$ pop$ - "" - } - { duplicate$ empty$ - { - swap$ "empty " swap$ * " in " * cite$ * warning$ - } - { swap$ - pop$ - } - if$ - } - if$ -} - -STRINGS { bibinfo} - -INTEGERS { nameptr namesleft numnames } - -FUNCTION {format.names} -{ 'bibinfo := - duplicate$ empty$ 'skip$ { - 's := - "" 't := - #1 'nameptr := - s num.names$ 'numnames := - numnames 'namesleft := - { namesleft #0 > } - { s nameptr - "{vv~}{ll}{, jj}{, f{.}.}" - format.name$ - bibinfo bibinfo.check - 't := - nameptr #1 > - { - namesleft #1 > - { ", " * t * } - { - "," * - s nameptr "{ll}" format.name$ duplicate$ "others" = - { 't := } - { pop$ } - if$ - t "others" = - { - " " * bbl.etal * - } - { " " * t * } - if$ - } - if$ - } - 't - if$ - nameptr #1 + 'nameptr := - namesleft #1 - 'namesleft := - } - while$ - } if$ -} -FUNCTION {format.names.ed} -{ - format.names -} -FUNCTION {format.key} -{ empty$ - { key field.or.null } - { "" } - if$ -} - -FUNCTION {format.authors} -{ author "author" format.names - duplicate$ empty$ 'skip$ - { collaboration "collaboration" bibinfo.check - duplicate$ empty$ 'skip$ - { " (" swap$ * ")" * } - if$ - * - } - if$ -} - -FUNCTION {get.bbl.editor} -{ editor num.names$ #1 > 'bbl.editors 'bbl.editor if$ } - -FUNCTION {format.editors} -{ editor "editor" format.names duplicate$ empty$ 'skip$ - { - " " * - get.bbl.editor - capitalize - "(" swap$ * ")" * - * - } - if$ -} -FUNCTION {format.note} -{ - note empty$ - { "" } - { note #1 #1 substring$ - duplicate$ "{" = - 'skip$ - { output.state mid.sentence = - { "l" } - { "u" } - if$ - change.case$ - } - if$ - note #2 global.max$ substring$ * "note" bibinfo.check - } - if$ -} - -FUNCTION {format.title} -{ title - duplicate$ empty$ 'skip$ - { "t" change.case$ } - if$ - "title" bibinfo.check -} -FUNCTION {format.full.names} -{'s := - "" 't := - #1 'nameptr := - s num.names$ 'numnames := - numnames 'namesleft := - { namesleft #0 > } - { s nameptr - "{vv~}{ll}" format.name$ - 't := - nameptr #1 > - { - namesleft #1 > - { ", " * t * } - { - s nameptr "{ll}" format.name$ duplicate$ "others" = - { 't := } - { pop$ } - if$ - t "others" = - { - " " * bbl.etal * - } - { - bbl.and - space.word * t * - } - if$ - } - if$ - } - 't - if$ - nameptr #1 + 'nameptr := - namesleft #1 - 'namesleft := - } - while$ -} - -FUNCTION {author.editor.key.full} -{ author empty$ - { editor empty$ - { key empty$ - { cite$ #1 #3 substring$ } - 'key - if$ - } - { editor format.full.names } - if$ - } - { author format.full.names } - if$ -} - -FUNCTION {author.key.full} -{ author empty$ - { key empty$ - { cite$ #1 #3 substring$ } - 'key - if$ - } - { author format.full.names } - if$ -} - -FUNCTION {editor.key.full} -{ editor empty$ - { key empty$ - { cite$ #1 #3 substring$ } - 'key - if$ - } - { editor format.full.names } - if$ -} - -FUNCTION {make.full.names} -{ type$ "book" = - type$ "inbook" = - or - 'author.editor.key.full - { type$ "proceedings" = - 'editor.key.full - 'author.key.full - if$ - } - if$ -} - -FUNCTION {output.bibitem} -{ newline$ - "\bibitem[{" write$ - label write$ - ")" make.full.names duplicate$ short.list = - { pop$ } - { * } - if$ - "}]{" * write$ - cite$ write$ - "}" write$ - newline$ - "" - before.all 'output.state := -} - -FUNCTION {n.dashify} -{ - 't := - "" - { t empty$ not } - { t #1 #1 substring$ "-" = - { t #1 #2 substring$ "--" = not - { "--" * - t #2 global.max$ substring$ 't := - } - { { t #1 #1 substring$ "-" = } - { "-" * - t #2 global.max$ substring$ 't := - } - while$ - } - if$ - } - { t #1 #1 substring$ * - t #2 global.max$ substring$ 't := - } - if$ - } - while$ -} - -FUNCTION {word.in} -{ bbl.in %capitalize - ":" * - " " * } - -FUNCTION {format.date} -{ year "year" bibinfo.check duplicate$ empty$ - { - } - 'skip$ - if$ - extra.label * - before.all 'output.state := - ", " swap$ * -} -FUNCTION {format.btitle} -{ title "title" bibinfo.check - duplicate$ empty$ 'skip$ - { - } - if$ -} -FUNCTION {either.or.check} -{ empty$ - 'pop$ - { "can't use both " swap$ * " fields in " * cite$ * warning$ } - if$ -} -FUNCTION {format.bvolume} -{ volume empty$ - { "" } - { bbl.volume volume tie.or.space.prefix - "volume" bibinfo.check * * - series "series" bibinfo.check - duplicate$ empty$ 'pop$ - { swap$ bbl.of space.word * swap$ - emphasize * } - if$ - "volume and number" number either.or.check - } - if$ -} -FUNCTION {format.number.series} -{ volume empty$ - { number empty$ - { series field.or.null } - { series empty$ - { number "number" bibinfo.check } - { output.state mid.sentence = - { bbl.number } - { bbl.number capitalize } - if$ - number tie.or.space.prefix "number" bibinfo.check * * - bbl.in space.word * - series "series" bibinfo.check * - } - if$ - } - if$ - } - { "" } - if$ -} - -FUNCTION {format.edition} -{ edition duplicate$ empty$ 'skip$ - { - output.state mid.sentence = - { "l" } - { "t" } - if$ change.case$ - "edition" bibinfo.check - " " * bbl.edition * - } - if$ -} -INTEGERS { multiresult } -FUNCTION {multi.page.check} -{ 't := - #0 'multiresult := - { multiresult not - t empty$ not - and - } - { t #1 #1 substring$ - duplicate$ "-" = - swap$ duplicate$ "," = - swap$ "+" = - or or - { #1 'multiresult := } - { t #2 global.max$ substring$ 't := } - if$ - } - while$ - multiresult -} -%FUNCTION {format.pages} -%{ pages duplicate$ empty$ 'skip$ -% { duplicate$ multi.page.check -% { -% n.dashify -% } -% { -% } -% if$ -% "pages" bibinfo.check -% } -% if$ -%} - -FUNCTION {format.pages} -{ pages duplicate$ empty$ 'skip$ - { duplicate$ multi.page.check - { - bbl.pages swap$ - n.dashify - } - { - bbl.page swap$ - } - if$ - tie.or.space.prefix - "pages" bibinfo.check - * * - } - if$ -} - -FUNCTION {format.journal.pages} -{ pages duplicate$ empty$ 'pop$ - { swap$ duplicate$ empty$ - { pop$ pop$ format.pages } - { - ", " * - swap$ - n.dashify - "pages" bibinfo.check - * - } - if$ - } - if$ -} -FUNCTION {format.vol.num.pages} -{ volume field.or.null - duplicate$ empty$ 'skip$ - { - "volume" bibinfo.check - } - if$ -} - -FUNCTION {format.chapter.pages} -{ chapter empty$ - { "" } - { type empty$ - { bbl.chapter } - { type "l" change.case$ - "type" bibinfo.check - } - if$ - chapter tie.or.space.prefix - "chapter" bibinfo.check - * * - } - if$ -} - -FUNCTION {format.booktitle} -{ - booktitle "booktitle" bibinfo.check -} -FUNCTION {format.in.ed.booktitle} -{ format.booktitle duplicate$ empty$ 'skip$ - { - editor "editor" format.names.ed duplicate$ empty$ 'pop$ - { - " " * - get.bbl.editor - capitalize - "(" swap$ * "), " * - * swap$ - * } - if$ - word.in swap$ * - } - if$ -} -FUNCTION {format.thesis.type} -{ type duplicate$ empty$ - 'pop$ - { swap$ pop$ - "t" change.case$ "type" bibinfo.check - } - if$ -} -FUNCTION {format.tr.number} -{ number "number" bibinfo.check - type duplicate$ empty$ - { pop$ bbl.techrep } - 'skip$ - if$ - "type" bibinfo.check - swap$ duplicate$ empty$ - { pop$ "t" change.case$ } - { tie.or.space.prefix * * } - if$ -} -FUNCTION {format.article.crossref} -{ - word.in - " \cite{" * crossref * "}" * -} -FUNCTION {format.book.crossref} -{ volume duplicate$ empty$ - { "empty volume in " cite$ * "'s crossref of " * crossref * warning$ - pop$ word.in - } - { bbl.volume - capitalize - swap$ tie.or.space.prefix "volume" bibinfo.check * * bbl.of space.word * - } - if$ - " \cite{" * crossref * "}" * -} -FUNCTION {format.incoll.inproc.crossref} -{ - word.in - " \cite{" * crossref * "}" * -} -FUNCTION {format.org.or.pub} -{ 't := - "" - address empty$ t empty$ and - 'skip$ - { - t empty$ - { address "address" bibinfo.check * - } - { t * - address empty$ - 'skip$ - { ", " * address "address" bibinfo.check * } - if$ - } - if$ - } - if$ -} -FUNCTION {format.publisher.address} -{ publisher "publisher" bibinfo.check format.org.or.pub -} - -FUNCTION {format.organization.address} -{ organization "organization" bibinfo.check format.org.or.pub -} - -FUNCTION {print.url} - {url duplicate$ empty$ - { pop$ "" } - { new.sentence - urlprefix "\url{" * swap$ * "}" * - } - if$ - } - -FUNCTION {print.doi} - {doi duplicate$ empty$ - { pop$ "" } - { new.sentence - doiprefix "\doi{" * swap$ * "}" * - } - if$ - } - -FUNCTION {print.eprint} - {eprint duplicate$ empty$ - { pop$ "" } - { new.sentence - duplicate$ "\href{http://arxiv.org/abs/" swap$ * "}{{\tt arXiv:" * swap$ * "}}" * } - if$ - } - -FUNCTION {print.pubmed} - {pubmed duplicate$ empty$ - { pop$ "" } - { new.sentence - pubmedprefix "\Pubmed{" * swap$ * "}" * - } - if$ - } - -FUNCTION {webpage} -{ "%Type = Webpage" write$ - output.bibitem - format.authors "author" output.check - author format.key output - author empty$ - { - format.title "title" output.check - new.block - format.date "year" output.check - date.block - } - { - format.date "year" output.check - date.block - format.title "title" output.check - new.block -} - if$ - print.url output - fin.entry -} - - -FUNCTION {article} -{ "%Type = Article" write$ - output.bibitem - format.authors "author" output.check - author format.key output - format.date "year" output.check - date.block - format.title "title" output.check - new.block - crossref missing$ - { - journal - "journal" bibinfo.check - "journal" output.check - add.blank - format.vol.num.pages output - } - { format.article.crossref output.nonnull - } - if$ - format.journal.pages - new.block - print.url output - print.doi output - print.eprint output - print.pubmed output - format.note output - fin.entry -} - -FUNCTION {book} -{ "%Type = Book" write$ - output.bibitem - author empty$ - { format.editors "author and editor" output.check - editor format.key output - } - { format.authors output.nonnull - crossref missing$ - { "author and editor" editor either.or.check } - 'skip$ - if$ - } - if$ - format.date "year" output.check - date.block - format.btitle "title" output.check - crossref missing$ - { format.bvolume output - new.block - format.number.series output - format.edition output - new.sentence - format.publisher.address output - } - { - new.block - format.book.crossref output.nonnull - } - if$ - new.block - print.url output - print.doi output - print.eprint output - print.pubmed output - format.note output - fin.entry -} - -FUNCTION {booklet} -{ "%Type = Booklet" write$ - output.bibitem - format.authors output - author format.key output - format.date "year" output.check - date.block - format.title "title" output.check - new.block - howpublished "howpublished" bibinfo.check output - address "address" bibinfo.check output - new.block - print.url output - print.doi output - print.eprint output - print.pubmed output - format.note output - fin.entry -} - -FUNCTION {inbook} -{ "%Type = Inbook" write$ - output.bibitem - author empty$ - { format.editors "author and editor" output.check - editor format.key output - } - { format.authors output.nonnull - crossref missing$ - { "author and editor" editor either.or.check } - 'skip$ - if$ - } - if$ - format.date "year" output.check - date.block - format.btitle "title" output.check - format.edition output - crossref missing$ - { - format.publisher.address output - format.bvolume output - format.chapter.pages "chapter and pages" output.check - new.block - format.number.series output - new.sentence - } - { - format.chapter.pages "chapter and pages" output.check - new.block - format.book.crossref output.nonnull - } - if$ - format.pages "pages" output.check - new.block - print.url output - print.doi output - print.eprint output - print.pubmed output - format.note output - fin.entry -} - -FUNCTION {incollection} -{ "%Type = Incollection" write$ - output.bibitem - format.authors "author" output.check - author format.key output - format.date "year" output.check - date.block - format.title "title" output.book.check - new.sentence - crossref missing$ - { format.in.ed.booktitle "booktitle" output.book.check - format.edition output - format.publisher.address output - format.bvolume output - format.number.series output - format.chapter.pages output - new.sentence - } - { format.incoll.inproc.crossref output.nonnull - format.chapter.pages output - } - if$ - format.pages "pages" output.check - new.block - print.url output - print.doi output - print.eprint output - print.pubmed output - format.note output - fin.entry -} - -FUNCTION {inproceedings} -{ "%Type = Inproceedings" write$ - output.bibitem - format.authors "author" output.check - author format.key output - format.date "year" output.check - date.block - format.title "title" output.book.check - new.sentence - crossref missing$ - { format.in.ed.booktitle "booktitle" output.check - new.sentence - publisher empty$ - { format.organization.address output } - { organization "organization" bibinfo.check output - format.publisher.address output - } - if$ -% format.bvolume output -% format.number.series output -% format.pages output - } - { format.incoll.inproc.crossref output.nonnull - format.pages output - } - if$ - format.pages "pages" output.check - new.block - print.url output - print.doi output - print.eprint output - print.pubmed output - format.note output - fin.entry -} - -FUNCTION {conference} { inproceedings } - -FUNCTION {manual} -{ "%Type = Manual" write$ - output.bibitem - format.authors output - author format.key output - format.date "year" output.check - date.block - format.btitle "title" output.check - format.edition output - organization address new.block.checkb - organization "organization" bibinfo.check output - address "address" bibinfo.check output - new.block - print.url output - print.doi output - print.eprint output - print.pubmed output - format.note output - fin.entry -} - -FUNCTION {mastersthesis} -{ "%Type = Masterthesis" write$ - output.bibitem - format.authors "author" output.check - author format.key output - format.date "year" output.check - date.block - format.btitle - "title" output.check - new.block - bbl.mthesis format.thesis.type output.nonnull - school "school" bibinfo.warn output - address "address" bibinfo.check output - new.block - print.url output - print.doi output - print.eprint output - print.pubmed output - format.note output - fin.entry -} - -FUNCTION {misc} -{ "%Type = Misc" write$ - output.bibitem - format.authors output - author format.key output - format.date "year" output.check - date.block - format.title output - new.block - howpublished "howpublished" bibinfo.check output - new.block - print.url output - print.doi output - print.eprint output - print.pubmed output - format.note output - fin.entry -} - -FUNCTION {phdthesis} -{ "%Type = Phdthesis" write$ - output.bibitem - format.authors "author" output.check - author format.key output - format.date "year" output.check - date.block - format.btitle - "title" output.check - new.block - bbl.phdthesis format.thesis.type output.nonnull - school "school" bibinfo.warn output - address "address" bibinfo.check output - new.block - print.url output - print.doi output - print.eprint output - print.pubmed output - format.note output - fin.entry -} - -FUNCTION {proceedings} -{ "%Type = Proceedings" write$ - output.bibitem - format.editors output - editor format.key output - format.date "year" output.check - date.block - format.btitle "title" output.check - format.bvolume output - format.number.series output - new.sentence - publisher empty$ - { format.organization.address output } - { organization "organization" bibinfo.check output - format.publisher.address output - } - if$ - new.block - print.url output - print.doi output - print.eprint output - print.pubmed output - format.note output - fin.entry -} - -FUNCTION {techreport} -{ "%Type = Techreport" write$ - output.bibitem - format.authors "author" output.check - author format.key output - format.date "year" output.check - date.block - format.btitle - "title" output.check - new.block - format.tr.number output.nonnull - institution "institution" bibinfo.warn output - address "address" bibinfo.check output - new.block - print.url output - print.doi output - print.eprint output - print.pubmed output - format.note output - fin.entry -} - -FUNCTION {unpublished} -{ "%Type = Unpublished" write$ - output.bibitem - format.authors "author" output.check - author format.key output - format.date "year" output.check - date.block - format.title "title" output.check - new.block - print.url output - print.doi output - print.eprint output - print.pubmed output - format.note "note" output.check - fin.entry -} - -FUNCTION {default.type} { misc } -READ -FUNCTION {sortify} -{ purify$ - "l" change.case$ -} -INTEGERS { len } -FUNCTION {chop.word} -{ 's := - 'len := - s #1 len substring$ = - { s len #1 + global.max$ substring$ } - 's - if$ -} -FUNCTION {format.lab.names} -{ 's := - "" 't := - s #1 "{vv~}{ll}" format.name$ - s num.names$ duplicate$ - #2 > - { pop$ - " " * bbl.etal * - } - { #2 < - 'skip$ - { s #2 "{ff }{vv }{ll}{ jj}" format.name$ "others" = - { - " " * bbl.etal * - } - { bbl.and space.word * s #2 "{vv~}{ll}" format.name$ - * } - if$ - } - if$ - } - if$ -} - -FUNCTION {author.key.label} -{ author empty$ - { key empty$ - { cite$ #1 #3 substring$ } - 'key - if$ - } - { author format.lab.names } - if$ -} - -FUNCTION {author.editor.key.label} -{ author empty$ - { editor empty$ - { key empty$ - { cite$ #1 #3 substring$ } - 'key - if$ - } - { editor format.lab.names } - if$ - } - { author format.lab.names } - if$ -} - -FUNCTION {editor.key.label} -{ editor empty$ - { key empty$ - { cite$ #1 #3 substring$ } - 'key - if$ - } - { editor format.lab.names } - if$ -} - -FUNCTION {calc.short.authors} -{ type$ "book" = - type$ "inbook" = - or - 'author.editor.key.label - { type$ "proceedings" = - 'editor.key.label - 'author.key.label - if$ - } - if$ - 'short.list := -} - -FUNCTION {calc.label} -{ calc.short.authors - short.list - "(" - * - year duplicate$ empty$ - short.list key field.or.null = or - { pop$ "" } - 'skip$ - if$ - * - 'label := -} - -FUNCTION {sort.format.names} -{ 's := - #1 'nameptr := - "" - s num.names$ 'numnames := - numnames 'namesleft := - { namesleft #0 > } - { s nameptr - "{ll{ }}{ f{ }}{ jj{ }}" - format.name$ 't := - nameptr #1 > - { - " " * - namesleft #1 = t "others" = and - { "zzzzz" * } - { t sortify * } - if$ - } - { t sortify * } - if$ - nameptr #1 + 'nameptr := - namesleft #1 - 'namesleft := - } - while$ -} - -FUNCTION {sort.format.title} -{ 't := - "A " #2 - "An " #3 - "The " #4 t chop.word - chop.word - chop.word - sortify - #1 global.max$ substring$ -} -FUNCTION {author.sort} -{ author empty$ - { key empty$ - { "to sort, need author or key in " cite$ * warning$ - "" - } - { key sortify } - if$ - } - { author sort.format.names } - if$ -} -FUNCTION {author.editor.sort} -{ author empty$ - { editor empty$ - { key empty$ - { "to sort, need author, editor, or key in " cite$ * warning$ - "" - } - { key sortify } - if$ - } - { editor sort.format.names } - if$ - } - { author sort.format.names } - if$ -} -FUNCTION {editor.sort} -{ editor empty$ - { key empty$ - { "to sort, need editor or key in " cite$ * warning$ - "" - } - { key sortify } - if$ - } - { editor sort.format.names } - if$ -} -FUNCTION {presort} -{ calc.label - label sortify - " " - * - type$ "book" = - type$ "inbook" = - or - 'author.editor.sort - { type$ "proceedings" = - 'editor.sort - 'author.sort - if$ - } - if$ - #1 entry.max$ substring$ - 'sort.label := - sort.label - * - " " - * - title field.or.null - sort.format.title - * - #1 entry.max$ substring$ - 'sort.key$ := -} - -ITERATE {presort} -SORT -STRINGS { last.label next.extra } -INTEGERS { last.extra.num number.label } -FUNCTION {initialize.extra.label.stuff} -{ #0 int.to.chr$ 'last.label := - "" 'next.extra := - #0 'last.extra.num := - #0 'number.label := -} -FUNCTION {forward.pass} -{ last.label label = - { last.extra.num #1 + 'last.extra.num := - last.extra.num int.to.chr$ 'extra.label := - } - { "a" chr.to.int$ 'last.extra.num := - "" 'extra.label := - label 'last.label := - } - if$ - number.label #1 + 'number.label := -} -FUNCTION {reverse.pass} -{ next.extra "b" = - { "a" 'extra.label := } - 'skip$ - if$ - extra.label 'next.extra := - extra.label - duplicate$ empty$ - 'skip$ -% { "{\natexlab{" swap$ * "}}" * } - { "" swap$ * "" * } - if$ - 'extra.label := - label extra.label * 'label := -} -EXECUTE {initialize.extra.label.stuff} -ITERATE {forward.pass} -REVERSE {reverse.pass} -FUNCTION {bib.sort.order} -{ sort.label - " " - * - year field.or.null sortify - * - " " - * - title field.or.null - sort.format.title - * - #1 entry.max$ substring$ - 'sort.key$ := -} -ITERATE {bib.sort.order} -SORT -FUNCTION {begin.bib} -{ preamble$ empty$ - 'skip$ - { preamble$ write$ newline$ } - if$ - "\begin{thebibliography}{" number.label int.to.str$ * "}" * - write$ newline$ - "\expandafter\ifx\csname natexlab\endcsname\relax\def\natexlab#1{#1}\fi" - write$ newline$ - "\providecommand{\url}[1]{\texttt{#1}}" - write$ newline$ - "\providecommand{\href}[2]{#2}" - write$ newline$ - "\providecommand{\path}[1]{#1}" - write$ newline$ - "\providecommand{\DOIprefix}{doi:}" - write$ newline$ - "\providecommand{\ArXivprefix}{arXiv:}" - write$ newline$ - "\providecommand{\URLprefix}{URL: }" - write$ newline$ - "\providecommand{\Pubmedprefix}{pmid:}" - write$ newline$ - "\providecommand{\doi}[1]{\href{http://dx.doi.org/#1}{\path{#1}}}" - write$ newline$ - "\providecommand{\Pubmed}[1]{\href{pmid:#1}{\path{#1}}}" - write$ newline$ - "\providecommand{\bibinfo}[2]{#2}" - write$ newline$ - "\ifx\xfnm\relax \def\xfnm[#1]{\unskip,\space#1}\fi" - write$ newline$ -} -EXECUTE {begin.bib} -EXECUTE {init.state.consts} -EXECUTE {init.web.variables} -ITERATE {call.type$} -FUNCTION {end.bib} -{ newline$ - "\end{thebibliography}" write$ newline$ -} -EXECUTE {end.bib} -%% End of customized bst file -%% -%% End of file `elsarticle-harv.bst'. -%% -%% Change log: -%% ----------- -%% 22.04.2011 -%% -%% 10.08.2012 -%% a. doi, url, eprint, pmid added -%% b. Bibtype `webpage' defined -%% -%% 30.08.2012 -%% a. collaboration added. -%% - - diff --git a/MS/elsarticle-num.bst b/MS/elsarticle-num.bst deleted file mode 100755 index 14499bf..0000000 --- a/MS/elsarticle-num.bst +++ /dev/null @@ -1,1509 +0,0 @@ -%% -%% This is file `elsarticle-num.bst' (Version 2.1), -%% -%% Copyright 2007-2020 Elsevier Ltd -%% -%% This file is part of the 'Elsarticle Bundle'. -%% --------------------------------------------- -%% -%% It may be distributed under the conditions of the LaTeX Project Public -%% License, either version 1.2 of this license or (at your option) any -%% later version. The latest version of this license is in -%% http://www.latex-project.org/lppl.txt -%% and version 1.2 or later is part of all distributions of LaTeX -%% version 1999/12/01 or later. -%% -%% -%% $Id: elsarticle-num.bst 194 2020-11-23 11:29:27Z rishi $ -%% -%% $URL: https://lenova.river-valley.com/svn/elsarticle/trunk/elsarticle-num.bst $ -%% -%% ---------------------------------------- - -ENTRY - { address - author - booktitle - chapter - edition - editor - howpublished - institution - journal - key - month - note - number - organization - pages - publisher - school - series - title - type - volume - year - eprint % urlbst - doi % urlbst - url % urlbst - lastchecked % urlbst - } - {} - { label } - -INTEGERS { output.state before.all mid.sentence after.sentence after.block } - -STRINGS { urlintro eprinturl eprintprefix doiprefix doiurl openinlinelink closeinlinelink } % urlbst... -INTEGERS { hrefform inlinelinks makeinlinelink addeprints adddoiresolver } -FUNCTION {init.urlbst.variables} -{ - "Available from: " 'urlintro := % prefix before URL - "http://arxiv.org/abs/" 'eprinturl := % prefix to make URL from eprint ref - "arXiv:" 'eprintprefix := % text prefix printed before eprint ref - "https://doi.org/" 'doiurl := % prefix to make URL from DOI - "doi:" 'doiprefix := % text prefix printed before DOI ref - #1 'addeprints := % 0=no eprints; 1=include eprints - #1 'adddoiresolver := % 0=no DOI resolver; 1=include it - #2 'hrefform := % 0=no crossrefs; 1=hypertex xrefs; 2=hyperref refs - #1 'inlinelinks := % 0=URLs explicit; 1=URLs attached to titles - % the following are internal state variables, not config constants - #0 'makeinlinelink := % state variable managed by setup.inlinelink - "" 'openinlinelink := % ditto - "" 'closeinlinelink := % ditto -} -INTEGERS { - bracket.state - outside.brackets - open.brackets - within.brackets - close.brackets -} -FUNCTION {init.state.consts} -{ #0 'outside.brackets := % urlbst - #1 'open.brackets := - #2 'within.brackets := - #3 'close.brackets := - - #0 'before.all := - #1 'mid.sentence := - #2 'after.sentence := - #3 'after.block := -} - -STRINGS { s t } - -FUNCTION {output.nonnull.original} -{ 's := - output.state mid.sentence = - { ", " * write$ } - { output.state after.block = - { add.period$ write$ - newline$ - "\newblock " write$ - } - { output.state before.all = - 'write$ - { add.period$ " " * write$ } - if$ - } - if$ - mid.sentence 'output.state := - } - if$ - s -} - -FUNCTION {setup.inlinelink} -{ makeinlinelink - { hrefform #1 = % hypertex - { "\special {html: }{" * 'openinlinelink := - "\special {html:}" 'closeinlinelink := - } - { hrefform #2 = % hyperref - { "\href{" url * "}{" * 'openinlinelink := - "}" 'closeinlinelink := - } - 'skip$ - if$ % hrefform #2 = - } - if$ % hrefform #1 = - #0 'makeinlinelink := - } - 'skip$ - if$ % makeinlinelink -} -FUNCTION {add.inlinelink} -{ openinlinelink empty$ - 'skip$ - { openinlinelink swap$ * closeinlinelink * - "" 'openinlinelink := - } - if$ -} -FUNCTION {output.nonnull} -{ % Save the thing we've been asked to output - 's := - % If the bracket-state is close.brackets, then add a close-bracket to - % what is currently at the top of the stack, and set bracket.state - % to outside.brackets - bracket.state close.brackets = - { "]" * - outside.brackets 'bracket.state := - } - 'skip$ - if$ - bracket.state outside.brackets = - { % We're outside all brackets -- this is the normal situation. - % Write out what's currently at the top of the stack, using the - % original output.nonnull function. - s - add.inlinelink - output.nonnull.original % invoke the original output.nonnull - } - { % Still in brackets. Add open-bracket or (continuation) comma, add the - % new text (in s) to the top of the stack, and move to the close-brackets - % state, ready for next time (unless inbrackets resets it). If we come - % into this branch, then output.state is carefully undisturbed. - bracket.state open.brackets = - { " [" * } - { ", " * } % bracket.state will be within.brackets - if$ - s * - close.brackets 'bracket.state := - } - if$ -} - -FUNCTION {inbrackets} -{ bracket.state close.brackets = - { within.brackets 'bracket.state := } % reset the state: not open nor closed - { open.brackets 'bracket.state := } - if$ -} - -FUNCTION {format.lastchecked} -{ lastchecked empty$ - { "" } - { inbrackets "cited " lastchecked * } - if$ -} - -FUNCTION {output} -{ duplicate$ empty$ - 'pop$ - 'output.nonnull - if$ -} - -FUNCTION {output.check} -{ 't := - duplicate$ empty$ - { pop$ "empty " t * " in " * cite$ * warning$ } - 'output.nonnull - if$ -} - -FUNCTION {fin.entry.original} -{ add.period$ - write$ - newline$ -} - -FUNCTION {new.block} -{ output.state before.all = - 'skip$ - { after.block 'output.state := } - if$ -} - -FUNCTION {new.sentence} -{ output.state after.block = - 'skip$ - { output.state before.all = - 'skip$ - { after.sentence 'output.state := } - if$ - } - if$ -} - -FUNCTION {add.blank} -{ " " * before.all 'output.state := -} - -FUNCTION {date.block} -{ - add.blank -} - -FUNCTION {not} -{ { #0 } - { #1 } - if$ -} - -FUNCTION {and} -{ 'skip$ - { pop$ #0 } - if$ -} - -FUNCTION {or} -{ { pop$ #1 } - 'skip$ - if$ -} - -FUNCTION {new.block.checka} -{ empty$ - 'skip$ - 'new.block - if$ -} - -FUNCTION {new.block.checkb} -{ empty$ - swap$ empty$ - and - 'skip$ - 'new.block - if$ -} - -FUNCTION {new.sentence.checka} -{ empty$ - 'skip$ - 'new.sentence - if$ -} - -FUNCTION {new.sentence.checkb} -{ empty$ - swap$ empty$ - and - 'skip$ - 'new.sentence - if$ -} - -FUNCTION {field.or.null} -{ duplicate$ empty$ - { pop$ "" } - 'skip$ - if$ -} - -FUNCTION {emphasize} -{ skip$ } - -FUNCTION {capitalize} -{ "u" change.case$ "t" change.case$ } - -FUNCTION {space.word} -{ " " swap$ * " " * } - - % Here are the language-specific definitions for explicit words. - % Each function has a name bbl.xxx where xxx is the English word. - % The language selected here is ENGLISH -FUNCTION {bbl.and} -{ "and"} - -FUNCTION {bbl.etal} -{ "et~al." } - -FUNCTION {bbl.editors} -{ "Eds." } - -FUNCTION {bbl.editor} -{ "Ed." } - -FUNCTION {bbl.edby} -{ "edited by" } - -FUNCTION {bbl.edition} -{ "Edition" } - -FUNCTION {bbl.volume} -{ "Vol." } - -FUNCTION {bbl.of} -{ "of" } - -FUNCTION {bbl.number} -{ "no." } - -FUNCTION {bbl.nr} -{ "no." } - -FUNCTION {bbl.in} -{ "in" } - -FUNCTION {bbl.pages} -{ "pp." } - -FUNCTION {bbl.page} -{ "p." } - -FUNCTION {bbl.chapter} -{ "Ch." } - -FUNCTION {bbl.techrep} -{ "Tech. Rep." } - -FUNCTION {bbl.mthesis} -{ "Master's thesis" } - -FUNCTION {bbl.phdthesis} -{ "Ph.D. thesis" } - -FUNCTION {bbl.first} -{ "1st" } - -FUNCTION {bbl.second} -{ "2nd" } - -FUNCTION {bbl.third} -{ "3rd" } - -FUNCTION {bbl.fourth} -{ "4th" } - -FUNCTION {bbl.fifth} -{ "5th" } - -FUNCTION {bbl.st} -{ "st" } - -FUNCTION {bbl.nd} -{ "nd" } - -FUNCTION {bbl.rd} -{ "rd" } - -FUNCTION {bbl.th} -{ "th" } - -MACRO {jan} {"Jan."} - -MACRO {feb} {"Feb."} - -MACRO {mar} {"Mar."} - -MACRO {apr} {"Apr."} - -MACRO {may} {"May"} - -MACRO {jun} {"Jun."} - -MACRO {jul} {"Jul."} - -MACRO {aug} {"Aug."} - -MACRO {sep} {"Sep."} - -MACRO {oct} {"Oct."} - -MACRO {nov} {"Nov."} - -MACRO {dec} {"Dec."} - -FUNCTION {eng.ord} -{ duplicate$ "1" swap$ * - #-2 #1 substring$ "1" = - { bbl.th * } - { duplicate$ #-1 #1 substring$ - duplicate$ "1" = - { pop$ bbl.st * } - { duplicate$ "2" = - { pop$ bbl.nd * } - { "3" = - { bbl.rd * } - { bbl.th * } - if$ - } - if$ - } - if$ - } - if$ -} - -MACRO {acmcs} {"ACM Comput. Surv."} - -MACRO {acta} {"Acta Inf."} - -MACRO {cacm} {"Commun. ACM"} - -MACRO {ibmjrd} {"IBM J. Res. Dev."} - -MACRO {ibmsj} {"IBM Syst.~J."} - -MACRO {ieeese} {"IEEE Trans. Softw. Eng."} - -MACRO {ieeetc} {"IEEE Trans. Comput."} - -MACRO {ieeetcad} - {"IEEE Trans. Comput.-Aided Design Integrated Circuits"} - -MACRO {ipl} {"Inf. Process. Lett."} - -MACRO {jacm} {"J.~ACM"} - -MACRO {jcss} {"J.~Comput. Syst. Sci."} - -MACRO {scp} {"Sci. Comput. Programming"} - -MACRO {sicomp} {"SIAM J. Comput."} - -MACRO {tocs} {"ACM Trans. Comput. Syst."} - -MACRO {tods} {"ACM Trans. Database Syst."} - -MACRO {tog} {"ACM Trans. Gr."} - -MACRO {toms} {"ACM Trans. Math. Softw."} - -MACRO {toois} {"ACM Trans. Office Inf. Syst."} - -MACRO {toplas} {"ACM Trans. Prog. Lang. Syst."} - -MACRO {tcs} {"Theoretical Comput. Sci."} - -FUNCTION {write.url} -{ url empty$ - { skip$ } - { "\newline\urlprefix\url{" url * "}" * write$ newline$ } - if$ -} - -INTEGERS { nameptr namesleft numnames } - -FUNCTION {format.names} -{ 's := - #1 'nameptr := - s num.names$ 'numnames := - numnames 'namesleft := - { namesleft #0 > } - { s nameptr - "{f.~}{vv~}{ll}{, jj}" format.name$ - 't := - nameptr #1 > - { - namesleft #1 > - { ", " * t * } - { - "," * - s nameptr "{ll}" format.name$ duplicate$ "others" = - { 't := } - { pop$ } - if$ - t "others" = - { - " " * bbl.etal * - } - { " " * t * } - if$ - } - if$ - } - 't - if$ - nameptr #1 + 'nameptr := - namesleft #1 - 'namesleft := - } - while$ -} -FUNCTION {format.names.ed} -{ format.names } -FUNCTION {format.authors} -{ author empty$ - { "" } - { author format.names } - if$ -} - -FUNCTION {format.editors} -{ editor empty$ - { "" } - { editor format.names - editor num.names$ #1 > - { " (" * bbl.editors * ")" * } - { " (" * bbl.editor * ")" * } - if$ - } - if$ -} - -FUNCTION {format.in.editors} -{ editor empty$ - { "" } - { editor format.names.ed - editor num.names$ #1 > - { " (" * bbl.editors * ")" * } - { " (" * bbl.editor * ")" * } - if$ - } - if$ -} - -FUNCTION {format.note} -{ - note empty$ - { "" } - { note #1 #1 substring$ - duplicate$ "{" = - 'skip$ - { output.state mid.sentence = - { "l" } - { "u" } - if$ - change.case$ - } - if$ - note #2 global.max$ substring$ * - } - if$ -} - -FUNCTION {format.title} -{ title empty$ - { "" } - { title "t" change.case$ - } - if$ -} - -FUNCTION {output.bibitem.original} -{ newline$ - "\bibitem{" write$ - cite$ write$ - "}" write$ - newline$ - "" - before.all 'output.state := -} - -FUNCTION {n.dashify} -{ - 't := - "" - { t empty$ not } - { t #1 #1 substring$ "-" = - { t #1 #2 substring$ "--" = not - { "--" * - t #2 global.max$ substring$ 't := - } - { { t #1 #1 substring$ "-" = } - { "-" * - t #2 global.max$ substring$ 't := - } - while$ - } - if$ - } - { t #1 #1 substring$ * - t #2 global.max$ substring$ 't := - } - if$ - } - while$ -} - -FUNCTION {word.in} -{ bbl.in - ":" * - " " * } - -FUNCTION {format.date} -{ year empty$ - { month empty$ - { "" } - { "there's a month but no year in " cite$ * warning$ - month - } - if$ - } - { month empty$ - 'year - { month " " * year * } - if$ - } - if$ - duplicate$ empty$ - 'skip$ - { - before.all 'output.state := - " (" swap$ * ")" * - } - if$ -} - -FUNCTION{format.year} -{ year duplicate$ empty$ - { "empty year in " cite$ * warning$ pop$ "" } - { "(" swap$ * ")" * } - if$ -} - -FUNCTION {format.btitle} -{ title -} - -FUNCTION {tie.or.space.connect} -{ duplicate$ text.length$ #3 < - { "~" } - { " " } - if$ - swap$ * * -} - -FUNCTION {either.or.check} -{ empty$ - 'pop$ - { "can't use both " swap$ * " fields in " * cite$ * warning$ } - if$ -} - -FUNCTION {format.bvolume} -{ volume empty$ - { "" } - { bbl.volume volume tie.or.space.connect - series empty$ - 'skip$ - { bbl.of space.word * series emphasize * } - if$ - "volume and number" number either.or.check - } - if$ -} - -FUNCTION {format.number.series} -{ volume empty$ - { number empty$ - { series field.or.null } - { output.state mid.sentence = - { bbl.number } - { bbl.number capitalize } - if$ - number tie.or.space.connect - series empty$ - { "there's a number but no series in " cite$ * warning$ } - { bbl.in space.word * series * } - if$ - } - if$ - } - { "" } - if$ -} - -FUNCTION {is.num} -{ chr.to.int$ - duplicate$ "0" chr.to.int$ < not - swap$ "9" chr.to.int$ > not and -} - -FUNCTION {extract.num} -{ duplicate$ 't := - "" 's := - { t empty$ not } - { t #1 #1 substring$ - t #2 global.max$ substring$ 't := - duplicate$ is.num - { s swap$ * 's := } - { pop$ "" 't := } - if$ - } - while$ - s empty$ - 'skip$ - { pop$ s } - if$ -} - -FUNCTION {convert.edition} -{ edition extract.num "l" change.case$ 's := - s "first" = s "1" = or - { bbl.first 't := } - { s "second" = s "2" = or - { bbl.second 't := } - { s "third" = s "3" = or - { bbl.third 't := } - { s "fourth" = s "4" = or - { bbl.fourth 't := } - { s "fifth" = s "5" = or - { bbl.fifth 't := } - { s #1 #1 substring$ is.num - { s eng.ord 't := } - { edition 't := } - if$ - } - if$ - } - if$ - } - if$ - } - if$ - } - if$ - t -} - -FUNCTION {format.edition} -{ edition empty$ - { "" } - { output.state mid.sentence = - { convert.edition "l" change.case$ " " * bbl.edition * } - { convert.edition "t" change.case$ " " * bbl.edition * } - if$ - } - if$ -} - -INTEGERS { multiresult } - -FUNCTION {multi.page.check} -{ 't := - #0 'multiresult := - { multiresult not - t empty$ not - and - } - { t #1 #1 substring$ - duplicate$ "-" = - swap$ duplicate$ "," = - swap$ "+" = - or or - { #1 'multiresult := } - { t #2 global.max$ substring$ 't := } - if$ - } - while$ - multiresult -} - -FUNCTION {format.pages} -{ pages empty$ - { "" } - { pages multi.page.check - { bbl.pages pages n.dashify tie.or.space.connect } - { bbl.page pages tie.or.space.connect } - if$ - } - if$ -} - -FUNCTION {format.journal.pages} -{ pages empty$ - 'skip$ - { duplicate$ empty$ - { pop$ format.pages } - { - " " * - format.year * " " * - pages n.dashify * - } - if$ - } - if$ -} - -FUNCTION {format.vol.num.pages} -{ - % volume field.or.null - " " - volume empty$ - { pop$ "" } - { volume * } - if$ - number empty$ - 'skip$ - { - "~(" number * ")" * * - volume empty$ - { "there's a number but no volume in " cite$ * warning$ } - 'skip$ - if$ - } - if$ -} - -FUNCTION {format.chapter.pages} -{ chapter empty$ - { "" } - { type empty$ - { bbl.chapter } - { type "l" change.case$ } - if$ - chapter tie.or.space.connect - } - if$ -} - -FUNCTION {format.in.ed.booktitle} -{ booktitle empty$ - { "" } - { editor empty$ - { word.in booktitle * } - { word.in format.in.editors * ", " * - booktitle * } - if$ - } - if$ -} - -FUNCTION {empty.misc.check} -{ author empty$ title empty$ howpublished empty$ - month empty$ year empty$ note empty$ - and and and and and - { "all relevant fields are empty in " cite$ * warning$ } - 'skip$ - if$ -} - -FUNCTION {format.thesis.type} -{ type empty$ - 'skip$ - { pop$ - type "t" change.case$ - } - if$ -} - -FUNCTION {format.tr.number} -{ type empty$ - { bbl.techrep } - 'type - if$ - number empty$ - { "t" change.case$ } - { number tie.or.space.connect } - if$ -} - -FUNCTION {format.article.crossref} -{ - key empty$ - { journal empty$ - { "need key or journal for " cite$ * " to crossref " * crossref * - warning$ - "" - } - { word.in journal emphasize * } - if$ - } - { word.in key * " " *} - if$ - " \cite{" * crossref * "}" * -} - -FUNCTION {format.crossref.editor} -{ editor #1 "{vv~}{ll}" format.name$ - editor num.names$ duplicate$ - #2 > - { pop$ - " " * bbl.etal * - } - { #2 < - 'skip$ - { editor #2 "{ff }{vv }{ll}{ jj}" format.name$ "others" = - { - " " * bbl.etal * - } - { bbl.and space.word * editor #2 "{vv~}{ll}" format.name$ - * } - if$ - } - if$ - } - if$ -} - -FUNCTION {format.book.crossref} -{ volume empty$ - { "empty volume in " cite$ * "'s crossref of " * crossref * warning$ - word.in - } - { bbl.volume volume tie.or.space.connect - bbl.of space.word * - } - if$ - editor empty$ - editor field.or.null author field.or.null = - or - { key empty$ - { series empty$ - { "need editor, key, or series for " cite$ * " to crossref " * - crossref * warning$ - "" * - } - { series emphasize * } - if$ - } - { key * } - if$ - } - { format.crossref.editor * } - if$ - " \cite{" * crossref * "}" * -} - -FUNCTION {format.incoll.inproc.crossref} -{ - editor empty$ - editor field.or.null author field.or.null = - or - { key empty$ - { booktitle empty$ - { "need editor, key, or booktitle for " cite$ * " to crossref " * - crossref * warning$ - "" - } - { word.in booktitle * } - if$ - } - { word.in key * " " *} - if$ - } - { word.in format.crossref.editor * " " *} - if$ - " \cite{" * crossref * "}" * -} - -FUNCTION {format.org.or.pub} -{ 't := - "" - year empty$ - { "empty year in " cite$ * warning$ } - 'skip$ - if$ - address empty$ t empty$ and - year empty$ and - 'skip$ - { - t empty$ - { address empty$ - 'skip$ - { address * } - if$ - } - { t * - address empty$ - 'skip$ - { ", " * address * } - if$ - } - if$ - year empty$ - 'skip$ - { t empty$ address empty$ and - 'skip$ - { ", " * } - if$ - year * - } - if$ - } - if$ -} - -FUNCTION {format.publisher.address} -{ publisher empty$ - { "empty publisher in " cite$ * warning$ - "" - } - { publisher } - if$ - format.org.or.pub -} - -FUNCTION {format.organization.address} -{ organization empty$ - { "" } - { organization } - if$ - format.org.or.pub -} - -FUNCTION {make.href.null} -{ - pop$ -} -FUNCTION {make.href.hypertex} -{ - "\special {html: }" * swap$ * - "\special {html:}" * -} -FUNCTION {make.href.hyperref} -{ - "\href {" swap$ * "} {\path{" * swap$ * "}}" * -} -FUNCTION {make.href} -{ hrefform #2 = - 'make.href.hyperref % hrefform = 2 - { hrefform #1 = - 'make.href.hypertex % hrefform = 1 - 'make.href.null % hrefform = 0 (or anything else) - if$ - } - if$ -} - -FUNCTION {format.url} -{ inlinelinks #1 = url empty$ or - { "" } - { hrefform #1 = - { % special case -- add HyperTeX specials - urlintro "\url{" url * "}" * url make.href.hypertex * } - { urlintro "\url{" * url * "}" * } - if$ - } - if$ -} - -FUNCTION {format.eprint} -{ eprint empty$ - { "" } - { eprintprefix eprint * eprinturl eprint * make.href } - if$ -} - -FUNCTION {format.doi} -{ doi empty$ - { "" } - { doiprefix doi * doiurl doi * make.href } - if$ -} - -FUNCTION {output.url} -{ url empty$ - 'skip$ - { new.block - format.url output - format.lastchecked output - } - if$ -} - -FUNCTION {output.web.refs} -{ - new.block - output.url - addeprints eprint empty$ not and - { format.eprint output.nonnull } - 'skip$ - if$ - adddoiresolver doi empty$ not and - { format.doi output.nonnull } - 'skip$ - if$ -} - -FUNCTION {output.bibitem} -{ outside.brackets 'bracket.state := - output.bibitem.original - inlinelinks url empty$ not and - { #1 'makeinlinelink := } - { #0 'makeinlinelink := } - if$ -} - -FUNCTION {fin.entry} -{ output.web.refs % urlbst - makeinlinelink % ooops, it appears we didn't have a title for inlinelink - { setup.inlinelink % add some artificial link text here, as a fallback - "[link]" output.nonnull } - 'skip$ - if$ - bracket.state close.brackets = % urlbst - { "]" * } - 'skip$ - if$ - fin.entry.original -} - -FUNCTION {webpage} -{ output.bibitem - author empty$ - { editor empty$ - 'skip$ % author and editor both optional - { format.editors output.nonnull } - if$ - } - { editor empty$ - { format.authors output.nonnull } - { "can't use both author and editor fields in " cite$ * warning$ } - if$ - } - if$ - new.block - title empty$ 'skip$ 'setup.inlinelink if$ - format.title "title" output.check - inbrackets "online" output - new.block - year empty$ - 'skip$ - { format.date "year" output.check } - if$ - % We don't need to output the URL details ('lastchecked' and 'url'), - % because fin.entry does that for us, using output.web.refs. The only - % reason we would want to put them here is if we were to decide that - % they should go in front of the rather miscellaneous information in 'note'. - new.block - note output - fin.entry -} - -FUNCTION {article} -{ output.bibitem - format.authors "author" output.check - title empty$ 'skip$ 'setup.inlinelink if$ % urlbst - format.title "title" output.check - crossref missing$ - { journal - "journal" output.check - % add.blank - before.all 'output.state := - format.vol.num.pages output - } - { format.article.crossref output.nonnull - format.pages output - } - if$ - format.journal.pages - format.note output - pages empty$ - { format.date "year" output.check } - 'skip$ - if$ - fin.entry - write.url -} - -FUNCTION {book} -{ output.bibitem - author empty$ - { format.editors "author and editor" output.check - } - { format.authors output.nonnull - crossref missing$ - { "author and editor" editor either.or.check } - 'skip$ - if$ - } - if$ - title empty$ 'skip$ 'setup.inlinelink if$ % urlbst - format.btitle "title" output.check - crossref missing$ - { format.edition output - format.bvolume output - format.number.series output - format.publisher.address output - } - { - format.book.crossref output.nonnull - } - if$ - format.note output - fin.entry - write.url -} - -FUNCTION {booklet} -{ output.bibitem - format.authors output - title empty$ 'skip$ 'setup.inlinelink if$ % urlbst - format.title "title" output.check - howpublished output - address output - format.note output - format.date "year" output.check - fin.entry - write.url -} - -FUNCTION {inbook} -{ output.bibitem - author empty$ - { format.editors "author and editor" output.check - } - { format.authors output.nonnull - crossref missing$ - { "author and editor" editor either.or.check } - 'skip$ - if$ - } - if$ - title empty$ 'skip$ 'setup.inlinelink if$ % urlbst - format.btitle "title" output.check - crossref missing$ - { - format.edition output - format.bvolume output - format.number.series output - format.publisher.address output - format.chapter.pages "chapter and pages" output.check - } - { - format.chapter.pages "chapter and pages" output.check - format.book.crossref output.nonnull - } - if$ - format.pages "pages" output.check - format.note output - fin.entry - write.url -} - -FUNCTION {incollection} -{ output.bibitem - format.authors "author" output.check - title empty$ 'skip$ 'setup.inlinelink if$ % urlbst - format.title "title" output.check - crossref missing$ - { format.in.ed.booktitle "booktitle" output.check - format.edition output - format.bvolume output - format.number.series output - format.publisher.address output - format.chapter.pages output - } - { format.incoll.inproc.crossref output.nonnull - format.chapter.pages output - } - if$ - format.pages "pages" output.check - format.note output - fin.entry - write.url -} - -FUNCTION {inproceedings} -{ output.bibitem - format.authors "author" output.check - title empty$ 'skip$ 'setup.inlinelink if$ % urlbst - format.title "title" output.check - crossref missing$ - { format.in.ed.booktitle "booktitle" output.check - format.edition output - format.bvolume output - format.number.series output - publisher empty$ - { format.organization.address output } - { organization output - format.publisher.address output - } - if$ - } - { format.incoll.inproc.crossref output.nonnull - } - if$ - format.pages "pages" output.check - format.note output - fin.entry - write.url -} - -FUNCTION {conference} { inproceedings } - -FUNCTION {manual} -{ output.bibitem - author empty$ - { organization empty$ - 'skip$ - { organization output.nonnull - address output - } - if$ - } - { format.authors output.nonnull } - if$ - title empty$ 'skip$ 'setup.inlinelink if$ % urlbst - format.btitle "title" output.check - author empty$ - { organization empty$ - { - address output - } - 'skip$ - if$ - } - { - organization output - address output - } - if$ - format.edition output - format.note output - format.date "year" output.check - fin.entry - write.url -} - -FUNCTION {mastersthesis} -{ output.bibitem - format.authors "author" output.check - title empty$ 'skip$ 'setup.inlinelink if$ % urlbst - format.title "title" output.check - bbl.mthesis format.thesis.type output.nonnull - school "school" output.check - address output - format.note output - format.date "year" output.check - fin.entry - write.url -} - -FUNCTION {misc} -{ output.bibitem - format.authors output - title empty$ 'skip$ 'setup.inlinelink if$ % urlbst - format.title output - howpublished output - format.note output - format.date "year" output.check - fin.entry - write.url - empty.misc.check -} - -FUNCTION {phdthesis} -{ output.bibitem - format.authors "author" output.check - title empty$ 'skip$ 'setup.inlinelink if$ % urlbst - format.title "title" output.check - bbl.phdthesis format.thesis.type output.nonnull - school "school" output.check - address output - format.note output - format.date "year" output.check - fin.entry - write.url -} - -FUNCTION {proceedings} -{ output.bibitem - editor empty$ - { organization output } - { format.editors output.nonnull } - if$ - title empty$ 'skip$ 'setup.inlinelink if$ % urlbst - format.btitle "title" output.check - format.bvolume output - format.number.series output - editor empty$ - { publisher empty$ - 'skip$ - { - format.publisher.address output - } - if$ - } - { publisher empty$ - { - format.organization.address output } - { - organization output - format.publisher.address output - } - if$ - } - if$ - format.note output - fin.entry - write.url -} - -FUNCTION {techreport} -{ output.bibitem - format.authors "author" output.check - title empty$ 'skip$ 'setup.inlinelink if$ % urlbst - format.title "title" output.check - format.tr.number output.nonnull - institution "institution" output.check - address output - format.note output - format.date "year" output.check - fin.entry - write.url -} - -FUNCTION {unpublished} -{ output.bibitem - format.authors "author" output.check - title empty$ 'skip$ 'setup.inlinelink if$ % urlbst - format.title "title" output.check - format.note "note" output.check - format.date "year" output.check - fin.entry - write.url -} - -FUNCTION {default.type} { misc } - -READ - -STRINGS { longest.label } - -INTEGERS { number.label longest.label.width } - -FUNCTION {initialize.longest.label} -{ "" 'longest.label := - #1 'number.label := - #0 'longest.label.width := -} - -FUNCTION {longest.label.pass} -{ number.label int.to.str$ 'label := - number.label #1 + 'number.label := - label width$ longest.label.width > - { label 'longest.label := - label width$ 'longest.label.width := - } - 'skip$ - if$ -} - -EXECUTE {initialize.longest.label} - -ITERATE {longest.label.pass} - -FUNCTION {begin.bib} -{ preamble$ empty$ - 'skip$ - { preamble$ write$ newline$ } - if$ - "\begin{thebibliography}{" longest.label * "}" * - write$ newline$ - "\expandafter\ifx\csname url\endcsname\relax" - write$ newline$ - " \def\url#1{\texttt{#1}}\fi" - write$ newline$ - "\expandafter\ifx\csname urlprefix\endcsname\relax\def\urlprefix{URL }\fi" - write$ newline$ - "\expandafter\ifx\csname href\endcsname\relax" - write$ newline$ - " \def\href#1#2{#2} \def\path#1{#1}\fi" - write$ newline$ -} - -EXECUTE {begin.bib} - -EXECUTE {init.urlbst.variables} -EXECUTE {init.state.consts} - -ITERATE {call.type$} - -FUNCTION {end.bib} -{ newline$ - "\end{thebibliography}" write$ newline$ -} - -EXECUTE {end.bib} -%% End of customized bst file -%% -%% End of file `elsarticle-num.bst'. - - diff --git a/MS/elsarticle.cls b/MS/elsarticle.cls deleted file mode 100755 index 02ff3a7..0000000 --- a/MS/elsarticle.cls +++ /dev/null @@ -1,1382 +0,0 @@ -%% -%% This is file `elsarticle.cls', -%% generated with the docstrip utility. -%% -%% The original source files were: -%% -%% elsarticle.dtx (with options: `class') -%% -%% Copyright 2007-2020 Elsevier Ltd -%% -%% This file is part of the 'Elsarticle Bundle'. -%% ------------------------------------------- -%% -%% It may be distributed under the conditions of the LaTeX Project Public -%% License, either version 1.2 of this license or (at your option) any -%% later version. The latest version of this license is in -%% http://www.latex-project.org/lppl.txt -%% and version 1.2 or later is part of all distributions of LaTeX -%% version 1999/12/01 or later. -%% -%% The list of all files belonging to the 'Elsarticle Bundle' is -%% given in the file `manifest.txt'. -%% -%% -%% -%% - \def\RCSfile{elsarticle}% - \def\RCSversion{3.3}% - \def\RCSdate{2020/11/20}% - \def\@shortjnl{\relax} - \def\@journal{Elsevier Ltd} - \def\@company{Elsevier Ltd} - \def\@issn{000-0000} - \def\@shortjid{elsarticle} -\NeedsTeXFormat{LaTeX2e}[1995/12/01] -\ProvidesClass{\@shortjid}[\RCSdate, \RCSversion: \@journal] -\def\ABD{\AtBeginDocument} -\newif\ifpreprint \preprintfalse -\newif\ifnonatbib \nonatbibfalse -\newif\iflongmktitle \longmktitlefalse -\newif\ifnopreprintline \nopreprintlinefalse -\newif\ifdoubleblind \doubleblindfalse - -\newif\ifuseexplthreefunctions \useexplthreefunctionsfalse - -\IfFileExists{expl3.sty}{% - \global\useexplthreefunctionstrue% - \RequirePackage{expl3}}{} -\ifuseexplthreefunctions\relax% -\IfFileExists{xparse.sty}{\RequirePackage{xparse}}{} -\IfFileExists{etoolbox.sty}{\RequirePackage{etoolbox}}{} -\fi - -\def\@blstr{1} -\newdimen\@bls -\@bls=\baselineskip - -\def\@finalWarning{% - *****************************************************\MessageBreak - This document is typeset in the CRC style which\MessageBreak - is not suitable for submission.\MessageBreak - \MessageBreak - Please typeset again using 'preprint' option\MessageBreak - for creating PDF suitable for submission.\MessageBreak - ******************************************************\MessageBreak -} - -\DeclareOption{preprint}{\global\preprinttrue - \gdef\@blstr{1}\xdef\jtype{0}% - \AtBeginDocument{\@twosidefalse\@mparswitchfalse}} -\DeclareOption{nopreprintline}{\global\nopreprintlinetrue} -\DeclareOption{final}{\gdef\@blstr{1}\global\preprintfalse} -\DeclareOption{review}{\global\preprinttrue\gdef\@blstr{1.5}} -\DeclareOption{authoryear}{\xdef\@biboptions{round,authoryear}} -\DeclareOption{number}{\xdef\@biboptions{numbers}} -\DeclareOption{numbers}{\xdef\@biboptions{numbers}} -\DeclareOption{nonatbib}{\global\nonatbibtrue} -\DeclareOption{longtitle}{\global\longmktitletrue} -\DeclareOption{5p}{\xdef\jtype{5}\global\preprintfalse - \ExecuteOptions{twocolumn}} - \def\jtype{0} -\DeclareOption{3p}{\xdef\jtype{3}\global\preprintfalse} -\DeclareOption{1p}{\xdef\jtype{1}\global\preprintfalse - \AtBeginDocument{\@twocolumnfalse}} -\DeclareOption{times}{\IfFileExists{txfonts.sty}% - {\AtEndOfClass{\RequirePackage{txfonts}% - \gdef\ttdefault{cmtt}% - \let\iint\relax - \let\iiint\relax - \let\iiiint\relax - \let\idotsint\relax - \let\openbox\relax}}{\AtEndOfClass{\RequirePackage{times}}}} - -\DeclareOption{endfloat}{\IfFileExists{endfloat.sty} - {\AtEndOfClass{\RequirePackage[markers]{endfloat}}}{}} -\DeclareOption{endfloats}{\IfFileExists{endfloat.sty} - {\AtEndOfClass{\RequirePackage[markers]{endfloat}}}{}} -\DeclareOption{numafflabel} - {\AtBeginDocument{\def\theaffn{\arabic{affn}}}} %*% -\DeclareOption{lefttitle} - {\AtBeginDocument{\def\elsarticletitlealign{flushleft}}} %*% -\DeclareOption{centertitle} - {\AtBeginDocument{\def\elsarticletitlealign{center}}} %*% -\DeclareOption{reversenotenum} - {\AtBeginDocument{\def\theaffn{\arabic{affn}} - \def\thefnote{\alph{fnote}}}} -\DeclareOption{doubleblind}{\doubleblindtrue} - -\ExecuteOptions{a4paper,10pt,oneside,onecolumn,number,preprint,centertitle} -\DeclareOption*{\PassOptionsToClass{\CurrentOption}{article}} -\ProcessOptions -\LoadClass{article} -\RequirePackage{graphicx} -\let\comma\@empty -\let\tnotesep\@empty -\let\@title\@empty - -\def\useelstitle{} - -\def\title#1{\g@addto@macro\@title{#1% - \global\let\tnoteref\@gobble}% - \g@addto@macro\useelstitle{#1}} - -\def\elsLabel#1{\@bsphack\protected@write\@auxout{}% - {\string\Newlabel{#1}{\@currentlabel}}\@esphack} -\def\Newlabel#1#2{\expandafter\xdef\csname X@#1\endcsname{#2}} - -\def\elsRef#1{\@ifundefined{X@#1}{0}{\csname X@#1\endcsname}} - -\let\@tnotemark\@empty - -\ifdoubleblind - \def\tnotemark[#1]{} -\else - \def\tnotemark[#1]{\@for\mytmark:=#1\do{% - \expandafter\ifcase\elsRef{\mytmark}\or$^{\star}$\or - $^{,\star\star}$\fi - }% -} -\fi - -\def\tnoteref#1{\tnotemark[{#1}]} -\let\@tnotes\@empty -\newcounter{tnote} -\def\tnotetext[#1]#2{\g@addto@macro\@tnotes{% - \stepcounter{tnote}\elsLabel{#1}% - \def\thefootnote{\ifcase\c@tnote\or$\star$\or$\star\star$\fi}% - \footnotetext{#2}}} - -\let\@nonumnotes\@empty -\def\nonumnote#1{\g@addto@macro\@nonumnotes{% - \let\thefootnote\relax\footnotetext{#1}}} - -\newcounter{fnote} -\def\thefnote{\arabic{fnote}} -\def\fnmark[#1]{\let\comma\@empty - \def\@fnmark{\@for\@@fnmark:=#1\do{% - \edef\fnotenum{\@ifundefined{X@\@@fnmark}{1}{\elsRef{\@@fnmark}}}% - \unskip\comma\fnotenum\let\comma,}}% -} - -\def\fnref#1{\fnmark[#1]} - -\let\@fnotes\@empty\let\@fnmark\@empty -\def\fntext[#1]#2{\g@addto@macro\@fnotes{% - \refstepcounter{fnote}\elsLabel{#1}% - \def\thefootnote{\c@fnote}% - \global\setcounter{footnote}{\c@fnote}% - \footnotetext{#2}}} - -\def\cormark[#1]{\edef\cnotenum{\elsRef{#1}}% - \unskip\textsuperscript{\sep\ifcase\cnotenum\or - $\ast$\or$\ast\ast$\fi\hspace{-1pt}}\let\sep=,} - -\let\@cormark\@empty -\let\@cornotes\@empty -\newcounter{cnote} -\def\cortext[#1]#2{\g@addto@macro\@cornotes{% - \refstepcounter{cnote}\elsLabel{#1}% - \def\thefootnote{\ifcase\thecnote\or$\ast$\or - $\ast\ast$\fi}% - \footnotetext{#2}}} - -\let\@corref\@empty -\def\corref#1{\edef\cnotenum{\elsRef{#1}}% - \edef\@corref{\ifcase\cnotenum\or - $\ast$\or$\ast\ast$\fi\hskip-1pt}} - -\def\resetTitleCounters{\c@cnote=0 - \c@fnote=0 \c@tnote=0 \c@footnote=0} - -\let\eadsep\@empty -\def\@elseads{} -\let\@elsuads\@empty -\let\@cormark\@empty -\def\hashchar{\expandafter\@gobble\string\~} -\def\underscorechar{\expandafter\@gobble\string\_} -\def\lbracechar{\expandafter\@gobble\string\{} -\def\rbracechar{\expandafter\@gobble\string\}} - -\gdef\ead{\@ifnextchar[{\@uad}{\@ead}} -\gdef\@ead#1{\bgroup - \def\_{\underscorechar}% - \def\{{\lbracechar}% - \def~{\hashchar}% - \def\}{\rbracechar}% - \edef\tmp{\the\@eadauthor}% - \immediate\write\@auxout{\string\emailauthor - {#1}{\expandafter\strip@prefix\meaning\tmp}}% - \egroup -} -\newcounter{ead} -\gdef\emailauthor#1#2{\stepcounter{ead}% - \g@addto@macro\@elseads{\raggedright% - \let\corref\@gobble\def\@@tmp{#1}% - \eadsep{\ttfamily\expandafter\strip@prefix\meaning\@@tmp} - (#2)\def\eadsep{\unskip,\space}}% -} -\gdef\@uad[#1]#2{\bgroup - \def~{\hashchar}% - \def\_{\underscorechar}% - \def~{\hashchar}% - \def\}{\rbracechar}% - \edef\tmp{\the\@eadauthor} - \immediate\write\@auxout{\string\urlauthor - {#2}{\expandafter\strip@prefix\meaning\tmp}}% - \egroup -} -\gdef\urlauthor#1#2{\g@addto@macro\@elsuads{\let\corref\@gobble% - \def\@@tmp{#1}\raggedright\eadsep - {\ttfamily\expandafter\strip@prefix\meaning\@@tmp}\space(#2)% - \def\eadsep{\unskip,\space}}% -} - -\def\elsauthors{} -\def\useauthors{} -\def\elsprelimauthors{} - -\def\pprinttitle{} -\let\authorsep\@empty -\let\prelimauthorsep\@empty -\let\sep\@empty -\newcounter{author} -\def\author{\@ifnextchar[{\@@author}{\@author}} - -\newtoks\@eadauthor -\def\@@author[#1]#2{% - \g@addto@macro\elsprelimauthors{% - \prelimauthorsep#2% - \def\prelimauthorsep{\unskip,\space}}% - \g@addto@macro\elsauthors{% - \def\baselinestretch{1}% - \authorsep#2\unskip\textsuperscript{%#1% - \@for\@@affmark:=#1\do{% - \edef\affnum{\@ifundefined{X@\@@affmark}{1}{\elsRef{\@@affmark}}}% - \unskip\sep\affnum\let\sep=,}% - \ifx\@fnmark\@empty\else\unskip\sep\@fnmark\let\sep=,\fi - \ifx\@corref\@empty\else\unskip\sep\@corref\let\sep=,\fi - }% - \def\authorsep{\unskip,\space}% - \global\let\sep\@empty\global\let\@corref\@empty - \global\let\@fnmark\@empty}% - \@eadauthor={#2}% - \g@addto@macro\useauthors{#2; }% -} - -\def\@author#1{% - \g@addto@macro\elsprelimauthors{% - \prelimauthorsep#1% - \def\prelimauthorsep{\unskip,\space}}% - \g@addto@macro\elsauthors{\normalsize% - \def\baselinestretch{1}% - \upshape\authorsep#1\unskip\textsuperscript{% - \ifx\@fnmark\@empty\else\unskip\sep\@fnmark\let\sep=,\fi - \ifx\@corref\@empty\else\unskip\sep\@corref\let\sep=,\fi - }% - \def\authorsep{\unskip,\space}% - \global\let\@fnmark\@empty - \global\let\@corref\@empty \global\let\sep\@empty}% - \@eadauthor={#1}% - \g@addto@macro\useauthors{#1; }% -} - -\AtBeginDocument{% - \@ifpackageloaded{hyperref}{% - \expandafter\gdef\csname Hy@title\endcsname{\useelstitle}% - \expandafter\gdef\csname Hy@author\endcsname{\useauthors}% - }{} -} - -\def\elsaddress{} -\def\addsep{\par\vskip6pt} - -\def\@alph#1{% - \ifcase#1\or a\or b\or c\or d\or e\or f\or g\or h\or i\or j\or k\or - l\or m\or n\or o\or p\or q\or r\or s\or t\or u\or v\or w\or x\or - y\or z% - \or aa\or ab\or ac\or ad\or ae\or af\or ag\or ah\or ai\or aj\or - ak\or al\or am\or an\or ao\or ap\or aq\or ar\or as\or at\or au\or - av\or aw\or ax\or ay\or az% - \or ba\or bb\or bc\or bd\or be\or bf\or bg\or bh\or bi\or bj\or - bk\or bl\or bm\or bn\or bo\or bp\or bq\or br\or bs\or bt\or bu\or - bv\or bw\or bx\or by\or bz% - \or ca\or cb\or cc\or cd\or ce\or cf\or cg\or ch\or ci\or cj\or - ck\or cl\or cm\or cn\or co\or cp\or cq\or cr\or cs\or ct\or cu\or - cv\or cw\or cx\or cy\or cz% - \or da\or db\or dc\or dd\or de\or df\or dg\or dh\or di\or dj\or - dk\or dl\or dm\or dn\or do\or dp\or dq\or dr\or ds\or dt\or du\or - dv\or dw\or dx\or dy\or dz% - \or ea\or eb\or ec\or ed\or ee\or ef\or eg\or eh\or ei\or ej\or - ek\or el\or em\or en\or eo\or ep\or eq\or er\or es\or et\or eu\or - ev\or ew\or ex\or ey\or ez% - \or fa\or fb\or fc\or fd\or fe\or ff\or fg\or fh\or fi\or fj\or - fk\or fl\or fm\or fn\or fo\or fp\or fq\or fr\or fs\or ft\or fu\or - fv\or fw\or fx\or fy\or fz% - \or ga\or gb\or gc\or gd\or ge\or gf\or gg\or gh\or gi\or gj\or - gk\or gl\or gm\or gn\or go\or gp\or gq\or gr\or gs\or gt\or gu\or - gv\or gw\or gx\or gy\or gz% - \else\@ctrerr\fi} - -\newcounter{affn} -\renewcommand\theaffn{\alph{affn}} - -\ifuseexplthreefunctions\relax% - \ExplSyntaxOn - \def\ca_affitem_postskip{\mbox{~}\unskip\ignorespaces} - %%Author Address - \DeclareDocumentCommand \ca_organization { O{,} m } - { - % #2 #1\mbox{~}\unskip\ignorespaces - \csgappto { ca_affiliation_values } { #2 #1\ca_affitem_postskip } - } - \DeclareDocumentCommand \ca_postal_code { O{,} m } - { - % #2 #1\mbox{~}\unskip\ignorespaces - \csgappto { ca_affiliation_values } { #2 #1\ca_affitem_postskip } - } - \DeclareDocumentCommand \ca_aff_city { O{,} m } - { - % #2 #1\mbox{~}\unskip\ignorespaces - \csgappto { ca_affiliation_values } { #2 #1\ca_affitem_postskip } - } - \DeclareDocumentCommand \ca_address_line { O{,}m } - { - % #2 #1\mbox{~}\unskip\ignorespaces - \csgappto { ca_affiliation_values } { #2 #1\ca_affitem_postskip } - } - \DeclareDocumentCommand \ca_state { O{,} m } - { - % #2 #1\mbox{~}\unskip\ignorespaces - \csgappto { ca_affiliation_values } { #2 #1\ca_affitem_postskip } - } - \DeclareDocumentCommand \ca_country { O{ } m } - { - % #2 #1 - \csgappto { ca_affiliation_values } { #2 #1 } - } - - \DeclareDocumentCommand \ca_stm_organization { O{,} m } - { - #2 #1\ca_affitem_postskip - } - \DeclareDocumentCommand \ca_stm_postal_code { O{,} m } - { - #2 #1\ca_affitem_postskip - } - \DeclareDocumentCommand \ca_stm_aff_city { O{,} m } - { - #2 #1\ca_affitem_postskip - } - \DeclareDocumentCommand \ca_stm_aff_address_line { O{,}m } - { - #2 #1\ca_affitem_postskip - } - \DeclareDocumentCommand \ca_stm_state { O{,} m } - { - #2 #1\ca_affitem_postskip - } - \DeclareDocumentCommand \ca_stm_country { O{ } m } - { - #2 #1 - } - - \keys_define:nn { stm / affiliation } - { - op .tl_set_x:N = \l_organization_punc_tl, - oraganizationsep .tl_set_x:N = \l_organization_punc_tl, - ap .tl_set_x:N = \l_address_line_punc_tl, - addresslinesep .tl_set_x:N = \l_address_line_punc_tl, - cp .tl_set_x:N = \l_city_punc_tl, - citysep .tl_set_x:N = \l_city_punc_tl, - pp .tl_set_x:N = \l_postal_code_punc_tl, - postcodesep .tl_set_x:N = \l_postal_code_punc_tl, - sp .tl_set_x:N = \l_state_punc_tl, - statesep .tl_set_x:N = \l_state_punc_tl, - o .code:n = { \ca_organization[\l_organization_punc_tl]{#1} }, - organization .code:n = { \ca_organization[\l_organization_punc_tl]{#1} }, - a .code:n = { \ca_address_line[\l_address_line_punc_tl]{#1} }, - addressline .code:n = { \ca_address_line[\l_address_line_punc_tl]{#1} }, - c .code:n = { \ca_aff_city[\l_city_punc_tl]{#1} }, - city .code:n = { \ca_aff_city[\l_city_punc_tl]{#1} }, - p .code:n = { \ca_postal_code[\l_postal_code_punc_tl]{#1} }, - postcode .code:n = { \ca_postal_code[\l_postal_code_punc_tl]{#1} }, - s .code:n = { \ca_state[\l_state_punc_tl]{#1} }, - state .code:n = { \ca_state[\l_state_punc_tl]{#1} }, - orp .tl_set_x:N = \l_organization_punc_tl, - adp .tl_set_x:N = \l_address_line_punc_tl, - cip .tl_set_x:N = \l_city_punc_tl, - pcp .tl_set_x:N = \l_postal_code_punc_tl, - stp .tl_set_x:N = \l_state_punc_tl, - cyp .tl_set_x:N = \l_country_punc_tl, - or .code:n = { \ca_organization[\l_organization_punc_tl]{#1} }, - ad .code:n = { \ca_address_line[\l_address_line_punc_tl]{#1} }, - ci .code:n = { \ca_aff_city[\l_city_punc_tl]{#1} }, - pc .code:n = { \ca_postal_code[\l_postal_code_punc_tl]{#1} }, - st .code:n = { \ca_state[\l_state_punc_tl]{#1} }, - cy .code:n = { \ca_country[\l_country_punc_tl]{#1} }, - country .code:n = { \ca_country[\l_country_punc_tl]{#1} }, - unknown .code:n = { - \ifstrempty { #1 } { - \csxappto { ca_affiliation_values } - { {\l_keys_key_tl}~ } - } { - \csxappto { ca_affiliation_values } - { {#1}~ } - } - } - } - - \cs_set:Npn \__reset_affiliation: - { - \tl_gset:Nn \l_organization_punc_tl { , } - \tl_gset:Nn \l_address_line_punc_tl { , } - \tl_gset:Nn \l_city_punc_tl { , } - \tl_gset:Nn \l_postal_code_punc_tl { , } - \tl_gset:Nn \l_state_punc_tl { , } - \tl_gset:Nn \l_country_punc_tl { } - } - - \DeclareDocumentCommand\affiliation{ o m }{ - \__reset_affiliation: - \csgdef { ca_affiliation_values } { } - \IfNoValueTF { #2 } - { } - { - \keys_set:nn { stm / affiliation } { #2 } - } - \csgappto{elsaddress}{ - \def\baselinestretch{1}% - \refstepcounter{affn} - \xdef\@currentlabel{\theaffn} - \IfNoValueTF { #1 } - { } - { \elsLabel{#1} } - \textsuperscript{\theaffn}} - \csxappto{elsaddress}{ - \csuse { ca_affiliation_values } - \par - } - } - \ExplSyntaxOff - \else% - \def\caaffitempostskip{\space} - - \DeclareRobustCommand\caorganization[2][,]{% - \g@addto@macro\caaffiliationvalues{#2#1\caaffitempostskip}% - } - \DeclareRobustCommand\capostalcode[2][,]{% - \g@addto@macro\caaffiliationvalues{#2#1\caaffitempostskip}% - } - \DeclareRobustCommand\caaffcity[2][,]{% - \g@addto@macro\caaffiliationvalues{#2#1\caaffitempostskip}% - } - \DeclareRobustCommand\caaddressline[2][,]{% - \g@addto@macro\caaffiliationvalues{#2#1\caaffitempostskip}% - } - \DeclareRobustCommand\castate[2][,]{% - \g@addto@macro\caaffiliationvalues{#2#1\caaffitempostskip}% - } - \DeclareRobustCommand\cacountry[2][,]{% - \g@addto@macro\caaffiliationvalues{#2#1\caaffitempostskip}% - } - \DeclareRobustCommand\castmorganization[2][,]{% - #2#1\caaffitempostskip% - } - \DeclareRobustCommand\castmpostalcode[2][,]{% - #2#1\caaffitempostskip% - } - \DeclareRobustCommand\castmaffcity[2][,]{% - #2#1\caaffitempostskip% - } - \DeclareRobustCommand\castmaddressline[2][,]{% - #2#1\caaffitempostskip% - } - \DeclareRobustCommand\castmstate[2][,]{% - #2#1\caaffitempostskip% - } - \DeclareRobustCommand\castmcountry[2][,]{% - #2#1\caaffitempostskip% - } - - \define@key{affiliation}{op}{\xdef\@organizationpunc{#1}} - \define@key{affiliation}{orp}{\xdef\@organizationpunc{#1}} - \define@key{affiliation}{organizationsep}{\xdef\@organizationpunc{#1}} - \define@key{affiliation}{ap}{\xdef\@addresslinepunc{#1}} - \define@key{affiliation}{adp}{\xdef\@addresslinepunc{#1}} - \define@key{affiliation}{addresslinesep}{\xdef\@addresslinepunc{#1}} - \define@key{affiliation}{cp}{\xdef\@citypunc{#1}} - \define@key{affiliation}{cip}{\xdef\@citypunc{#1}} - \define@key{affiliation}{cyp}{\xdef\@countrypunc{#1}} - \define@key{affiliation}{citysep}{\xdef\@citypunc{#1}} - \define@key{affiliation}{pp}{\xdef\@postcodepunc{#1}} - \define@key{affiliation}{pop}{\xdef\@postcodepunc{#1}} - \define@key{affiliation}{postcodesep}{\xdef\@postcodepunc{#1}} - \define@key{affiliation}{sp}{\xdef\@statepunc{#1}} - \define@key{affiliation}{stp}{\xdef\@statepunc{#1}} - \define@key{affiliation}{statesep}{\xdef\@statepunc{#1}} - \define@key{affiliation}{countrysep}{\xdef\@countrypunc{#1}} - - \define@key{affiliation}{organization}{% - \caorganization[\@organizationpunc]{#1}} - \define@key{affiliation}{addressline}{% - \caaddressline[\@addresslinepunc]{#1}} - \define@key{affiliation}{city}{% - \caaffcity[\@citypunc]{#1}} - \define@key{affiliation}{postcode}{% - \capostalcode[\@postcodepunc]{#1}} - \define@key{affiliation}{state}{% - \castate[\@statepunc]{#1}} - \define@key{affiliation}{or}{% - \caorganization[\@organizationpunc]{#1}} - \define@key{affiliation}{ad}{% - \caaddressline[\@addresslinepunc]{#1}} - \define@key{affiliation}{ci}{% - \caaffcity[\@citypunc]{#1}} - \define@key{affiliation}{po}{% - \capostalcode[\@postcodepunc]{#1}} - \define@key{affiliation}{st}{% - \castate[\@statepunc]{#1}} - \define@key{affiliation}{o}{% - \caorganization[\@organizationpunc]{#1}} - \define@key{affiliation}{a}{% - \caaddressline[\@addresslinepunc]{#1}} - \define@key{affiliation}{c}{% - \cacity[\@citypunc]{#1}} - \define@key{affiliation}{p}{% - \capostcode[\@postcodepunc]{#1}} - \define@key{affiliation}{s}{% - \castate[\@statepunc]{#1}} - \define@key{affiliation}{cy}{% - \cacountry[\@countrypunc]{#1}} - \define@key{affiliation}{country}{% - \cacountry[\@countrypunc]{#1}} - - \gdef\@resetaffiliation{% - \gdef\@organizationpunc{,}% - \gdef\@addresslinepunc{,}% - \gdef\@citypunc{,}% - \gdef\@statepunc{,}% - \gdef\@postcodepunc{,}% - \gdef\@countrypunc{}% - } - - \def\affiliation{\@ifnextchar[{\@@affiliation}{\@affiliation}} - - \newcommand*{\newstmrobustcmd}{} - \protected\def\newstmrobustcmd{\@star@or@long\stmetb@new@command} - - \def\stmetb@new@command#1{\@testopt{\stmetb@newcommand#1}0} - - \def\stmetb@newcommand#1[#2]{% - \@ifnextchar[%] - {\stmetb@xargdef#1[#2]} - {\ifx\l@ngrel@x\relax - \let\l@ngrel@x\protected - \else - \protected\def\l@ngrel@x{\protected\long}% - \fi - \@argdef#1[#2]}} - - \long\def\stmetb@xargdef#1[#2][#3]#4{% - \@ifdefinable#1{% - \expandafter\protected - \expandafter\def - \expandafter#1% - \expandafter{% - \expandafter\@testopt - \csname\string#1\endcsname{#3}}% - \expandafter\@yargdef\csname\string#1\endcsname\tw@{#2}{#4}}} - % - \newcommand{\ifstmundef}[1]{% - \ifdefined#1% - \ifx#1\relax - \expandafter\expandafter - \expandafter\@firstoftwo - \else - \expandafter\expandafter - \expandafter\@secondoftwo - \fi - \else - \expandafter\@firstoftwo - \fi} - \newcommand{\stmexpandonce}[1]{% - \unexpanded\expandafter{#1}} - \newstmrobustcmd{\gstmappto}[2]{% - \ifundef{#1} - {\xdef#1{\unexpanded{#2}}} - {\xdef#1{\stmexpandonce#1\unexpanded{#2}}}} - \newstmrobustcmd{\xstmappto}[2]{% - \ifstmundef{#1} - {\xdef#1{#2}} - {\xdef#1{\stmexpandonce#1#2}}} - - \long\def\@@affiliation[#1]#2{% - \@resetaffiliation% - \gdef\caaffiliationvalues{}% - \elsLabel{#1}% - \setkeys{affiliation}{#2}% - \g@addto@macro\elsaddress{% - \def\baselinestretch{1}% - \refstepcounter{affn}% - \xdef\@currentlabel{\theaffn}% - \elsLabel{#1}% - \textsuperscript{\theaffn}} - \xstmappto\elsaddress{\caaffiliationvalues\par}} - - \long\def\@affiliation#1{% - \@resetaffiliation% - \gdef\caaffiliationvalues{}% - \setkeys{affiliation}{#1}% - \g@addto@macro\elsauthors{% - \def\baselinestretch{1}}% - \xstmappto\elsaddress{\caaffiliationvalues\par}} -\fi - -\def\address{\@ifnextchar[{\@@address}{\@address}} - -\long\def\@@address[#1]#2{\g@addto@macro\elsaddress{% - \def\baselinestretch{1}% - \refstepcounter{affn} - \xdef\@currentlabel{\theaffn} - \elsLabel{#1}% - \textsuperscript{\theaffn}#2\par}} - -\long\def\@address#1{\g@addto@macro\elsauthors{% - \def\baselinestretch{1}% - \addsep\footnotesize\itshape#1\def\addsep{\par\vskip6pt}% - \def\authorsep{\par\vskip8pt}}} - -\newbox\absbox -\let\@elsarticleabstitle\@empty %*% -\def\abstracttitle#1{\gdef\@elsarticleabstitle{#1}} %*% -\abstracttitle{Abstract} %*% -\renewenvironment{abstract}{\global\setbox\absbox=\vbox\bgroup - \hsize=\textwidth\def\baselinestretch{1}% - \noindent\unskip\textbf{\@elsarticleabstitle} %*% - \par\medskip\noindent\unskip\ignorespaces} - {\egroup} - -\newbox\elsarticlehighlightsbox -\newbox\elsarticlegrabsbox -\def\@elsarticlehighlightstitle{Highlights} -\def\@elsarticlegrabstitle{Graphical Abstract} -\newif\ifelsprelimpagegrabs\global\elsprelimpagegrabsfalse -\newif\ifelsprelimpagehl\global\elsprelimpagehlfalse -\def\elsarticleprelims{% - \ifelsprelimpagegrabs\relax% - \thispagestyle{empty}% - \unvbox\elsarticlegrabsbox% - \pagebreak\clearpage% - \fi% - \ifelsprelimpagehl\relax% - \thispagestyle{empty} - \unvbox\elsarticlehighlightsbox% - \pagebreak\clearpage% - \setcounter{page}{1}% - \fi% -} -\newenvironment{highlights}{% - \global\elsprelimpagehltrue% - \global\setbox\elsarticlehighlightsbox=\vbox\bgroup - \hsize=\textwidth\def\baselinestretch{1}% - \noindent\unskip{\Large\@elsarticlehighlightstitle}%*% - \par\vskip12pt\noindent\unskip\ignorespaces\textbf{\@title}% - \ifx\elsprelimauthors\@empty\relax\else% - \par\vskip6pt\noindent\unskip\ignorespaces\elsprelimauthors% - \fi% - \par\medskip\noindent\unskip\ignorespaces - \begin{itemize} - } - {\end{itemize} - \egroup} -\newenvironment{graphicalabstract}{% - \global\elsprelimpagegrabstrue% - \global\setbox\elsarticlegrabsbox=\vbox\bgroup - \hsize=\textwidth\def\baselinestretch{1}% - \noindent\unskip{\Large\@elsarticlegrabstitle}%*% - \par\vskip12pt\noindent\unskip\ignorespaces\textbf{\@title}% - \ifx\elsprelimauthors\@empty\relax\else% - \par\vskip6pt\noindent\unskip\ignorespaces\elsprelimauthors% - \fi% - \par\medskip\noindent\unskip\ignorespaces} - {\egroup} - -\newbox\keybox -\let\@elsarticlekwdtitle\@empty %*% -\def\keywordtitle#1{\gdef\@elsarticlekwdtitle{#1}} %*% -\def\keywordtitlesep#1{\gdef\@elsarticlekeywordtitlesep{#1}} %*% -\keywordtitle{Keywords} %*% -\keywordtitlesep{:\ } -\def\keyword{% - \def\sep{\unskip, }% - \def\MSC{\@ifnextchar[{\@MSC}{\@MSC[2000]}} - \def\@MSC[##1]{\par\leavevmode\hbox {\it ##1~MSC:\space}}% - \def\PACS{\par\leavevmode\hbox {\it PACS:\space}}% - \def\JEL{\par\leavevmode\hbox {\it JEL:\space}}% - \global\setbox\keybox=\vbox\bgroup\hsize=\textwidth - \normalsize\normalfont\def\baselinestretch{1} - \parskip\z@ - \noindent\textit{\@elsarticlekwdtitle\@elsarticlekeywordtitlesep} - \raggedright % Keywords are not justified. - \ignorespaces} -\def\endkeyword{\par \egroup} - -\newdimen\Columnwidth -\Columnwidth=\columnwidth - -\def\printFirstPageNotes{% - \iflongmktitle - \let\columnwidth=\textwidth - \fi -\ifdoubleblind -\else - \ifx\@tnotes\@empty\else\@tnotes\fi - \ifx\@nonumnotes\@empty\else\@nonumnotes\fi - \ifx\@cornotes\@empty\else\@cornotes\fi - \ifx\@elseads\@empty\relax\else - \let\thefootnote\relax - \footnotetext{\ifnum\theead=1\relax - \textit{Email address:\space}\else - \textit{Email addresses:\space}\fi - \@elseads}\fi - \ifx\@elsuads\@empty\relax\else - \let\thefootnote\relax - \footnotetext{\textit{URL:\space}% - \@elsuads}\fi -\fi - \ifx\@fnotes\@empty\else\@fnotes\fi - \iflongmktitle\if@twocolumn - \let\columnwidth=\Columnwidth\fi\fi -} - -%% Pushing text to begin on newpage %*% -\def\newpage@after@title{title} -\def\newpage@after@subtitle{subtitle} -\def\newpage@after@author{author} -\def\newpage@after@abstract{abstract} -\def\newpageafter#1% - {\gdef\@elsarticlenewpageafter{#1}} - -\long\def\pprintMaketitle{\clearpage - \iflongmktitle\if@twocolumn\let\columnwidth=\textwidth\fi\fi - \resetTitleCounters - \def\baselinestretch{1}% - \printFirstPageNotes - \begin{\elsarticletitlealign}% - \thispagestyle{pprintTitle}% - \def\baselinestretch{1}% - \Large\@title\par\vskip18pt% - \ifx\@elsarticlenewpageafter\newpage@after@title% %*% - \newpage - \fi% - \ifdoubleblind - \vspace*{2pc} - \else - \normalsize\elsauthors\par\vskip10pt - \footnotesize\itshape\elsaddress\par\vskip36pt - \fi - \ifx\@elsarticlenewpageafter\newpage@after@author% %*% - \newpage - \fi% - \hrule\vskip12pt - \ifvoid\absbox\else\unvbox\absbox\par\vskip10pt\fi - \ifvoid\keybox\else\unvbox\keybox\par\vskip10pt\fi - \ifvoid\absbox\else\hrule\vskip12pt\fi - \ifx\@elsarticlenewpageafter\newpage@after@abstract% %*% - \newpage - \fi% - \end{\elsarticletitlealign}% - \gdef\thefootnote{\arabic{footnote}}% - } - -\def\printWarning{% - \mbox{}\par\vfill\par\bgroup - \fboxsep12pt\fboxrule1pt - \hspace*{.18\textwidth} - \fcolorbox{gray50}{gray10}{\box\warnbox} - \egroup\par\vfill\thispagestyle{empty} - \setcounter{page}{0} - \clearpage} - -\long\def\finalMaketitle{% - \resetTitleCounters - \def\baselinestretch{1}% - \MaketitleBox - \thispagestyle{pprintTitle}% - \gdef\thefootnote{\arabic{footnote}}% - } - -\long\def\MaketitleBox{% - \resetTitleCounters - \def\baselinestretch{1}% - \begin{\elsarticletitlealign}% - \def\baselinestretch{1}% - \Large\@title\par\vskip18pt - \ifdoubleblind - \vspace*{2pc} - \else - \normalsize\elsauthors\par\vskip10pt - \footnotesize\itshape\elsaddress\par\vskip36pt - \fi - \hrule\vskip12pt - \ifvoid\absbox\else\unvbox\absbox\par\vskip10pt\fi - \ifvoid\keybox\else\unvbox\keybox\par\vskip10pt\fi - \ifvoid\absbox\else\hrule\vskip12pt\fi - \end{\elsarticletitlealign}% -} - -\def\FNtext#1{\par\bgroup\footnotesize#1\egroup} -\newdimen\space@left -\def\alarm#1{\typeout{******************************}% - \typeout{#1}% - \typeout{******************************}% -} - -\def\titlespancalculator#1#2#3#4{% - % break count - \@tempcnta=#4\relax% - % pagebreakcount increment - \advance\@tempcnta by 1\relax% - % title page height - \@tempdima=#1\relax% - % Page height - title page notes height (only for first break) - % Page height - textheight (for remaining breaks) - % Page height - title page notes height - \@tempdimb=#2\relax% - % Remaining title page height - \advance\@tempdima -\the\@tempdimb% - % Checks if remaining title page - % height less than textheight - \ifdim\the\@tempdima>#3\relax% - \titlespancalculator% - {\the\@tempdima}{#3}{#3}{\the\@tempcnta}%Break again - \else% - % Save break count and exit. - \xdef\savetitlepagespan{\the\@tempcnta}% - \fi% -}% - -\long\def\myfor#1#2#3{% - \@tempcnta=#1\relax% - \ifnum#1<#2\relax% - \advance\@tempcnta by 1\relax% - #3% - \myfor{\the\@tempcnta}{#2}{#3}% - \fi} - -\long\def\getSpaceLeft{%\global\@twocolumnfalse% - \global\setbox0=\vbox{\hsize=\textwidth\MaketitleBox}% - \global\setbox1=\vbox{\hsize=\textwidth - \let\footnotetext\FNtext - \printFirstPageNotes}% - \xdef\noteheight{\the\ht1}% - \xdef\titleheight{\the\ht0}% - \@tempdima=\vsize - \advance\@tempdima-\noteheight - \advance\@tempdima-1\baselineskip - \xdef\savefpageheight{\the\@tempdima}% - \setbox2=\vbox{\titlespancalculator{\titleheight}% - {\savefpageheight}{\textheight}{0}}% -} - - \skip\footins=24pt - -\newbox\els@boxa -\newbox\els@boxb - -\ifpreprint - \def\maketitle{\elsarticleprelims\pprintMaketitle} - \else - \ifnum\jtype=1 - \def\maketitle{% - \elsarticleprelims% - \iflongmktitle\getSpaceLeft - \ifdim\noteheight>0pt% - \advance\@tempdima-1.35\baselineskip - \fi% - \global\setbox\els@boxa=\vsplit0 to \@tempdima - \box\els@boxa\par\resetTitleCounters - \thispagestyle{pprintTitle}% - \printFirstPageNotes - \ifnum\savetitlepagespan>1\relax% - \myfor{2}{\savetitlepagespan}{% - \global\setbox\els@boxb=\vsplit0 to \textheight%\@tempdima - \box\els@boxb} - \else% - \fi% - \box0% - \else - \finalMaketitle\printFirstPageNotes - \fi - \gdef\thefootnote{\arabic{footnote}}}% - \else - \ifnum\jtype=5 - \def\maketitle{% - \elsarticleprelims% - \iflongmktitle\getSpaceLeft - \ifdim\noteheight>0pt% - \advance\@tempdima-1.35\baselineskip - \fi% - \global\setbox\els@boxa=\vsplit0 to \@tempdima - \box\els@boxa\par\resetTitleCounters - \thispagestyle{pprintTitle}% - \printFirstPageNotes - \ifnum\savetitlepagespan>1\relax% - \myfor{2}{\savetitlepagespan}{% - \global\setbox\els@boxb=\vsplit0 to \textheight%\@tempdima - \twocolumn[\box\els@boxb]} - \else% - \fi% - \twocolumn[\box0]%\printFirstPageNotes - \else - \twocolumn[\finalMaketitle]\printFirstPageNotes - \fi - \gdef\thefootnote{\arabic{footnote}}} - \else - \if@twocolumn - \def\maketitle{% - \elsarticleprelims% - \iflongmktitle\getSpaceLeft - \ifdim\noteheight>0pt% - \advance\@tempdima-1.35\baselineskip - \fi% - \global\setbox\els@boxa=\vsplit0 to \@tempdima - \box\els@boxa\par\resetTitleCounters - \thispagestyle{pprintTitle}% - \printFirstPageNotes - \ifnum\savetitlepagespan>1\relax% - \myfor{2}{\savetitlepagespan}{% - \global\setbox\els@boxb=\vsplit0 to \textheight%\@tempdima - \twocolumn[\box\els@boxb]} - \else% - \fi% - \twocolumn[\box0]% - \else - \twocolumn[\finalMaketitle]\printFirstPageNotes - \fi - \gdef\thefootnote{\arabic{footnote}}}% - \else - \def\maketitle{% - \elsarticleprelims% - \iflongmktitle\getSpaceLeft - \ifdim\noteheight>0pt% - \advance\@tempdima-1.35\baselineskip - \fi% - \global\setbox\els@boxa=\vsplit0 to \@tempdima - \box\els@boxa\par\resetTitleCounters - \thispagestyle{pprintTitle}% - \printFirstPageNotes - \ifnum\savetitlepagespan>1\relax% - \myfor{2}{\savetitlepagespan}{% - \global\setbox\els@boxb=\vsplit0 to \textheight%\@tempdima - \box\els@boxb} - \else% - \fi% - \box0% - \else - \elsarticleprelims% - \finalMaketitle\printFirstPageNotes - \fi - \gdef\thefootnote{\arabic{footnote}}}% - \fi - \fi - \fi -\fi - -\let\@elsarticlemyfooter\@empty -\let\@elsarticlemyfooteralign\@empty -\def\@elsarticlemyfooteralignleft{L} -\def\@elsarticlemyfooteralignright{R} -\def\@elsarticlemyfooteraligncenter{C} - -\def\myfooter[#1]#2 %*% - {\gdef\@elsarticlemyfooteralign{#1} - \gdef\@elsarticlemyfooter{#2}} - -\def\myfooterfont#1{\gdef\@myfooterfont{#1}} -\myfooterfont{\footnotesize\itshape} -\def\ps@pprintTitle{% - \let\@oddhead\@empty - \let\@evenhead\@empty - \def\@oddfoot - {\hbox to \textwidth% - {\ifnopreprintline\relax\else - \@myfooterfont% - \ifx\@elsarticlemyfooteralign\@elsarticlemyfooteraligncenter% - \hfil\@elsarticlemyfooter\hfil% - \else% - \ifx\@elsarticlemyfooteralign\@elsarticlemyfooteralignleft% - \@elsarticlemyfooter\hfill{}% - \else% - \ifx\@elsarticlemyfooteralign\@elsarticlemyfooteralignright% - {}\hfill\@elsarticlemyfooter% - \else% - % Preprint submitted to \ifx\@journal\@empty% - % Elsevier% - \ifx\@journal\@empty\else - Preprint submitted to - \@journal\hfill\@date\fi\fi% - \fi% - \fi% - \fi% - } - }% - \let\@evenfoot\@oddfoot} -\def\@seccntDot{.} -\def\@seccntformat#1{\csname the#1\endcsname\@seccntDot\hskip 0.5em} - -\renewcommand\section{\@startsection {section}{1}{\z@}% - {18\p@ \@plus 6\p@ \@minus 3\p@}% - {9\p@ \@plus 6\p@ \@minus 3\p@}% - {\normalsize\bfseries\boldmath}} -\renewcommand\subsection{\@startsection{subsection}{2}{\z@}% - {12\p@ \@plus 6\p@ \@minus 3\p@}% - {3\p@ \@plus 6\p@ \@minus 3\p@}% - {\normalfont\normalsize\itshape}} -\renewcommand\subsubsection{\@startsection{subsubsection}{3}{\z@}% - {12\p@ \@plus 6\p@ \@minus 3\p@}% - {\p@}% - {\normalfont\normalsize\itshape}} - -\def\paragraph{\secdef{\els@aparagraph}{\els@bparagraph}} -\def\els@aparagraph[#1]#2{\elsparagraph[#1]{#2.}} -\def\els@bparagraph#1{\elsparagraph*{#1.}} - -\newcommand\elsparagraph{\@startsection{paragraph}{4}{0\z@}% - {10\p@ \@plus 6\p@ \@minus 3\p@}% - {-6\p@}% - {\normalfont\itshape}} -\newdimen\leftMargin -\leftMargin=2em -\newtoks\@enLab %\newtoks\@enfont -\def\@enQmark{?} -\def\@enLabel#1#2{% - \edef\@enThe{\noexpand#1{\@enumctr}}% - \@enLab\expandafter{\the\@enLab\csname the\@enumctr\endcsname}% - \@enloop} -\def\@enSpace{\afterassignment\@enSp@ce\let\@tempa= } -\def\@enSp@ce{\@enLab\expandafter{\the\@enLab\space}\@enloop} -\def\@enGroup#1{\@enLab\expandafter{\the\@enLab{#1}}\@enloop} -\def\@enOther#1{\@enLab\expandafter{\the\@enLab#1}\@enloop} -\def\@enloop{\futurelet\@entemp\@enloop@} -\def\@enloop@{% - \ifx A\@entemp \def\@tempa{\@enLabel\Alph }\else - \ifx a\@entemp \def\@tempa{\@enLabel\alph }\else - \ifx i\@entemp \def\@tempa{\@enLabel\roman }\else - \ifx I\@entemp \def\@tempa{\@enLabel\Roman }\else - \ifx 1\@entemp \def\@tempa{\@enLabel\arabic}\else - \ifx \@sptoken\@entemp \let\@tempa\@enSpace \else - \ifx \bgroup\@entemp \let\@tempa\@enGroup \else - \ifx \@enum@\@entemp \let\@tempa\@gobble \else - \let\@tempa\@enOther - \fi\fi\fi\fi\fi\fi\fi\fi - \@tempa} -\newlength{\@sep} \newlength{\@@sep} -\setlength{\@sep}{.5\baselineskip plus.2\baselineskip - minus.2\baselineskip} -\setlength{\@@sep}{.1\baselineskip plus.01\baselineskip - minus.05\baselineskip} -\providecommand{\sfbc}{\rmfamily\upshape} -\providecommand{\sfn}{\rmfamily\upshape} -\def\@enfont{\ifnum \@enumdepth >1\let\@nxt\sfn \else\let\@nxt\sfbc \fi\@nxt} -\def\enumerate{% - \ifnum \@enumdepth >3 \@toodeep\else - \advance\@enumdepth \@ne - \edef\@enumctr{enum\romannumeral\the\@enumdepth}\fi - \@ifnextchar[{\@@enum@}{\@enum@}} -\def\@@enum@[#1]{% - \@enLab{}\let\@enThe\@enQmark - \@enloop#1\@enum@ - \ifx\@enThe\@enQmark\@warning{The counter will not be printed.% - ^^J\space\@spaces\@spaces\@spaces The label is: \the\@enLab}\fi - \expandafter\edef\csname label\@enumctr\endcsname{\the\@enLab}% - \expandafter\let\csname the\@enumctr\endcsname\@enThe - \csname c@\@enumctr\endcsname7 - \expandafter\settowidth - \csname leftmargin\romannumeral\@enumdepth\endcsname - {\the\@enLab\hskip\labelsep}% - \@enum@} -\def\@enum@{\list{{\@enfont\csname label\@enumctr\endcsname}}% - {\usecounter{\@enumctr}\def\makelabel##1{\hss\llap{##1}}% - \ifnum \@enumdepth>1\setlength{\topsep}{\@@sep}\else - \setlength{\topsep}{\@sep}\fi - \ifnum \@enumdepth>1\setlength{\itemsep}{0pt plus1pt minus1pt}% - \else \setlength{\itemsep}{\@@sep}\fi - %\setlength\leftmargin{\leftMargin}%%%{1.8em} - \setlength{\parsep}{0pt plus1pt minus1pt}% - \setlength{\parskip}{0pt plus1pt minus1pt} - }} - -\def\endenumerate{\par\ifnum \@enumdepth >1\addvspace{\@@sep}\else - \addvspace{\@sep}\fi \endlist} - -\def\sitem{\@noitemargtrue\@item[\@itemlabel *]} - -\def\itemize{\@ifnextchar[{\@Itemize}{\@Itemize[]}} - -\def\@Itemize[#1]{\def\next{#1}% - \ifnum \@itemdepth >\thr@@\@toodeep\else - \advance\@itemdepth\@ne - \ifx\next\@empty\else\expandafter\def\csname - labelitem\romannumeral\the\@itemdepth\endcsname{#1}\fi% - \edef\@itemitem{labelitem\romannumeral\the\@itemdepth}% - \expandafter\list\csname\@itemitem\endcsname - {\def\makelabel##1{\hss\llap{##1}}}% - \fi} -\def\newdefinition#1{% - \@ifnextchar[{\@odfn{#1}}{\@ndfn{#1}}}%] -\def\@ndfn#1#2{% - \@ifnextchar[{\@xndfn{#1}{#2}}{\@yndfn{#1}{#2}}} -\def\@xndfn#1#2[#3]{% - \expandafter\@ifdefinable\csname #1\endcsname - {\@definecounter{#1}\@newctr{#1}[#3]% - \expandafter\xdef\csname the#1\endcsname{% - \expandafter\noexpand\csname the#3\endcsname \@dfncountersep - \@dfncounter{#1}}% - \global\@namedef{#1}{\@dfn{#1}{#2}}% - \global\@namedef{end#1}{\@enddefinition}}} -\def\@yndfn#1#2{% - \expandafter\@ifdefinable\csname #1\endcsname - {\@definecounter{#1}% - \expandafter\xdef\csname the#1\endcsname{\@dfncounter{#1}}% - \global\@namedef{#1}{\@dfn{#1}{#2}}% - \global\@namedef{end#1}{\@enddefinition}}} -\def\@odfn#1[#2]#3{% - \@ifundefined{c@#2}{\@nocounterr{#2}}% - {\expandafter\@ifdefinable\csname #1\endcsname - {\global\@namedef{the#1}{\@nameuse{the#2}} - \global\@namedef{#1}{\@dfn{#2}{#3}}% - \global\@namedef{end#1}{\@enddefinition}}}} -\def\@dfn#1#2{% - \refstepcounter{#1}% - \@ifnextchar[{\@ydfn{#1}{#2}}{\@xdfn{#1}{#2}}} -\def\@xdfn#1#2{% - \@begindefinition{#2}{\csname the#1\endcsname}\ignorespaces} -\def\@ydfn#1#2[#3]{% - \@opargbegindefinition{#2}{\csname the#1\endcsname}{#3}\ignorespaces} -\def\@dfncounter#1{\noexpand\arabic{#1}} -\def\@dfncountersep{.} -\def\@begindefinition#1#2{\trivlist - \item[\hskip\labelsep{\bfseries #1\ #2.}]\upshape} -\def\@opargbegindefinition#1#2#3{\trivlist - \item[\hskip\labelsep{\bfseries #1\ #2\ (#3).}]\upshape} -\def\@enddefinition{\endtrivlist} - -\def\@begintheorem#1#2{\trivlist - \let\baselinestretch\@blstr - \item[\hskip \labelsep{\bfseries #1\ #2.}]\itshape} -\def\@opargbegintheorem#1#2#3{\trivlist - \let\baselinestretch\@blstr - \item[\hskip \labelsep{\bfseries #1\ #2\ (#3).}]\itshape} - -\def\newproof#1{% - \@ifnextchar[{\@oprf{#1}}{\@nprf{#1}}} -\def\@nprf#1#2{% - \@ifnextchar[{\@xnprf{#1}{#2}}{\@ynprf{#1}{#2}}} -\def\@xnprf#1#2[#3]{% - \expandafter\@ifdefinable\csname #1\endcsname - {\@definecounter{#1}\@newctr{#1}[#3]% - \expandafter\xdef\csname the#1\endcsname{% - \expandafter\noexpand\csname the#3\endcsname \@prfcountersep - \@prfcounter{#1}}% - \global\@namedef{#1}{\@prf{#1}{#2}}% - \global\@namedef{end#1}{\@endproof}}} -\def\@ynprf#1#2{% - \expandafter\@ifdefinable\csname #1\endcsname - {\@definecounter{#1}% - \expandafter\xdef\csname the#1\endcsname{\@prfcounter{#1}}% - \global\@namedef{#1}{\@prf{#1}{#2}}% - \global\@namedef{end#1}{\@endproof}}} -\def\@oprf#1[#2]#3{% - \@ifundefined{c@#2}{\@nocounterr{#2}}% - {\expandafter\@ifdefinable\csname #1\endcsname - {\global\@namedef{the#1}{\@nameuse{the#2}}% - \global\@namedef{#1}{\@prf{#2}{#3}}% - \global\@namedef{end#1}{\@endproof}}}} -\def\@prf#1#2{% - \refstepcounter{#1}% - \@ifnextchar[{\@yprf{#1}{#2}}{\@xprf{#1}{#2}}} -\def\@xprf#1#2{% - \@beginproof{#2}{\csname the#1\endcsname}\ignorespaces} -\def\@yprf#1#2[#3]{% - \@opargbeginproof{#2}{\csname the#1\endcsname}{#3}\ignorespaces} -\def\@prfcounter#1{\noexpand\arabic{#1}} -\def\@prfcountersep{.} -\def\@beginproof#1#2{\trivlist\let\baselinestretch\@blstr - \item[\hskip \labelsep{\scshape #1.}]\rmfamily} -\def\@opargbeginproof#1#2#3{\trivlist\let\baselinestretch\@blstr - \item[\hskip \labelsep{\scshape #1\ (#3).}]\rmfamily} -\def\@endproof{\endtrivlist} -\newcommand*{\qed}{\hbox{}\hfill$\Box$} - -\@ifundefined{@biboptions}{\xdef\@biboptions{numbers}}{} -\InputIfFileExists{\jobname.spl}{}{} -\ifnonatbib\relax\else - \RequirePackage[\@biboptions]{natbib} -\fi -\newwrite\splwrite -\immediate\openout\splwrite=\jobname.spl -\def\biboptions#1{\def\next{#1}\immediate\write\splwrite{% - \string\g@addto@macro\string\@biboptions{% - ,\expandafter\strip@prefix\meaning\next}}} - -\let\baselinestretch=\@blstr -\ifnum\jtype=1 - \RequirePackage{geometry} - \geometry{twoside, - paperwidth=210mm, - paperheight=297mm, - textheight=562pt, - textwidth=384pt, - centering, - headheight=50pt, - headsep=12pt, - footskip=12pt, - footnotesep=24pt plus 2pt minus 12pt, - } - \global\let\bibfont=\footnotesize - \global\bibsep=0pt - \if@twocolumn\global\@twocolumnfalse\fi -\else\ifnum\jtype=3 - \RequirePackage{geometry} - \geometry{twoside, - paperwidth=210mm, - paperheight=297mm, - textheight=622pt, - textwidth=468pt, - centering, - headheight=50pt, - headsep=12pt, - footskip=18pt, - footnotesep=24pt plus 2pt minus 12pt, - columnsep=2pc - } - \global\let\bibfont=\footnotesize - \global\bibsep=0pt - \if@twocolumn\input{fleqn.clo}\fi -\else\ifnum\jtype=5 - \RequirePackage{geometry} - \geometry{twoside, - paperwidth=210mm, - paperheight=297mm, - textheight=682pt, - textwidth=522pt, - centering, - headheight=50pt, - headsep=12pt, - footskip=18pt, - footnotesep=24pt plus 2pt minus 12pt, - columnsep=18pt - }% - \global\let\bibfont=\footnotesize - \global\bibsep=0pt - \input{fleqn.clo} - \global\@twocolumntrue -%% -%% End of option '5p' -%% -\fi\fi\fi -\def\journal#1{\gdef\@journal{#1}} - \let\@journal\@empty -\newenvironment{frontmatter}{}{\maketitle} - -\long\def\@makecaption#1#2{% - \vskip\abovecaptionskip\footnotesize - \sbox\@tempboxa{#1: #2}% - \ifdim \wd\@tempboxa >\hsize - #1: #2\par - \else - \global \@minipagefalse - \hb@xt@\hsize{\hfil\box\@tempboxa\hfil}% - \fi - \vskip\belowcaptionskip} - -\AtBeginDocument{\@ifpackageloaded{hyperref} - {\def\@linkcolor{blue} - \def\@anchorcolor{blue} - \def\@citecolor{blue} - \def\@filecolor{blue} - \def\@urlcolor{blue} - \def\@menucolor{blue} - \def\@pagecolor{blue} -\begingroup - \@makeother\`% - \@makeother\=% - \edef\x{% - \edef\noexpand\x{% - \endgroup - \noexpand\toks@{% - \catcode 96=\noexpand\the\catcode`\noexpand\`\relax - \catcode 61=\noexpand\the\catcode`\noexpand\=\relax - }% - }% - \noexpand\x - }% -\x -\@makeother\` -\@makeother\= -}{}} -%% -\def\appendixname{Appendix } -\renewcommand\appendix{\par - \setcounter{section}{0}% - \setcounter{subsection}{0}% - \setcounter{equation}{0} - \gdef\thefigure{\@Alph\c@section.\arabic{figure}}% - \gdef\thetable{\@Alph\c@section.\arabic{table}}% - \gdef\thesection{\appendixname~\@Alph\c@section}% - \@addtoreset{equation}{section}% - \gdef\theequation{\@Alph\c@section.\arabic{equation}}% - \addtocontents{toc}{\string\let\string\numberline\string\tmptocnumberline}{}{} -} - -%%%% \numberline width calculation for appendix. -\newdimen\appnamewidth -\def\tmptocnumberline#1{% - \setbox0=\hbox{\appendixname} - \appnamewidth=\wd0 - \addtolength\appnamewidth{2.5pc} - \hb@xt@\appnamewidth{#1\hfill} -} - -%% Added for work with amsrefs.sty - -\@ifpackageloaded{amsrefs}% - {} - {%\let\bibsection\relax% - \AtBeginDocument{\def\cites@b#1#2,#3{% - \begingroup[% - \toks@{\InnerCite{#2}#1}% - \ifx\@empty#3\@xp\@gobble\fi - \cites@c#3% -}}} -%% -%% Added for avoiding clash with cleveref.sty -\@ifpackageloaded{cleveref}% - {} - {\def\tnotetext[#1]#2{\g@addto@macro\@tnotes{% - \refstepcounter{tnote}% - \immediate\write\@auxout{\string\Newlabel{#1}{\thetnote}} - \def\thefootnote{\ifcase\c@tnote\or$\star$\or$\star\star$\fi}% - \footnotetext{#2}}} -%%% - \def\fntext[#1]#2{\g@addto@macro\@fnotes{% - \refstepcounter{fnote}% - \immediate\write\@auxout{\string\Newlabel{#1}{\thefnote}} - \def\thefootnote{\thefnote}% - \global\setcounter{footnote}{\c@fnote}% - \footnotetext{#2}}} -%%% - \def\cortext[#1]#2{\g@addto@macro\@cornotes{% - \refstepcounter{cnote}% - \immediate\write\@auxout{\string\Newlabel{#1}{\thecnote}} - \def\thefootnote{\ifcase\c@cnote\or$\ast$\or - $\ast\ast$\fi}% - \footnotetext{#2}}} -} - -\def\textmarker#1#2{\textcolor{#1}{#2}}%*% -\endinput -%% -%% End of file `elsarticle.cls'. diff --git a/MS/img/TheGreatWaveoffKanagawa.jpeg b/MS/img/TheGreatWaveoffKanagawa.jpeg new file mode 100755 index 0000000..a6d11c0 Binary files /dev/null and b/MS/img/TheGreatWaveoffKanagawa.jpeg differ diff --git a/MS/img/corner-bg.png b/MS/img/corner-bg.png new file mode 100755 index 0000000..02e4127 Binary files /dev/null and b/MS/img/corner-bg.png differ diff --git a/MS/img/example.png b/MS/img/example.png new file mode 100644 index 0000000..c120633 Binary files /dev/null and b/MS/img/example.png differ diff --git a/MS/img/logo.png b/MS/img/logo.png new file mode 100755 index 0000000..bc5e6a6 Binary files /dev/null and b/MS/img/logo.png differ diff --git a/MS/img/nmfs-opensci-logo.png b/MS/img/nmfs-opensci-logo.png new file mode 100755 index 0000000..8014cbf Binary files /dev/null and b/MS/img/nmfs-opensci-logo.png differ diff --git a/MS/img/otter-bar.jpeg b/MS/img/otter-bar.jpeg new file mode 100644 index 0000000..ceb5daf Binary files /dev/null and b/MS/img/otter-bar.jpeg differ diff --git a/MS/img/ringed-seal.png b/MS/img/ringed-seal.png new file mode 100755 index 0000000..0f604cf Binary files /dev/null and b/MS/img/ringed-seal.png differ diff --git a/MS/index.qmd b/MS/index.qmd index a763704..5429510 100644 --- a/MS/index.qmd +++ b/MS/index.qmd @@ -1,6 +1,6 @@ --- subtitle: Graphical abstract -format: html +format: dwhm-html --- ```{r} diff --git a/RP/.gitignore b/RP/.gitignore new file mode 100644 index 0000000..075b254 --- /dev/null +++ b/RP/.gitignore @@ -0,0 +1 @@ +/.quarto/ diff --git a/RP/20231231_XX项目报告/.gitignore b/RP/20231231_XX项目报告/.gitignore new file mode 100644 index 0000000..075b254 --- /dev/null +++ b/RP/20231231_XX项目报告/.gitignore @@ -0,0 +1 @@ +/.quarto/ diff --git a/RP/20231231_XX项目报告/index.html.md b/RP/20231231_XX项目报告/index.html.md deleted file mode 100644 index 25201a7..0000000 --- a/RP/20231231_XX项目报告/index.html.md +++ /dev/null @@ -1,72 +0,0 @@ ---- -author: "中国科学院生态环境研究中心" -lang: zh -date: today -csl: _extensions/inst/tex/china-national-standard-gb-t-7714-2015-numeric.csl -format: - html: - theme: cosmo - keep-md: true - css: _extensions/inst/css/style.css - code-link: true - epub: default - pdf: - pdf-engine: xelatex - keep-tex: false - toc-title: 目录 - classoption: - - 12pt - - lang=cn - - chinesefont=founder # founder|ctexfont|nofont - - scheme=chinese - - color=blue # blue|green| - - titlestyle=hang - # - twoside - header-includes: - - \usepackage{ctex} - - \linespread{1.5} - docx: - toc: false - highlight-style: github - reference-doc: _extensions/inst/word/repcn.docx ---- - - - - - - -::: {.content-visible when-format="html"} -# Color tip {.unnumbered} - -- [Something should be deleted]{.del} -- [Something bad]{.bad} -- [Something good]{.good} -- [Something todo]{.todo} -- [Something should be added]{.add} -- [I am a comment]{.com} -::: - - - - - - - - - - - - -# 摘要 - -# 项目背景与国内外现状介绍 - -# 主要进展1 - -# 主要进展2 - -# 结论与下一步计划 - - -# 参考文献{-} diff --git a/RP/20231231_XX项目报告/index.qmd b/RP/20231231_XX项目报告/index.qmd index 3a96c8f..622f362 100644 --- a/RP/20231231_XX项目报告/index.qmd +++ b/RP/20231231_XX项目报告/index.qmd @@ -1,34 +1,66 @@ --- -author: "中国科学院生态环境研究中心" -lang: zh date: today -csl: _extensions/inst/tex/china-national-standard-gb-t-7714-2015-numeric.csl +author: "中国科学院生态环境研究中心" +csl: _extensions/drwater/dwinst/china-national-standard-gb-t-7714-2015-numeric.csl +isbook: true +top-level-division: chapter +classoption: + - fntef + - UTF8 + - zihao=-4 # 正文字号小四 + - lang=cn + # - chinesefont=founder # founder|ctexfont|nofont + - scheme=chinese + - color=blue # blue|green| + - titlestyle=hang +# classoption: [oneside] +titlepage: true +keep-tex: false +titlepage-rule-color: "360049" +titlepage-text-color: "360049" +titlepage-rule-height: 0 +titlepage-background: "_extensions/drwater/dwev/inst/cover1.pdf" +titlepage-halign: "center" # flushleft | flushright +title-vskip: -30em +title-size: "Huge" +author-vskip: -4em +date-vskip: -1em +caption-justification: centering +numbersections: true +parindent: true +# titlepage-logo: "inst/rceeslogo.pdf" +# logo-width: 20mm +# logo-vskip: -8em +# logo-hskip: "-6em" +lang: zh-CN # 不能改为cn，否则目录等不是中文 +CJK: true +fig-pos: "!t" +colorlinks: true +urlcolor: blue +header-left: "\\leftmark" +header-center: "\\hspace{1cm}" +header-right: "第\\thepage 页" +footer-left: "\\hspace{1cm}" # \\thetitle +footer-center: "\\includegraphics[height=1.5em]{_extensions/drwater/dwev/inst/drwater-gray1.pdf}" +footer-right: "\\hspace{1cm}" +toc: true +toc-own-page: true +fig-toc: true +CJKmainfont: "Noto Serif CJK SC" +CJKmainboldfont: "NotoSerifCJKsc-Bold" +CJKmainitalicfont: "NotoSansCJKsc-Light" +CJKsansfont: "Noto Sans CJK SC" +CJKmonofont: "Noto Sans Mono CJK SC" +CJKoptions: | + AutoFakeBold=true +# include-in-header: header.tex +# watermark: "drwater" +# watermark-color: "gray!3" format: - html: - theme: cosmo - keep-md: true - css: _extensions/inst/css/style.css - code-link: true - epub: default - pdf: - pdf-engine: xelatex - keep-tex: false - toc-title: 目录 - classoption: - - 12pt - - lang=cn - - chinesefont=founder # founder|ctexfont|nofont - - scheme=chinese - - color=blue # blue|green| - - titlestyle=hang - # - twoside - header-includes: - - \usepackage{ctex} - - \linespread{1.5} - docx: - toc: false - highlight-style: github - reference-doc: _extensions/inst/word/repcn.docx + dwhm-html: default + dwms-docx: default + # epub: default + dwev-pdf: default --- ::: {.content-visible when-format="html"} @@ -48,19 +80,13 @@ format: #| include: false #| cache: false lang <- "cn" -RM <- "F" # global rendermode, L: load pdata; F: fast load pdf +RM <- "F" # global rendermode, L: load pdata; F: fast load pdf isRendering <- !isTRUE(getOption('knitr.in.progress')) require(lubridate) require(tidyverse) require(patchwork) require(drwateR) -require(rmdify) rmdify::rmd_init() -require(langeR) -require(dateR) -require(uniteR) -require(limvis) -require(sf) ``` # 摘要 diff --git a/RP/index.qmd b/RP/index.qmd index 8ad2329..b92c98c 100644 --- a/RP/index.qmd +++ b/RP/index.qmd @@ -1,6 +1,7 @@ --- subtitle: "研究报告" lang: "zh" +format: dwhm-html --- ```{r} @@ -13,13 +14,40 @@ rmdify::rmd_init() ```{r} #| output: asis - data.frame(fd = dir(".", pattern = "[-_]")) |> - dplyr::mutate(fn = purrr::map_chr(fd, ~ file.path(.x, dir(.x, - pattern = "index.qmd|index.doc|index.pdf|index.ppt")))) |> - dplyr::transmute(htmlstr = purrr::map_chr(fn, ~ paste0("## [", .x, "](", .x, ")\n\n"))) |> + dplyr::filter(!grepl("_files", fd)) |> + dplyr::filter(!grepl("quarto", fd)) |> + dplyr::mutate( + fn = purrr::map_chr( + fd, + ~ file.path(.x, dir(.x, pattern = "index.qmd|index.html"))[1] + ) + ) |> + dplyr::transmute( + htmlstr = purrr::map2_chr( + fn, + fd, + ~ paste0( + "## [", + .y, + "](", + .x, + ")\n\n", + ifelse( + !grepl("qmd$", .x), + "", + paste0( + "\n\n" + ) + ) + ) + ) + ) |> dplyr::pull(htmlstr) |> paste(collapse = "") |> cat() - ``` diff --git a/SD/20230101_文章讨论/_extensions b/SD/20230101_文章讨论/_extensions new file mode 120000 index 0000000..74119e3 --- /dev/null +++ b/SD/20230101_文章讨论/_extensions @@ -0,0 +1 @@ +../../_extensions \ No newline at end of file diff --git a/SD/20230101_文章讨论/index.qmd b/SD/20230101_文章讨论/index.qmd index 7ab6171..b3a23c5 100644 --- a/SD/20230101_文章讨论/index.qmd +++ b/SD/20230101_文章讨论/index.qmd @@ -1,5 +1,6 @@ --- title: "文章讨论" -format: revealjs +author: "AUTHOR" +format: dwsd-revealjs --- diff --git a/SD/20230101_文章讨论/rceeslogo.pdf b/SD/20230101_文章讨论/rceeslogo.pdf new file mode 100644 index 0000000..51d1a45 Binary files /dev/null and b/SD/20230101_文章讨论/rceeslogo.pdf differ diff --git a/SD/index.qmd b/SD/index.qmd index 05f3520..677accb 100644 --- a/SD/index.qmd +++ b/SD/index.qmd @@ -12,15 +12,38 @@ rmdify::rmd_init() ```{r} #| output: asis data.frame(fd = dir(".", pattern = "[-_]")) |> - dplyr::mutate(fn = purrr::map_chr(fd, ~ file.path(.x, dir(.x, - pattern = "index.qmd|index.doc|index.pdf|index.ppt")))) |> - dplyr::transmute(htmlstr = purrr::map_chr(fn, ~ paste0("## [", .x, "](", .x, ")\n\n", - ifelse(!grepl("qmd$", .x), "", - paste0("\n\n"))))) |> + dplyr::mutate( + fn = purrr::map_chr( + fd, + ~ file.path( + .x, + dir(.x, pattern = "index.qmd|index.doc|index.pdf|index.ppt") + ) + ) + ) |> + dplyr::transmute( + htmlstr = purrr::map_chr( + fn, + ~ paste0( + "## [", + .x, + "](", + .x, + ")\n\n", + ifelse( + !grepl("qmd$", .x), + "", + paste0( + "\n\n" + ) + ) + ) + ) + ) |> dplyr::pull(htmlstr) |> paste(collapse = "") |> cat() diff --git a/_extensions/drwater b/_extensions/drwater new file mode 160000 index 0000000..9e35fe0 --- /dev/null +++ b/_extensions/drwater @@ -0,0 +1 @@ +Subproject commit 9e35fe0b8954b2970011f7fe88d5a05d47014d6d diff --git a/_extensions/inst/css/style.css b/_extensions/inst/css/style.css deleted file mode 100755 index 0bbdcff..0000000 --- a/_extensions/inst/css/style.css +++ /dev/null @@ -1,109 +0,0 @@ -.udot { - text-decoration-line: underline; - text-decoration-color: rgb(50, 50, 50); - text-decoration-style: dashed; - text-decoration-thickness: 1px; -} - -.good { - background-color: forestgreen; - color: lightyellow; -} - -.bad { - background-color: orangered; - color: lightyellow; -} - -.del { - text-decoration-line: line-through; - text-decoration-color: rgb(222 13 13); - text-decoration-style: initial; - text-decoration-thickness: 1.5px; -} - - -.todo { - background-color: darkorange; - color: lightyellow; -} - -.com { - background-color: #0025ff; - font-weight: bold; - color: lightyellow; -} - -.add { - text-decoration-line: underline; - text-decoration-color: rgb(222 13 13); - background-color: violet; - text-decoration-style: initial; - text-decoration-thickness: 2px; -} - - -del { - text-decoration-line: line-through; - text-decoration-color: rgb(222 13 13); - text-decoration-style: initial; - text-decoration-thickness: 1.0px; -} - - -ins { - text-decoration-color: rgb(222 93 93); - background-color: violet; - text-decoration-style: initial; - text-decoration-thickness: 2px; -} - -.clab { - background-color: rgb(255, 245, 240); -} - -.rem { - background-color: darkorange; - color: lightyellow; - text-decoration-thickness: 2px; -} - - -#criticnav { - position: fixed; - z-index: 1100; - top: 0; - right: 0; - width: 120px; - border-bottom: solid 1px #ffffff; - margin: 0; - padding: 10; - background-color: rgb(143 38 38 / 95%); - color: #ffffff; - font-size: 12px; - font-family: "Helvetica Neue", helvetica, arial, sans-serif !important -} - -#criticnav ul { - list-style-type: none; - width: 90%; - margin: 0 auto; - padding: 0 -} - -#criticnav ul li { - display: block; - width: 100px; - min-width: 80px; - text-align: center; - padding: 5px 0 3px !important; - margin: 5px 2px !important; - line-height: 1em; - float: center; - text-transform: uppercase; - cursor: pointer; - border-radius: 20px; - border: 3px solid rgba(255,255,255,0); - color: #fff !important -} - diff --git a/_extensions/inst/img/rceeslogo.png b/_extensions/inst/img/rceeslogo.png deleted file mode 100755 index f8cf1d5..0000000 Binary files a/_extensions/inst/img/rceeslogo.png and /dev/null differ diff --git a/_extensions/inst/img/rceeslonglogo.png b/_extensions/inst/img/rceeslonglogo.png deleted file mode 100755 index 5460fde..0000000 Binary files a/_extensions/inst/img/rceeslonglogo.png and /dev/null differ diff --git a/_extensions/inst/img/signms.png b/_extensions/inst/img/signms.png deleted file mode 100755 index ed103bc..0000000 Binary files a/_extensions/inst/img/signms.png and /dev/null differ diff --git a/_extensions/inst/img/signmy.png b/_extensions/inst/img/signmy.png deleted file mode 100755 index 1d57677..0000000 Binary files a/_extensions/inst/img/signmy.png and /dev/null differ diff --git a/_extensions/inst/tex/american-chemical-society.csl b/_extensions/inst/tex/american-chemical-society.csl deleted file mode 100755 index 01f8c49..0000000 --- a/_extensions/inst/tex/american-chemical-society.csl +++ /dev/null @@ -1,280 +0,0 @@ - - diff --git a/_extensions/inst/tex/china-national-standard-gb-t-7714-2015-numeric.csl b/_extensions/inst/tex/china-national-standard-gb-t-7714-2015-numeric.csl deleted file mode 100755 index f7c84f0..0000000 --- a/_extensions/inst/tex/china-national-standard-gb-t-7714-2015-numeric.csl +++ /dev/null @@ -1,435 +0,0 @@ - - diff --git a/_extensions/inst/tex/cv.tex b/_extensions/inst/tex/cv.tex deleted file mode 100755 index d35a19a..0000000 --- a/_extensions/inst/tex/cv.tex +++ /dev/null @@ -1,240 +0,0 @@ -%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%% -% Academic Letter LaTeX and RMarkdown Structure % -% Author: Pedro Henrique Pereira Braga % -% % -% License: % -% CC BY-NC-SA 3.0 (http://creativecommons.org/licenses/by-nc-sa/3.0/) % -% % -%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%% - -% Set the font size (11pt, for now) and paper size (e.g. letterpaper, a4paper) -\documentclass[11pt, letterpaper]{letter} - -%---------------------------------------------------------------------- -% PACKAGES AND OTHER DOCUMENT CONFIGURATIONS -%---------------------------------------------------------------------- - -\usepackage{graphicx} % Required for including pictures -\usepackage{fancyhdr} % Allows the use of fancy headers and footers - -\usepackage{microtype} % For typography improvement - -\usepackage{url} % Allows the use of hyperlinks -\urlstyle{same} % Allows hyperlink fonts to be the same as the mainfont -\usepackage[hidelinks]{hyperref} % Allows the use of hyperlinks and -% removes the blue boxes around the link - -\pagestyle{empty} % Removes headers and footers - -\usepackage{setspace} % Allows the use of double spacing in the letter body - -\setlength\parindent{1cm} % Paragraph indentation - -% Create a new command for the horizontal rule in the document which allows -% thickness specification -\makeatletter - \def\@texttop{} % force the address to start above -\renewcommand*{\opening}[1]{\ifx\@empty\fromaddress - \thispagestyle{firstpage}% - {\raggedleft\@date\par}% - \else % home address - \thispagestyle{empty}% - {\raggedleft\begin{tabular}{l@{}}\ignorespaces - \fromaddress \\*[2\parskip]% - \@date \end{tabular}\par}% - \fi - %\vspace{2\parskip}% <-- Removed - %{\raggedright \toname \\ \toaddress \par}% <-- Removed - %\vspace{2\parskip}% <-- Removed - #1\par\nobreak} -\let\ps@empty\ps@plain -\let\ps@firstpage\ps@plain -\makeatother - -%-------------------------------------------------------------------------- -% FONTS -%-------------------------------------------------------------------------- - -\usepackage[T1]{fontenc} % Output font encoding for international characters -% \usepackage[utf8]{inputenc} % Required for inputting international characters -\usepackage[quiet]{fontspec} % Allows the use of fontspec -\setmainfont{Calibri} -% \usepackage{txfonts} % Allows the use of Lato fonts - - -%---------------------------------------------------------------------------- -% DOCUMENT MARGINS -%---------------------------------------------------------------------------- - -\usepackage{geometry} % Required for adjusting page dimensions - -\geometry{ - headheight = 0.7in, % Header height - top=1.5in, % Top margin - bottom=1.5cm, % Bottom margin - left=3cm, % Left margin - right=3cm, % Right margin - % showframe, % Uncomment to show how the type block is set on the page -} - -%----------------------------------------------------------------------------- -% AUTHOR AND RECIPIENTS NEW COMMANDS AND DETAILS STRUCTURE -%----------------------------------------------------------------------------- - -\newcommand{\authordetails}[1]{\renewcommand{\authordetails}{#1}} -\newcommand{\recipientdetails}[1]{\renewcommand{\recipientdetails}{#1}} - -%----------------------------------------------------------------------------- -% HEADER STRUCTURE -%----------------------------------------------------------------------------- - -\address{ - % Include the author's details on the right side of the page under the line - \raggedleft{ - \footnotesize{ % Use a smaller font size - $author$\\ % Author name - \authordetails\\ - \hspace{1mm} - } - } - \vspace{-0.05\textheight} % Move the date and letter content up -} - -%------------------------------------------------------------------------------ -% COMPOSE THE ENTIRE HEADER -%------------------------------------------------------------------------------ - -\renewcommand{\opening}[1]{ - {\fromaddress - \vspace{0.05\textheight}\\ % Print the sender's address here and add some whitespace to allow the printing of the date - \raggedleft{$date$} % Include the date, aligned to the right - \par % par - } - {\raggedright - \toname\\ - \toaddress - \par} % Print the recipient's name and adress - \vspace{0.25cm} % White vertical space after recipient's address - \noindent #1 % Following this, insert the opening info -} - -%------------------------------------------------------------------------------ -% SIGNATURE STRUCTURE -%------------------------------------------------------------------------------ -% The signature is a combination of the author's name, title and institution -\signature{$author$, on behalf of all authors\\ - Email: $from_email$} - -% I will later combine the option of inserting a signature within it - -\renewcommand{\closing}[1]{ - \vspace{2.5mm} % Some whitespace after the letter content and before the signature - \noindent % Stop paragraph indentation - % \hspace*{\longindentation} % Move the signature right to the value of \longindentation - \parbox{\indentedwidth}{ - \raggedright - #1 % Print the signature text - % \vskip 1.65cm % Whitespace between the closing text and author's name for a physical signature - \\\includegraphics[height=0.6in, keepaspectratio=true]{$from_sign$}\\ - \fromsig % Prints the value of \signature{}, i.e. author name and title - } -} - -%------------------------------------------------------------------------------- -% AUTHOR'S INFORMATION -%------------------------------------------------------------------------------- - -\authordetails{ - $from_position$\\ - $from_department$\\ % Sender's department/institution - $from_institution$\\ - $from_address$ % Sender's address - % $from_city$, $from_state_province$\\ % Sender's city, state or province, - % $from_postalcode$\\ % postal code - % $from_country$ -} - -%------------------------------------------------------------------------------ -% RECIPIENT'S INFORMATION -%------------------------------------------------------------------------------ - -\recipientdetails{ -$to_professional_title$ $to_name$\\ - $if(to_journal)$ -\textit{$to_journal$} -$endif$ -} - -%------------------------------------------------------------------------------ -% HEADER CONTENTS -%------------------------------------------------------------------------------ - -\fancypagestyle{firstpage}{ - \fancyhf{} - \fancyhead[L]{ - \includegraphics[height=0.6in, keepaspectratio=true]{$from_institution_logo$} - } - \fancyhead[R]{$author$\\ - \footnotesize{ - $from_email$\\ % Sender's email address - % $from_personal_website$ \\ % Sender's URL - $from_phone$ % Sender's phone number - } - } - } - -\fancypagestyle{plain}{ - \fancyhf{} - \fancyhead[L]{ - \includegraphics[height=0.6in, keepaspectratio=true]{$from_institution_logo$} - } - \fancyhead[R]{$author$\\ - \footnotesize{ - $from_email$\\ % Sender's email address - % $from_personal_website$ \\ % Sender's URL - $from_phone$ % Sender's phone number - } - } - } - -\fancypagestyle{empty}{ - \fancyhf{} - \fancyhead[L]{ - \includegraphics[height=0.6in, keepaspectratio=true]{$from_institution_logo$} - } - \fancyhead[R]{$author$\\ - \footnotesize{ - $from_email$\\ % Sender's email address - % $from_personal_website$ \\ % Sender's URL - $from_phone$ % Sender's phone number - } - } - } - -%------------------------------------------------------------------------------ -\pagestyle{plain} - -\begin{document} - -%------------------------------------------------------------------------------ -% TO ADDRESS -%------------------------------------------------------------------------------ - -\begin{letter}{\recipientdetails} - -%------------------------------------------------------------------------------ -% LETTER CONTENT -%------------------------------------------------------------------------------ - -\opening{$opening_greeting$} -% \begin{doublespacing} - -$body$ - -% \end{doublespacing} -\closing{$closing_greeting$} - -%------------------------------------------------------------------------------ - -\end{letter} -\end{document} diff --git a/_extensions/inst/tex/els.tex b/_extensions/inst/tex/els.tex deleted file mode 100755 index 197540d..0000000 --- a/_extensions/inst/tex/els.tex +++ /dev/null @@ -1,426 +0,0 @@ -$-- Keeping in template layout for backward compatibility -\documentclass[$if(layout)$$layout$$else$$for(classoption)$$classoption$$sep$,$endfor$$endif$]{elsarticle} %review=doublespace preprint=single 5p=2 column -%%% Begin My package additions %%%%%%%%%%%%%%%%%%% -\usepackage[hyphens]{url} -$if(journal)$ -\journal{$journal$} % Sets Journal name -$endif$ -\usepackage{lineno} % add -$if(linenumbers)$ -\linenumbers % turns line numbering on -$endif$ -\usepackage{graphicx} -\usepackage{xstring} -\usepackage[table]{xcolor} -%%%%%%%%%%%%%%%% end my additions to header -\usepackage[T1]{fontenc} -\usepackage{lmodern} -\usepackage{amssymb,amsmath} -\usepackage{ifxetex,ifluatex} -\usepackage{fixltx2e} % provides \textsubscript -% use upquote if available, for straight quotes in verbatim environments -\IfFileExists{upquote.sty}{\usepackage{upquote}}{} -\ifnum 0\ifxetex 1\fi\ifluatex 1\fi=0 % if pdftex - \usepackage[utf8]{inputenc} - $if(euro)$ - \usepackage{eurosym} - $endif$ -\else % if luatex or xelatex - \usepackage{fontspec} - \ifxetex - \usepackage{xltxtra,xunicode} - \fi - \defaultfontfeatures{Mapping=tex-text,Scale=MatchLowercase} - \newcommand{\euro}{€} - $if(mainfont)$ - \setmainfont{$mainfont$} - $endif$ - $if(sansfont)$ - \setsansfont{$sansfont$} - $endif$ - $if(monofont)$ - \setmonofont{$monofont$} - $endif$ - $if(mathfont)$ - \setmathfont{$mathfont$} - $endif$ -\fi -% use microtype if available -\IfFileExists{microtype.sty}{\usepackage{microtype}}{} -$if(geometry)$ -\usepackage[$for(geometry)$$geometry$$sep$,$endfor$]{geometry} -$endif$ -$if(natbib)$ -\usepackage{natbib} -\setcitestyle{$natbiboptions$} -\bibliographystyle{$if(biblio-style)$$biblio-style$$else$plainnat$endif$} -$endif$ -$if(listings)$ -\usepackage{listings} -$endif$ -$if(lhs)$ -\lstnewenvironment{code}{\lstset{language=Haskell,basicstyle=\small\ttfamily}}{} -$endif$ -$if(verbatim-in-note)$ -\usepackage{fancyvrb} -$endif$ -$if(graphics)$ -\usepackage{graphicx} -$endif$ -\ifxetex - \usepackage[setpagesize=false, % page size defined by xetex - unicode=false, % unicode breaks when used with xetex - xetex]{hyperref} -\else - \usepackage[unicode=true]{hyperref} -\fi -\hypersetup{breaklinks=true, - bookmarks=true, - pdfauthor={$author-meta$}, - pdftitle={$title-meta$}, - colorlinks=$if(colorlinks)$true$else$false$endif$, - urlcolor=$if(urlcolor)$$urlcolor$$else$blue$endif$, - linkcolor=$if(linkcolor)$$linkcolor$$else$magenta$endif$, - pdfborder={0 0 0}} -\urlstyle{same} % don't use monospace font for urls -$if(links-as-notes)$ -% Make links footnotes instead of hotlinks: -\renewcommand{\href}[2]{#2\footnote{\url{#1}}} -$endif$ -$if(strikeout)$ -\usepackage[normalem]{ulem} -% avoid problems with \sout in headers with hyperref: -\pdfstringdefDisableCommands{\renewcommand{\sout}{}} -$endif$ -$if(numbersections)$ -\setcounter{secnumdepth}{5} -$else$ -\setcounter{secnumdepth}{0} -$endif$ -$if(verbatim-in-note)$ -\VerbatimFootnotes % allows verbatim text in footnotes -$endif$ -$if(lang)$ -\ifxetex - \usepackage{polyglossia} - \setmainlanguage{$mainlang$} -\else - \usepackage[$lang$]{babel} -\fi -$endif$ -% Pandoc toggle for numbering sections (defaults to be off) -$if(numbersections)$ -$else$ -\setcounter{secnumdepth}{0} -$endif$ -$if(highlighting-macros)$ -% Pandoc syntax highlighting -$highlighting-macros$ -$endif$ -% tightlist command for lists without linebreak -\providecommand{\tightlist}{% - \setlength{\itemsep}{0pt}\setlength{\parskip}{0pt}} -$if(tables)$ -% From pandoc table feature -\usepackage{longtable,booktabs,array} -$if(multirow)$ -\usepackage{multirow} -$endif$ -\usepackage{calc} % for calculating minipage widths -% Correct order of tables after \paragraph or \subparagraph -\usepackage{etoolbox} -\makeatletter -\patchcmd\longtable{\par}{\if@noskipsec\mbox{}\fi\par}{}{} -\makeatother -% Allow footnotes in longtable head/foot -\IfFileExists{footnotehyper.sty}{\usepackage{footnotehyper}}{\usepackage{footnote}} -\makesavenoteenv{longtable} -$endif$ -$if(csl-refs)$ -% Pandoc citation processing -\newlength{\cslhangindent} -\setlength{\cslhangindent}{1.5em} -\newlength{\csllabelwidth} -\setlength{\csllabelwidth}{3em} -\newlength{\cslentryspacingunit} % times entry-spacing -\setlength{\cslentryspacingunit}{\parskip} -% for Pandoc 2.8 to 2.10.1 -\newenvironment{cslreferences}% - {$if(csl-hanging-indent)$\setlength{\parindent}{0pt}% - \everypar{\setlength{\hangindent}{\cslhangindent}}\ignorespaces$endif$}% - {\par} -% For Pandoc 2.11+ -\newenvironment{CSLReferences}[2] % #1 hanging-ident, #2 entry spacing -{% don't indent paragraphs - \setlength{\parindent}{0pt} - % turn on hanging indent if param 1 is 1 - \ifodd #1 - \let\oldpar\par - \def\par{\hangindent=\cslhangindent\oldpar} - \fi - % set entry spacing - \setlength{\parskip}{#2\cslentryspacingunit} - }% -{} -\usepackage{calc} -\newcommand{\CSLBlock}[1]{#1\hfill\break} -\newcommand{\CSLLeftMargin}[1]{\parbox[t]{\csllabelwidth}{#1}} -\newcommand{\CSLRightInline}[1]{\parbox[t]{\linewidth - \csllabelwidth}{#1}\break} -\newcommand{\CSLIndent}[1]{\hspace{\cslhangindent}#1} -$endif$ -$for(header-includes)$ -$header-includes$ -$endfor$ - -\usepackage{xifthen} -% set special color for EST -\ifthenelse{\equal{$journal$}{Environmental Science \& Technology}} -{\definecolor{seccol}{RGB}{56, 95, 66}} -{\definecolor{seccol}{RGB}{0, 0, 0}} - -$if(uppersections)$ -\usepackage{titlesec} -\titleformat{\section} -{\color{seccol}\large\bfseries\MakeUppercase}{\thesection}{1em}{} -$endif$ -$if(sectiononnewpage)$ -\AddToHook{cmd/section/before}{\clearpage} -$endif$ - -\usepackage{enumitem} -\usepackage{fontspec} -\usepackage{float} -\setmainfont{Helvetica} -\usepackage[normalem]{ulem} -\usepackage{hyperref} -\usepackage{nameref} %needed by zref-xr -\usepackage{zref-xr,zref-hyperref,zref-user} -\usepackage{xr-hyper} - -% force to use \zref -$if(msname)$ -\def\msname{$msname$} -\zexternaldocument*{\msname} -\renewcommand{\ref}{\zref} -$endif$ -$if(smname)$ -\def\smname{$smname$} -\zexternaldocument*{\smname} -$endif$ - -\zxrsetup{toltxlabel=true} -{\catcode`\#=12 \gdef\hashchar{#1}} -\makeatletter -\newcommand\hzref[1]{\edef\next{% - \noexpand\href{% - \zref@extractdefault{#1}{url}{}% - \zref@ifrefcontainsprop{#1}{anchor}{% - \hashchar\zref@extract{#1}{anchor}}{}}% - {\noexpand\zref{#1}}}\next} -\makeatother - - - -$if(revision)$ -% \usepackage{xcolor} -\usepackage{adjustbox} -\usepackage{mdframed} -\newmdenv[topline=false, - leftline=true, - bottomline=false, - rightline=false, - linewidth=3pt, - %backgroundcolor=lightgray, - linecolor=gray!30, - backgroundcolor=gray!5, - skipabove=\topsep, - skipbelow=\topsep, - leftmargin=0pt, - rightmargin=0pt, - innertopmargin=0pt, - innerbottommargin=0pt - ]{refquote} -\newmdenv[topline=false, - leftline=true, - bottomline=false, - rightline=false, - linewidth=3pt, - %backgroundcolor=lightgray, - backgroundcolor=red!3!white, - linecolor=red!30!white, - skipabove=\topsep, - skipbelow=\topsep, - leftmargin=0pt, - rightmargin=0pt, - innertopmargin=10pt, - innerbottommargin=10pt - ]{question} -\setenumerate{labelsep=*, leftmargin=1.0pc} -% setup hyperlink for page and line number -\def\msname{$if(msname)$$msname$$else$MS$endif$} -\def\smname{$if(smname)$$smname$$else$SM$endif$} -\setenumerate{labelsep=*, leftmargin=1.0pc} -%\zexternaldocument*{ManuscriptNew\veraa} -\zexternaldocument*{\msname} -\zexternaldocument*{\smname} -\newcommand{\hlabel}[1]{\label{#1}\hypertarget{#1}{ - \linelabel{line:#1}}} -%\externaldocument[si-]{\smname\veraa}[\smname\veraa.pdf] -\makeatletter - \newcommand{\clab}[2]{% - \protected@write\@auxout{\let\clab\@secondoftwo}{ - \string\newlabel{r:#1}{{#2}{}}}% - \hlabel{#1}#2\hlabel{#1end}} -\makeatother -\newcommand{\zhypera}[1]{\href[pdfnewwindow]{\msname.pdf\##1}{\\[1ex]\textbf{Page \zpageref{#1}, Line -\zref{line:#1}--\zref{line:#1end}:}\\}} -\newcommand{\cref}[1]{\begin{refquote}\zhypera{#1}{\zref{r:#1}}\\[-0.5ex]\end{refquote}} -% \newenvironment{ra}[1][\unskip]{\par \noindent \\[-1ex] \textbf{Response/Action:}\par\bf}{\ \\} -\renewenvironment{quote}{\begin{question}}{\end{question}} -% \renewenvironment{verbatim}{\begin{ra}}{\end{ra}} -$endif$ - -% def default corresponding authors and equal contributing authors variables -\def\hascorr{0} -\def\haseqc{0} -% check if corresponding author(s) and equal contributing authors are available -$for(author)$$if(author.correspondence)$\def\hascorr{1}$endif$$if(author.equal-contributor)$\def\haseqc{1}$endif$ $endfor$ - -\newcommand{\getcorrauthinfo}{ - \subsection{Corresponding Author(s)} - \def\a{} \def\b{} \def\c{} - \hspace{-2.2em} - $for(author)$ - $if(author.correspondence)$ - \textbf{$author.name$:} - \vspace{-1em} - \begin{enumerate}[labelindent=-12pt,label=\arabic*.,itemindent=0em,leftmargin=!, itemsep = -10pt] - $for(author.institute)$ \def\a{$author.institute$} - $for(institute)$ \def\b{$institute.id$} \def\c{$institute.name$} - \ifx \a\b \item \c; \fi - $endfor$ - $endfor$ - $if(author.email)$\item email: $author.email$;$endif$ - $if(author.orcid)$\item orcid: $author.orcid$;$endif$ - $if(author.tel)$\item Tel: $author.tel$;$endif$ - $if(author.fax)$\item Fax: $author.fax$$endif$ - \end{enumerate} - $endif$ - $endfor$ -} - -\newcommand{\getotherauthinfo}{ - \subsection{Author(s)} - \def\a{} \def\b{} \def\c{} - \hspace{-2.2em} - $for(author)$ - $if(author.correspondence)$ - $else$ - \textbf{$author.name$:} - \vspace{-1em} - \begin{enumerate}[labelindent=-12pt,label=\arabic*.,itemindent=0em,leftmargin=!, itemsep = -10pt] - $for(author.institute)$ \def\a{$author.institute$} $for(institute)$ \def\b{$institute.id$} \def\c{$institute.name$} - \ifx \a\b \item \c; \fi - $endfor$ - $endfor$ - $if(author.email)$\item email: $author.email$;$endif$ - $if(author.orcid)$\item orcid: $author.orcid$;$endif$ - $if(author.tel)$\item Tel: $author.tel$;$endif$ - $if(author.fax)$\item Fax: $author.fax$$endif$ - \end{enumerate} - $endif$ - $endfor$ -} - -$preamble$ - -% remove the two line around Abstract -$if(abstract)$ -$else$ -\makeatletter -\renewcommand{\MaketitleBox}{% - \resetTitleCounters - \def\baselinestretch{1}% - \begin{center} - \def\baselinestretch{1}% - \large \@title \par - \vskip 18pt - \normalsize\elsauthors \par - \vskip 30pt - \footnotesize \itshape \elsaddress \par - \end{center} - \vskip 12pt -} -\makeatother -$endif$ - -\begin{document} -$for(include-before)$ -$include-before$ -$endfor$ -\begin{frontmatter} - - \title{$title$$if(subtitle)$\\\Large{$subtitle$}$endif$} - $for(author)$\author$if(authorwithinstitute)$[$for(author.institute)$$author.institute$$sep$,$endfor$]$endif${$author.name$$if(author.correspondence)$\corref{corrauth}$endif$$if(author.equal-contributor)$\corref{eqcon}$endif$ $if(author.footnote)$\fnref{$author.footnote$}$endif$}$if(author.email)$\ead{$author.email$}$endif$$endfor$ - $if(authorwithinstitute)$ $for(institute)$ \address[$institute.id$]{$institute.name$} $endfor$ $endif$ - % generate corresponding authors. - % \StrBehind is from xstring package - \ifnum \hascorr=1 - \def\corrauths{ - $for(author)$$if(author.correspondence)$and $author.name$ ($author.email$) $endif$$endfor$} - \cortext[corrauth]{Corresponding to \StrBehind*{\corrauths}{and }.} - \fi - - % generate equal contributing authors. - \ifnum \haseqc=1 - \def\eqa{$for(author)$$if(author.equal-contributor)$and $author.name$ $endif$$endfor$} - \cortext[eqcon]{\StrBehind*{\eqa}{and } are equally contributed to this work.} - \fi - - $for(footnote)$ - \fntext[$footnote.id$]{$footnote.text$} - $endfor$ - - $if(abstract)$ - \begin{abstract} - $abstract$ - \end{abstract} - $if(keywords)$ - \begin{keyword} - $for(keywords/allbutlast)$$keywords$ \sep $endfor$ - $for(keywords/last)$$keywords$$endfor$ - \end{keyword} - $endif$ - $endif$ -\end{frontmatter} - -$body$ - -$if(authorwithinstitute)$ -$else$ -\section{Author Information} - -\getcorrauthinfo{} - -\getotherauthinfo{} - -$endif$ - - -$if(natbib)$ -$if(bibliography)$ -$if(biblio-title)$ -$if(book-class)$ -\renewcommand\bibname{$biblio-title$} -$else$ -\renewcommand\refname{$biblio-title$} -$endif$ -$endif$ -\bibliography{$bibliography$} -$endif$ -$endif$ - -$for(include-after)$ -$include-after$ -$endfor$ -\end{document} diff --git a/_extensions/inst/tex/elsevier-harvard.csl b/_extensions/inst/tex/elsevier-harvard.csl deleted file mode 100755 index 5d88c51..0000000 --- a/_extensions/inst/tex/elsevier-harvard.csl +++ /dev/null @@ -1,239 +0,0 @@ - - diff --git a/_extensions/inst/tex/header.tex b/_extensions/inst/tex/header.tex deleted file mode 100755 index a10af4d..0000000 --- a/_extensions/inst/tex/header.tex +++ /dev/null @@ -1,74 +0,0 @@ -\usepackage{enumitem} -\usepackage{fontspec} -\usepackage{float} -\usepackage[normalem]{ulem} -\usepackage{hyperref} -\usepackage{nameref} %needed by zref-xr -\usepackage{zref-xr,zref-hyperref,zref-user} -\usepackage{xr-hyper} - - -\setkomafont{author}{\normalsize} - -\makeatletter -\renewcommand{\title}[1]{\gdef\@title{\large\textbf{#1}}} % Adjust \Huge or other font commands -% \renewcommand{\author}[1]{\gdef\@author{\normalsize\textrm{#1}}} % Adjust \Huge or other font commands -% \renewcommand{\author}[1]{\normalsize\textit{#1}} % Use \normalsize and \textit for customization -\makeatother - -\usepackage{adjustbox} -% \usepackage{xcolor} -\usepackage{mdframed} -\newmdenv[topline=false, - leftline=true, - bottomline=false, - rightline=false, - linewidth=3pt, - %backgroundcolor=lightgray, - linecolor=gray!30, - backgroundcolor=gray!5, - skipabove=\topsep, - skipbelow=\topsep, - leftmargin=0pt, - rightmargin=0pt, - innertopmargin=0pt, - innerbottommargin=0pt - ]{refquote} -\newmdenv[topline=false, - leftline=true, - bottomline=false, - rightline=false, - linewidth=3pt, - %backgroundcolor=lightgray, - backgroundcolor=red!3!white, - linecolor=red!30!white, - skipabove=\topsep, - skipbelow=\topsep, - leftmargin=0pt, - rightmargin=0pt, - innertopmargin=10pt, - innerbottommargin=10pt - ]{question} -% setup hyperlink for page and line number -\def\msname{MS} -\def\smname{SM} -\setenumerate{labelsep=*, leftmargin=1.0pc} -%\zexternaldocument*{ManuscriptNew\veraa} -\zexternaldocument*{\msname} -\zexternaldocument*{\smname} -\newcommand{\hlabel}[1]{\label{#1}\hypertarget{#1}{ - \linelabel{line:#1}}} -%\externaldocument[si-]{\smname\veraa}[\smname\veraa.pdf] -\makeatletter -\newcommand{\clab}[2][]{ - \protected@write\@auxout{\let\clab\@secondoftwo}{ - \string\newlabel{r:#1}{{#2}{}}}% - \hlabel{#1}#2\hlabel{#1end}} -\makeatother -\newcommand{\zhypera}[1]{\href[pdfnewwindow]{\msname.pdf\##1}{\\[1ex]\textbf{Page \zpageref{#1}, Line -\zref{line:#1}--\zref{line:#1end}:}\\}} -\newcommand{\cref}[1]{\begin{refquote}\zhypera{#1}{\zref{r:#1}}\\[-0.5ex]\end{refquote}} -% \newenvironment{ra}[1][\unskip]{\par \noindent \\[-1ex] \textbf{Response/Action:}\par\bf}{\ \\} -\renewenvironment{quote}{\begin{question}}{\end{question}} -% \renewenvironment{verbatim}{\begin{ra}}{\end{ra}} - diff --git a/_extensions/inst/tex/nature-biotechnology.csl b/_extensions/inst/tex/nature-biotechnology.csl deleted file mode 100644 index 216c8b9..0000000 --- a/_extensions/inst/tex/nature-biotechnology.csl +++ /dev/null @@ -1,17 +0,0 @@ - - diff --git a/_extensions/inst/tex/nature.csl b/_extensions/inst/tex/nature.csl deleted file mode 100644 index 7b058ba..0000000 --- a/_extensions/inst/tex/nature.csl +++ /dev/null @@ -1,154 +0,0 @@ - - diff --git a/_extensions/inst/tex/supp.cls b/_extensions/inst/tex/supp.cls deleted file mode 100755 index c7c1e9e..0000000 --- a/_extensions/inst/tex/supp.cls +++ /dev/null @@ -1,1359 +0,0 @@ -%% -%% This is file `supp.cls', -%% generated with the docstrip utility. -%% -%% The original source files were: -%% -%% supp.dtx (with options: `class') -%% -%% Copyright 2007-2020 Elsevier Ltd -%% -%% This file is part of the 'supp Bundle'. -%% ------------------------------------------- -%% -%% It may be distributed under the conditions of the LaTeX Project Public -%% License, either version 1.2 of this license or (at your option) any -%% later version. The latest version of this license is in -%% http://www.latex-project.org/lppl.txt -%% and version 1.2 or later is part of all distributions of LaTeX -%% version 1999/12/01 or later. -%% -%% The list of all files belonging to the 'supp Bundle' is -%% given in the file `manifest.txt'. -%% -%% -%% -%% - \def\RCSfile{supp}% - \def\RCSversion{3.3}% - \def\RCSdate{2020/11/20}% - \def\@shortjnl{\relax} - \def\@journal{Elsevier Ltd} - \def\@company{Elsevier Ltd} - \def\@issn{000-0000} - \def\@shortjid{supp} -\NeedsTeXFormat{LaTeX2e}[1995/12/01] -\ProvidesClass{\@shortjid}[\RCSdate, \RCSversion: \@journal] -\def\ABD{\AtBeginDocument} -\newif\ifpreprint \preprintfalse -\newif\ifnonatbib \nonatbibfalse -\newif\iflongmktitle \longmktitlefalse -\newif\ifnopreprintline \nopreprintlinefalse -\newif\ifdoubleblind \doubleblindfalse - -\newif\ifuseexplthreefunctions \useexplthreefunctionsfalse - -\IfFileExists{expl3.sty}{% - \global\useexplthreefunctionstrue% - \RequirePackage{expl3}}{} -\ifuseexplthreefunctions\relax% -\IfFileExists{xparse.sty}{\RequirePackage{xparse}}{} -\IfFileExists{etoolbox.sty}{\RequirePackage{etoolbox}}{} -\fi - -\def\@blstr{1} -\newdimen\@bls -\@bls=\baselineskip - -\def\@finalWarning{% - *****************************************************\MessageBreak - This document is typeset in the CRC style which\MessageBreak - is not suitable for submission.\MessageBreak - \MessageBreak - Please typeset again using 'preprint' option\MessageBreak - for creating PDF suitable for submission.\MessageBreak - ******************************************************\MessageBreak -} - -\DeclareOption{preprint}{\global\preprinttrue - \gdef\@blstr{1}\xdef\jtype{0}% - \AtBeginDocument{\@twosidefalse\@mparswitchfalse}} -\DeclareOption{nopreprintline}{\global\nopreprintlinetrue} -\DeclareOption{final}{\gdef\@blstr{1}\global\preprintfalse} -\DeclareOption{review}{\global\preprinttrue\gdef\@blstr{1.5}} -\DeclareOption{authoryear}{\xdef\@biboptions{round,authoryear}} -\DeclareOption{number}{\xdef\@biboptions{numbers}} -\DeclareOption{numbers}{\xdef\@biboptions{numbers}} -\DeclareOption{nonatbib}{\global\nonatbibtrue} -\DeclareOption{longtitle}{\global\longmktitletrue} -\DeclareOption{5p}{\xdef\jtype{5}\global\preprintfalse - \ExecuteOptions{twocolumn}} - \def\jtype{0} -\DeclareOption{3p}{\xdef\jtype{3}\global\preprintfalse} -\DeclareOption{1p}{\xdef\jtype{1}\global\preprintfalse - \AtBeginDocument{\@twocolumnfalse}} -\DeclareOption{times}{\IfFileExists{txfonts.sty}% - {\AtEndOfClass{\RequirePackage{txfonts}% - \gdef\ttdefault{cmtt}% - \let\iint\relax - \let\iiint\relax - \let\iiiint\relax - \let\idotsint\relax - \let\openbox\relax}}{\AtEndOfClass{\RequirePackage{times}}}} - -\DeclareOption{endfloat}{\IfFileExists{endfloat.sty} - {\AtEndOfClass{\RequirePackage[markers]{endfloat}}}{}} -\DeclareOption{endfloats}{\IfFileExists{endfloat.sty} - {\AtEndOfClass{\RequirePackage[markers]{endfloat}}}{}} -\DeclareOption{numafflabel} - {\AtBeginDocument{\def\theaffn{\arabic{affn}}}} %*% -\DeclareOption{lefttitle} - {\AtBeginDocument{\def\supptitlealign{flushleft}}} %*% -\DeclareOption{centertitle} - {\AtBeginDocument{\def\supptitlealign{center}}} %*% -\DeclareOption{reversenotenum} - {\AtBeginDocument{\def\theaffn{\arabic{affn}} - \def\thefnote{\alph{fnote}}}} -\DeclareOption{doubleblind}{\doubleblindtrue} - -\ExecuteOptions{a4paper,10pt,oneside,onecolumn,number,preprint,centertitle} -\DeclareOption*{\PassOptionsToClass{\CurrentOption}{article}} -\ProcessOptions -\LoadClass{article} -\RequirePackage{graphicx} -\let\comma\@empty -\let\tnotesep\@empty -\let\@title\@empty - -\def\useelstitle{} - -\def\title#1{\g@addto@macro\@title{#1% - \global\let\tnoteref\@gobble}% - \g@addto@macro\useelstitle{#1}} - -\def\elsLabel#1{\@bsphack\protected@write\@auxout{}% - {\string\Newlabel{#1}{\@currentlabel}}\@esphack} -\def\Newlabel#1#2{\expandafter\xdef\csname X@#1\endcsname{#2}} - -\def\elsRef#1{\@ifundefined{X@#1}{0}{\csname X@#1\endcsname}} - -\let\@tnotemark\@empty - -\ifdoubleblind - \def\tnotemark[#1]{} -\else - \def\tnotemark[#1]{\@for\mytmark:=#1\do{% - \expandafter\ifcase\elsRef{\mytmark}\or$^{\star}$\or - $^{,\star\star}$\fi - }% -} -\fi - -\def\tnoteref#1{\tnotemark[{#1}]} -\let\@tnotes\@empty -\newcounter{tnote} -\def\tnotetext[#1]#2{\g@addto@macro\@tnotes{% - \stepcounter{tnote}\elsLabel{#1}% - \def\thefootnote{\ifcase\c@tnote\or$\star$\or$\star\star$\fi}% - \footnotetext{#2}}} - -\let\@nonumnotes\@empty -\def\nonumnote#1{\g@addto@macro\@nonumnotes{% - \let\thefootnote\relax\footnotetext{#1}}} - -\newcounter{fnote} -\def\thefnote{\arabic{fnote}} -\def\fnmark[#1]{\let\comma\@empty - \def\@fnmark{\@for\@@fnmark:=#1\do{% - \edef\fnotenum{\@ifundefined{X@\@@fnmark}{1}{\elsRef{\@@fnmark}}}% - \unskip\comma\fnotenum\let\comma,}}% -} - -\def\fnref#1{\fnmark[#1]} - -\let\@fnotes\@empty\let\@fnmark\@empty -\def\fntext[#1]#2{\g@addto@macro\@fnotes{% - \refstepcounter{fnote}\elsLabel{#1}% - \def\thefootnote{\c@fnote}% - \global\setcounter{footnote}{\c@fnote}% - \footnotetext{#2}}} - -\def\cormark[#1]{\edef\cnotenum{\elsRef{#1}}% - \unskip\textsuperscript{\sep\ifcase\cnotenum\or - $\ast$\or$\ast\ast$\fi\hspace{-1pt}}\let\sep=,} - -\let\@cormark\@empty -\let\@cornotes\@empty -\newcounter{cnote} -\def\cortext[#1]#2{\g@addto@macro\@cornotes{% - \refstepcounter{cnote}\elsLabel{#1}% - \def\thefootnote{\ifcase\thecnote\or$\ast$\or - $\ast\ast$\fi}% - \footnotetext{#2}}} - -\let\@corref\@empty -\def\corref#1{\edef\cnotenum{\elsRef{#1}}% - \edef\@corref{\ifcase\cnotenum\or - $\ast$\or$\ast\ast$\fi\hskip-1pt}} - -\def\resetTitleCounters{\c@cnote=0 - \c@fnote=0 \c@tnote=0 \c@footnote=0} - -\let\eadsep\@empty -\def\@elseads{} -\let\@elsuads\@empty -\let\@cormark\@empty -\def\hashchar{\expandafter\@gobble\string\~} -\def\underscorechar{\expandafter\@gobble\string\_} -\def\lbracechar{\expandafter\@gobble\string\{} -\def\rbracechar{\expandafter\@gobble\string\}} - -\gdef\ead{\@ifnextchar[{\@uad}{\@ead}} -\gdef\@ead#1{\bgroup - \def\_{\underscorechar}% - \def\{{\lbracechar}% - \def~{\hashchar}% - \def\}{\rbracechar}% - \edef\tmp{\the\@eadauthor}% - \immediate\write\@auxout{\string\emailauthor - {#1}{\expandafter\strip@prefix\meaning\tmp}}% - \egroup -} -\newcounter{ead} -\gdef\emailauthor#1#2{\stepcounter{ead}% - \g@addto@macro\@elseads{\raggedright% - \let\corref\@gobble\def\@@tmp{#1}% - \eadsep{\ttfamily\expandafter\strip@prefix\meaning\@@tmp} - (#2)\def\eadsep{\unskip,\space}}% -} -\gdef\@uad[#1]#2{\bgroup - \def~{\hashchar}% - \def\_{\underscorechar}% - \def~{\hashchar}% - \def\}{\rbracechar}% - \edef\tmp{\the\@eadauthor} - \immediate\write\@auxout{\string\urlauthor - {#2}{\expandafter\strip@prefix\meaning\tmp}}% - \egroup -} -\gdef\urlauthor#1#2{\g@addto@macro\@elsuads{\let\corref\@gobble% - \def\@@tmp{#1}\raggedright\eadsep - {\ttfamily\expandafter\strip@prefix\meaning\@@tmp}\space(#2)% - \def\eadsep{\unskip,\space}}% -} - -\def\elsauthors{} -\def\useauthors{} -\def\elsprelimauthors{} - -\def\pprinttitle{} -\let\authorsep\@empty -\let\prelimauthorsep\@empty -\let\sep\@empty -\newcounter{author} -\def\author{\@ifnextchar[{\@@author}{\@author}} - -\newtoks\@eadauthor -\def\@@author[#1]#2{% - \g@addto@macro\elsprelimauthors{% - \prelimauthorsep#2% - \def\prelimauthorsep{\unskip,\space}}% - \g@addto@macro\elsauthors{% - \def\baselinestretch{1}% - \authorsep#2\unskip\textsuperscript{%#1% - \@for\@@affmark:=#1\do{% - \edef\affnum{\@ifundefined{X@\@@affmark}{1}{\elsRef{\@@affmark}}}% - \unskip\sep\affnum\let\sep=,}% - \ifx\@fnmark\@empty\else\unskip\sep\@fnmark\let\sep=,\fi - \ifx\@corref\@empty\else\unskip\sep\@corref\let\sep=,\fi - }% - \def\authorsep{\unskip,\space}% - \global\let\sep\@empty\global\let\@corref\@empty - \global\let\@fnmark\@empty}% - \@eadauthor={#2}% - \g@addto@macro\useauthors{#2; }% -} - -\def\@author#1{% - \g@addto@macro\elsprelimauthors{% - \prelimauthorsep#1% - \def\prelimauthorsep{\unskip,\space}}% - \g@addto@macro\elsauthors{\normalsize% - \def\baselinestretch{1}% - \upshape\authorsep#1\unskip\textsuperscript{% - \ifx\@fnmark\@empty\else\unskip\sep\@fnmark\let\sep=,\fi - \ifx\@corref\@empty\else\unskip\sep\@corref\let\sep=,\fi - }% - \def\authorsep{\unskip,\space}% - \global\let\@fnmark\@empty - \global\let\@corref\@empty \global\let\sep\@empty}% - \@eadauthor={#1}% - \g@addto@macro\useauthors{#1; }% -} - -\AtBeginDocument{% - \@ifpackageloaded{hyperref}{% - \expandafter\gdef\csname Hy@title\endcsname{\useelstitle}% - \expandafter\gdef\csname Hy@author\endcsname{\useauthors}% - }{} -} - -\def\elsaddress{} -\def\addsep{\par\vskip6pt} - -\def\@alph#1{% - \ifcase#1\or a\or b\or c\or d\or e\or f\or g\or h\or i\or j\or k\or - l\or m\or n\or o\or p\or q\or r\or s\or t\or u\or v\or w\or x\or - y\or z% - \or aa\or ab\or ac\or ad\or ae\or af\or ag\or ah\or ai\or aj\or - ak\or al\or am\or an\or ao\or ap\or aq\or ar\or as\or at\or au\or - av\or aw\or ax\or ay\or az% - \or ba\or bb\or bc\or bd\or be\or bf\or bg\or bh\or bi\or bj\or - bk\or bl\or bm\or bn\or bo\or bp\or bq\or br\or bs\or bt\or bu\or - bv\or bw\or bx\or by\or bz% - \or ca\or cb\or cc\or cd\or ce\or cf\or cg\or ch\or ci\or cj\or - ck\or cl\or cm\or cn\or co\or cp\or cq\or cr\or cs\or ct\or cu\or - cv\or cw\or cx\or cy\or cz% - \or da\or db\or dc\or dd\or de\or df\or dg\or dh\or di\or dj\or - dk\or dl\or dm\or dn\or do\or dp\or dq\or dr\or ds\or dt\or du\or - dv\or dw\or dx\or dy\or dz% - \or ea\or eb\or ec\or ed\or ee\or ef\or eg\or eh\or ei\or ej\or - ek\or el\or em\or en\or eo\or ep\or eq\or er\or es\or et\or eu\or - ev\or ew\or ex\or ey\or ez% - \or fa\or fb\or fc\or fd\or fe\or ff\or fg\or fh\or fi\or fj\or - fk\or fl\or fm\or fn\or fo\or fp\or fq\or fr\or fs\or ft\or fu\or - fv\or fw\or fx\or fy\or fz% - \or ga\or gb\or gc\or gd\or ge\or gf\or gg\or gh\or gi\or gj\or - gk\or gl\or gm\or gn\or go\or gp\or gq\or gr\or gs\or gt\or gu\or - gv\or gw\or gx\or gy\or gz% - \else\@ctrerr\fi} - -\newcounter{affn} -\renewcommand\theaffn{\alph{affn}} - -\ifuseexplthreefunctions\relax% - \ExplSyntaxOn - \def\ca_affitem_postskip{\mbox{~}\unskip\ignorespaces} - %%Author Address - \DeclareDocumentCommand \ca_organization { O{,} m } - { - % #2 #1\mbox{~}\unskip\ignorespaces - \csgappto { ca_affiliation_values } { #2 #1\ca_affitem_postskip } - } - \DeclareDocumentCommand \ca_postal_code { O{,} m } - { - % #2 #1\mbox{~}\unskip\ignorespaces - \csgappto { ca_affiliation_values } { #2 #1\ca_affitem_postskip } - } - \DeclareDocumentCommand \ca_aff_city { O{,} m } - { - % #2 #1\mbox{~}\unskip\ignorespaces - \csgappto { ca_affiliation_values } { #2 #1\ca_affitem_postskip } - } - \DeclareDocumentCommand \ca_address_line { O{,}m } - { - % #2 #1\mbox{~}\unskip\ignorespaces - \csgappto { ca_affiliation_values } { #2 #1\ca_affitem_postskip } - } - \DeclareDocumentCommand \ca_state { O{,} m } - { - % #2 #1\mbox{~}\unskip\ignorespaces - \csgappto { ca_affiliation_values } { #2 #1\ca_affitem_postskip } - } - \DeclareDocumentCommand \ca_country { O{ } m } - { - % #2 #1 - \csgappto { ca_affiliation_values } { #2 #1 } - } - - \DeclareDocumentCommand \ca_stm_organization { O{,} m } - { - #2 #1\ca_affitem_postskip - } - \DeclareDocumentCommand \ca_stm_postal_code { O{,} m } - { - #2 #1\ca_affitem_postskip - } - \DeclareDocumentCommand \ca_stm_aff_city { O{,} m } - { - #2 #1\ca_affitem_postskip - } - \DeclareDocumentCommand \ca_stm_aff_address_line { O{,}m } - { - #2 #1\ca_affitem_postskip - } - \DeclareDocumentCommand \ca_stm_state { O{,} m } - { - #2 #1\ca_affitem_postskip - } - \DeclareDocumentCommand \ca_stm_country { O{ } m } - { - #2 #1 - } - - \keys_define:nn { stm / affiliation } - { - op .tl_set_x:N = \l_organization_punc_tl, - oraganizationsep .tl_set_x:N = \l_organization_punc_tl, - ap .tl_set_x:N = \l_address_line_punc_tl, - addresslinesep .tl_set_x:N = \l_address_line_punc_tl, - cp .tl_set_x:N = \l_city_punc_tl, - citysep .tl_set_x:N = \l_city_punc_tl, - pp .tl_set_x:N = \l_postal_code_punc_tl, - postcodesep .tl_set_x:N = \l_postal_code_punc_tl, - sp .tl_set_x:N = \l_state_punc_tl, - statesep .tl_set_x:N = \l_state_punc_tl, - o .code:n = { \ca_organization[\l_organization_punc_tl]{#1} }, - organization .code:n = { \ca_organization[\l_organization_punc_tl]{#1} }, - a .code:n = { \ca_address_line[\l_address_line_punc_tl]{#1} }, - addressline .code:n = { \ca_address_line[\l_address_line_punc_tl]{#1} }, - c .code:n = { \ca_aff_city[\l_city_punc_tl]{#1} }, - city .code:n = { \ca_aff_city[\l_city_punc_tl]{#1} }, - p .code:n = { \ca_postal_code[\l_postal_code_punc_tl]{#1} }, - postcode .code:n = { \ca_postal_code[\l_postal_code_punc_tl]{#1} }, - s .code:n = { \ca_state[\l_state_punc_tl]{#1} }, - state .code:n = { \ca_state[\l_state_punc_tl]{#1} }, - orp .tl_set_x:N = \l_organization_punc_tl, - adp .tl_set_x:N = \l_address_line_punc_tl, - cip .tl_set_x:N = \l_city_punc_tl, - pcp .tl_set_x:N = \l_postal_code_punc_tl, - stp .tl_set_x:N = \l_state_punc_tl, - cyp .tl_set_x:N = \l_country_punc_tl, - or .code:n = { \ca_organization[\l_organization_punc_tl]{#1} }, - ad .code:n = { \ca_address_line[\l_address_line_punc_tl]{#1} }, - ci .code:n = { \ca_aff_city[\l_city_punc_tl]{#1} }, - pc .code:n = { \ca_postal_code[\l_postal_code_punc_tl]{#1} }, - st .code:n = { \ca_state[\l_state_punc_tl]{#1} }, - cy .code:n = { \ca_country[\l_country_punc_tl]{#1} }, - country .code:n = { \ca_country[\l_country_punc_tl]{#1} }, - unknown .code:n = { - \ifstrempty { #1 } { - \csxappto { ca_affiliation_values } - { {\l_keys_key_tl}~ } - } { - \csxappto { ca_affiliation_values } - { {#1}~ } - } - } - } - - \cs_set:Npn \__reset_affiliation: - { - \tl_gset:Nn \l_organization_punc_tl { , } - \tl_gset:Nn \l_address_line_punc_tl { , } - \tl_gset:Nn \l_city_punc_tl { , } - \tl_gset:Nn \l_postal_code_punc_tl { , } - \tl_gset:Nn \l_state_punc_tl { , } - \tl_gset:Nn \l_country_punc_tl { } - } - - \DeclareDocumentCommand\affiliation{ o m }{ - \__reset_affiliation: - \csgdef { ca_affiliation_values } { } - \IfNoValueTF { #2 } - { } - { - \keys_set:nn { stm / affiliation } { #2 } - } - \csgappto{elsaddress}{ - \def\baselinestretch{1}% - \refstepcounter{affn} - \xdef\@currentlabel{\theaffn} - \IfNoValueTF { #1 } - { } - { \elsLabel{#1} } - \textsuperscript{\theaffn}} - \csxappto{elsaddress}{ - \csuse { ca_affiliation_values } - \par - } - } - \ExplSyntaxOff - \else% - \def\caaffitempostskip{\space} - - \DeclareRobustCommand\caorganization[2][,]{% - \g@addto@macro\caaffiliationvalues{#2#1\caaffitempostskip}% - } - \DeclareRobustCommand\capostalcode[2][,]{% - \g@addto@macro\caaffiliationvalues{#2#1\caaffitempostskip}% - } - \DeclareRobustCommand\caaffcity[2][,]{% - \g@addto@macro\caaffiliationvalues{#2#1\caaffitempostskip}% - } - \DeclareRobustCommand\caaddressline[2][,]{% - \g@addto@macro\caaffiliationvalues{#2#1\caaffitempostskip}% - } - \DeclareRobustCommand\castate[2][,]{% - \g@addto@macro\caaffiliationvalues{#2#1\caaffitempostskip}% - } - \DeclareRobustCommand\cacountry[2][,]{% - \g@addto@macro\caaffiliationvalues{#2#1\caaffitempostskip}% - } - \DeclareRobustCommand\castmorganization[2][,]{% - #2#1\caaffitempostskip% - } - \DeclareRobustCommand\castmpostalcode[2][,]{% - #2#1\caaffitempostskip% - } - \DeclareRobustCommand\castmaffcity[2][,]{% - #2#1\caaffitempostskip% - } - \DeclareRobustCommand\castmaddressline[2][,]{% - #2#1\caaffitempostskip% - } - \DeclareRobustCommand\castmstate[2][,]{% - #2#1\caaffitempostskip% - } - \DeclareRobustCommand\castmcountry[2][,]{% - #2#1\caaffitempostskip% - } - - \define@key{affiliation}{op}{\xdef\@organizationpunc{#1}} - \define@key{affiliation}{orp}{\xdef\@organizationpunc{#1}} - \define@key{affiliation}{organizationsep}{\xdef\@organizationpunc{#1}} - \define@key{affiliation}{ap}{\xdef\@addresslinepunc{#1}} - \define@key{affiliation}{adp}{\xdef\@addresslinepunc{#1}} - \define@key{affiliation}{addresslinesep}{\xdef\@addresslinepunc{#1}} - \define@key{affiliation}{cp}{\xdef\@citypunc{#1}} - \define@key{affiliation}{cip}{\xdef\@citypunc{#1}} - \define@key{affiliation}{cyp}{\xdef\@countrypunc{#1}} - \define@key{affiliation}{citysep}{\xdef\@citypunc{#1}} - \define@key{affiliation}{pp}{\xdef\@postcodepunc{#1}} - \define@key{affiliation}{pop}{\xdef\@postcodepunc{#1}} - \define@key{affiliation}{postcodesep}{\xdef\@postcodepunc{#1}} - \define@key{affiliation}{sp}{\xdef\@statepunc{#1}} - \define@key{affiliation}{stp}{\xdef\@statepunc{#1}} - \define@key{affiliation}{statesep}{\xdef\@statepunc{#1}} - \define@key{affiliation}{countrysep}{\xdef\@countrypunc{#1}} - - \define@key{affiliation}{organization}{% - \caorganization[\@organizationpunc]{#1}} - \define@key{affiliation}{addressline}{% - \caaddressline[\@addresslinepunc]{#1}} - \define@key{affiliation}{city}{% - \caaffcity[\@citypunc]{#1}} - \define@key{affiliation}{postcode}{% - \capostalcode[\@postcodepunc]{#1}} - \define@key{affiliation}{state}{% - \castate[\@statepunc]{#1}} - \define@key{affiliation}{or}{% - \caorganization[\@organizationpunc]{#1}} - \define@key{affiliation}{ad}{% - \caaddressline[\@addresslinepunc]{#1}} - \define@key{affiliation}{ci}{% - \caaffcity[\@citypunc]{#1}} - \define@key{affiliation}{po}{% - \capostalcode[\@postcodepunc]{#1}} - \define@key{affiliation}{st}{% - \castate[\@statepunc]{#1}} - \define@key{affiliation}{o}{% - \caorganization[\@organizationpunc]{#1}} - \define@key{affiliation}{a}{% - \caaddressline[\@addresslinepunc]{#1}} - \define@key{affiliation}{c}{% - \cacity[\@citypunc]{#1}} - \define@key{affiliation}{p}{% - \capostcode[\@postcodepunc]{#1}} - \define@key{affiliation}{s}{% - \castate[\@statepunc]{#1}} - \define@key{affiliation}{cy}{% - \cacountry[\@countrypunc]{#1}} - \define@key{affiliation}{country}{% - \cacountry[\@countrypunc]{#1}} - - \gdef\@resetaffiliation{% - \gdef\@organizationpunc{,}% - \gdef\@addresslinepunc{,}% - \gdef\@citypunc{,}% - \gdef\@statepunc{,}% - \gdef\@postcodepunc{,}% - \gdef\@countrypunc{}% - } - - \def\affiliation{\@ifnextchar[{\@@affiliation}{\@affiliation}} - - \newcommand*{\newstmrobustcmd}{} - \protected\def\newstmrobustcmd{\@star@or@long\stmetb@new@command} - - \def\stmetb@new@command#1{\@testopt{\stmetb@newcommand#1}0} - - \def\stmetb@newcommand#1[#2]{% - \@ifnextchar[%] - {\stmetb@xargdef#1[#2]} - {\ifx\l@ngrel@x\relax - \let\l@ngrel@x\protected - \else - \protected\def\l@ngrel@x{\protected\long}% - \fi - \@argdef#1[#2]}} - - \long\def\stmetb@xargdef#1[#2][#3]#4{% - \@ifdefinable#1{% - \expandafter\protected - \expandafter\def - \expandafter#1% - \expandafter{% - \expandafter\@testopt - \csname\string#1\endcsname{#3}}% - \expandafter\@yargdef\csname\string#1\endcsname\tw@{#2}{#4}}} - % - \newcommand{\ifstmundef}[1]{% - \ifdefined#1% - \ifx#1\relax - \expandafter\expandafter - \expandafter\@firstoftwo - \else - \expandafter\expandafter - \expandafter\@secondoftwo - \fi - \else - \expandafter\@firstoftwo - \fi} - \newcommand{\stmexpandonce}[1]{% - \unexpanded\expandafter{#1}} - \newstmrobustcmd{\gstmappto}[2]{% - \ifundef{#1} - {\xdef#1{\unexpanded{#2}}} - {\xdef#1{\stmexpandonce#1\unexpanded{#2}}}} - \newstmrobustcmd{\xstmappto}[2]{% - \ifstmundef{#1} - {\xdef#1{#2}} - {\xdef#1{\stmexpandonce#1#2}}} - - \long\def\@@affiliation[#1]#2{% - \@resetaffiliation% - \gdef\caaffiliationvalues{}% - \elsLabel{#1}% - \setkeys{affiliation}{#2}% - \g@addto@macro\elsaddress{% - \def\baselinestretch{1}% - \refstepcounter{affn}% - \xdef\@currentlabel{\theaffn}% - \elsLabel{#1}% - \textsuperscript{\theaffn}} - \xstmappto\elsaddress{\caaffiliationvalues\par}} - - \long\def\@affiliation#1{% - \@resetaffiliation% - \gdef\caaffiliationvalues{}% - \setkeys{affiliation}{#1}% - \g@addto@macro\elsauthors{% - \def\baselinestretch{1}}% - \xstmappto\elsaddress{\caaffiliationvalues\par}} -\fi - -\def\address{\@ifnextchar[{\@@address}{\@address}} - -\long\def\@@address[#1]#2{\g@addto@macro\elsaddress{% - \def\baselinestretch{1}% - \refstepcounter{affn} - \xdef\@currentlabel{\theaffn} - \elsLabel{#1}% - \textsuperscript{\theaffn}#2\par}} - -\long\def\@address#1{\g@addto@macro\elsauthors{% - \def\baselinestretch{1}% - \addsep\footnotesize\itshape#1\def\addsep{\par\vskip6pt}% - \def\authorsep{\par\vskip8pt}}} - -\newbox\absbox -\renewenvironment{abstract}{\global\setbox\absbox=\vbox\bgroup - \hsize=\textwidth\def\baselinestretch{1}% - \noindent\unskip\textbf{\@suppabstitle} %*% - \par\medskip\noindent\unskip\ignorespaces} - {\egroup} - -\newbox\supphighlightsbox -\newbox\suppgrabsbox -\def\@supphighlightstitle{Highlights} -\def\@suppgrabstitle{Graphical Abstract} -\newif\ifelsprelimpagegrabs\global\elsprelimpagegrabsfalse -\newif\ifelsprelimpagehl\global\elsprelimpagehlfalse -\def\suppprelims{% - \ifelsprelimpagegrabs\relax% - \thispagestyle{empty}% - \unvbox\suppgrabsbox% - \pagebreak\clearpage% - \fi% - \ifelsprelimpagehl\relax% - \thispagestyle{empty} - \unvbox\supphighlightsbox% - \pagebreak\clearpage% - \setcounter{page}{1}% - \fi% -} -\newenvironment{highlights}{% - \global\elsprelimpagehltrue% - \global\setbox\supphighlightsbox=\vbox\bgroup - \hsize=\textwidth\def\baselinestretch{1}% - \noindent\unskip{\Large\@supphighlightstitle}%*% - \par\vskip12pt\noindent\unskip\ignorespaces\textbf{\@title}% - \ifx\elsprelimauthors\@empty\relax\else% - \par\vskip6pt\noindent\unskip\ignorespaces\elsprelimauthors% - \fi% - \par\medskip\noindent\unskip\ignorespaces - \begin{itemize} - } - {\end{itemize} - \egroup} -\newenvironment{graphicalabstract}{% - \global\elsprelimpagegrabstrue% - \global\setbox\suppgrabsbox=\vbox\bgroup - \hsize=\textwidth\def\baselinestretch{1}% - \noindent\unskip{\Large\@suppgrabstitle}%*% - \par\vskip12pt\noindent\unskip\ignorespaces\textbf{\@title}% - \ifx\elsprelimauthors\@empty\relax\else% - \par\vskip6pt\noindent\unskip\ignorespaces\elsprelimauthors% - \fi% - \par\medskip\noindent\unskip\ignorespaces} - {\egroup} - -\newbox\keybox -\let\@suppkwdtitle\@empty %*% -\def\keywordtitle#1{\gdef\@suppkwdtitle{#1}} %*% -\def\keywordtitlesep#1{\gdef\@suppkeywordtitlesep{#1}} %*% -\keywordtitle{Keywords} %*% -\keywordtitlesep{:\ } -\def\keyword{% - \def\sep{\unskip, }% - \def\MSC{\@ifnextchar[{\@MSC}{\@MSC[2000]}} - \def\@MSC[##1]{\par\leavevmode\hbox {\it ##1~MSC:\space}}% - \def\PACS{\par\leavevmode\hbox {\it PACS:\space}}% - \def\JEL{\par\leavevmode\hbox {\it JEL:\space}}% - \global\setbox\keybox=\vbox\bgroup\hsize=\textwidth - \normalsize\normalfont\def\baselinestretch{1} - \parskip\z@ - \noindent\textit{\@suppkwdtitle\@elsarticlekeywordtitlesep} - \raggedright % Keywords are not justified. - \ignorespaces} -\def\endkeyword{\par \egroup} - -\newdimen\Columnwidth -\Columnwidth=\columnwidth - -\def\printFirstPageNotes{% - \iflongmktitle - \let\columnwidth=\textwidth - \fi -\ifdoubleblind -\else - \ifx\@tnotes\@empty\else\@tnotes\fi - \ifx\@nonumnotes\@empty\else\@nonumnotes\fi - \ifx\@cornotes\@empty\else\@cornotes\fi - \ifx\@elseads\@empty\relax\else - \let\thefootnote\relax - \footnotetext{\ifnum\theead=1\relax - \textit{Email address:\space}\else - \textit{Email addresses:\space}\fi - \@elseads}\fi - \ifx\@elsuads\@empty\relax\else - \let\thefootnote\relax - \footnotetext{\textit{URL:\space}% - \@elsuads}\fi -\fi - \ifx\@fnotes\@empty\else\@fnotes\fi - \iflongmktitle\if@twocolumn - \let\columnwidth=\Columnwidth\fi\fi -} - -%% Pushing text to begin on newpage %*% -\def\newpage@after@title{title} -\def\newpage@after@author{author} -\def\newpage@after@abstract{abstract} -\def\newpageafter#1% - {\gdef\@suppnewpageafter{#1}} - -\long\def\pprintMaketitle{\clearpage - \iflongmktitle\if@twocolumn\let\columnwidth=\textwidth\fi\fi - \resetTitleCounters - \def\baselinestretch{1}% - \printFirstPageNotes - \begin{\supptitlealign}% - \thispagestyle{pprintTitle}% - \def\baselinestretch{1}% - \Large\@title\par\vskip18pt% - \ifx\@suppnewpageafter\newpage@after@title% %*% - \newpage - \fi% - \ifdoubleblind - \vspace*{2pc} - \else - \normalsize\elsauthors\par\vskip10pt - \footnotesize\itshape\elsaddress\par\vskip36pt - \fi - \ifx\@suppnewpageafter\newpage@after@author% %*% - \newpage - \fi% - \hrule\vskip12pt - \ifvoid\absbox\else\unvbox\absbox\par\vskip10pt\fi - \ifvoid\keybox\else\unvbox\keybox\par\vskip10pt\fi - \hrule\vskip12pt - \ifx\@suppnewpageafter\newpage@after@abstract% %*% - \newpage - \fi% - \end{\supptitlealign}% - \gdef\thefootnote{\arabic{footnote}}% - } - -\def\printWarning{% - \mbox{}\par\vfill\par\bgroup - \fboxsep12pt\fboxrule1pt - \hspace*{.18\textwidth} - \fcolorbox{gray50}{gray10}{\box\warnbox} - \egroup\par\vfill\thispagestyle{empty} - \setcounter{page}{0} - \clearpage} - -\long\def\finalMaketitle{% - \resetTitleCounters - \def\baselinestretch{1}% - \MaketitleBox - \thispagestyle{pprintTitle}% - \gdef\thefootnote{\arabic{footnote}}% - } - -\long\def\MaketitleBox{% - \resetTitleCounters - \def\baselinestretch{1}% - \begin{\supptitlealign}% - \def\baselinestretch{1}% - \Large\@title\par\vskip18pt - \ifdoubleblind - \vspace*{2pc} - \else - \normalsize\elsauthors\par\vskip10pt - \footnotesize\itshape\elsaddress\par\vskip36pt - \fi - \hrule\vskip12pt - \ifvoid\absbox\else\unvbox\absbox\par\vskip10pt\fi - \ifvoid\keybox\else\unvbox\keybox\par\vskip10pt\fi - \hrule\vskip12pt - \end{\supptitlealign}% -} - -\def\FNtext#1{\par\bgroup\footnotesize#1\egroup} -\newdimen\space@left -\def\alarm#1{\typeout{******************************}% - \typeout{#1}% - \typeout{******************************}% -} - -\def\titlespancalculator#1#2#3#4{% - % break count - \@tempcnta=#4\relax% - % pagebreakcount increment - \advance\@tempcnta by 1\relax% - % title page height - \@tempdima=#1\relax% - % Page height - title page notes height (only for first break) - % Page height - textheight (for remaining breaks) - % Page height - title page notes height - \@tempdimb=#2\relax% - % Remaining title page height - \advance\@tempdima -\the\@tempdimb% - % Checks if remaining title page - % height less than textheight - \ifdim\the\@tempdima>#3\relax% - \titlespancalculator% - {\the\@tempdima}{#3}{#3}{\the\@tempcnta}%Break again - \else% - % Save break count and exit. - \xdef\savetitlepagespan{\the\@tempcnta}% - \fi% -}% - -\long\def\myfor#1#2#3{% - \@tempcnta=#1\relax% - \ifnum#1<#2\relax% - \advance\@tempcnta by 1\relax% - #3% - \myfor{\the\@tempcnta}{#2}{#3}% - \fi} - -\long\def\getSpaceLeft{%\global\@twocolumnfalse% - \global\setbox0=\vbox{\hsize=\textwidth\MaketitleBox}% - \global\setbox1=\vbox{\hsize=\textwidth - \let\footnotetext\FNtext - \printFirstPageNotes}% - \xdef\noteheight{\the\ht1}% - \xdef\titleheight{\the\ht0}% - \@tempdima=\vsize - \advance\@tempdima-\noteheight - \advance\@tempdima-1\baselineskip - \xdef\savefpageheight{\the\@tempdima}% - \setbox2=\vbox{\titlespancalculator{\titleheight}% - {\savefpageheight}{\textheight}{0}}% -} - - \skip\footins=24pt - -\newbox\els@boxa -\newbox\els@boxb - -\ifpreprint - \def\maketitle{\suppprelims\pprintMaketitle} - \else - \ifnum\jtype=1 - \def\maketitle{% - \suppprelims% - \iflongmktitle\getSpaceLeft - \ifdim\noteheight>0pt% - \advance\@tempdima-1.35\baselineskip - \fi% - \global\setbox\els@boxa=\vsplit0 to \@tempdima - \box\els@boxa\par\resetTitleCounters - \thispagestyle{pprintTitle}% - \printFirstPageNotes - \ifnum\savetitlepagespan>1\relax% - \myfor{2}{\savetitlepagespan}{% - \global\setbox\els@boxb=\vsplit0 to \textheight%\@tempdima - \box\els@boxb} - \else% - \fi% - \box0% - \else - \finalMaketitle\printFirstPageNotes - \fi - \gdef\thefootnote{\arabic{footnote}}}% - \else - \ifnum\jtype=5 - \def\maketitle{% - \suppprelims% - \iflongmktitle\getSpaceLeft - \ifdim\noteheight>0pt% - \advance\@tempdima-1.35\baselineskip - \fi% - \global\setbox\els@boxa=\vsplit0 to \@tempdima - \box\els@boxa\par\resetTitleCounters - \thispagestyle{pprintTitle}% - \printFirstPageNotes - \ifnum\savetitlepagespan>1\relax% - \myfor{2}{\savetitlepagespan}{% - \global\setbox\els@boxb=\vsplit0 to \textheight%\@tempdima - \twocolumn[\box\els@boxb]} - \else% - \fi% - \twocolumn[\box0]%\printFirstPageNotes - \else - \twocolumn[\finalMaketitle]\printFirstPageNotes - \fi - \gdef\thefootnote{\arabic{footnote}}} - \else - \if@twocolumn - \def\maketitle{% - \suppprelims% - \iflongmktitle\getSpaceLeft - \ifdim\noteheight>0pt% - \advance\@tempdima-1.35\baselineskip - \fi% - \global\setbox\els@boxa=\vsplit0 to \@tempdima - \box\els@boxa\par\resetTitleCounters - \thispagestyle{pprintTitle}% - \printFirstPageNotes - \ifnum\savetitlepagespan>1\relax% - \myfor{2}{\savetitlepagespan}{% - \global\setbox\els@boxb=\vsplit0 to \textheight%\@tempdima - \twocolumn[\box\els@boxb]} - \else% - \fi% - \twocolumn[\box0]% - \else - \twocolumn[\finalMaketitle]\printFirstPageNotes - \fi - \gdef\thefootnote{\arabic{footnote}}}% - \else - \def\maketitle{% - \suppprelims% - \iflongmktitle\getSpaceLeft - \ifdim\noteheight>0pt% - \advance\@tempdima-1.35\baselineskip - \fi% - \global\setbox\els@boxa=\vsplit0 to \@tempdima - \box\els@boxa\par\resetTitleCounters - \thispagestyle{pprintTitle}% - \printFirstPageNotes - \ifnum\savetitlepagespan>1\relax% - \myfor{2}{\savetitlepagespan}{% - \global\setbox\els@boxb=\vsplit0 to \textheight%\@tempdima - \box\els@boxb} - \else% - \fi% - \box0% - \else - \suppprelims% - \finalMaketitle\printFirstPageNotes - \fi - \gdef\thefootnote{\arabic{footnote}}}% - \fi - \fi - \fi -\fi - -\let\@suppmyfooter\@empty -\let\@suppmyfooteralign\@empty -\def\@suppmyfooteralignleft{L} -\def\@suppmyfooteralignright{R} -\def\@suppmyfooteraligncenter{C} - -\def\myfooter[#1]#2 %*% - {\gdef\@suppmyfooteralign{#1} - \gdef\@suppmyfooter{#2}} - -\def\myfooterfont#1{\gdef\@myfooterfont{#1}} -\myfooterfont{\footnotesize\itshape} -\def\ps@pprintTitle{% - \let\@oddhead\@empty - \let\@evenhead\@empty - \def\@oddfoot{\footnotesize\itshape - \ifx\@journal\@empty - \else\@journal\fi\hfill}% - \let\@evenfoot\@oddfoot} - -\def\@seccntDot{.} -\def\@seccntformat#1{\csname the#1\endcsname\@seccntDot\hskip 0.5em} - -\renewcommand\section{\@startsection {section}{1}{\z@}% - {18\p@ \@plus 6\p@ \@minus 3\p@}% - {9\p@ \@plus 6\p@ \@minus 3\p@}% - {\normalsize\bfseries\boldmath}} -\renewcommand\subsection{\@startsection{subsection}{2}{\z@}% - {12\p@ \@plus 6\p@ \@minus 3\p@}% - {3\p@ \@plus 6\p@ \@minus 3\p@}% - {\normalfont\normalsize\itshape}} -\renewcommand\subsubsection{\@startsection{subsubsection}{3}{\z@}% - {12\p@ \@plus 6\p@ \@minus 3\p@}% - {\p@}% - {\normalfont\normalsize\itshape}} - -\def\paragraph{\secdef{\els@aparagraph}{\els@bparagraph}} -\def\els@aparagraph[#1]#2{\elsparagraph[#1]{#2.}} -\def\els@bparagraph#1{\elsparagraph*{#1.}} - -\newcommand\elsparagraph{\@startsection{paragraph}{4}{0\z@}% - {10\p@ \@plus 6\p@ \@minus 3\p@}% - {-6\p@}% - {\normalfont\itshape}} -\newdimen\leftMargin -\leftMargin=2em -\newtoks\@enLab %\newtoks\@enfont -\def\@enQmark{?} -\def\@enLabel#1#2{% - \edef\@enThe{\noexpand#1{\@enumctr}}% - \@enLab\expandafter{\the\@enLab\csname the\@enumctr\endcsname}% - \@enloop} -\def\@enSpace{\afterassignment\@enSp@ce\let\@tempa= } -\def\@enSp@ce{\@enLab\expandafter{\the\@enLab\space}\@enloop} -\def\@enGroup#1{\@enLab\expandafter{\the\@enLab{#1}}\@enloop} -\def\@enOther#1{\@enLab\expandafter{\the\@enLab#1}\@enloop} -\def\@enloop{\futurelet\@entemp\@enloop@} -\def\@enloop@{% - \ifx A\@entemp \def\@tempa{\@enLabel\Alph }\else - \ifx a\@entemp \def\@tempa{\@enLabel\alph }\else - \ifx i\@entemp \def\@tempa{\@enLabel\roman }\else - \ifx I\@entemp \def\@tempa{\@enLabel\Roman }\else - \ifx 1\@entemp \def\@tempa{\@enLabel\arabic}\else - \ifx \@sptoken\@entemp \let\@tempa\@enSpace \else - \ifx \bgroup\@entemp \let\@tempa\@enGroup \else - \ifx \@enum@\@entemp \let\@tempa\@gobble \else - \let\@tempa\@enOther - \fi\fi\fi\fi\fi\fi\fi\fi - \@tempa} -\newlength{\@sep} \newlength{\@@sep} -\setlength{\@sep}{.5\baselineskip plus.2\baselineskip - minus.2\baselineskip} -\setlength{\@@sep}{.1\baselineskip plus.01\baselineskip - minus.05\baselineskip} -\providecommand{\sfbc}{\rmfamily\upshape} -\providecommand{\sfn}{\rmfamily\upshape} -\def\@enfont{\ifnum \@enumdepth >1\let\@nxt\sfn \else\let\@nxt\sfbc \fi\@nxt} -\def\enumerate{% - \ifnum \@enumdepth >3 \@toodeep\else - \advance\@enumdepth \@ne - \edef\@enumctr{enum\romannumeral\the\@enumdepth}\fi - \@ifnextchar[{\@@enum@}{\@enum@}} -\def\@@enum@[#1]{% - \@enLab{}\let\@enThe\@enQmark - \@enloop#1\@enum@ - \ifx\@enThe\@enQmark\@warning{The counter will not be printed.% - ^^J\space\@spaces\@spaces\@spaces The label is: \the\@enLab}\fi - \expandafter\edef\csname label\@enumctr\endcsname{\the\@enLab}% - \expandafter\let\csname the\@enumctr\endcsname\@enThe - \csname c@\@enumctr\endcsname7 - \expandafter\settowidth - \csname leftmargin\romannumeral\@enumdepth\endcsname - {\the\@enLab\hskip\labelsep}% - \@enum@} -\def\@enum@{\list{{\@enfont\csname label\@enumctr\endcsname}}% - {\usecounter{\@enumctr}\def\makelabel##1{\hss\llap{##1}}% - \ifnum \@enumdepth>1\setlength{\topsep}{\@@sep}\else - \setlength{\topsep}{\@sep}\fi - \ifnum \@enumdepth>1\setlength{\itemsep}{0pt plus1pt minus1pt}% - \else \setlength{\itemsep}{\@@sep}\fi - %\setlength\leftmargin{\leftMargin}%%%{1.8em} - \setlength{\parsep}{0pt plus1pt minus1pt}% - \setlength{\parskip}{0pt plus1pt minus1pt} - }} - -\def\endenumerate{\par\ifnum \@enumdepth >1\addvspace{\@@sep}\else - \addvspace{\@sep}\fi \endlist} - -\def\sitem{\@noitemargtrue\@item[\@itemlabel *]} - -\def\itemize{\@ifnextchar[{\@Itemize}{\@Itemize[]}} - -\def\@Itemize[#1]{\def\next{#1}% - \ifnum \@itemdepth >\thr@@\@toodeep\else - \advance\@itemdepth\@ne - \ifx\next\@empty\else\expandafter\def\csname - labelitem\romannumeral\the\@itemdepth\endcsname{#1}\fi% - \edef\@itemitem{labelitem\romannumeral\the\@itemdepth}% - \expandafter\list\csname\@itemitem\endcsname - {\def\makelabel##1{\hss\llap{##1}}}% - \fi} -\def\newdefinition#1{% - \@ifnextchar[{\@odfn{#1}}{\@ndfn{#1}}}%] -\def\@ndfn#1#2{% - \@ifnextchar[{\@xndfn{#1}{#2}}{\@yndfn{#1}{#2}}} -\def\@xndfn#1#2[#3]{% - \expandafter\@ifdefinable\csname #1\endcsname - {\@definecounter{#1}\@newctr{#1}[#3]% - \expandafter\xdef\csname the#1\endcsname{% - \expandafter\noexpand\csname the#3\endcsname \@dfncountersep - \@dfncounter{#1}}% - \global\@namedef{#1}{\@dfn{#1}{#2}}% - \global\@namedef{end#1}{\@enddefinition}}} -\def\@yndfn#1#2{% - \expandafter\@ifdefinable\csname #1\endcsname - {\@definecounter{#1}% - \expandafter\xdef\csname the#1\endcsname{\@dfncounter{#1}}% - \global\@namedef{#1}{\@dfn{#1}{#2}}% - \global\@namedef{end#1}{\@enddefinition}}} -\def\@odfn#1[#2]#3{% - \@ifundefined{c@#2}{\@nocounterr{#2}}% - {\expandafter\@ifdefinable\csname #1\endcsname - {\global\@namedef{the#1}{\@nameuse{the#2}} - \global\@namedef{#1}{\@dfn{#2}{#3}}% - \global\@namedef{end#1}{\@enddefinition}}}} -\def\@dfn#1#2{% - \refstepcounter{#1}% - \@ifnextchar[{\@ydfn{#1}{#2}}{\@xdfn{#1}{#2}}} -\def\@xdfn#1#2{% - \@begindefinition{#2}{\csname the#1\endcsname}\ignorespaces} -\def\@ydfn#1#2[#3]{% - \@opargbegindefinition{#2}{\csname the#1\endcsname}{#3}\ignorespaces} -\def\@dfncounter#1{\noexpand\arabic{#1}} -\def\@dfncountersep{.} -\def\@begindefinition#1#2{\trivlist - \item[\hskip\labelsep{\bfseries #1\ #2.}]\upshape} -\def\@opargbegindefinition#1#2#3{\trivlist - \item[\hskip\labelsep{\bfseries #1\ #2\ (#3).}]\upshape} -\def\@enddefinition{\endtrivlist} - -\def\@begintheorem#1#2{\trivlist - \let\baselinestretch\@blstr - \item[\hskip \labelsep{\bfseries #1\ #2.}]\itshape} -\def\@opargbegintheorem#1#2#3{\trivlist - \let\baselinestretch\@blstr - \item[\hskip \labelsep{\bfseries #1\ #2\ (#3).}]\itshape} - -\def\newproof#1{% - \@ifnextchar[{\@oprf{#1}}{\@nprf{#1}}} -\def\@nprf#1#2{% - \@ifnextchar[{\@xnprf{#1}{#2}}{\@ynprf{#1}{#2}}} -\def\@xnprf#1#2[#3]{% - \expandafter\@ifdefinable\csname #1\endcsname - {\@definecounter{#1}\@newctr{#1}[#3]% - \expandafter\xdef\csname the#1\endcsname{% - \expandafter\noexpand\csname the#3\endcsname \@prfcountersep - \@prfcounter{#1}}% - \global\@namedef{#1}{\@prf{#1}{#2}}% - \global\@namedef{end#1}{\@endproof}}} -\def\@ynprf#1#2{% - \expandafter\@ifdefinable\csname #1\endcsname - {\@definecounter{#1}% - \expandafter\xdef\csname the#1\endcsname{\@prfcounter{#1}}% - \global\@namedef{#1}{\@prf{#1}{#2}}% - \global\@namedef{end#1}{\@endproof}}} -\def\@oprf#1[#2]#3{% - \@ifundefined{c@#2}{\@nocounterr{#2}}% - {\expandafter\@ifdefinable\csname #1\endcsname - {\global\@namedef{the#1}{\@nameuse{the#2}}% - \global\@namedef{#1}{\@prf{#2}{#3}}% - \global\@namedef{end#1}{\@endproof}}}} -\def\@prf#1#2{% - \refstepcounter{#1}% - \@ifnextchar[{\@yprf{#1}{#2}}{\@xprf{#1}{#2}}} -\def\@xprf#1#2{% - \@beginproof{#2}{\csname the#1\endcsname}\ignorespaces} -\def\@yprf#1#2[#3]{% - \@opargbeginproof{#2}{\csname the#1\endcsname}{#3}\ignorespaces} -\def\@prfcounter#1{\noexpand\arabic{#1}} -\def\@prfcountersep{.} -\def\@beginproof#1#2{\trivlist\let\baselinestretch\@blstr - \item[\hskip \labelsep{\scshape #1.}]\rmfamily} -\def\@opargbeginproof#1#2#3{\trivlist\let\baselinestretch\@blstr - \item[\hskip \labelsep{\scshape #1\ (#3).}]\rmfamily} -\def\@endproof{\endtrivlist} -\newcommand*{\qed}{\hbox{}\hfill$\Box$} - -\@ifundefined{@biboptions}{\xdef\@biboptions{numbers}}{} -\InputIfFileExists{\jobname.spl}{}{} -\ifnonatbib\relax\else - \RequirePackage[\@biboptions]{natbib} -\fi -\newwrite\splwrite -\immediate\openout\splwrite=\jobname.spl -\def\biboptions#1{\def\next{#1}\immediate\write\splwrite{% - \string\g@addto@macro\string\@biboptions{% - ,\expandafter\strip@prefix\meaning\next}}} - -\let\baselinestretch=\@blstr -\ifnum\jtype=1 - \RequirePackage{geometry} - \geometry{twoside, - paperwidth=210mm, - paperheight=297mm, - textheight=562pt, - textwidth=384pt, - centering, - headheight=50pt, - headsep=12pt, - footskip=12pt, - footnotesep=24pt plus 2pt minus 12pt, - } - \global\let\bibfont=\footnotesize - \global\bibsep=0pt - \if@twocolumn\global\@twocolumnfalse\fi -\else\ifnum\jtype=3 - \RequirePackage{geometry} - \geometry{twoside, - paperwidth=210mm, - paperheight=297mm, - textheight=622pt, - textwidth=468pt, - centering, - headheight=50pt, - headsep=12pt, - footskip=18pt, - footnotesep=24pt plus 2pt minus 12pt, - columnsep=2pc - } - \global\let\bibfont=\footnotesize - \global\bibsep=0pt - \if@twocolumn\input{fleqn.clo}\fi -\else\ifnum\jtype=5 - \RequirePackage{geometry} - \geometry{twoside, - paperwidth=210mm, - paperheight=297mm, - textheight=682pt, - textwidth=522pt, - centering, - headheight=50pt, - headsep=12pt, - footskip=18pt, - footnotesep=24pt plus 2pt minus 12pt, - columnsep=18pt - }% - \global\let\bibfont=\footnotesize - \global\bibsep=0pt - \input{fleqn.clo} - \global\@twocolumntrue -%% -%% End of option '5p' -%% -\fi\fi\fi -\def\journal#1{\gdef\@journal{#1}} - \let\@journal\@empty -\newenvironment{frontmatter}{}{\maketitle} - -\long\def\@makecaption#1#2{% - \vskip\abovecaptionskip\footnotesize - \sbox\@tempboxa{#1: #2}% - \ifdim \wd\@tempboxa >\hsize - #1: #2\par - \else - \global \@minipagefalse - \hb@xt@\hsize{\hfil\box\@tempboxa\hfil}% - \fi - \vskip\belowcaptionskip} - -\AtBeginDocument{\@ifpackageloaded{hyperref} - {\def\@linkcolor{blue} - \def\@anchorcolor{blue} - \def\@citecolor{blue} - \def\@filecolor{blue} - \def\@urlcolor{blue} - \def\@menucolor{blue} - \def\@pagecolor{blue} -\begingroup - \@makeother\`% - \@makeother\=% - \edef\x{% - \edef\noexpand\x{% - \endgroup - \noexpand\toks@{% - \catcode 96=\noexpand\the\catcode`\noexpand\`\relax - \catcode 61=\noexpand\the\catcode`\noexpand\=\relax - }% - }% - \noexpand\x - }% -\x -\@makeother\` -\@makeother\= -}{}} -%% -\def\appendixname{Appendix } -\renewcommand\appendix{\par - \setcounter{section}{0}% - \setcounter{subsection}{0}% - \setcounter{equation}{0} - \gdef\thefigure{\@Alph\c@section.\arabic{figure}}% - \gdef\thetable{\@Alph\c@section.\arabic{table}}% - \gdef\thesection{\appendixname~\@Alph\c@section}% - \@addtoreset{equation}{section}% - \gdef\theequation{\@Alph\c@section.\arabic{equation}}% - \addtocontents{toc}{\string\let\string\numberline\string\tmptocnumberline}{}{} -} - -%%%% \numberline width calculation for appendix. -\newdimen\appnamewidth -\def\tmptocnumberline#1{% - \setbox0=\hbox{\appendixname} - \appnamewidth=\wd0 - \addtolength\appnamewidth{2.5pc} - \hb@xt@\appnamewidth{#1\hfill} -} - -%% Added for work with amsrefs.sty - -\@ifpackageloaded{amsrefs}% - {} - {%\let\bibsection\relax% - \AtBeginDocument{\def\cites@b#1#2,#3{% - \begingroup[% - \toks@{\InnerCite{#2}#1}% - \ifx\@empty#3\@xp\@gobble\fi - \cites@c#3% -}}} -%% -%% Added for avoiding clash with cleveref.sty -\@ifpackageloaded{cleveref}% - {} - {\def\tnotetext[#1]#2{\g@addto@macro\@tnotes{% - \refstepcounter{tnote}% - \immediate\write\@auxout{\string\Newlabel{#1}{\thetnote}} - \def\thefootnote{\ifcase\c@tnote\or$\star$\or$\star\star$\fi}% - \footnotetext{#2}}} -%%% - \def\fntext[#1]#2{\g@addto@macro\@fnotes{% - \refstepcounter{fnote}% - \immediate\write\@auxout{\string\Newlabel{#1}{\thefnote}} - \def\thefootnote{\thefnote}% - \global\setcounter{footnote}{\c@fnote}% - \footnotetext{#2}}} -%%% - \def\cortext[#1]#2{\g@addto@macro\@cornotes{% - \refstepcounter{cnote}% - \immediate\write\@auxout{\string\Newlabel{#1}{\thecnote}} - \def\thefootnote{\ifcase\c@cnote\or$\ast$\or - $\ast\ast$\fi}% - \footnotetext{#2}}} -} - -\def\textmarker#1#2{\textcolor{#1}{#2}}%*% -\endinput -%% -%% End of file `supp.cls'. diff --git a/_extensions/inst/tex/supp.tex b/_extensions/inst/tex/supp.tex deleted file mode 100755 index 5ceb998..0000000 --- a/_extensions/inst/tex/supp.tex +++ /dev/null @@ -1,432 +0,0 @@ -$-- Keeping in template layout for backward compatibility -\documentclass[$if(layout)$$layout$$else$$for(classoption)$$classoption$$sep$,$endfor$$endif$]{_extensions/inst/tex/supp} %review=doublespace preprint=single 5p=2 column -%%% Begin My package additions %%%%%%%%%%%%%%%%%%% -\usepackage[hyphens]{url} -$if(journal)$ -\journal{$journal$} % Sets Journal name -$endif$ -\usepackage{lineno} % add -$if(linenumbers)$ -\linenumbers % turns line numbering on -$endif$ -\usepackage{graphicx} -\usepackage{xstring} -\usepackage{xcolor} -%%%%%%%%%%%%%%%% end my additions to header -\usepackage[T1]{fontenc} -\usepackage{lmodern} -\usepackage{amssymb,amsmath} -\usepackage{ifxetex,ifluatex} -\usepackage{fixltx2e} % provides \textsubscript -% use upquote if available, for straight quotes in verbatim environments -\IfFileExists{upquote.sty}{\usepackage{upquote}}{} -\ifnum 0\ifxetex 1\fi\ifluatex 1\fi=0 % if pdftex - \usepackage[utf8]{inputenc} - $if(euro)$ - \usepackage{eurosym} - $endif$ -\else % if luatex or xelatex - \usepackage{fontspec} - \ifxetex - \usepackage{xltxtra,xunicode} - \fi - \defaultfontfeatures{Mapping=tex-text,Scale=MatchLowercase} - \newcommand{\euro}{€} - $if(mainfont)$ - \setmainfont{$mainfont$} - $endif$ - $if(sansfont)$ - \setsansfont{$sansfont$} - $endif$ - $if(monofont)$ - \setmonofont{$monofont$} - $endif$ - $if(mathfont)$ - \setmathfont{$mathfont$} - $endif$ -\fi -% use microtype if available -\IfFileExists{microtype.sty}{\usepackage{microtype}}{} -$if(geometry)$ -\usepackage[$for(geometry)$$geometry$$sep$,$endfor$]{geometry} -$endif$ -$if(natbib)$ -\usepackage{natbib} -\setcitestyle{$natbiboptions$} -\bibliographystyle{$if(biblio-style)$$biblio-style$$else$plainnat$endif$} -$endif$ -$if(listings)$ -\usepackage{listings} -$endif$ -$if(lhs)$ -\lstnewenvironment{code}{\lstset{language=Haskell,basicstyle=\small\ttfamily}}{} -$endif$ -$if(verbatim-in-note)$ -\usepackage{fancyvrb} -$endif$ -$if(graphics)$ -\usepackage{graphicx} -$endif$ -\ifxetex - \usepackage[setpagesize=false, % page size defined by xetex - unicode=false, % unicode breaks when used with xetex - xetex]{hyperref} -\else - \usepackage[unicode=true]{hyperref} -\fi -\hypersetup{breaklinks=true, - bookmarks=true, - pdfauthor={$author-meta$}, - pdftitle={$title-meta$}, - colorlinks=$if(colorlinks)$true$else$false$endif$, - urlcolor=$if(urlcolor)$$urlcolor$$else$blue$endif$, - linkcolor=$if(linkcolor)$$linkcolor$$else$magenta$endif$, - pdfborder={0 0 0}} -\urlstyle{same} % don't use monospace font for urls -$if(links-as-notes)$ -% Make links footnotes instead of hotlinks: -\renewcommand{\href}[2]{#2\footnote{\url{#1}}} -$endif$ -$if(strikeout)$ -\usepackage[normalem]{ulem} -% avoid problems with \sout in headers with hyperref: -\pdfstringdefDisableCommands{\renewcommand{\sout}{}} -$endif$ -$if(numbersections)$ -\setcounter{secnumdepth}{5} -$else$ -\setcounter{secnumdepth}{0} -$endif$ -$if(verbatim-in-note)$ -\VerbatimFootnotes % allows verbatim text in footnotes -$endif$ -$if(lang)$ -\ifxetex - \usepackage{polyglossia} - \setmainlanguage{$mainlang$} -\else - \usepackage[$lang$]{babel} -\fi -$endif$ -% Pandoc toggle for numbering sections (defaults to be off) -$if(numbersections)$ -$else$ -\setcounter{secnumdepth}{0} -$endif$ -$if(highlighting-macros)$ -% Pandoc syntax highlighting -$highlighting-macros$ -$endif$ -% tightlist command for lists without linebreak -\providecommand{\tightlist}{% - \setlength{\itemsep}{0pt}\setlength{\parskip}{0pt}} -$if(tables)$ -% From pandoc table feature -\usepackage{longtable,booktabs,array} -$if(multirow)$ -\usepackage{multirow} -$endif$ -\usepackage{calc} % for calculating minipage widths -% Correct order of tables after \paragraph or \subparagraph -\usepackage{etoolbox} -\makeatletter -\patchcmd\longtable{\par}{\if@noskipsec\mbox{}\fi\par}{}{} -\makeatother -% Allow footnotes in longtable head/foot -\IfFileExists{footnotehyper.sty}{\usepackage{footnotehyper}}{\usepackage{footnote}} -\makesavenoteenv{longtable} -$endif$ -$if(csl-refs)$ -% Pandoc citation processing -\newlength{\cslhangindent} -\setlength{\cslhangindent}{1.5em} -\newlength{\csllabelwidth} -\setlength{\csllabelwidth}{3em} -\newlength{\cslentryspacingunit} % times entry-spacing -\setlength{\cslentryspacingunit}{\parskip} -% for Pandoc 2.8 to 2.10.1 -\newenvironment{cslreferences}% - {$if(csl-hanging-indent)$\setlength{\parindent}{0pt}% - \everypar{\setlength{\hangindent}{\cslhangindent}}\ignorespaces$endif$}% - {\par} -% For Pandoc 2.11+ -\newenvironment{CSLReferences}[2] % #1 hanging-ident, #2 entry spacing -{% don't indent paragraphs - \setlength{\parindent}{0pt} - % turn on hanging indent if param 1 is 1 - \ifodd #1 - \let\oldpar\par - \def\par{\hangindent=\cslhangindent\oldpar} - \fi - % set entry spacing - \setlength{\parskip}{#2\cslentryspacingunit} - }% -{} -\usepackage{calc} -\newcommand{\CSLBlock}[1]{#1\hfill\break} -\newcommand{\CSLLeftMargin}[1]{\parbox[t]{\csllabelwidth}{#1}} -\newcommand{\CSLRightInline}[1]{\parbox[t]{\linewidth - \csllabelwidth}{#1}\break} -\newcommand{\CSLIndent}[1]{\hspace{\cslhangindent}#1} -$endif$ -$for(header-includes)$ -$header-includes$ -$endfor$ - - -\usepackage{xifthen} -% set special color for EST -\ifthenelse{\equal{$journal$}{Environmental Science \& Technology}} -{\definecolor{seccol}{RGB}{56, 95, 66}} -{\definecolor{seccol}{RGB}{0, 0, 0}} - -$if(uppersections)$ -\usepackage{titlesec} -\titleformat{\section} -{\color{seccol}\large\bfseries\MakeUppercase}{\thesection}{1em}{} -$endif$ -$if(sectiononnewpage)$ -\AddToHook{cmd/section/before}{\clearpage} -$endif$ - -\usepackage{enumitem} -\usepackage{fontspec} -\usepackage{float} -\setmainfont{Helvetica} -\usepackage[normalem]{ulem} -\usepackage{hyperref} -\usepackage{nameref} %needed by zref-xr -\usepackage{zref-xr,zref-hyperref,zref-user} -\usepackage{xr-hyper} - -% force to use \zref -$if(msname)$ -\def\msname{$msname$} -\zexternaldocument*{\msname} -\renewcommand{\ref}{\zref} -$endif$ -$if(smname)$ -\def\smname{$smname$} -\zexternaldocument*{\smname} -$endif$ - -\zxrsetup{toltxlabel=true} -{\catcode`\#=12 \gdef\hashchar{#1}} -\makeatletter -\newcommand\hzref[1]{\edef\next{% - \noexpand\href{% - \zref@extractdefault{#1}{url}{}% - \zref@ifrefcontainsprop{#1}{anchor}{% - \hashchar\zref@extract{#1}{anchor}}{}}% - {\noexpand\zref{#1}}}\next} -\makeatother - - - -$if(revision)$ -% \usepackage{xcolor} -\usepackage{adjustbox} -\usepackage{mdframed} -\newmdenv[topline=false, - leftline=true, - bottomline=false, - rightline=false, - linewidth=3pt, - %backgroundcolor=lightgray, - linecolor=gray!30, - backgroundcolor=gray!5, - skipabove=\topsep, - skipbelow=\topsep, - leftmargin=0pt, - rightmargin=0pt, - innertopmargin=0pt, - innerbottommargin=0pt - ]{refquote} -\newmdenv[topline=false, - leftline=true, - bottomline=false, - rightline=false, - linewidth=3pt, - %backgroundcolor=lightgray, - backgroundcolor=red!3!white, - linecolor=red!30!white, - skipabove=\topsep, - skipbelow=\topsep, - leftmargin=0pt, - rightmargin=0pt, - innertopmargin=10pt, - innerbottommargin=10pt - ]{question} -\setenumerate{labelsep=*, leftmargin=1.0pc} -% setup hyperlink for page and line number -\def\msname{$if(msname)$$msname$$else$MS$endif$} -\def\smname{$if(smname)$$smname$$else$SM$endif$} -\setenumerate{labelsep=*, leftmargin=1.0pc} -%\zexternaldocument*{ManuscriptNew\veraa} -\zexternaldocument*{\msname} -\zexternaldocument*{\smname} -\newcommand{\hlabel}[1]{\label{#1}\hypertarget{#1}{ - \linelabel{line:#1}}} -%\externaldocument[si-]{\smname\veraa}[\smname\veraa.pdf] -\makeatletter - \newcommand{\clab}[2]{% - \protected@write\@auxout{\let\clab\@secondoftwo}{ - \string\newlabel{r:#1}{{#2}{}}}% - \hlabel{#1}#2\hlabel{#1end}} -\makeatother -\newcommand{\zhypera}[1]{\href[pdfnewwindow]{\msname.pdf\##1}{\\[1ex]\textbf{Page \zpageref{#1}, Line -\zref{line:#1}--\zref{line:#1end}:}\\}} -\newcommand{\cref}[1]{\begin{refquote}\zhypera{#1}{\zref{r:#1}}\\[-0.5ex]\end{refquote}} -% \newenvironment{ra}[1][\unskip]{\par \noindent \\[-1ex] \textbf{Response/Action:}\par\bf}{\ \\} -\renewenvironment{quote}{\begin{question}}{\end{question}} -% \renewenvironment{verbatim}{\begin{ra}}{\end{ra}} -$endif$ - - -% def default corresponding authors and equal contributing authors variables -\def\hascorr{0} -\def\haseqc{0} -% check if corresponding author(s) and equal contributing authors are available -$for(author)$$if(author.correspondence)$\def\hascorr{1}$endif$$if(author.equalcontribution)$\def\haseqc{1}$endif$ $endfor$ - -\newcommand{\getcorrauthinfo}{ - \subsection{Corresponding Author(s)} - \def\a{} \def\b{} \def\c{} - \hspace{-2.2em} - $for(author)$ - $if(author.correspondence)$ - \textbf{$author.name$:} - \vspace{-1em} - \begin{enumerate}[labelindent=-12pt,label=\arabic*.,itemindent=0em,leftmargin=!, itemsep = -10pt] - $for(author.institute)$ \def\a{$author.institute$} - $for(institute)$ \def\b{$institute.id$} \def\c{$institute.name$} - \ifx \a\b \item \c; \fi - $endfor$ - $endfor$ - $if(author.email)$\item email: $author.email$;$endif$ - $if(author.orcid)$\item orcid: $author.orcid$;$endif$ - $if(author.tel)$\item Tel: $author.tel$;$endif$ - $if(author.fax)$\item Fax: $author.fax$$endif$ - \end{enumerate} - $endif$ - $endfor$ -} - -\newcommand{\getotherauthinfo}{ - \subsection{Author(s)} - \def\a{} \def\b{} \def\c{} - \hspace{-2.2em} - $for(author)$ - $if(author.correspondence)$ - $else$ - \textbf{$author.name$:} - \vspace{-1em} - \begin{enumerate}[labelindent=-12pt,label=\arabic*.,itemindent=0em,leftmargin=!, itemsep = -10pt] - $for(author.institute)$ \def\a{$author.institute$} $for(institute)$ \def\b{$institute.id$} \def\c{$institute.name$} - \ifx \a\b \item \c; \fi - $endfor$ - $endfor$ - $if(author.email)$\item email: $author.email$;$endif$ - $if(author.orcid)$\item orcid: $author.orcid$;$endif$ - $if(author.tel)$\item Tel: $author.tel$;$endif$ - $if(author.fax)$\item Fax: $author.fax$$endif$ - \end{enumerate} - $endif$ - $endfor$ -} - -$preamble$ - -% remove the two line around Abstract -$if(abstract)$ -$else$ -\makeatletter -\renewcommand{\MaketitleBox}{% - \resetTitleCounters - \def\baselinestretch{1}% - \begin{center} - \def\baselinestretch{1}% - \large \@title \par - \vskip 18pt - \normalsize\elsauthors \par - \vskip 30pt - \footnotesize \itshape \elsaddress \par - \end{center} - \vskip 12pt -} -\makeatother -$endif$ - -\begin{document} -$for(include-before)$ -$include-before$ -$endfor$ -\begin{frontmatter} - - \title{$title$$if(subtitle)$\\\Large{$subtitle$}$endif$} - $for(author)$\author$if(authorwithinstitute)$[$for(author.institute)$$author.institute$$sep$,$endfor$]$endif${$author.name$$if(author.correspondence)$\corref{corrauth}$endif$$if(author.equalcontribution)$\corref{eqcon}$endif$ $if(author.footnote)$\fnref{$author.footnote$}$endif$}$if(author.email)$\ead{$author.email$}$endif$$endfor$ - $if(authorwithinstitute)$ $for(institute)$ \address[$institute.id$]{$institute.name$} $endfor$ $endif$ - % generate corresponding authors. - % \StrBehind is from xstring package - \ifnum \hascorr=1 - \def\corrauths{ - $for(author)$$if(author.correspondence)$and $author.name$ ($author.email$) $endif$$endfor$} - \cortext[corrauth]{Corresponding to \StrBehind*{\corrauths}{and }.} - \fi - - % generate equal contributing authors. - \ifnum \haseqc=1 - \def\eqa{$for(author)$$if(author.equalcontribution)$and $author.name$ $endif$$endfor$} - \cortext[eqcon]{\StrBehind*{\eqa}{and } are equally contributed to this work.} - \fi - - $for(footnote)$ - \fntext[$footnote.id$]{$footnote.text$} - $endfor$ - - $if(abstract)$ - \begin{abstract} - $abstract$ - \end{abstract} - $if(keywords)$ - \begin{keyword} - $for(keywords/allbutlast)$$keywords$ \sep $endfor$ - $for(keywords/last)$$keywords$$endfor$ - \end{keyword} - $endif$ - $endif$ -\end{frontmatter} - -$body$ - -$if(authorwithinstitute)$ -$else$ -\section{Author Information} - -\getcorrauthinfo{} - -\getotherauthinfo{} - -\section{Notes} - -The authors declare no competing financial interest. - -$endif$ - - -$if(natbib)$ -$if(bibliography)$ -$if(biblio-title)$ -$if(book-class)$ -\renewcommand\bibname{$biblio-title$} -$else$ -\renewcommand\refname{$biblio-title$} -$endif$ -$endif$ -\bibliography{$bibliography$} -$endif$ -$endif$ - -$for(include-after)$ -$include-after$ -$endfor$ -\end{document} diff --git a/_extensions/inst/tex/the-isme-j.csl b/_extensions/inst/tex/the-isme-j.csl deleted file mode 100755 index 730aefc..0000000 --- a/_extensions/inst/tex/the-isme-j.csl +++ /dev/null @@ -1,181 +0,0 @@ - - diff --git a/_extensions/inst/word/MS.docx b/_extensions/inst/word/MS.docx deleted file mode 100755 index 5b9ad12..0000000 Binary files a/_extensions/inst/word/MS.docx and /dev/null differ diff --git a/_extensions/inst/word/RN.docx b/_extensions/inst/word/RN.docx deleted file mode 100755 index a74403c..0000000 Binary files a/_extensions/inst/word/RN.docx and /dev/null differ diff --git a/_extensions/inst/word/cv.docx b/_extensions/inst/word/cv.docx deleted file mode 100755 index 3727b07..0000000 Binary files a/_extensions/inst/word/cv.docx and /dev/null differ diff --git a/_extensions/inst/word/manu.docx b/_extensions/inst/word/manu.docx deleted file mode 100755 index fedaf1e..0000000 Binary files a/_extensions/inst/word/manu.docx and /dev/null differ diff --git a/_extensions/inst/word/repcn.docx b/_extensions/inst/word/repcn.docx deleted file mode 100755 index 18580b1..0000000 Binary files a/_extensions/inst/word/repcn.docx and /dev/null differ diff --git a/_extensions/kapsner/authors-block/_extension.yml b/_extensions/kapsner/authors-block/_extension.yml deleted file mode 100644 index 194f33b..0000000 --- a/_extensions/kapsner/authors-block/_extension.yml +++ /dev/null @@ -1,13 +0,0 @@ -title: Authors-block -authors: - - name: Lorenz A. Kapsner - orcid: 0000-0003-1866-860X - - name: Albert Krewinkel - orcid: 0000-0002-9455-0796 - - name: Robert Winkler -version: 0.2.1 -quarto-required: ">=1.3.0" -contributes: - filters: - - authors-block.lua - diff --git a/_extensions/kapsner/authors-block/authors-block.lua b/_extensions/kapsner/authors-block/authors-block.lua deleted file mode 100644 index c7cc6c5..0000000 --- a/_extensions/kapsner/authors-block/authors-block.lua +++ /dev/null @@ -1,64 +0,0 @@ ---[[ -authors-block – affiliations block extension for quarto - -Copyright (c) 2023 Lorenz A. Kapsner - -Permission to use, copy, modify, and/or distribute this software for any purpose -with or without fee is hereby granted, provided that the above copyright notice -and this permission notice appear in all copies. - -THE SOFTWARE IS PROVIDED "AS IS" AND THE AUTHOR DISCLAIMS ALL WARRANTIES WITH -REGARD TO THIS SOFTWARE INCLUDING ALL IMPLIED WARRANTIES OF MERCHANTABILITY AND -FITNESS. IN NO EVENT SHALL THE AUTHOR BE LIABLE FOR ANY SPECIAL, DIRECT, -INDIRECT, OR CONSEQUENTIAL DAMAGES OR ANY DAMAGES WHATSOEVER RESULTING FROM LOSS -OF USE, DATA OR PROFITS, WHETHER IN AN ACTION OF CONTRACT, NEGLIGENCE OR OTHER -TORTIOUS ACTION, ARISING OUT OF OR IN CONNECTION WITH THE USE OR PERFORMANCE OF -THIS SOFTWARE. -]] - -local List = require 'pandoc.List' - --- [import] -local from_utils = require "utils" -local normalize_affiliations = from_utils.normalize_affiliations -local normalize_authors = from_utils.normalize_authors -local normalize_latex_authors = from_utils.normalize_latex_authors - -local from_authors = require "from_author_info_blocks" -local default_marks = from_authors.default_marks -local create_equal_contributors_block = from_authors.create_equal_contributors_block -local create_affiliations_blocks = from_authors.create_affiliations_blocks -local create_correspondence_blocks = from_authors.create_correspondence_blocks -local is_corresponding_author = from_authors.is_corresponding_author -local author_inline_generator = from_authors.author_inline_generator -local create_authors_inlines = from_authors.create_authors_inlines --- [/import] - --- This is the main-part -function Pandoc(doc) - local meta = doc.meta - local body = List:new{} - - local mark = function (mark_name) return default_marks[mark_name] end - - body:extend(create_equal_contributors_block(meta.authors, mark) or {}) - body:extend(create_affiliations_blocks(meta.affiliations) or {}) - body:extend(create_correspondence_blocks(meta.authors, mark) or {}) - body:extend(doc.blocks) - - for _i, author in ipairs(meta.authors) do - author.test = is_corresponding_author(author) - end - - meta.affiliations = normalize_affiliations(meta.affiliations) - meta.author = meta.authors:map(normalize_authors(meta.affiliations)) - - -- Overwrite authors with formatted values. We use a single, formatted - -- string for most formats. LaTeX output, however, looks nicer if we - -- provide a authors as a list. - meta.author = pandoc.MetaInlines(create_authors_inlines(meta.author, mark)) - -- Institute info is now baked into the affiliations block. - meta.affiliations = nil - - return pandoc.Pandoc(body, meta) -end diff --git a/_extensions/kapsner/authors-block/from_author_info_blocks.lua b/_extensions/kapsner/authors-block/from_author_info_blocks.lua deleted file mode 100644 index 1be9858..0000000 --- a/_extensions/kapsner/authors-block/from_author_info_blocks.lua +++ /dev/null @@ -1,193 +0,0 @@ --- https://github.com/pandoc/lua-filters/commit/ca72210b453cc0d045360e0ae36448d019d7dfbf ---[[ -affiliation-blocks – generate title components - -Copyright © 2017–2021 Albert Krewinkel - -Permission to use, copy, modify, and/or distribute this software for any purpose -with or without fee is hereby granted, provided that the above copyright notice -and this permission notice appear in all copies. - -THE SOFTWARE IS PROVIDED "AS IS" AND THE AUTHOR DISCLAIMS ALL WARRANTIES WITH -REGARD TO THIS SOFTWARE INCLUDING ALL IMPLIED WARRANTIES OF MERCHANTABILITY AND -FITNESS. IN NO EVENT SHALL THE AUTHOR BE LIABLE FOR ANY SPECIAL, DIRECT, -INDIRECT, OR CONSEQUENTIAL DAMAGES OR ANY DAMAGES WHATSOEVER RESULTING FROM LOSS -OF USE, DATA OR PROFITS, WHETHER IN AN ACTION OF CONTRACT, NEGLIGENCE OR OTHER -TORTIOUS ACTION, ARISING OUT OF OR IN CONNECTION WITH THE USE OR PERFORMANCE OF -THIS SOFTWARE. -]] - --- from @kapsner --- [import] -local from_utils = require("utils") -local has_key = from_utils.has_key --- [/import] -local M = {} - --- taken from https://github.com/pandoc/lua-filters/blob/1660794b991c3553968beb993f5aabb99b317584/author-info-blocks/author-info-blocks.lua -local List = require("pandoc.List") -local utils = require("pandoc.utils") -local stringify = utils.stringify - --- taken from https://github.com/pandoc/lua-filters/blob/1660794b991c3553968beb993f5aabb99b317584/author-info-blocks/author-info-blocks.lua -local default_marks -local default_marks = { - corresponding_author = FORMAT == "latex" and { pandoc.RawInline("latex", "*") } or { pandoc.Str("✉") }, - equal_contributor = FORMAT == "latex" and { pandoc.RawInline("latex", "†") } or { pandoc.Str("†") }, -} -M.default_marks = default_marks - --- modified by @kapsner --- taken from https://github.com/pandoc/lua-filters/blob/1660794b991c3553968beb993f5aabb99b317584/author-info-blocks/author-info-blocks.lua -local function is_equal_contributor(author) - if has_key(author, "attributes") then - return author.attributes["equal-contributor"] - end - return nil -end - --- taken from https://github.com/pandoc/lua-filters/blob/1660794b991c3553968beb993f5aabb99b317584/author-info-blocks/author-info-blocks.lua ---- Create equal contributors note. -local function create_equal_contributors_block(authors, mark) - local has_equal_contribs = List:new(authors):find_if(is_equal_contributor) - if not has_equal_contribs then - return nil - end - local contributors = { - pandoc.Superscript(mark("equal_contributor")), - pandoc.Space(), - pandoc.Str("These authors contributed equally to this work."), - } - return List:new({ pandoc.Para(contributors) }) -end -M.create_equal_contributors_block = create_equal_contributors_block - --- taken from https://github.com/pandoc/lua-filters/blob/1660794b991c3553968beb993f5aabb99b317584/author-info-blocks/author-info-blocks.lua -local function intercalate(lists, elem) - local result = List:new({}) - for i = 1, (#lists - 1) do - result:extend(lists[i]) - result:extend(elem) - end - if #lists > 0 then - result:extend(lists[#lists]) - end - return result -end - --- taken from https://github.com/pandoc/lua-filters/blob/1660794b991c3553968beb993f5aabb99b317584/author-info-blocks/author-info-blocks.lua ---- Check whether the given author is a corresponding author -local function is_corresponding_author(author) - if has_key(author, "attributes") then - if author.attributes["corresponding"] then - return author.email - end - end - return nil -end -M.is_corresponding_author = is_corresponding_author - --- taken from https://github.com/pandoc/lua-filters/blob/1660794b991c3553968beb993f5aabb99b317584/author-info-blocks/author-info-blocks.lua ---- Generate a block element containing the correspondence information -local function create_correspondence_blocks(authors, mark) - local corresponding_authors = List:new({}) - for _, author in ipairs(authors) do - if is_corresponding_author(author) then - local mailto = "mailto:" .. utils.stringify(author.email) - local author_with_mail = List:new( - -- modified by @kapsner - author.name.literal - .. List:new({ pandoc.Space(), pandoc.Str("<") }) - .. author.email - .. List:new({ pandoc.Str(">") }) - ) - local link = pandoc.Link(author_with_mail, mailto) - table.insert(corresponding_authors, { link }) - end - end - if #corresponding_authors == 0 then - return nil - end - local correspondence = List:new({ - pandoc.Superscript(mark("corresponding_author")), - pandoc.Space(), - pandoc.Str("Correspondence:"), - pandoc.Space(), - }) - local sep = List:new({ pandoc.Str(","), pandoc.Space() }) - return { - pandoc.Para(correspondence .. intercalate(corresponding_authors, sep)), - } -end -M.create_correspondence_blocks = create_correspondence_blocks - --- taken from https://github.com/pandoc/lua-filters/blob/1660794b991c3553968beb993f5aabb99b317584/author-info-blocks/author-info-blocks.lua ---- Create inlines for a single author (includes all author notes) -local function author_inline_generator(get_mark) - return function(author) - local author_marks = List:new({}) - -- modified by @kapsner - if has_key(author, "attributes") then - if author.attributes["equal-contributor"] then - author_marks[#author_marks + 1] = get_mark("equal_contributor") - end - end - local idx_str - for _, idx in ipairs(author.affiliations) do - if type(idx) ~= "table" then - idx_str = tostring(idx) - else - idx_str = stringify(idx) - end - author_marks[#author_marks + 1] = { pandoc.Str(idx_str) } - end - if is_corresponding_author(author) then - author_marks[#author_marks + 1] = get_mark("corresponding_author") - end - -- modified by @kapsner - if FORMAT:match("latex") then - author.name.literal[#author.name.literal + 1] = - pandoc.Superscript(intercalate(author_marks, { pandoc.Str(",") })) - return author - else - local res = List.clone(author.name.literal) - res[#res + 1] = pandoc.Superscript(intercalate(author_marks, { pandoc.Str(",") })) - return res - end - end -end -M.author_inline_generator = author_inline_generator - --- taken from https://github.com/pandoc/lua-filters/blob/1660794b991c3553968beb993f5aabb99b317584/author-info-blocks/author-info-blocks.lua ---- Generate a list of inlines containing all authors. -local function create_authors_inlines(authors, mark) - local inlines_generator = author_inline_generator(mark) - local inlines = List:new(authors):map(inlines_generator) - local and_str = List:new({ pandoc.Space(), pandoc.Str("and"), pandoc.Space() }) - - local last_author = inlines[#inlines] - inlines[#inlines] = nil - local result = intercalate(inlines, { pandoc.Str(","), pandoc.Space() }) - if #authors > 1 then - result:extend(List:new({ pandoc.Str(",") }) .. and_str) - end - result:extend(last_author) - return result -end -M.create_authors_inlines = create_authors_inlines - --- taken from https://github.com/pandoc/lua-filters/blob/1660794b991c3553968beb993f5aabb99b317584/author-info-blocks/author-info-blocks.lua ---- Generate a block list all affiliations, marked with arabic numbers. -local function create_affiliations_blocks(affiliations) - local affil_lines = List:new(affiliations):map(function(affil, i) - local num_inlines = List:new({ - pandoc.Superscript({ pandoc.Str(affil.number) }), - pandoc.Space(), - }) - return num_inlines .. affil.name - end) - return { pandoc.Para(intercalate(affil_lines, { pandoc.LineBreak() })) } -end -M.create_affiliations_blocks = create_affiliations_blocks - -return M diff --git a/_extensions/kapsner/authors-block/from_scholarly_metadata.lua b/_extensions/kapsner/authors-block/from_scholarly_metadata.lua deleted file mode 100644 index 0ff7e81..0000000 --- a/_extensions/kapsner/authors-block/from_scholarly_metadata.lua +++ /dev/null @@ -1,59 +0,0 @@ ---[[ -ScholarlyMeta – normalize author/affiliation meta variables - -Copyright (c) 2017-2021 Albert Krewinkel, Robert Winkler - -Permission to use, copy, modify, and/or distribute this software for any purpose -with or without fee is hereby granted, provided that the above copyright notice -and this permission notice appear in all copies. - -THE SOFTWARE IS PROVIDED "AS IS" AND THE AUTHOR DISCLAIMS ALL WARRANTIES WITH -REGARD TO THIS SOFTWARE INCLUDING ALL IMPLIED WARRANTIES OF MERCHANTABILITY AND -FITNESS. IN NO EVENT SHALL THE AUTHOR BE LIABLE FOR ANY SPECIAL, DIRECT, -INDIRECT, OR CONSEQUENTIAL DAMAGES OR ANY DAMAGES WHATSOEVER RESULTING FROM LOSS -OF USE, DATA OR PROFITS, WHETHER IN AN ACTION OF CONTRACT, NEGLIGENCE OR OTHER -TORTIOUS ACTION, ARISING OUT OF OR IN CONNECTION WITH THE USE OR PERFORMANCE OF -THIS SOFTWARE. -]] - -local List = require 'pandoc.List' -local utils = require 'pandoc.utils' -local stringify = utils.stringify - -local M = {} - - --- taken from https://github.com/pandoc/lua-filters/blob/1660794b991c3553968beb993f5aabb99b317584/scholarly-metadata/scholarly-metadata.lua ---- Returns a function which checks whether an object has the given ID. -local function has_id(id) - return function(x) return x.id == id end -end - - --- taken from https://github.com/pandoc/lua-filters/blob/1660794b991c3553968beb993f5aabb99b317584/scholarly-metadata/scholarly-metadata.lua ---- Resolve institute placeholders to full named objects -local function resolve_institutes(institute, known_institutes) - local unresolved_institutes - if institute == nil then - unresolved_institutes = {} - elseif type(institute) == "string" or type(institute) == "number" then - unresolved_institutes = {institute} - else - unresolved_institutes = institute - end - - local result = List:new{} - for i, inst in ipairs(unresolved_institutes) do - -- this has been modified by @kapsner - --result[i] = - -- known_institutes[tonumber(inst)] or - -- known_institutes:find_if(has_id(pandoc.utils.stringify(inst))) or - -- to_named_object(inst) - intermed_val = known_institutes:find_if(has_id(stringify(inst))) - result[i] = pandoc.MetaString(stringify(intermed_val.index)) - end - return result -end -M.resolve_institutes = resolve_institutes - -return M \ No newline at end of file diff --git a/_extensions/kapsner/authors-block/utils.lua b/_extensions/kapsner/authors-block/utils.lua deleted file mode 100644 index d0103ca..0000000 --- a/_extensions/kapsner/authors-block/utils.lua +++ /dev/null @@ -1,62 +0,0 @@ ---[[ -authors-block – affiliations block extension for quarto - -Copyright (c) 2023 Lorenz A. Kapsner - -Permission to use, copy, modify, and/or distribute this software for any purpose -with or without fee is hereby granted, provided that the above copyright notice -and this permission notice appear in all copies. - -THE SOFTWARE IS PROVIDED "AS IS" AND THE AUTHOR DISCLAIMS ALL WARRANTIES WITH -REGARD TO THIS SOFTWARE INCLUDING ALL IMPLIED WARRANTIES OF MERCHANTABILITY AND -FITNESS. IN NO EVENT SHALL THE AUTHOR BE LIABLE FOR ANY SPECIAL, DIRECT, -INDIRECT, OR CONSEQUENTIAL DAMAGES OR ANY DAMAGES WHATSOEVER RESULTING FROM LOSS -OF USE, DATA OR PROFITS, WHETHER IN AN ACTION OF CONTRACT, NEGLIGENCE OR OTHER -TORTIOUS ACTION, ARISING OUT OF OR IN CONNECTION WITH THE USE OR PERFORMANCE OF -THIS SOFTWARE. -]] - -local List = require 'pandoc.List' -local utils = require 'pandoc.utils' -local stringify = utils.stringify - --- [import] -local from_scholarly = require "from_scholarly_metadata" -local resolve_institutes = from_scholarly.resolve_institutes --- [/import] - -local M = {} - --- from @kapsner -local function normalize_affiliations(affiliations) - local affiliations_norm = List:new(affiliations):map( - function(affil, i) - affil.index = pandoc.MetaInlines(pandoc.Str(tostring(i))) - affil.id = pandoc.MetaString(stringify(affil.id)) - return affil - end - ) - return affiliations_norm -end -M.normalize_affiliations = normalize_affiliations - --- from https://stackoverflow.com/a/2282547 -local function has_key(set, key) - return set[key] ~= nil -end -M.has_key = has_key - --- from @kapsner -local function normalize_authors(affiliations) - return function(auth) - auth.id = pandoc.MetaString(stringify(auth.name)) - auth.affiliations = resolve_institutes( - auth.affiliations, - affiliations - ) - return auth - end -end -M.normalize_authors = normalize_authors - -return M diff --git a/_extensions/pandoc-ext/author-info-blocks/_extension.yaml b/_extensions/pandoc-ext/author-info-blocks/_extension.yaml deleted file mode 100755 index 7eb8425..0000000 --- a/_extensions/pandoc-ext/author-info-blocks/_extension.yaml +++ /dev/null @@ -1,6 +0,0 @@ -name: author-info-blocks -author: Albert Krewinkel -version: 1.0.0 -contributes: - filters: - - author-info-blocks.lua diff --git a/_extensions/pandoc-ext/author-info-blocks/author-info-blocks.lua b/_extensions/pandoc-ext/author-info-blocks/author-info-blocks.lua deleted file mode 100755 index fb269ef..0000000 --- a/_extensions/pandoc-ext/author-info-blocks/author-info-blocks.lua +++ /dev/null @@ -1,179 +0,0 @@ -local List = require("pandoc.List") -local utils = require("pandoc.utils") -local stringify = utils.stringify -local byAuthor -local byAffiliation -local Authors = {} -local Affiliations = {} - -local authorHoriz - -local Corresponding = nil -local function make_correspondance(name, email) - correspondance = List:new({ - pandoc.Str("* Corresponding Author: "), - pandoc.Str(name), - pandoc.Str(" ("), - pandoc.Link(email, "mailto:" .. email), - pandoc.Str(")"), - }) - Corresponding = List:new({ pandoc.Para(correspondance) }) -end - -local equalCont -local function make_equal_contributor() - eq_statement = pandoc.Str("† These authors contributed equally to this work.") - equalCont = List:new({ pandoc.Para(eq_statement) }) -end - -local function create_author_list(byAuthor) - local authors = {} - for i, author in ipairs(byAuthor) do - local sups = {} - - for j, aff in ipairs(author.affiliations) do - table.insert(sups, aff.number) - end - sups_str = table.concat(sups, ",") - - local name = stringify(author.name.literal) - - if author.attributes ~= nil then - if author.attributes["equal-contributor"] ~= nil and author.attributes["equal-contributor"] then - sups_str = sups_str .. ",†" - make_equal_contributor() - end - if author.attributes.corresponding ~= nil and author.attributes.corresponding then - local email = stringify(author.email) - sups_str = sups_str .. ",*" - make_correspondance(name, email) - end - end - - local authorEntry = List:new({ - pandoc.Str(name), - pandoc.Superscript(pandoc.Str(sups_str)), - }) - - if authorHoriz and i < #byAuthor then - authorEntry:extend({ pandoc.Str(", ") }) - end - - table.insert(authors, pandoc.Span(authorEntry)) - end - - if authorHoriz then - Authors = { pandoc.Para(authors) } - else - Authors = authors - end -end - -local function create_affiliation_list(byAffiliation) - for i, aff in ipairs(byAffiliation) do - local full_aff = pandoc.List({}) - if aff.name then - full_aff:insert(stringify(aff.name)) - end - - if aff.address then - full_aff:insert(stringify(aff.address)) - end - - if aff.city then - full_aff:insert(stringify(aff.city)) - end - - if aff["postal-code"] then - full_aff:insert(stringify(aff["postal-code"])) - end - - if aff.region then - full_aff:insert(stringify(aff.region)) - end - - if aff.country then - full_aff:insert(stringify(aff.country)) - end - - local entry = table.concat(full_aff, ", ") - entry = aff.number .. ". " .. entry .. "." - table.insert(Affiliations, pandoc.Para(pandoc.Str(entry))) - end -end - -local Abstract = nil -local function create_abstract(ab) - Abstract = {} - table.insert(Abstract, pandoc.Header(1, "Abstract")) - table.insert(Abstract, pandoc.Para(ab)) -end - -local Keywords = nil -local function create_keyword_list(kw) - Keywords = {} - -- quarto.log.output(kw) - local kws = pandoc.List({}) - for i, keyword in ipairs(kw) do - kws:insert(stringify(keyword)) - end - local kwentry = table.concat(kws, "; ") - kwentry = "Keywords: " .. kwentry .. "." - table.insert(Keywords, pandoc.Para(pandoc.Str(kwentry))) -end - -local function remove_author_meta(meta) - meta.author = nil - meta.authors = nil - meta.affiliations = nil - meta["by-author"] = nil - meta["by-affiliation"] = nil - meta["abstract"] = nil - return meta -end - -return { - { - Meta = function(meta) - byAuthor = meta["by-author"] - byAffiliation = meta["by-affiliation"] - if meta["author-horizontal"] ~= nil then - authorHoriz = meta["author-horizontal"] - else - authorHoriz = true - end - create_author_list(byAuthor) - create_affiliation_list(byAffiliation) - if meta["abstract"] ~= nil then - create_abstract(meta["abstract"]) - end - if meta["keywords"] ~= nil then - create_keyword_list(meta["keywords"]) - end - return meta - end, - }, - { - Pandoc = function(doc) - local meta = doc.meta - local body = List:new({}) - body:extend(Authors) - body:extend(Affiliations) - if equalCont ~= nil then - body:extend(equalCont) - end - if Corresponding ~= nil then - body:extend(Corresponding) - end - if Abstract then - body:extend(Abstract) - end - if Keywords then - body:extend(Keywords) - end - body:extend(doc.blocks) - meta = remove_author_meta(meta) - return pandoc.Pandoc(body, meta) - end, - }, -} diff --git a/_quarto.yml b/_quarto.yml index a7a32a2..3896d92 100644 --- a/_quarto.yml +++ b/_quarto.yml @@ -4,6 +4,7 @@ submitid: lang: en date: last-modified # bibliography: [BB/Ref.bib, BB/localRef.bib] +affilstyle: alphabeta # number author: - name: Xxxxx Yyyy affiliations: @@ -11,6 +12,7 @@ author: # email: 13586740928@163.com attributes: corresponding: false + equal-contributor: true role: - data-curation: lead - methodology: lead @@ -36,7 +38,7 @@ author: - ref: ucas attributes: corresponding: true - # equal-contributor: true + equal-contributor: true - name: Min Yang email: yangmin@rcees.ac.cn affiliations: @@ -47,14 +49,17 @@ author: affiliations: - id: kleac name: State Key Laboratory of Environmental Aquatic Chemistry, Research Center for Eco-Environmental Sciences, Chinese Academy of Sciences - address: P.O. Box 2871 + # address: No. 18 Shuangqing Road city: Beijing postal-code: 100085 + country: China url: https://www.skleac.ac.cn - id: ucas name: University of Chinese Academy of Sciences + # address: No. 19A Yuquan Road city: Beijing postal-code: 100049 + country: China url: https://www.ucas.ac.cn crossref: fig-title: Fig. # (default is "Figure") @@ -129,11 +134,12 @@ project: - MS/MS.qmd - MS/CL.qmd - MS/HL.qmd + - MS/RP.qmd - TC/index.qmd - SD/ # - MS/RN.qmd # - MS/AC.qmd - # - RP/ + - RP/ website: title: "Version: {{< var branch >}}" reader-mode: true @@ -168,6 +174,8 @@ website: file: MS/HL.qmd - text: "Cover Letter" file: MS/CL.qmd + - text: "Reports" + file: RP/index.qmd # - text: "Author Credits" # file: MS/AC.qmd - text: "Accomplishment" @@ -184,7 +192,4 @@ website: openSidebar: false format: - html: - theme: cosmo - css: _extensions/inst/css/style.css - toc: true + dwhm-html: default