update
This commit is contained in:
@@ -0,0 +1,9 @@
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/figure/
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/*.spl
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/*.log
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/*.blg
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/*.bbl
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/*.toc
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/.DS_Store
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/*.tex
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@@ -0,0 +1,25 @@
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\relax
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\providecommand\zref@newlabel[2]{}
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||||
\providecommand \babel@aux [2]{\global \let \babel@toc \@gobbletwo }
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||||
\@nameuse{bbl@beforestart}
|
||||
\providecommand\hyper@newdestlabel[2]{}
|
||||
\providecommand*\HyPL@Entry[1]{}
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||||
\HyPL@Entry{0<</S/D>>}
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||||
\babel@aux{english}{}
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||||
\newlabel{abstract}{{}{2}{}{Doc-Start}{}}
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||||
\@writefile{toc}{\contentsline {section}{Abstract}{2}{Doc-Start}\protected@file@percent }
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\@writefile{toc}{\contentsline {section}{Main}{3}{Doc-Start}\protected@file@percent }
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\newlabel{main}{{}{3}{Main}{Doc-Start}{}}
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\newlabel{r:r1q0101}{{This is something useful according to Reviewer 1.}{}}
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\newlabel{r1q0101}{{}{3}{Main}{Doc-Start}{}}
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\newlabel{r1q0101end}{{}{3}{Main}{Doc-Start}{}}
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\newlabel{line:r1q0101}{{11}{3}{}{}{}}
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\newlabel{line:r1q0101end}{{11}{3}{}{}{}}
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||||
\@writefile{toc}{\contentsline {section}{Methods}{3}{Doc-Start}\protected@file@percent }
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||||
\newlabel{methods}{{}{3}{Methods}{Doc-Start}{}}
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||||
\@writefile{toc}{\contentsline {section}{Results}{3}{Doc-Start}\protected@file@percent }
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\newlabel{results}{{}{3}{Results}{Doc-Start}{}}
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\newlabel{references}{{}{4}{}{Doc-Start}{}}
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\@writefile{toc}{\contentsline {section}{References}{4}{Doc-Start}\protected@file@percent }
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\newlabel{refs}{{}{4}{}{section*.1}{}}
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\gdef \@abspage@last{4}
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@@ -1,29 +1,23 @@
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---
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msname: MS
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smname: SM
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# abstract: ""
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# keywords:
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# - KEYWORD1;
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# date: last-modified
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highlights: ""
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isMS: true
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date: ""
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bibliography: [../BB/Ref.bib, ../BB/localRef.bib]
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csl: _extensions/drwater/dwinst/nature.csl
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# titlegraphical: "../figures/GA.pdf"
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latex-clean: false # to keep aux
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||||
endfloat: true
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doublespacing: true
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linenumber: true
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||||
format:
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||||
dwms-html: default
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||||
dwms-docx: default
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||||
dwms-pdf:
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||||
fontsize: 12pt
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||||
keep-md: false
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||||
keep-tex: true
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||||
header-includes:
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||||
- \usepackage{endfloat}
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||||
- \doublespacing
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||||
- \linenumbers
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dwms-pdf: default
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||||
filters:
|
||||
- latex-environment
|
||||
- authoraffil
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||||
lightbox: auto
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||||
commands: [clab]
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---
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||||
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@@ -45,7 +39,6 @@ dwfun::init()
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# Abstract {-}
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{{< pagebreak >}}
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{{< include MS_main.qmd >}}
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@@ -1,419 +0,0 @@
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% Options for packages loaded elsewhere
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% Options for packages loaded elsewhere
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||||
\PassOptionsToPackage{unicode}{hyperref}
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||||
\PassOptionsToPackage{hyphens}{url}
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||||
\PassOptionsToPackage{dvipsnames,svgnames,x11names}{xcolor}
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||||
\PassOptionsToPackage{space}{xeCJK}
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||||
%
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\documentclass[
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english,
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12pt,
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letterpaper,
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]{article}
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||||
\usepackage{xcolor}
|
||||
\usepackage[margin=1in]{geometry}
|
||||
\usepackage{amsmath,amssymb}
|
||||
\setcounter{secnumdepth}{-\maxdimen} % remove section numbering
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||||
\usepackage{iftex}
|
||||
\ifPDFTeX
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||||
\usepackage[T1]{fontenc}
|
||||
\usepackage[utf8]{inputenc}
|
||||
\usepackage{textcomp} % provide euro and other symbols
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||||
\else % if luatex or xetex
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||||
\usepackage{unicode-math} % this also loads fontspec
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||||
\defaultfontfeatures{Scale=MatchLowercase}
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||||
\defaultfontfeatures[\rmfamily]{Ligatures=TeX,Scale=1}
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||||
\fi
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||||
\usepackage{lmodern}
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||||
\ifPDFTeX\else
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||||
% xetex/luatex font selection
|
||||
\setmainfont[]{Source Sans 3}
|
||||
\setsansfont[Color=39729E]{Gill Sans}
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||||
\setmonofont[]{JetBrains Mono}
|
||||
\setmathfont[]{Cambria Math}
|
||||
\ifXeTeX
|
||||
\usepackage{xeCJK}
|
||||
\setCJKmainfont[]{SimHei}
|
||||
\fi
|
||||
\ifLuaTeX
|
||||
\usepackage[]{luatexja-fontspec}
|
||||
\setmainjfont[]{SimHei}
|
||||
\fi
|
||||
\fi
|
||||
% Use upquote if available, for straight quotes in verbatim environments
|
||||
\IfFileExists{upquote.sty}{\usepackage{upquote}}{}
|
||||
\IfFileExists{microtype.sty}{% use microtype if available
|
||||
\usepackage[]{microtype}
|
||||
\UseMicrotypeSet[protrusion]{basicmath} % disable protrusion for tt fonts
|
||||
}{}
|
||||
\makeatletter
|
||||
\@ifundefined{KOMAClassName}{% if non-KOMA class
|
||||
\IfFileExists{parskip.sty}{%
|
||||
\usepackage{parskip}
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||||
}{% else
|
||||
\setlength{\parindent}{0pt}
|
||||
\setlength{\parskip}{6pt plus 2pt minus 1pt}}
|
||||
}{% if KOMA class
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||||
\KOMAoptions{parskip=half}}
|
||||
\makeatother
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||||
|
||||
|
||||
\usepackage{longtable,booktabs,array}
|
||||
\usepackage{calc} % for calculating minipage widths
|
||||
% Correct order of tables after \paragraph or \subparagraph
|
||||
\usepackage{etoolbox}
|
||||
\makeatletter
|
||||
\patchcmd\longtable{\par}{\if@noskipsec\mbox{}\fi\par}{}{}
|
||||
\makeatother
|
||||
% Allow footnotes in longtable head/foot
|
||||
\IfFileExists{footnotehyper.sty}{\usepackage{footnotehyper}}{\usepackage{footnote}}
|
||||
\makesavenoteenv{longtable}
|
||||
\usepackage{graphicx}
|
||||
\makeatletter
|
||||
\newsavebox\pandoc@box
|
||||
\newcommand*\pandocbounded[1]{% scales image to fit in text height/width
|
||||
\sbox\pandoc@box{#1}%
|
||||
\Gscale@div\@tempa{\textheight}{\dimexpr\ht\pandoc@box+\dp\pandoc@box\relax}%
|
||||
\Gscale@div\@tempb{\linewidth}{\wd\pandoc@box}%
|
||||
\ifdim\@tempb\p@<\@tempa\p@\let\@tempa\@tempb\fi% select the smaller of both
|
||||
\ifdim\@tempa\p@<\p@\scalebox{\@tempa}{\usebox\pandoc@box}%
|
||||
\else\usebox{\pandoc@box}%
|
||||
\fi%
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||||
}
|
||||
% Set default figure placement to htbp
|
||||
\def\fps@figure{htbp}
|
||||
\makeatother
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||||
|
||||
|
||||
|
||||
\ifLuaTeX
|
||||
\usepackage[bidi=basic]{babel}
|
||||
\else
|
||||
\usepackage[bidi=default]{babel}
|
||||
\fi
|
||||
\ifPDFTeX
|
||||
\else
|
||||
\babelfont{rm}[]{Source Sans 3}
|
||||
\fi
|
||||
% get rid of language-specific shorthands (see #6817):
|
||||
\let\LanguageShortHands\languageshorthands
|
||||
\def\languageshorthands#1{}
|
||||
\ifLuaTeX
|
||||
\usepackage[english]{selnolig} % disable illegal ligatures
|
||||
\fi
|
||||
|
||||
|
||||
\setlength{\emergencystretch}{3em} % prevent overfull lines
|
||||
|
||||
\providecommand{\tightlist}{%
|
||||
\setlength{\itemsep}{0pt}\setlength{\parskip}{0pt}}
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
% -----------------------
|
||||
% CUSTOM PREAMBLE STUFF
|
||||
% -----------------------
|
||||
\usepackage{enumitem}
|
||||
\usepackage{fontspec}
|
||||
\usepackage{float}
|
||||
\usepackage[normalem]{ulem}
|
||||
\usepackage{hyperref}
|
||||
\usepackage{nameref} %needed by zref-xr
|
||||
\usepackage{zref-xr,zref-hyperref,zref-user}
|
||||
\usepackage{xr-hyper}
|
||||
\usepackage[normalem]{ulem}
|
||||
\usepackage{setspace}
|
||||
\usepackage{lineno}
|
||||
\usepackage{caption}
|
||||
\captionsetup{singlelinecheck=off}
|
||||
\usepackage[UTF8, scheme=plain]{ctex}
|
||||
\usepackage{orcidlink}
|
||||
|
||||
% \setkomafont{author}{\normalsize}
|
||||
|
||||
% for revision
|
||||
\usepackage{adjustbox}
|
||||
% \usepackage{xcolor}
|
||||
\usepackage{mdframed}
|
||||
\newmdenv[topline=false,
|
||||
leftline=true,
|
||||
bottomline=false,
|
||||
rightline=false,
|
||||
linewidth=3pt,
|
||||
%backgroundcolor=lightgray,
|
||||
linecolor=gray!30,
|
||||
backgroundcolor=gray!5,
|
||||
skipabove=\topsep,
|
||||
skipbelow=\topsep,
|
||||
leftmargin=0pt,
|
||||
rightmargin=0pt,
|
||||
innertopmargin=0pt,
|
||||
innerbottommargin=0pt
|
||||
]{refquote}
|
||||
\newmdenv[topline=false,
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||||
leftline=true,
|
||||
bottomline=false,
|
||||
rightline=false,
|
||||
linewidth=3pt,
|
||||
%backgroundcolor=lightgray,
|
||||
backgroundcolor=red!3!white,
|
||||
linecolor=red!30!white,
|
||||
skipabove=\topsep,
|
||||
skipbelow=\topsep,
|
||||
leftmargin=0pt,
|
||||
rightmargin=0pt,
|
||||
innertopmargin=10pt,
|
||||
innerbottommargin=10pt
|
||||
]{question}
|
||||
% setup hyperlink for page and line number
|
||||
\def\msname{MS}
|
||||
\def\smname{SM}
|
||||
\setenumerate{labelsep=*, leftmargin=1.0pc}
|
||||
%\zexternaldocument*{ManuscriptNew\veraa}
|
||||
\zexternaldocument*{\msname}
|
||||
\zexternaldocument*{\smname}
|
||||
\newcommand{\hlabel}[1]{\label{#1}\hypertarget{#1}{
|
||||
\linelabel{line:#1}}}
|
||||
%\externaldocument[si-]{\smname\veraa}[\smname\veraa.pdf]
|
||||
\makeatletter
|
||||
\newcommand{\clab}[2][]{
|
||||
\protected@write\@auxout{\let\clab\@secondoftwo}{
|
||||
\string\newlabel{r:#1}{{#2}{}}}%
|
||||
\hlabel{#1}#2\hlabel{#1end}}
|
||||
\makeatother
|
||||
\newcommand{\zhypera}[1]{\href[pdfnewwindow]{\msname.pdf\##1}{\\[1ex]\textbf{Page \zpageref{#1}, Line
|
||||
\zref{line:#1}--\zref{line:#1end}:}\\}}
|
||||
\newcommand{\cref}[1]{\begin{refquote}\zhypera{#1}{\zref{r:#1}}\\[-0.5ex]\end{refquote}}
|
||||
% \newenvironment{ra}[1][\unskip]{\par \noindent \\[-1ex] \textbf{Response/Action:}\par\bf}{\ \\}
|
||||
\renewenvironment{quote}{\begin{question}}{\end{question}}
|
||||
% \renewenvironment{verbatim}{\begin{ra}}{\end{ra}}
|
||||
|
||||
|
||||
|
||||
|
||||
% -----------------
|
||||
% Title block stuff
|
||||
% -----------------
|
||||
|
||||
% Title
|
||||
\makeatletter
|
||||
\renewcommand{\title}[1]{\gdef\@title{\large\textbf{#1}}} % Adjust \Huge or other font commands
|
||||
\makeatother
|
||||
|
||||
|
||||
% ------------------
|
||||
% Section headings
|
||||
% ------------------
|
||||
\usepackage{titlesec}
|
||||
\titleformat*{\section}{\Large\sffamily\bfseries\raggedright}
|
||||
\titleformat*{\subsection}{\large\sffamily\bfseries\raggedright}
|
||||
\titleformat*{\subsubsection}{\normalsize\sffamily\bfseries\raggedright}
|
||||
\titleformat*{\paragraph}{\small\sffamily\bfseries\raggedright}
|
||||
|
||||
%\titlespacing{<command>}{<left>}{<before-sep>}{<after-sep>}
|
||||
% Starred version removes indentation in following paragraph
|
||||
\titlespacing*{\section}{0em}{2em}{0.1em}
|
||||
\titlespacing*{\subsection}{0em}{1.25em}{0.1em}
|
||||
\titlespacing*{\subsubsection}{0em}{0.75em}{0em}
|
||||
|
||||
% ------------------
|
||||
% Headers/Footers
|
||||
% ------------------
|
||||
% \usepackage{fancyhdr}
|
||||
% \pagestyle{fancy}
|
||||
% \fancyhf{}
|
||||
% \fancyhead[L,C,R]{}
|
||||
% \fancyfoot[L,C]{}
|
||||
% \fancyfoot[R]{\thepage}
|
||||
% \renewcommand{\headrulewidth}{1pt}
|
||||
% \fancypagestyle{plain}{%
|
||||
% \renewcommand{\headrulewidth}{0pt}%
|
||||
% \fancyhf{}%
|
||||
% \fancyfoot[R]{\thepage}%
|
||||
% }
|
||||
% \renewcommand\footnoterule{\rule{\linewidth}{0.1pt}\vspace{5pt}}
|
||||
|
||||
% ------------------
|
||||
% Captions
|
||||
% ------------------
|
||||
\usepackage[labelfont=bf,labelsep=period]{caption}
|
||||
\captionsetup[figure]{font=footnotesize,justification=raggedright,singlelinecheck=false,format=hang}
|
||||
|
||||
|
||||
% ---------------------------
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||||
% END CUSTOM PREAMBLE STUFF
|
||||
% ---------------------------
|
||||
\usepackage{endfloat}
|
||||
\doublespacing
|
||||
\linenumbers
|
||||
\makeatletter
|
||||
\@ifpackageloaded{float}{}{\usepackage{float}}
|
||||
\floatstyle{plain}
|
||||
\@ifundefined{c@chapter}{\newfloat{sfg}{h}{lost}}{\newfloat{sfg}{h}{lost}[chapter]}
|
||||
\floatname{sfg}{Supplementary Fig.}
|
||||
\newcommand*\listofsfgs{\listof{sfg}{List of Supplementary Figures}}
|
||||
\makeatother
|
||||
\makeatletter
|
||||
\@ifpackageloaded{float}{}{\usepackage{float}}
|
||||
\floatstyle{plain}
|
||||
\@ifundefined{c@chapter}{\newfloat{stb}{h}{lost}}{\newfloat{stb}{h}{lost}[chapter]}
|
||||
\floatname{stb}{Supplementary Table}
|
||||
\newcommand*\listofstbs{\listof{stb}{List of Supplementary Tables}}
|
||||
\makeatother
|
||||
\makeatletter
|
||||
\@ifpackageloaded{float}{}{\usepackage{float}}
|
||||
\floatstyle{plain}
|
||||
\@ifundefined{c@chapter}{\newfloat{seq}{h}{lost}}{\newfloat{seq}{h}{lost}[chapter]}
|
||||
\floatname{seq}{Supplementary Eq.}
|
||||
\newcommand*\listofseqs{\listof{seq}{List of Supplementary Equations}}
|
||||
\makeatother
|
||||
\makeatletter
|
||||
\@ifpackageloaded{float}{}{\usepackage{float}}
|
||||
\floatstyle{plain}
|
||||
\@ifundefined{c@chapter}{\newfloat{rfg}{h}{lost}}{\newfloat{rfg}{h}{lost}[chapter]}
|
||||
\floatname{rfg}{Fig. R}
|
||||
\newcommand*\quartorfgref[1]{Fig. \hyperref[#1]{R\ref{#1}}}
|
||||
\@ifpackageloaded{caption}{}{\usepackage{caption}}
|
||||
\DeclareCaptionLabelFormat{quartorfgreflabelformat}{#1#2}
|
||||
\captionsetup[rfg]{labelformat=quartorfgreflabelformat}
|
||||
\newcommand*\listofrfgs{\listof{rfg}{List of Revision Figures}}
|
||||
\makeatother
|
||||
\makeatletter
|
||||
\@ifpackageloaded{float}{}{\usepackage{float}}
|
||||
\floatstyle{plain}
|
||||
\@ifundefined{c@chapter}{\newfloat{rtb}{h}{lost}}{\newfloat{rtb}{h}{lost}[chapter]}
|
||||
\floatname{rtb}{Table R}
|
||||
\newcommand*\quartortbref[1]{Table \hyperref[#1]{R\ref{#1}}}
|
||||
\@ifpackageloaded{caption}{}{\usepackage{caption}}
|
||||
\DeclareCaptionLabelFormat{quartortbreflabelformat}{#1#2}
|
||||
\captionsetup[rtb]{labelformat=quartortbreflabelformat}
|
||||
\newcommand*\listofrtbs{\listof{rtb}{List of Revision Tables}}
|
||||
\makeatother
|
||||
\makeatletter
|
||||
\@ifpackageloaded{float}{}{\usepackage{float}}
|
||||
\floatstyle{plain}
|
||||
\@ifundefined{c@chapter}{\newfloat{req}{h}{lost}}{\newfloat{req}{h}{lost}[chapter]}
|
||||
\floatname{req}{Eq R}
|
||||
\newcommand*\quartoreqref[1]{Eq \hyperref[#1]{R\ref{#1}}}
|
||||
\@ifpackageloaded{caption}{}{\usepackage{caption}}
|
||||
\DeclareCaptionLabelFormat{quartoreqreflabelformat}{#1#2}
|
||||
\captionsetup[req]{labelformat=quartoreqreflabelformat}
|
||||
\newcommand*\listofreqs{\listof{req}{List of Revision Equations}}
|
||||
\makeatother
|
||||
\makeatletter
|
||||
\@ifpackageloaded{caption}{}{\usepackage{caption}}
|
||||
\AtBeginDocument{%
|
||||
\ifdefined\contentsname
|
||||
\renewcommand*\contentsname{Table of contents}
|
||||
\else
|
||||
\newcommand\contentsname{Table of contents}
|
||||
\fi
|
||||
\ifdefined\listfigurename
|
||||
\renewcommand*\listfigurename{List of Figures}
|
||||
\else
|
||||
\newcommand\listfigurename{List of Figures}
|
||||
\fi
|
||||
\ifdefined\listtablename
|
||||
\renewcommand*\listtablename{List of Tables}
|
||||
\else
|
||||
\newcommand\listtablename{List of Tables}
|
||||
\fi
|
||||
\ifdefined\figurename
|
||||
\renewcommand*\figurename{Fig.}
|
||||
\else
|
||||
\newcommand\figurename{Fig.}
|
||||
\fi
|
||||
\ifdefined\tablename
|
||||
\renewcommand*\tablename{Table}
|
||||
\else
|
||||
\newcommand\tablename{Table}
|
||||
\fi
|
||||
}
|
||||
\@ifpackageloaded{float}{}{\usepackage{float}}
|
||||
\floatstyle{ruled}
|
||||
\@ifundefined{c@chapter}{\newfloat{codelisting}{h}{lop}}{\newfloat{codelisting}{h}{lop}[chapter]}
|
||||
\floatname{codelisting}{Listing}
|
||||
\newcommand*\listoflistings{\listof{codelisting}{List of Listings}}
|
||||
\captionsetup{labelsep=colon}
|
||||
\makeatother
|
||||
\makeatletter
|
||||
\makeatother
|
||||
\makeatletter
|
||||
\@ifpackageloaded{caption}{}{\usepackage{caption}}
|
||||
\@ifpackageloaded{subcaption}{}{\usepackage{subcaption}}
|
||||
\makeatother
|
||||
\usepackage{bookmark}
|
||||
\IfFileExists{xurl.sty}{\usepackage{xurl}}{} % add URL line breaks if available
|
||||
\urlstyle{same}
|
||||
\hypersetup{
|
||||
pdftitle={MANUSCRIPT TITLE},
|
||||
pdfauthor={, , and },
|
||||
pdflang={en},
|
||||
colorlinks=true,
|
||||
linkcolor={blue},
|
||||
filecolor={Maroon},
|
||||
citecolor={Blue},
|
||||
urlcolor={blue},
|
||||
pdfcreator={LaTeX via pandoc}}
|
||||
|
||||
|
||||
\title{MANUSCRIPT TITLE}
|
||||
\author{\footnotesize Xxxxx
|
||||
Yyyy\textsuperscript{a,\#} \and \footnotesize Ming
|
||||
Su\textsuperscript{\orcidlink{0000000198211268},a,b,\#,*} \and \footnotesize Min
|
||||
Yang\textsuperscript{a,b,*}}
|
||||
\date{}
|
||||
\begin{document}
|
||||
|
||||
% for some reason this does not work in header
|
||||
\renewcommand{\abstractname}{Abstract.}
|
||||
|
||||
% add the short title to the fancy header
|
||||
|
||||
\maketitle
|
||||
%\noindent \rule{\linewidth}{.5pt}
|
||||
%\noindent \rule{\linewidth}{.5pt}
|
||||
|
||||
|
||||
\textsuperscript{\#} These authors contributed equally to this work.
|
||||
|
||||
\textsuperscript{a} Key Laboratory of Environmental Aguatic Chemistry,
|
||||
State Key Laboratory of Regional Environment and Sustainability,
|
||||
Research Center for Eco-Environmental Sciences, Chinese Academy of
|
||||
Sciences, Beijing 100085, China.\\
|
||||
\textsuperscript{b} University of Chinese Academy of Sciences, Beijing
|
||||
100049, China.
|
||||
|
||||
\textsuperscript{*} Corresponding to:
|
||||
\href{mailto:mingsu@rcees.ac.cn}{Ming Su (mingsu@rcees.ac.cn)},
|
||||
\href{mailto:yangmin@rcees.ac.cn}{Min Yang (yangmin@rcees.ac.cn)}
|
||||
|
||||
\newpage{}
|
||||
|
||||
\section*{Abstract}\label{abstract}
|
||||
\addcontentsline{toc}{section}{Abstract}
|
||||
|
||||
\newpage{}
|
||||
|
||||
\section{Main}\label{main}
|
||||
|
||||
\section{Methods}\label{methods}
|
||||
|
||||
\section{Results}\label{results}
|
||||
|
||||
\newpage{}
|
||||
|
||||
\section*{References}\label{references}
|
||||
\addcontentsline{toc}{section}{References}
|
||||
|
||||
\phantomsection\label{refs}
|
||||
|
||||
\newpage{}
|
||||
|
||||
|
||||
|
||||
|
||||
\end{document}
|
||||
@@ -1,2 +1,5 @@
|
||||
# Main
|
||||
|
||||
This is a nice paragraph. [This is something useful according to Reviewer 1.]{.clab options="r1q0101"}
|
||||
|
||||
Figure from SM.pdf, see `r zref("sfg-demo")`.
|
||||
|
||||
@@ -2,7 +2,7 @@
|
||||
subtitle: "Revision Note"
|
||||
msname: MS
|
||||
smname: SM
|
||||
# date: last-modified
|
||||
isRN: true
|
||||
bibliography: [../BB/Ref.bib, ../BB/localRef.bib]
|
||||
csl: _extensions/drwater/dwinst/nature.csl
|
||||
format:
|
||||
@@ -10,16 +10,10 @@ format:
|
||||
dwms-docx: default
|
||||
dwms-pdf:
|
||||
number-sections: true
|
||||
latex-clean: true
|
||||
header-includes:
|
||||
- \renewcommand{\thetable}{R\arabic{table}}
|
||||
- \renewcommand{\thefigure}{R\arabic{figure}}
|
||||
- \renewcommand{\theequation}{R\arabic{equation}}
|
||||
- \renewcommand{\figurename}{Figure}
|
||||
- \renewcommand{\tablename}{Table}
|
||||
filters:
|
||||
- latex-environment
|
||||
- authoraffil
|
||||
lightbox: auto
|
||||
---
|
||||
|
||||
```{r}
|
||||
@@ -44,7 +38,7 @@ Thank you.
|
||||
|
||||
# Reviewer #1:
|
||||
|
||||
> 0. COMMENT 1
|
||||
> 0. COMMENT 0
|
||||
|
||||
**Response/Action:**
|
||||
|
||||
@@ -52,3 +46,29 @@ Thank you very much for your revision. We made changes as shown below.
|
||||
|
||||
`r cref("r1q0101")`
|
||||
|
||||
|
||||
> 1. COMMENT 1
|
||||
|
||||
**Response/Action:**
|
||||
|
||||
Thank you very much for your revision. We added a figure like below.
|
||||
|
||||
::: {#rfg-figr1}
|
||||
|
||||
```{r}
|
||||
plot(1)
|
||||
```
|
||||
Figure in RN to clarify.
|
||||
:::
|
||||
|
||||
# Reviewer #2
|
||||
|
||||
> 1. COMMENT 1
|
||||
|
||||
|
||||
**Response/Action:**
|
||||
|
||||
Thank you very much for your revision. We made changes as shown below.
|
||||
|
||||
|
||||
`r cref("r2q0101")`
|
||||
|
||||
@@ -6,6 +6,13 @@
|
||||
\providecommand*\HyPL@Entry[1]{}
|
||||
\HyPL@Entry{0<</S/D>>}
|
||||
\babel@aux{english}{}
|
||||
\@writefile{toc}{\contentsline {section}{Supplementary Fig.~\ref {sfg-demo}}{3}{Doc-Start}\protected@file@percent }
|
||||
\newlabel{sfg-demo}{{}{3}{\texorpdfstring {Supplementary Fig.~\ref {sfg-demo}}{Supplementary Fig.~}}{Doc-Start}{}}
|
||||
\newlabel{r:r2q0101}{{A new supplementary figure.}{}}
|
||||
\newlabel{r2q0101}{{}{3}{\texorpdfstring {Supplementary Fig.~\ref {sfg-demo}}{Supplementary Fig.~}}{Doc-Start}{}}
|
||||
\newlabel{r2q0101end}{{}{3}{\texorpdfstring {Supplementary Fig.~\ref {sfg-demo}}{Supplementary Fig.~}}{Doc-Start}{}}
|
||||
\newlabel{line:r2q0101}{{14}{3}{}{}{}}
|
||||
\newlabel{line:r2q0101end}{{14}{3}{}{}{}}
|
||||
\@writefile{lost}{\contentsline {sfg}{\numberline {1}{\ignorespaces Caption of demo figure}}{3}{sfg.1}\protected@file@percent }
|
||||
\newlabel{sfg-demo}{{1}{3}{Caption of demo figure}{sfg.1}{}}
|
||||
\gdef \@abspage@last{3}
|
||||
|
||||
@@ -1,27 +1,24 @@
|
||||
---
|
||||
msname: MS
|
||||
smname: SM
|
||||
bibliography: [../BB/Ref.bib, ../BB/localRef.bib]
|
||||
csl: _extensions/drwater/dwinst/nature.csl
|
||||
isSM: true
|
||||
# bibliography: [../BB/Ref.bib, ../BB/localRef.bib]
|
||||
# csl: _extensions/drwater/dwinst/nature.csl
|
||||
subtitle: "Supplementary Information"
|
||||
date: ""
|
||||
keep-tex: true
|
||||
latex-clean: false # to keep aux
|
||||
linenumber: true
|
||||
format:
|
||||
dwms-html: default
|
||||
dwms-docx: default
|
||||
dwms-pdf:
|
||||
latex-clean: false # to keep aux
|
||||
keep-md: false
|
||||
keep-tex: true
|
||||
header-includes:
|
||||
- \doublespacing
|
||||
- \linenumbers
|
||||
- \let\oldsection\section
|
||||
- \renewcommand{\section}{\clearpage\oldsection}
|
||||
- \let\oldsubsection\subsection
|
||||
- \renewcommand{\subsection}{\clearpage\oldsubsection}
|
||||
toc: false # 手动设置了
|
||||
filters:
|
||||
- latex-environment
|
||||
- authoraffil
|
||||
lightbox: auto
|
||||
commands: [clab]
|
||||
---
|
||||
|
||||
\thispagestyle{empty}
|
||||
@@ -39,11 +36,9 @@ require(drwateR)
|
||||
rmdify::rmd_init()
|
||||
```
|
||||
|
||||
|
||||
Figures and/or tables are provided below as the supplementary evidences to the main text.
|
||||
|
||||
{{< pagebreak >}}
|
||||
|
||||
|
||||
|
||||
```{=latex}
|
||||
\clearpage
|
||||
@@ -54,9 +49,9 @@ Figures and/or tables are provided below as the supplementary evidences to the m
|
||||
}
|
||||
```
|
||||
|
||||
# [@sfg-demo]
|
||||
|
||||
{{< pagebreak >}}
|
||||
|
||||
[A new supplementary figure.]{.clab options="r2q0101"}
|
||||
|
||||
::: {#sfg-demo}
|
||||
|
||||
|
||||
Binary file not shown.
+1
-1
Submodule _extensions/drwater updated: 5c1144f28b...7870d6b57b
+1
-1
@@ -137,7 +137,7 @@ project:
|
||||
- MS/RP.qmd
|
||||
- TC/index.qmd
|
||||
- SD/
|
||||
# - MS/RN.qmd
|
||||
- MS/RN.qmd
|
||||
# - MS/AC.qmd
|
||||
- RP/
|
||||
website:
|
||||
|
||||
@@ -13,7 +13,33 @@ dwfun::ggsavep("./figures/GA20240729.pdf", loadit = TRUE)
|
||||
|
||||
```{r}
|
||||
#| echo: false
|
||||
#| cache: false
|
||||
#| output: asis
|
||||
cat(system("grep '^abstract: ' ./MS/MS.qmd | sed -e 's/^abstract: \"*\\(.*\\).$/\\1/g'", intern = TRUE))
|
||||
# function
|
||||
extract_abstract <- function(file) {
|
||||
content <- readLines(file, warn = FALSE)
|
||||
abstract_line <- grep("^# Abstract[^:]", content, ignore.case = TRUE)[1]
|
||||
if (length(abstract_line) == 0) return(NA)
|
||||
start <- abstract_line + 1
|
||||
while (start <= length(content) && trimws(content[start]) == "") {
|
||||
start <- start + 1
|
||||
}
|
||||
if (start > length(content)) return(NA)
|
||||
end <- start
|
||||
while (
|
||||
end <= length(content) &&
|
||||
trimws(content[end]) != "" &&
|
||||
!grepl("^#", content[end])
|
||||
) {
|
||||
end <- end + 1
|
||||
}
|
||||
paste(content[start:(end - 1)], collapse = " ")
|
||||
}
|
||||
# extract
|
||||
file <- "./MS/MS.qmd"
|
||||
abstract <- rmarkdown::yaml_front_matter(file)$abstract
|
||||
if (is.null(abstract)) {
|
||||
abstract <- extract_abstract(file)
|
||||
}
|
||||
cat(abstract)
|
||||
```
|
||||
|
||||
|
||||
Reference in New Issue
Block a user