update extensions

AC/_extensions

@@ -0,0 +1 @@
+../_extensions

RP/_extensions

@@ -0,0 +1 @@
+../_extensions

RP/index.qmd

@@ -14,7 +14,7 @@ rmdify::rmd_init()
 
 ```{r}
 #| output: asis
-data.frame(fd = dir(".", pattern = "[-_]")) |>
+data.frame(fd = dir(".", pattern = ".[-_]")) |>
   dplyr::filter(!grepl("_files", fd)) |>
   dplyr::filter(!grepl("quarto", fd)) |>
   dplyr::mutate(

SD/_extensions

@@ -0,0 +1 @@
+../_extensions

SD/index.qmd

@@ -11,7 +11,7 @@ rmdify::rmd_init()
 
 ```{r}
 #| output: asis
-data.frame(fd = dir(".", pattern = "[-_]")) |>
+data.frame(fd = dir(".", pattern = ".[-_]")) |>
   dplyr::mutate(
     fn = purrr::map_chr(
       fd,

TC/_extensions

@@ -0,0 +1 @@
+../_extensions

_brand.yml

@@ -1,16 +0,0 @@
-color:
-  palette:
-    dark-grey: "#ff0000"
-    blue: "#ddeaf1"
-  background: blue
-  foreground: dark-grey
-  primary: black
-
-logo:
-  medium: ./_extensions/drwater/dwinst/drwater-white0.svg
-# typography:
-#   fonts:
-#     - family: Jura
-#       source: google
-#   base: Jura
-#   headings: Jura

_quarto.yml

@@ -157,13 +157,13 @@ website:
         text: "Home"
         file: index.qmd
       - text: "Main files"
-        menu: 
+        menu:
           - text: "Manuscript"
             file: MS/MS.qmd
           - text: "Supplementary Materials"
             file: MS/SM.qmd
-        # - text: "Revision Notes"
+          # - text: "Revision Notes"
-        #   file: MS/RN.qmd
+          #   file: MS/RN.qmd
           - text: "Cover Letter"
             file: MS/CL.qmd
           - text: "Highlights"