This commit is contained in:
2025-04-09 22:28:17 +08:00
parent 6412cc5560
commit 9ecb11b788
28 changed files with 5215 additions and 243 deletions

View File

@@ -14,8 +14,10 @@ format: html
# 下载至临时文件
if (FALSE) {
tmpxlsxpath <- file.path(tempdir(), "airquality.xlsx")
download.file("https://git.drwater.net/course/RWEP/raw/branch/PUB/data/airquality.xlsx",
destfile = tmpxlsxpath)
download.file(
"https://git.drwater.net/course/RWEP/raw/branch/PUB/data/airquality.xlsx",
destfile = tmpxlsxpath
)
airqualitydf <- readxl::read_xlsx(tmpxlsxpath, sheet = 2)
metadf <- readxl::read_xlsx(tmpxlsxpath, sheet = 1)
saveRDS(airqualitydf, "./airqualitydf.RDS")
@@ -41,7 +43,12 @@ airqualitydf |>
left_join(metadf |> select(site, city = Area)) |>
group_by(city) |>
filter(n() > 5) |>
summarize(p = sum(AQI.median < quantile(airqualitydf$AQI, probs = 0.5, na.rm = TRUE)) / n()) |>
summarize(
p = sum(
AQI.median < quantile(airqualitydf$AQI, probs = 0.5, na.rm = TRUE)
) /
n()
) |>
top_n(10, p)
@@ -57,12 +64,11 @@ airqualitydf |>
left_join(metadf |> select(site, city = Area)) |>
group_by(city) |>
filter(length(unique(site)) >= 5) |>
summarize(p = sum(AQI < quantile(airqualitydf$AQI, probs = 0.2,
na.rm = TRUE)) / n()) |>
summarize(
p = sum(AQI < quantile(airqualitydf$AQI, probs = 0.2, na.rm = TRUE)) / n()
) |>
slice_max(p, n = 10) |>
knitr::kable()
knitr::kable()
```
@@ -83,70 +89,86 @@ if (FALSE) {
left_join(metadf |> select(site, city = Area)) |>
group_by(city) |>
filter(length(unique(site)) >= 5) |>
mutate(dayornight = factor(ifelse(between(hour(datetime), 8, 20), "day", "night"),
levels = c("day", "night"))
mutate(
dayornight = factor(
ifelse(between(hour(datetime), 8, 20), "day", "night"),
levels = c("day", "night")
)
) |>
group_by(city) |>
nest(citydf = -city) |>
mutate(median_diff = purrr::map_dbl(citydf, ~
.x |>
specify(AQI ~ dayornight) |>
calculate(stat = "diff in medians", order = c("day", "night")) |>
pull(stat)
)) |>
mutate(
median_diff = purrr::map_dbl(
citydf,
~ .x |>
specify(AQI ~ dayornight) |>
calculate(stat = "diff in medians", order = c("day", "night")) |>
pull(stat)
)
) |>
ungroup() |>
# slice_sample(n = 12) |>
mutate(null_dist = purrr::map(citydf, ~
.x |>
specify(AQI ~ dayornight) |>
hypothesize(null = "independence") |>
generate(reps = 1000, type = "permute") |>
calculate(stat = "diff in medians", order = c("day", "night"))
)) |>
mutate(p_value = purrr::map2_dbl(null_dist, median_diff,
~ get_p_value(.x, obs_stat = .y, direction = "both") |>
pull(p_value)
)) |>
mutate(
null_dist = purrr::map(
citydf,
~ .x |>
specify(AQI ~ dayornight) |>
hypothesize(null = "independence") |>
generate(reps = 1000, type = "permute") |>
calculate(stat = "diff in medians", order = c("day", "night"))
)
) |>
mutate(
p_value = purrr::map2_dbl(
null_dist,
median_diff,
~ get_p_value(.x, obs_stat = .y, direction = "both") |>
pull(p_value)
)
) |>
mutate(sigdiff = ifelse(p_value < 0.01, "显著差异", "无显著差异")) |>
mutate(fig = purrr::pmap(list(null_dist, median_diff, city, sigdiff),
~ visualize(..1) +
shade_p_value(obs_stat = ..2, direction = "both") +
ggtitle(paste0(..3, "", ..4)) +
theme_sci(2, 2)
)) |>
mutate(
fig = purrr::pmap(
list(null_dist, median_diff, city, sigdiff),
~ visualize(..1) +
shade_p_value(obs_stat = ..2, direction = "both") +
ggtitle(paste0(..3, "", ..4)) +
theme_sci(2, 2)
)
) |>
arrange(p_value)
saveRDS(testdf, "./testdf.RDS")
}
if (FALSE) {
lang <- "cn"
require(dwfun)
require(rmdify)
require(drwateR)
dwfun::init()
rmdify::rmd_init()
lang <- "cn"
require(dwfun)
require(rmdify)
require(drwateR)
dwfun::init()
rmdify::rmd_init()
testdf <- readRDS("./testdf.RDS")
require(tidyverse)
testdf |>
select(city, median_diff, p_value, sigdiff) |>
knitr::kable()
testdf |>
mutate(grp = (row_number() - 1)%/% 12) |>
group_by(grp) |>
nest(grpdf = -grp) |>
ungroup() |>
# slice(1) |>
mutate(gp = purrr::map(grpdf,
~(.x |>
pull(fig)) |>
patchwork::wrap_plots(ncol = 3) +
dwfun::theme_sci(5, 7))) |>
pull(gp)
testdf <- readRDS("./testdf.RDS")
require(tidyverse)
testdf |>
select(city, median_diff, p_value, sigdiff) |>
knitr::kable()
testdf |>
mutate(grp = (row_number() - 1) %/% 12) |>
group_by(grp) |>
nest(grpdf = -grp) |>
ungroup() |>
# slice(1) |>
mutate(
gp = purrr::map(
grpdf,
~ (.x |>
pull(fig)) |>
patchwork::wrap_plots(ncol = 3) +
dwfun::theme_sci(5, 7)
)
) |>
pull(gp)
}
```