render compile

MS/MS.aux

@@ -19,9 +19,9 @@
 \newlabel{r1q0101end}{{1}{1}{Introduction}{section.1}{}}
 \newlabel{line:r1q0101}{{10}{1}{}{}{}}
 \newlabel{line:r1q0101end}{{10}{1}{}{}{}}
+\@writefile{toc}{\contentsline {section}{\numberline {2}Materials and methods}{1}{section.2}\protected@file@percent }
+\newlabel{materials-and-methods}{{2}{1}{Materials and methods}{section.2}{}}
 \bibdata{../BB/Ref.bib,../BB/localRef.bib}
-\@writefile{toc}{\contentsline {section}{\numberline {2}Materials and methods}{2}{section.2}\protected@file@percent }
-\newlabel{materials-and-methods}{{2}{2}{Materials and methods}{section.2}{}}
 \@writefile{toc}{\contentsline {section}{\numberline {3}Results}{2}{section.3}\protected@file@percent }
 \newlabel{results}{{3}{2}{Results}{section.3}{}}
 \@writefile{toc}{\contentsline {section}{\numberline {4}Discussion}{2}{section.4}\protected@file@percent }

MS/MS.html.md

@@ -99,6 +99,8 @@ Blabla. [Bla blaBla blaBla blaBla blaBla bla     Bla bla.]{.clab options=r1q0101
 
 # Materials and methods
 
+To cite a figure in `SM.qmd`, use this syntax: Fig. S`!!TODO KEY ERROR: sfg-demofigWAS NOT FOUND!.
+
 # Results
 
 # Discussion

MS/SM.tex

@@ -360,9 +360,7 @@ to the main text.
 
 \centering{
 
-\begin{verbatim}
+\includegraphics[width=0.6\linewidth,height=\textheight,keepaspectratio]{../figures/demofigure.pdf}
-#> NULL
-\end{verbatim}
 
 }