update template

This commit is contained in:
2024-08-25 21:35:42 +08:00
parent 6e7e207274
commit 8882726770
15 changed files with 464 additions and 130 deletions
+17
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@@ -0,0 +1,17 @@
\relax
\providecommand\babel@aux[2]{}
\@nameuse{bbl@beforestart}
\providecommand\hyper@newdestlabel[2]{}
\providecommand*\HyPL@Entry[1]{}
\bibstyle{elsarticle-harv}
\emailauthor{mingsu@rcees.ac.cn}{Ming Su}
\emailauthor{yangmin@rcees.ac.cn}{Min Yang\corref {cor1}}
\Newlabel{cor1}{1}
\bibdata{../BB/Ref.bib,../BB/localRef.bib}
\HyPL@Entry{0<</S/D>>}
\babel@aux{english}{}
\Newlabel{1}{a}
\Newlabel{2}{b}
\newlabel{credit-authorship-contribution-statement}{{b}{1}{CRediT authorship contribution statement}{section*.1}{}}
\@writefile{toc}{\contentsline {section}{CRediT authorship contribution statement}{1}{section*.1}\protected@file@percent }
\gdef \@abspage@last{1}
+1 -1
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@@ -28,6 +28,6 @@ closing_greeting: "Yours Sincerely,"
Thank you for your consideration our manuscript (`{{< meta submitid >}}`) in publishing in {{< meta submitjournal >}}, and we also thank the reviewers for their kind and valuable comments.
We have carefully revised the manuscripte according to each comment from the reviewers. As requested, revision note with point to point responses and actions, change tracking manuscript and revised manuscript have been prepared and included in the revision submission.
We have carefully revised the manuscript according to each comment from the reviewers. As requested, revision note with point to point responses and actions, change tracking manuscript and revised manuscript have been prepared and included in the revision submission.
We believe that the paper has been greatly improved. Looking forward to your further instruction regarding its publication.
+33
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@@ -0,0 +1,33 @@
\relax
\providecommand\zref@newlabel[2]{}
\providecommand\hyper@newdestlabel[2]{}
\providecommand*\HyPL@Entry[1]{}
\providecommand\babel@aux[2]{}
\@nameuse{bbl@beforestart}
\bibstyle{elsarticle-harv}
\emailauthor{mingsu@rcees.ac.cn}{Ming Su}
\emailauthor{yangmin@rcees.ac.cn}{Min Yang\corref {cor1}}
\Newlabel{cor1}{1}
\bibdata{../BB/Ref.bib,../BB/localRef.bib}
\HyPL@Entry{0<</S/D>>}
\babel@aux{english}{}
\Newlabel{1}{a}
\Newlabel{2}{b}
\@writefile{toc}{\contentsline {section}{\numberline {1}Introduction}{1}{section.1}\protected@file@percent }
\newlabel{introduction}{{1}{1}{Introduction}{section.1}{}}
\newlabel{r:r1q0101}{{Bla blaBla blaBla blaBla blaBla bla Bla bla.}{}}
\newlabel{r1q0101}{{1}{1}{Introduction}{section.1}{}}
\newlabel{r1q0101end}{{1}{1}{Introduction}{section.1}{}}
\newlabel{line:r1q0101}{{6}{1}{}{}{}}
\newlabel{line:r1q0101end}{{6}{1}{}{}{}}
\@writefile{toc}{\contentsline {section}{\numberline {2}Materials and methods}{1}{section.2}\protected@file@percent }
\newlabel{materials-and-methods}{{2}{1}{Materials and methods}{section.2}{}}
\@writefile{toc}{\contentsline {section}{\numberline {3}Results}{1}{section.3}\protected@file@percent }
\newlabel{results}{{3}{1}{Results}{section.3}{}}
\@writefile{toc}{\contentsline {section}{\numberline {4}Discussion}{1}{section.4}\protected@file@percent }
\newlabel{discussion}{{4}{1}{Discussion}{section.4}{}}
\@writefile{toc}{\contentsline {section}{\numberline {5}Conclusions}{1}{section.5}\protected@file@percent }
\newlabel{conclusions}{{5}{1}{Conclusions}{section.5}{}}
\newlabel{acknowledgements}{{5}{1}{Acknowledgements}{section*.1}{}}
\@writefile{toc}{\contentsline {section}{Acknowledgements}{1}{section*.1}\protected@file@percent }
\gdef \@abspage@last{1}
+38 -30
View File
@@ -14,41 +14,41 @@ format:
elsevier-html:
css: _extensions/inst/css/style.css
keep-md: true
filters:
dplyr::filters:
- author-info-blocks
epub: default
docx:
reference-doc: _extensions/inst/word/MS.docx
filters:
dplyr::filters:
- author-info-blocks
elsevier-pdf:
keep-tex: true
keep-md: true
include-in-header: "./_extensions/quarto-journals/elsevier/partials/revision.tex"
latex-clean: false
header-includes:
# - \usepackage{threeparttable}
# - \usepackage{fontspec}
# - \usepackage{endfloat}
- \setmainfont{Calibri}
# - \usepackage[UTF8, scheme=plain]{ctex}
# - \usepackage{float}
- \usepackage[normalem]{ulem}
- \usepackage[doublespacing]{setspace}
- \usepackage{lineno}
- \linenumbers
journal:
formatting: preprint # preprint | review | doublebind
model: 1p
cite-style: authoryear
# graphical-abstract: "![](./figures/GA3.pdf)"
# highlights:
# - A comprehensive model was contructed to evaluate the risk of odor occurrences
# - Turbidity distribution determine underwater light and MIB-producing *Planktothrix*
# - Increasing flowrate increases turbidity that can control *Planktothrix* and MIB
# - Odor control based on flow regulation in source water is "green" and fundamental
filters:
- latex-environment
# elsevier-pdf:
# keep-tex: false
# keep-md: false
# include-in-header: "./_extensions/quarto-journals/elsevier/partials/revision.tex"
# latex-clean: false
# header-includes:
# # - \usepackage{threeparttable}
# # - \usepackage{fontspec}
# # - \usepackage{endfloat}
# - \setmainfont{Calibri}
# - \usepackage[UTF8, scheme=plain]{ctex}
# - \usepackage{float}
# - \usepackage[normalem]{ulem}
# - \usepackage[doublespacing]{setspace}
# - \usepackage{lineno}
# - \linenumbers
# journal:
# formatting: preprint # preprint | review | doublebind
# model: 1p
# cite-style: authoryear
# # graphical-abstract: "![](../figures/GA3.pdf)"
# # highlights:
# # - A comprehensive model was contructed to evaluate the risk of odor occurrences
# # - Turbidity distribution determine underwater light and MIB-producing *Planktothrix*
# # - Increasing flowrate increases turbidity that can control *Planktothrix* and MIB
# # - Odor control based on flow regulation in source water is "green" and fundamental
# filters:
# - latex-environment
commands: [clab]
---
@@ -57,6 +57,10 @@ commands: [clab]
::: {.content-visible when-format="html"}
# Color tip {.unnumbered}
@@ -81,6 +85,10 @@ commands: [clab]
# Introduction
Blabla. [Bla blaBla blaBla blaBla blaBla bla Bla bla.]{.clab options=r1q0101}
+34 -39
View File
@@ -14,44 +14,45 @@ format:
elsevier-html:
css: _extensions/inst/css/style.css
keep-md: true
filters:
dplyr::filters:
- author-info-blocks
epub: default
docx:
reference-doc: _extensions/inst/word/MS.docx
filters:
dplyr::filters:
- author-info-blocks
elsevier-pdf:
keep-tex: true
keep-md: true
include-in-header: "./_extensions/quarto-journals/elsevier/partials/revision.tex"
latex-clean: false
header-includes:
# - \usepackage{threeparttable}
# - \usepackage{fontspec}
# - \usepackage{endfloat}
- \setmainfont{Calibri}
# - \usepackage[UTF8, scheme=plain]{ctex}
# - \usepackage{float}
- \usepackage[normalem]{ulem}
- \usepackage[doublespacing]{setspace}
- \usepackage{lineno}
- \linenumbers
journal:
formatting: preprint # preprint | review | doublebind
model: 1p
cite-style: authoryear
# graphical-abstract: "![](./figures/GA3.pdf)"
# highlights:
# - A comprehensive model was contructed to evaluate the risk of odor occurrences
# - Turbidity distribution determine underwater light and MIB-producing *Planktothrix*
# - Increasing flowrate increases turbidity that can control *Planktothrix* and MIB
# - Odor control based on flow regulation in source water is "green" and fundamental
filters:
- latex-environment
# elsevier-pdf:
# keep-tex: false
# keep-md: false
# include-in-header: "./_extensions/quarto-journals/elsevier/partials/revision.tex"
# latex-clean: false
# header-includes:
# # - \usepackage{threeparttable}
# # - \usepackage{fontspec}
# # - \usepackage{endfloat}
# - \setmainfont{Calibri}
# - \usepackage[UTF8, scheme=plain]{ctex}
# - \usepackage{float}
# - \usepackage[normalem]{ulem}
# - \usepackage[doublespacing]{setspace}
# - \usepackage{lineno}
# - \linenumbers
# journal:
# formatting: preprint # preprint | review | doublebind
# model: 1p
# cite-style: authoryear
# # graphical-abstract: "![](../figures/GA3.pdf)"
# # highlights:
# # - A comprehensive model was contructed to evaluate the risk of odor occurrences
# # - Turbidity distribution determine underwater light and MIB-producing *Planktothrix*
# # - Increasing flowrate increases turbidity that can control *Planktothrix* and MIB
# # - Odor control based on flow regulation in source water is "green" and fundamental
# filters:
# - latex-environment
commands: [clab]
---
::: {.content-visible when-format="html"}
# Color tip {.unnumbered}
@@ -72,20 +73,14 @@ lang <- "en"
RM <- "F" # global rendermode, L: load pdata; F: fast load pdf # nolint
isRendering <- isTRUE(getOption("knitr.in.progress"))
require(tidyverse)
require(drwateR)
require(rmdify)
rmdify::rmd_init()
require(dateR)
require(uniteR)
require(langeR)
require(patchwork)
require(lubridate)
require(patchwork)
require(drwateR)
rmdify::rmd_init()
biburl <- "http://drwater.rcees.ac.cn/cloud/s/ref_ming/download/Ref.bib"
if (!isRendering) { download.file(biburl, destfile = "Ref.bib") }
```
# Introduction
Blabla. [Bla blaBla blaBla blaBla blaBla bla Bla bla.]{.clab options=r1q0101}
+18
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@@ -0,0 +1,18 @@
\relax
\providecommand\zref@newlabel[2]{}
\providecommand\hyper@newdestlabel[2]{}
\providecommand*\HyPL@Entry[1]{}
\providecommand\babel@aux[2]{}
\@nameuse{bbl@beforestart}
\bibstyle{elsarticle-num}
\emailauthor{mingsu@rcees.ac.cn}{Ming Su}
\emailauthor{yangmin@rcees.ac.cn}{Min Yang\corref {cor1}}
\Newlabel{cor1}{1}
\HyPL@Entry{0<</S/D>>}
\babel@aux{english}{}
\Newlabel{1}{a}
\Newlabel{2}{b}
\newlabel{supplementary-material}{{b}{1}{Supplementary Material}{section*.1}{}}
\@writefile{toc}{\contentsline {section}{Supplementary Material}{1}{section*.1}\protected@file@percent }
\bibdata{../BB/Ref.bib,../BB/localRef.bib}
\gdef \@abspage@last{2}
+5 -10
View File
@@ -38,25 +38,20 @@ filters:
commands: [clab]
---
```{r}
#| label: setup
#| include: false
#| cache: false
options(tinytex.clean = FALSE)
lang <- "en"
RM <- "F" # global rendermode, L: load pdata; F: fast load pdf
isRendering <- isTRUE(getOption('knitr.in.progress'))
require(lubridate)
RM <- "F" # global rendermode, L: load pdata; F: fast load pdf # nolint
isRendering <- isTRUE(getOption("knitr.in.progress"))
require(tidyverse)
require(lubridate)
require(patchwork)
require(drwateR)
require(dwfun)
require(rmdify)
rmdify::rmd_init()
require(langeR)
require(dateR)
require(uniteR)
biburl <- "http://drwater.rcees.ac.cn/cloud/s/ref_ming/download/Ref.bib"
if (!isRendering) { download.file(biburl, destfile = "Ref.bib") }
```
# Supplementary Material {-}
+90 -3
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@@ -42,14 +42,28 @@
\setlength{\emergencystretch}{3em} % prevent overfull lines
\setcounter{secnumdepth}{5}
% Make \paragraph and \subparagraph free-standing
\makeatletter
\ifx\paragraph\undefined\else
\let\oldparagraph\paragraph
\renewcommand{\paragraph}[1]{\oldparagraph{#1}\mbox{}}
\renewcommand{\paragraph}{
\@ifstar
\xxxParagraphStar
\xxxParagraphNoStar
}
\newcommand{\xxxParagraphStar}[1]{\oldparagraph*{#1}\mbox{}}
\newcommand{\xxxParagraphNoStar}[1]{\oldparagraph{#1}\mbox{}}
\fi
\ifx\subparagraph\undefined\else
\let\oldsubparagraph\subparagraph
\renewcommand{\subparagraph}[1]{\oldsubparagraph{#1}\mbox{}}
\renewcommand{\subparagraph}{
\@ifstar
\xxxSubParagraphStar
\xxxSubParagraphNoStar
}
\newcommand{\xxxSubParagraphStar}[1]{\oldsubparagraph*{#1}\mbox{}}
\newcommand{\xxxSubParagraphNoStar}[1]{\oldsubparagraph{#1}\mbox{}}
\fi
\makeatother
\providecommand{\tightlist}{%
@@ -152,6 +166,72 @@
\usepackage{lineno}
\linenumbers
\makeatletter
\@ifpackageloaded{float}{}{\usepackage{float}}
\floatstyle{plain}
\@ifundefined{c@chapter}{\newfloat{sfg}{h}{lost}}{\newfloat{sfg}{h}{lost}[chapter]}
\floatname{sfg}{Fig. S}
\newcommand*\quartosfgref[1]{Fig. \hyperref[#1]{S\ref{#1}}}
\@ifpackageloaded{caption}{}{\usepackage{caption}}
\DeclareCaptionLabelFormat{quartosfgreflabelformat}{#1#2}
\captionsetup[sfg]{labelformat=quartosfgreflabelformat}
\newcommand*\listofsfgs{\listof{sfg}{List of Supplementary Figures}}
\makeatother
\makeatletter
\@ifpackageloaded{float}{}{\usepackage{float}}
\floatstyle{plain}
\@ifundefined{c@chapter}{\newfloat{stb}{h}{lost}}{\newfloat{stb}{h}{lost}[chapter]}
\floatname{stb}{Table S}
\newcommand*\quartostbref[1]{Table \hyperref[#1]{S\ref{#1}}}
\@ifpackageloaded{caption}{}{\usepackage{caption}}
\DeclareCaptionLabelFormat{quartostbreflabelformat}{#1#2}
\captionsetup[stb]{labelformat=quartostbreflabelformat}
\newcommand*\listofstbs{\listof{stb}{List of Supplementary Tables}}
\makeatother
\makeatletter
\@ifpackageloaded{float}{}{\usepackage{float}}
\floatstyle{plain}
\@ifundefined{c@chapter}{\newfloat{seq}{h}{lost}}{\newfloat{seq}{h}{lost}[chapter]}
\floatname{seq}{Eq S}
\newcommand*\quartoseqref[1]{Eq \hyperref[#1]{S\ref{#1}}}
\@ifpackageloaded{caption}{}{\usepackage{caption}}
\DeclareCaptionLabelFormat{quartoseqreflabelformat}{#1#2}
\captionsetup[seq]{labelformat=quartoseqreflabelformat}
\newcommand*\listofseqs{\listof{seq}{List of Supplementary Equations}}
\makeatother
\makeatletter
\@ifpackageloaded{float}{}{\usepackage{float}}
\floatstyle{plain}
\@ifundefined{c@chapter}{\newfloat{rfg}{h}{lost}}{\newfloat{rfg}{h}{lost}[chapter]}
\floatname{rfg}{Fig. R}
\newcommand*\quartorfgref[1]{Fig. \hyperref[#1]{R\ref{#1}}}
\@ifpackageloaded{caption}{}{\usepackage{caption}}
\DeclareCaptionLabelFormat{quartorfgreflabelformat}{#1#2}
\captionsetup[rfg]{labelformat=quartorfgreflabelformat}
\newcommand*\listofrfgs{\listof{rfg}{List of Revision Figures}}
\makeatother
\makeatletter
\@ifpackageloaded{float}{}{\usepackage{float}}
\floatstyle{plain}
\@ifundefined{c@chapter}{\newfloat{rtb}{h}{lost}}{\newfloat{rtb}{h}{lost}[chapter]}
\floatname{rtb}{Table R}
\newcommand*\quartortbref[1]{Table \hyperref[#1]{R\ref{#1}}}
\@ifpackageloaded{caption}{}{\usepackage{caption}}
\DeclareCaptionLabelFormat{quartortbreflabelformat}{#1#2}
\captionsetup[rtb]{labelformat=quartortbreflabelformat}
\newcommand*\listofrtbs{\listof{rtb}{List of Revision Tables}}
\makeatother
\makeatletter
\@ifpackageloaded{float}{}{\usepackage{float}}
\floatstyle{plain}
\@ifundefined{c@chapter}{\newfloat{req}{h}{lost}}{\newfloat{req}{h}{lost}[chapter]}
\floatname{req}{Eq R}
\newcommand*\quartoreqref[1]{Eq \hyperref[#1]{R\ref{#1}}}
\@ifpackageloaded{caption}{}{\usepackage{caption}}
\DeclareCaptionLabelFormat{quartoreqreflabelformat}{#1#2}
\captionsetup[req]{labelformat=quartoreqreflabelformat}
\newcommand*\listofreqs{\listof{req}{List of Revision Equations}}
\makeatother
\makeatletter
\@ifpackageloaded{caption}{}{\usepackage{caption}}
\AtBeginDocument{%
\ifdefined\contentsname
@@ -185,6 +265,7 @@
\@ifundefined{c@chapter}{\newfloat{codelisting}{h}{lop}}{\newfloat{codelisting}{h}{lop}[chapter]}
\floatname{codelisting}{Listing}
\newcommand*\listoflistings{\listof{codelisting}{List of Listings}}
\captionsetup{labelsep=none}
\makeatother
\makeatletter
\makeatother
@@ -192,6 +273,7 @@
\@ifpackageloaded{caption}{}{\usepackage{caption}}
\@ifpackageloaded{subcaption}{}{\usepackage{subcaption}}
\makeatother
\ifLuaTeX
\usepackage[bidi=basic]{babel}
\else
@@ -206,7 +288,8 @@
\fi
\usepackage[]{natbib}
\bibliographystyle{elsarticle-num}
\IfFileExists{bookmark.sty}{\usepackage{bookmark}}{\usepackage{hyperref}}
\usepackage{bookmark}
\IfFileExists{xurl.sty}{\usepackage{xurl}}{} % add URL line breaks if available
\urlstyle{same} % disable monospaced font for URLs
\hypersetup{
@@ -220,6 +303,7 @@
urlcolor={Blue},
pdfcreator={LaTeX via pandoc}}
\setlength{\parindent}{6pt}
\begin{document}
\begin{frontmatter}
@@ -251,6 +335,8 @@ Sciences},city={Beijing},postcode={100049}}
\end{frontmatter}
\section*{Supplementary Material}\label{supplementary-material}
\addcontentsline{toc}{section}{Supplementary Material}
@@ -263,4 +349,5 @@ to the main text.
\bibliography{../BB/Ref.bib,../BB/localRef.bib}
\end{document}