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/figure/
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/*.spl
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/*.log
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/*.blg
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/*.bbl
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/*.toc
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/.DS_Store
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/*.tex
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@@ -0,0 +1,25 @@
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\relax
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\providecommand\zref@newlabel[2]{}
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\providecommand \babel@aux [2]{\global \let \babel@toc \@gobbletwo }
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\@nameuse{bbl@beforestart}
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\providecommand\hyper@newdestlabel[2]{}
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\providecommand*\HyPL@Entry[1]{}
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\HyPL@Entry{0<</S/D>>}
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\babel@aux{english}{}
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\newlabel{abstract}{{}{2}{}{Doc-Start}{}}
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\@writefile{toc}{\contentsline {section}{Abstract}{2}{Doc-Start}\protected@file@percent }
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\@writefile{toc}{\contentsline {section}{Main}{3}{Doc-Start}\protected@file@percent }
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\newlabel{main}{{}{3}{Main}{Doc-Start}{}}
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\newlabel{r:r1q0101}{{This is something useful according to Reviewer 1.}{}}
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\newlabel{r1q0101}{{}{3}{Main}{Doc-Start}{}}
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\newlabel{r1q0101end}{{}{3}{Main}{Doc-Start}{}}
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\newlabel{line:r1q0101}{{11}{3}{}{}{}}
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\newlabel{line:r1q0101end}{{11}{3}{}{}{}}
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\@writefile{toc}{\contentsline {section}{Methods}{3}{Doc-Start}\protected@file@percent }
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\newlabel{methods}{{}{3}{Methods}{Doc-Start}{}}
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\@writefile{toc}{\contentsline {section}{Results}{3}{Doc-Start}\protected@file@percent }
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\newlabel{results}{{}{3}{Results}{Doc-Start}{}}
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\newlabel{references}{{}{4}{}{Doc-Start}{}}
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\@writefile{toc}{\contentsline {section}{References}{4}{Doc-Start}\protected@file@percent }
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\newlabel{refs}{{}{4}{}{section*.1}{}}
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\gdef \@abspage@last{4}
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@@ -1,29 +1,23 @@
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---
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---
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msname: MS
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msname: MS
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smname: SM
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smname: SM
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# abstract: ""
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isMS: true
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# keywords:
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# - KEYWORD1;
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# date: last-modified
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highlights: ""
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date: ""
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date: ""
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bibliography: [../BB/Ref.bib, ../BB/localRef.bib]
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bibliography: [../BB/Ref.bib, ../BB/localRef.bib]
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csl: _extensions/drwater/dwinst/nature.csl
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csl: _extensions/drwater/dwinst/nature.csl
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# titlegraphical: "../figures/GA.pdf"
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latex-clean: false # to keep aux
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endfloat: true
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doublespacing: true
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linenumber: true
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format:
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format:
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dwms-html: default
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dwms-html: default
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dwms-docx: default
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dwms-docx: default
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dwms-pdf:
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dwms-pdf: default
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fontsize: 12pt
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keep-md: false
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keep-tex: true
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header-includes:
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- \usepackage{endfloat}
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- \doublespacing
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- \linenumbers
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filters:
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filters:
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- latex-environment
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- latex-environment
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- authoraffil
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- authoraffil
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lightbox: auto
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commands: [clab]
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---
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---
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@@ -45,7 +39,6 @@ dwfun::init()
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# Abstract {-}
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# Abstract {-}
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{{< pagebreak >}}
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{{< pagebreak >}}
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{{< include MS_main.qmd >}}
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{{< include MS_main.qmd >}}
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@@ -1,419 +0,0 @@
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% Options for packages loaded elsewhere
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% Options for packages loaded elsewhere
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\PassOptionsToPackage{unicode}{hyperref}
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\PassOptionsToPackage{hyphens}{url}
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\PassOptionsToPackage{dvipsnames,svgnames,x11names}{xcolor}
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\PassOptionsToPackage{space}{xeCJK}
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%
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\documentclass[
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english,
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12pt,
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letterpaper,
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]{article}
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\usepackage{xcolor}
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\usepackage[margin=1in]{geometry}
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\usepackage{amsmath,amssymb}
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\setcounter{secnumdepth}{-\maxdimen} % remove section numbering
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\usepackage{iftex}
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\ifPDFTeX
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\usepackage[T1]{fontenc}
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\usepackage[utf8]{inputenc}
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\usepackage{textcomp} % provide euro and other symbols
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\else % if luatex or xetex
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\usepackage{unicode-math} % this also loads fontspec
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\defaultfontfeatures{Scale=MatchLowercase}
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\defaultfontfeatures[\rmfamily]{Ligatures=TeX,Scale=1}
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\fi
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\usepackage{lmodern}
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\ifPDFTeX\else
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% xetex/luatex font selection
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\setmainfont[]{Source Sans 3}
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\setsansfont[Color=39729E]{Gill Sans}
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\setmonofont[]{JetBrains Mono}
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\setmathfont[]{Cambria Math}
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\ifXeTeX
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\usepackage{xeCJK}
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\setCJKmainfont[]{SimHei}
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\fi
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\ifLuaTeX
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\usepackage[]{luatexja-fontspec}
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\setmainjfont[]{SimHei}
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\fi
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\fi
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% Use upquote if available, for straight quotes in verbatim environments
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\IfFileExists{upquote.sty}{\usepackage{upquote}}{}
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\IfFileExists{microtype.sty}{% use microtype if available
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\usepackage[]{microtype}
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\UseMicrotypeSet[protrusion]{basicmath} % disable protrusion for tt fonts
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}{}
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\makeatletter
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\@ifundefined{KOMAClassName}{% if non-KOMA class
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\IfFileExists{parskip.sty}{%
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\usepackage{parskip}
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}{% else
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\setlength{\parindent}{0pt}
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\setlength{\parskip}{6pt plus 2pt minus 1pt}}
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}{% if KOMA class
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\KOMAoptions{parskip=half}}
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\makeatother
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\usepackage{longtable,booktabs,array}
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\usepackage{calc} % for calculating minipage widths
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% Correct order of tables after \paragraph or \subparagraph
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\usepackage{etoolbox}
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\makeatletter
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\patchcmd\longtable{\par}{\if@noskipsec\mbox{}\fi\par}{}{}
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\makeatother
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% Allow footnotes in longtable head/foot
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\IfFileExists{footnotehyper.sty}{\usepackage{footnotehyper}}{\usepackage{footnote}}
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\makesavenoteenv{longtable}
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\usepackage{graphicx}
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\makeatletter
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\newsavebox\pandoc@box
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\newcommand*\pandocbounded[1]{% scales image to fit in text height/width
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\sbox\pandoc@box{#1}%
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\Gscale@div\@tempa{\textheight}{\dimexpr\ht\pandoc@box+\dp\pandoc@box\relax}%
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\Gscale@div\@tempb{\linewidth}{\wd\pandoc@box}%
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\ifdim\@tempb\p@<\@tempa\p@\let\@tempa\@tempb\fi% select the smaller of both
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\ifdim\@tempa\p@<\p@\scalebox{\@tempa}{\usebox\pandoc@box}%
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\else\usebox{\pandoc@box}%
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\fi%
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}
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% Set default figure placement to htbp
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\def\fps@figure{htbp}
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\makeatother
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\ifLuaTeX
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\usepackage[bidi=basic]{babel}
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\else
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\usepackage[bidi=default]{babel}
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\fi
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\ifPDFTeX
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\else
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\babelfont{rm}[]{Source Sans 3}
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\fi
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% get rid of language-specific shorthands (see #6817):
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\let\LanguageShortHands\languageshorthands
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\def\languageshorthands#1{}
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\ifLuaTeX
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\usepackage[english]{selnolig} % disable illegal ligatures
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\fi
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\setlength{\emergencystretch}{3em} % prevent overfull lines
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\providecommand{\tightlist}{%
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\setlength{\itemsep}{0pt}\setlength{\parskip}{0pt}}
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% -----------------------
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% CUSTOM PREAMBLE STUFF
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% -----------------------
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\usepackage{enumitem}
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\usepackage{fontspec}
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\usepackage{float}
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\usepackage[normalem]{ulem}
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\usepackage{hyperref}
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\usepackage{nameref} %needed by zref-xr
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\usepackage{zref-xr,zref-hyperref,zref-user}
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\usepackage{xr-hyper}
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\usepackage[normalem]{ulem}
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\usepackage{setspace}
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\usepackage{lineno}
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\usepackage{caption}
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\captionsetup{singlelinecheck=off}
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\usepackage[UTF8, scheme=plain]{ctex}
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\usepackage{orcidlink}
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% \setkomafont{author}{\normalsize}
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% for revision
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\usepackage{adjustbox}
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% \usepackage{xcolor}
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\usepackage{mdframed}
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\newmdenv[topline=false,
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leftline=true,
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bottomline=false,
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rightline=false,
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linewidth=3pt,
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%backgroundcolor=lightgray,
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linecolor=gray!30,
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backgroundcolor=gray!5,
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skipabove=\topsep,
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skipbelow=\topsep,
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leftmargin=0pt,
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rightmargin=0pt,
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innertopmargin=0pt,
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innerbottommargin=0pt
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]{refquote}
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\newmdenv[topline=false,
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leftline=true,
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bottomline=false,
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rightline=false,
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linewidth=3pt,
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%backgroundcolor=lightgray,
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backgroundcolor=red!3!white,
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linecolor=red!30!white,
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skipabove=\topsep,
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skipbelow=\topsep,
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leftmargin=0pt,
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rightmargin=0pt,
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innertopmargin=10pt,
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innerbottommargin=10pt
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]{question}
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% setup hyperlink for page and line number
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\def\msname{MS}
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\def\smname{SM}
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\setenumerate{labelsep=*, leftmargin=1.0pc}
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%\zexternaldocument*{ManuscriptNew\veraa}
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\zexternaldocument*{\msname}
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\zexternaldocument*{\smname}
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\newcommand{\hlabel}[1]{\label{#1}\hypertarget{#1}{
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\linelabel{line:#1}}}
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%\externaldocument[si-]{\smname\veraa}[\smname\veraa.pdf]
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\makeatletter
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\newcommand{\clab}[2][]{
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\protected@write\@auxout{\let\clab\@secondoftwo}{
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\string\newlabel{r:#1}{{#2}{}}}%
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\hlabel{#1}#2\hlabel{#1end}}
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\makeatother
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\newcommand{\zhypera}[1]{\href[pdfnewwindow]{\msname.pdf\##1}{\\[1ex]\textbf{Page \zpageref{#1}, Line
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\zref{line:#1}--\zref{line:#1end}:}\\}}
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\newcommand{\cref}[1]{\begin{refquote}\zhypera{#1}{\zref{r:#1}}\\[-0.5ex]\end{refquote}}
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% \newenvironment{ra}[1][\unskip]{\par \noindent \\[-1ex] \textbf{Response/Action:}\par\bf}{\ \\}
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\renewenvironment{quote}{\begin{question}}{\end{question}}
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% \renewenvironment{verbatim}{\begin{ra}}{\end{ra}}
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% -----------------
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% Title block stuff
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% -----------------
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% Title
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\makeatletter
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\renewcommand{\title}[1]{\gdef\@title{\large\textbf{#1}}} % Adjust \Huge or other font commands
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\makeatother
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% ------------------
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% Section headings
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% ------------------
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\usepackage{titlesec}
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\titleformat*{\section}{\Large\sffamily\bfseries\raggedright}
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\titleformat*{\subsection}{\large\sffamily\bfseries\raggedright}
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\titleformat*{\subsubsection}{\normalsize\sffamily\bfseries\raggedright}
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\titleformat*{\paragraph}{\small\sffamily\bfseries\raggedright}
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%\titlespacing{<command>}{<left>}{<before-sep>}{<after-sep>}
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% Starred version removes indentation in following paragraph
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\titlespacing*{\section}{0em}{2em}{0.1em}
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\titlespacing*{\subsection}{0em}{1.25em}{0.1em}
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\titlespacing*{\subsubsection}{0em}{0.75em}{0em}
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% ------------------
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% Headers/Footers
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||||||
% ------------------
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% \usepackage{fancyhdr}
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% \pagestyle{fancy}
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% \fancyhf{}
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||||||
% \fancyhead[L,C,R]{}
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||||||
% \fancyfoot[L,C]{}
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% \fancyfoot[R]{\thepage}
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% \renewcommand{\headrulewidth}{1pt}
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% \fancypagestyle{plain}{%
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|
||||||
% \renewcommand{\headrulewidth}{0pt}%
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||||||
% \fancyhf{}%
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||||||
% \fancyfoot[R]{\thepage}%
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||||||
% }
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||||||
% \renewcommand\footnoterule{\rule{\linewidth}{0.1pt}\vspace{5pt}}
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% ------------------
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|
||||||
% Captions
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|
||||||
% ------------------
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\usepackage[labelfont=bf,labelsep=period]{caption}
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\captionsetup[figure]{font=footnotesize,justification=raggedright,singlelinecheck=false,format=hang}
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||||||
% ---------------------------
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||||||
% END CUSTOM PREAMBLE STUFF
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||||||
% ---------------------------
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\usepackage{endfloat}
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\doublespacing
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\linenumbers
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\makeatletter
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\@ifpackageloaded{float}{}{\usepackage{float}}
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\floatstyle{plain}
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||||||
\@ifundefined{c@chapter}{\newfloat{sfg}{h}{lost}}{\newfloat{sfg}{h}{lost}[chapter]}
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\floatname{sfg}{Supplementary Fig.}
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\newcommand*\listofsfgs{\listof{sfg}{List of Supplementary Figures}}
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\makeatother
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\makeatletter
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\@ifpackageloaded{float}{}{\usepackage{float}}
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\floatstyle{plain}
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||||||
\@ifundefined{c@chapter}{\newfloat{stb}{h}{lost}}{\newfloat{stb}{h}{lost}[chapter]}
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\floatname{stb}{Supplementary Table}
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\newcommand*\listofstbs{\listof{stb}{List of Supplementary Tables}}
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\makeatother
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\makeatletter
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||||||
\@ifpackageloaded{float}{}{\usepackage{float}}
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\floatstyle{plain}
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||||||
\@ifundefined{c@chapter}{\newfloat{seq}{h}{lost}}{\newfloat{seq}{h}{lost}[chapter]}
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|
||||||
\floatname{seq}{Supplementary Eq.}
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\newcommand*\listofseqs{\listof{seq}{List of Supplementary Equations}}
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\makeatother
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\makeatletter
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||||||
\@ifpackageloaded{float}{}{\usepackage{float}}
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\floatstyle{plain}
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\@ifundefined{c@chapter}{\newfloat{rfg}{h}{lost}}{\newfloat{rfg}{h}{lost}[chapter]}
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\floatname{rfg}{Fig. R}
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||||||
\newcommand*\quartorfgref[1]{Fig. \hyperref[#1]{R\ref{#1}}}
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\@ifpackageloaded{caption}{}{\usepackage{caption}}
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||||||
\DeclareCaptionLabelFormat{quartorfgreflabelformat}{#1#2}
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|
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\captionsetup[rfg]{labelformat=quartorfgreflabelformat}
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\newcommand*\listofrfgs{\listof{rfg}{List of Revision Figures}}
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\makeatother
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\makeatletter
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|
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\@ifpackageloaded{float}{}{\usepackage{float}}
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\floatstyle{plain}
|
|
||||||
\@ifundefined{c@chapter}{\newfloat{rtb}{h}{lost}}{\newfloat{rtb}{h}{lost}[chapter]}
|
|
||||||
\floatname{rtb}{Table R}
|
|
||||||
\newcommand*\quartortbref[1]{Table \hyperref[#1]{R\ref{#1}}}
|
|
||||||
\@ifpackageloaded{caption}{}{\usepackage{caption}}
|
|
||||||
\DeclareCaptionLabelFormat{quartortbreflabelformat}{#1#2}
|
|
||||||
\captionsetup[rtb]{labelformat=quartortbreflabelformat}
|
|
||||||
\newcommand*\listofrtbs{\listof{rtb}{List of Revision Tables}}
|
|
||||||
\makeatother
|
|
||||||
\makeatletter
|
|
||||||
\@ifpackageloaded{float}{}{\usepackage{float}}
|
|
||||||
\floatstyle{plain}
|
|
||||||
\@ifundefined{c@chapter}{\newfloat{req}{h}{lost}}{\newfloat{req}{h}{lost}[chapter]}
|
|
||||||
\floatname{req}{Eq R}
|
|
||||||
\newcommand*\quartoreqref[1]{Eq \hyperref[#1]{R\ref{#1}}}
|
|
||||||
\@ifpackageloaded{caption}{}{\usepackage{caption}}
|
|
||||||
\DeclareCaptionLabelFormat{quartoreqreflabelformat}{#1#2}
|
|
||||||
\captionsetup[req]{labelformat=quartoreqreflabelformat}
|
|
||||||
\newcommand*\listofreqs{\listof{req}{List of Revision Equations}}
|
|
||||||
\makeatother
|
|
||||||
\makeatletter
|
|
||||||
\@ifpackageloaded{caption}{}{\usepackage{caption}}
|
|
||||||
\AtBeginDocument{%
|
|
||||||
\ifdefined\contentsname
|
|
||||||
\renewcommand*\contentsname{Table of contents}
|
|
||||||
\else
|
|
||||||
\newcommand\contentsname{Table of contents}
|
|
||||||
\fi
|
|
||||||
\ifdefined\listfigurename
|
|
||||||
\renewcommand*\listfigurename{List of Figures}
|
|
||||||
\else
|
|
||||||
\newcommand\listfigurename{List of Figures}
|
|
||||||
\fi
|
|
||||||
\ifdefined\listtablename
|
|
||||||
\renewcommand*\listtablename{List of Tables}
|
|
||||||
\else
|
|
||||||
\newcommand\listtablename{List of Tables}
|
|
||||||
\fi
|
|
||||||
\ifdefined\figurename
|
|
||||||
\renewcommand*\figurename{Fig.}
|
|
||||||
\else
|
|
||||||
\newcommand\figurename{Fig.}
|
|
||||||
\fi
|
|
||||||
\ifdefined\tablename
|
|
||||||
\renewcommand*\tablename{Table}
|
|
||||||
\else
|
|
||||||
\newcommand\tablename{Table}
|
|
||||||
\fi
|
|
||||||
}
|
|
||||||
\@ifpackageloaded{float}{}{\usepackage{float}}
|
|
||||||
\floatstyle{ruled}
|
|
||||||
\@ifundefined{c@chapter}{\newfloat{codelisting}{h}{lop}}{\newfloat{codelisting}{h}{lop}[chapter]}
|
|
||||||
\floatname{codelisting}{Listing}
|
|
||||||
\newcommand*\listoflistings{\listof{codelisting}{List of Listings}}
|
|
||||||
\captionsetup{labelsep=colon}
|
|
||||||
\makeatother
|
|
||||||
\makeatletter
|
|
||||||
\makeatother
|
|
||||||
\makeatletter
|
|
||||||
\@ifpackageloaded{caption}{}{\usepackage{caption}}
|
|
||||||
\@ifpackageloaded{subcaption}{}{\usepackage{subcaption}}
|
|
||||||
\makeatother
|
|
||||||
\usepackage{bookmark}
|
|
||||||
\IfFileExists{xurl.sty}{\usepackage{xurl}}{} % add URL line breaks if available
|
|
||||||
\urlstyle{same}
|
|
||||||
\hypersetup{
|
|
||||||
pdftitle={MANUSCRIPT TITLE},
|
|
||||||
pdfauthor={, , and },
|
|
||||||
pdflang={en},
|
|
||||||
colorlinks=true,
|
|
||||||
linkcolor={blue},
|
|
||||||
filecolor={Maroon},
|
|
||||||
citecolor={Blue},
|
|
||||||
urlcolor={blue},
|
|
||||||
pdfcreator={LaTeX via pandoc}}
|
|
||||||
|
|
||||||
|
|
||||||
\title{MANUSCRIPT TITLE}
|
|
||||||
\author{\footnotesize Xxxxx
|
|
||||||
Yyyy\textsuperscript{a,\#} \and \footnotesize Ming
|
|
||||||
Su\textsuperscript{\orcidlink{0000000198211268},a,b,\#,*} \and \footnotesize Min
|
|
||||||
Yang\textsuperscript{a,b,*}}
|
|
||||||
\date{}
|
|
||||||
\begin{document}
|
|
||||||
|
|
||||||
% for some reason this does not work in header
|
|
||||||
\renewcommand{\abstractname}{Abstract.}
|
|
||||||
|
|
||||||
% add the short title to the fancy header
|
|
||||||
|
|
||||||
\maketitle
|
|
||||||
%\noindent \rule{\linewidth}{.5pt}
|
|
||||||
%\noindent \rule{\linewidth}{.5pt}
|
|
||||||
|
|
||||||
|
|
||||||
\textsuperscript{\#} These authors contributed equally to this work.
|
|
||||||
|
|
||||||
\textsuperscript{a} Key Laboratory of Environmental Aguatic Chemistry,
|
|
||||||
State Key Laboratory of Regional Environment and Sustainability,
|
|
||||||
Research Center for Eco-Environmental Sciences, Chinese Academy of
|
|
||||||
Sciences, Beijing 100085, China.\\
|
|
||||||
\textsuperscript{b} University of Chinese Academy of Sciences, Beijing
|
|
||||||
100049, China.
|
|
||||||
|
|
||||||
\textsuperscript{*} Corresponding to:
|
|
||||||
\href{mailto:mingsu@rcees.ac.cn}{Ming Su (mingsu@rcees.ac.cn)},
|
|
||||||
\href{mailto:yangmin@rcees.ac.cn}{Min Yang (yangmin@rcees.ac.cn)}
|
|
||||||
|
|
||||||
\newpage{}
|
|
||||||
|
|
||||||
\section*{Abstract}\label{abstract}
|
|
||||||
\addcontentsline{toc}{section}{Abstract}
|
|
||||||
|
|
||||||
\newpage{}
|
|
||||||
|
|
||||||
\section{Main}\label{main}
|
|
||||||
|
|
||||||
\section{Methods}\label{methods}
|
|
||||||
|
|
||||||
\section{Results}\label{results}
|
|
||||||
|
|
||||||
\newpage{}
|
|
||||||
|
|
||||||
\section*{References}\label{references}
|
|
||||||
\addcontentsline{toc}{section}{References}
|
|
||||||
|
|
||||||
\phantomsection\label{refs}
|
|
||||||
|
|
||||||
\newpage{}
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
\end{document}
|
|
||||||
@@ -1,2 +1,5 @@
|
|||||||
# Main
|
# Main
|
||||||
|
|
||||||
|
This is a nice paragraph. [This is something useful according to Reviewer 1.]{.clab options="r1q0101"}
|
||||||
|
|
||||||
|
Figure from SM.pdf, see `r zref("sfg-demo")`.
|
||||||
|
|||||||
@@ -2,7 +2,7 @@
|
|||||||
subtitle: "Revision Note"
|
subtitle: "Revision Note"
|
||||||
msname: MS
|
msname: MS
|
||||||
smname: SM
|
smname: SM
|
||||||
# date: last-modified
|
isRN: true
|
||||||
bibliography: [../BB/Ref.bib, ../BB/localRef.bib]
|
bibliography: [../BB/Ref.bib, ../BB/localRef.bib]
|
||||||
csl: _extensions/drwater/dwinst/nature.csl
|
csl: _extensions/drwater/dwinst/nature.csl
|
||||||
format:
|
format:
|
||||||
@@ -10,16 +10,10 @@ format:
|
|||||||
dwms-docx: default
|
dwms-docx: default
|
||||||
dwms-pdf:
|
dwms-pdf:
|
||||||
number-sections: true
|
number-sections: true
|
||||||
latex-clean: true
|
|
||||||
header-includes:
|
|
||||||
- \renewcommand{\thetable}{R\arabic{table}}
|
|
||||||
- \renewcommand{\thefigure}{R\arabic{figure}}
|
|
||||||
- \renewcommand{\theequation}{R\arabic{equation}}
|
|
||||||
- \renewcommand{\figurename}{Figure}
|
|
||||||
- \renewcommand{\tablename}{Table}
|
|
||||||
filters:
|
filters:
|
||||||
- latex-environment
|
- latex-environment
|
||||||
- authoraffil
|
- authoraffil
|
||||||
|
lightbox: auto
|
||||||
---
|
---
|
||||||
|
|
||||||
```{r}
|
```{r}
|
||||||
@@ -44,7 +38,7 @@ Thank you.
|
|||||||
|
|
||||||
# Reviewer #1:
|
# Reviewer #1:
|
||||||
|
|
||||||
> 0. COMMENT 1
|
> 0. COMMENT 0
|
||||||
|
|
||||||
**Response/Action:**
|
**Response/Action:**
|
||||||
|
|
||||||
@@ -52,3 +46,29 @@ Thank you very much for your revision. We made changes as shown below.
|
|||||||
|
|
||||||
`r cref("r1q0101")`
|
`r cref("r1q0101")`
|
||||||
|
|
||||||
|
|
||||||
|
> 1. COMMENT 1
|
||||||
|
|
||||||
|
**Response/Action:**
|
||||||
|
|
||||||
|
Thank you very much for your revision. We added a figure like below.
|
||||||
|
|
||||||
|
::: {#rfg-figr1}
|
||||||
|
|
||||||
|
```{r}
|
||||||
|
plot(1)
|
||||||
|
```
|
||||||
|
Figure in RN to clarify.
|
||||||
|
:::
|
||||||
|
|
||||||
|
# Reviewer #2
|
||||||
|
|
||||||
|
> 1. COMMENT 1
|
||||||
|
|
||||||
|
|
||||||
|
**Response/Action:**
|
||||||
|
|
||||||
|
Thank you very much for your revision. We made changes as shown below.
|
||||||
|
|
||||||
|
|
||||||
|
`r cref("r2q0101")`
|
||||||
|
|||||||
@@ -6,6 +6,13 @@
|
|||||||
\providecommand*\HyPL@Entry[1]{}
|
\providecommand*\HyPL@Entry[1]{}
|
||||||
\HyPL@Entry{0<</S/D>>}
|
\HyPL@Entry{0<</S/D>>}
|
||||||
\babel@aux{english}{}
|
\babel@aux{english}{}
|
||||||
|
\@writefile{toc}{\contentsline {section}{Supplementary Fig.~\ref {sfg-demo}}{3}{Doc-Start}\protected@file@percent }
|
||||||
|
\newlabel{sfg-demo}{{}{3}{\texorpdfstring {Supplementary Fig.~\ref {sfg-demo}}{Supplementary Fig.~}}{Doc-Start}{}}
|
||||||
|
\newlabel{r:r2q0101}{{A new supplementary figure.}{}}
|
||||||
|
\newlabel{r2q0101}{{}{3}{\texorpdfstring {Supplementary Fig.~\ref {sfg-demo}}{Supplementary Fig.~}}{Doc-Start}{}}
|
||||||
|
\newlabel{r2q0101end}{{}{3}{\texorpdfstring {Supplementary Fig.~\ref {sfg-demo}}{Supplementary Fig.~}}{Doc-Start}{}}
|
||||||
|
\newlabel{line:r2q0101}{{14}{3}{}{}{}}
|
||||||
|
\newlabel{line:r2q0101end}{{14}{3}{}{}{}}
|
||||||
\@writefile{lost}{\contentsline {sfg}{\numberline {1}{\ignorespaces Caption of demo figure}}{3}{sfg.1}\protected@file@percent }
|
\@writefile{lost}{\contentsline {sfg}{\numberline {1}{\ignorespaces Caption of demo figure}}{3}{sfg.1}\protected@file@percent }
|
||||||
\newlabel{sfg-demo}{{1}{3}{Caption of demo figure}{sfg.1}{}}
|
\newlabel{sfg-demo}{{1}{3}{Caption of demo figure}{sfg.1}{}}
|
||||||
\gdef \@abspage@last{3}
|
\gdef \@abspage@last{3}
|
||||||
|
|||||||
@@ -1,27 +1,24 @@
|
|||||||
---
|
---
|
||||||
msname: MS
|
msname: MS
|
||||||
smname: SM
|
smname: SM
|
||||||
bibliography: [../BB/Ref.bib, ../BB/localRef.bib]
|
isSM: true
|
||||||
csl: _extensions/drwater/dwinst/nature.csl
|
# bibliography: [../BB/Ref.bib, ../BB/localRef.bib]
|
||||||
|
# csl: _extensions/drwater/dwinst/nature.csl
|
||||||
subtitle: "Supplementary Information"
|
subtitle: "Supplementary Information"
|
||||||
date: ""
|
date: ""
|
||||||
|
keep-tex: true
|
||||||
|
latex-clean: false # to keep aux
|
||||||
|
linenumber: true
|
||||||
format:
|
format:
|
||||||
dwms-html: default
|
dwms-html: default
|
||||||
dwms-docx: default
|
dwms-docx: default
|
||||||
dwms-pdf:
|
dwms-pdf:
|
||||||
latex-clean: false # to keep aux
|
toc: false # 手动设置了
|
||||||
keep-md: false
|
|
||||||
keep-tex: true
|
|
||||||
header-includes:
|
|
||||||
- \doublespacing
|
|
||||||
- \linenumbers
|
|
||||||
- \let\oldsection\section
|
|
||||||
- \renewcommand{\section}{\clearpage\oldsection}
|
|
||||||
- \let\oldsubsection\subsection
|
|
||||||
- \renewcommand{\subsection}{\clearpage\oldsubsection}
|
|
||||||
filters:
|
filters:
|
||||||
- latex-environment
|
- latex-environment
|
||||||
- authoraffil
|
- authoraffil
|
||||||
|
lightbox: auto
|
||||||
|
commands: [clab]
|
||||||
---
|
---
|
||||||
|
|
||||||
\thispagestyle{empty}
|
\thispagestyle{empty}
|
||||||
@@ -39,11 +36,9 @@ require(drwateR)
|
|||||||
rmdify::rmd_init()
|
rmdify::rmd_init()
|
||||||
```
|
```
|
||||||
|
|
||||||
|
|
||||||
Figures and/or tables are provided below as the supplementary evidences to the main text.
|
Figures and/or tables are provided below as the supplementary evidences to the main text.
|
||||||
|
|
||||||
{{< pagebreak >}}
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
```{=latex}
|
```{=latex}
|
||||||
\clearpage
|
\clearpage
|
||||||
@@ -54,9 +49,9 @@ Figures and/or tables are provided below as the supplementary evidences to the m
|
|||||||
}
|
}
|
||||||
```
|
```
|
||||||
|
|
||||||
|
# [@sfg-demo]
|
||||||
|
|
||||||
{{< pagebreak >}}
|
[A new supplementary figure.]{.clab options="r2q0101"}
|
||||||
|
|
||||||
|
|
||||||
::: {#sfg-demo}
|
::: {#sfg-demo}
|
||||||
|
|
||||||
|
|||||||
Binary file not shown.
+1
-1
Submodule _extensions/drwater updated: 5c1144f28b...7870d6b57b
+1
-1
@@ -137,7 +137,7 @@ project:
|
|||||||
- MS/RP.qmd
|
- MS/RP.qmd
|
||||||
- TC/index.qmd
|
- TC/index.qmd
|
||||||
- SD/
|
- SD/
|
||||||
# - MS/RN.qmd
|
- MS/RN.qmd
|
||||||
# - MS/AC.qmd
|
# - MS/AC.qmd
|
||||||
- RP/
|
- RP/
|
||||||
website:
|
website:
|
||||||
|
|||||||
@@ -13,7 +13,33 @@ dwfun::ggsavep("./figures/GA20240729.pdf", loadit = TRUE)
|
|||||||
|
|
||||||
```{r}
|
```{r}
|
||||||
#| echo: false
|
#| echo: false
|
||||||
|
#| cache: false
|
||||||
#| output: asis
|
#| output: asis
|
||||||
cat(system("grep '^abstract: ' ./MS/MS.qmd | sed -e 's/^abstract: \"*\\(.*\\).$/\\1/g'", intern = TRUE))
|
# function
|
||||||
|
extract_abstract <- function(file) {
|
||||||
|
content <- readLines(file, warn = FALSE)
|
||||||
|
abstract_line <- grep("^# Abstract[^:]", content, ignore.case = TRUE)[1]
|
||||||
|
if (length(abstract_line) == 0) return(NA)
|
||||||
|
start <- abstract_line + 1
|
||||||
|
while (start <= length(content) && trimws(content[start]) == "") {
|
||||||
|
start <- start + 1
|
||||||
|
}
|
||||||
|
if (start > length(content)) return(NA)
|
||||||
|
end <- start
|
||||||
|
while (
|
||||||
|
end <= length(content) &&
|
||||||
|
trimws(content[end]) != "" &&
|
||||||
|
!grepl("^#", content[end])
|
||||||
|
) {
|
||||||
|
end <- end + 1
|
||||||
|
}
|
||||||
|
paste(content[start:(end - 1)], collapse = " ")
|
||||||
|
}
|
||||||
|
# extract
|
||||||
|
file <- "./MS/MS.qmd"
|
||||||
|
abstract <- rmarkdown::yaml_front_matter(file)$abstract
|
||||||
|
if (is.null(abstract)) {
|
||||||
|
abstract <- extract_abstract(file)
|
||||||
|
}
|
||||||
|
cat(abstract)
|
||||||
```
|
```
|
||||||
|
|
||||||
|
|||||||
Reference in New Issue
Block a user