add extensions
This commit is contained in:
328
_extensions/inst/css/revealjs.css
Normal file
328
_extensions/inst/css/revealjs.css
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||||
:root {
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--r-background-color: #fff;
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--r-main-font: Source Sans Pro, simhei, microsoft yahei;
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--r-main-font-size: 32px;
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--r-main-color: #222;
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--r-block-margin: 12px;
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--r-heading-margin: 0 0 12px 0;
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--r-heading-font: Source Sans Pro, microsoft yahei, simhei;
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||||
--r-heading-color: #0c4c8a;
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--r-heading-line-height: 1.2em;
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--r-heading-letter-spacing: normal;
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--r-heading-text-transform: none;
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--r-heading-text-shadow: none;
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--r-heading-font-weight: 900;
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--r-heading1-text-shadow: none;
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--r-heading1-size: 2.5em;
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--r-heading2-size: 1.6em;
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--r-heading3-size: 1.3em;
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--r-heading4-size: 1em;
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--r-code-font: SFMono-Regular, Menlo, Monaco, Consolas, Liberation Mono,
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Courier New, monospace;
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--r-link-color: #ef562d;
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--r-link-color-dark: #ef562d;
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--r-link-color-hover: #d13076;
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--r-selection-background-color: #98bdef;
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--r-selection-color: #fff;
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--quarto-hl-fu-color: #c53800;
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}
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.reveal .title-slide h1 {
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text-align: center;
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line-height: var(--r-heading-line-height);
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}
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section#title-slide p.author,
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section#title-slide p.institute,
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section#title-slide p.date {
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font-size: var(--r-heading2-size);
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color: gray;
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}
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section#title-slide h1.title:after {
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content: " ";
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display: block;
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border: 3px solid;
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border-image: linear-gradient(to right, white, var(--r-heading-color), white)
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1;
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border-radius: 1px;
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}
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section#title-slide p.subtitle {
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font-size: var(--r-heading3-size);
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text-decoration: underline;
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color: gray;
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}
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section#title-slide a {
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color: gray;
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}
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.reveal .slide-number a {
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color: #bbbbbb;
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font-size: 10pt;
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}
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section#title-slide a:hover {
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color: var(--r-link-color-hover);
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}
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.reveal[data-navigation-mode="linear"] .title-slide h1 {
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font-size: var(--r-heading2-size);
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}
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section#TOC {
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vertical-align: middle;
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text-align: center;
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}
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section#TOC h2 {
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font-size: var(--r-heading2-size);
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font-weight: bold;
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text-align: center;
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}
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section#TOC h2:after {
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content: " ";
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display: block;
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border: 3px solid;
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border-image: linear-gradient(to right, white, var(--r-heading-color), white)
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1;
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border-radius: 1px;
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}
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section#TOC ul {
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text-align: left;
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vertical-align: middle;
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margin-top: 3em;
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line-height: 1.6em;
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}
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section#TOC ol li {
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font-size: var(--r-heading3-size);
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font-weight: bold;
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color: gray;
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list-style-type: number;
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line-height: 1.6em;
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}
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section#TOC strong,
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section#TOC b {
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color: black;
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}
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section#TOC ul li {
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font-size: var(--r-heading3-size);
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font-weight: bold;
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color: gray;
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list-style-type: circle;
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line-height: 1.6em;
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}
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section#TOC a {
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color: black;
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}
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section#TOC a:hover {
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color: var(--r-link-color-hover);
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}
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.reveal h2 {
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text-align: left;
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margin-top: 0px;
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line-height: var(--r-heading-line-height);
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}
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.reveal .title-slide h1:after {
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content: " ";
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display: block;
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border: 3px solid;
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border-image: linear-gradient(to right, white, var(--r-heading-color), white)
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1;
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border-radius: 1px;
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}
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.reveal h2:after {
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content: " ";
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display: block;
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border: 3px solid;
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border-image: linear-gradient(to right, var(--r-heading-color), white) 1;
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border-radius: 1px;
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}
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.reveal ul {
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list-style-type: circle;
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}
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.reveal ul li {
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line-height: 1.2em;
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}
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.reveal .thank h2 {
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font-size: var(--r-heading1-size);
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line-height: var(--r-heading-line-height);
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}
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.reveal .thank {
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text-align: center;
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}
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.reveal .thank h2:after {
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content: " ";
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display: block;
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border: 3px solid;
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border-image: linear-gradient(to right, white, var(--r-heading-color), white)
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1;
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border-radius: 1px;
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}
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.panel-tabset [role="tab"] {
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border-bottom: 1px solid red;
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}
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.panel-tabset [role="tab"][aria-selected="true"] {
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background-color: #ffdddd;
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border-bottom: 1px solid red;
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}
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.white {
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color: #ffffff;
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}
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.orange {
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color: #e09a25;
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}
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.green {
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color: #006e51;
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}
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.pink {
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color: #d13076;
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}
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.dusty {
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color: #ad5d5d;
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}
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.flame {
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color: #ef562d;
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}
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.kale {
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color: #5c7148;
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}
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.blue {
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color: #0c4c8a;
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}
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.red {
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color: #b93a32;
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}
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.clay {
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color: #9e4624;
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}
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.bodacious {
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color: #b76ba3;
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}
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.serenity {
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color: #91a8d0;
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}
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.cognac {
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color: #60413c;
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}
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.sangria {
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color: #760030;
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}
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.alumium {
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color: #75796a;
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}
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.marsala {
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color: #964f4c;
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}
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.purple {
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color: #702fa8;
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}
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.blank {
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background-color: "Yellow";
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width: 100%;
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color: red;
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}
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.reveal .slide aside {
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position: absolute;
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margin: 0 auto;
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left: 2%;
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font-size: 0.7em;
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text-align: end;
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max-width: 90%;
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width: fit-content;
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color: gray;
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bottom: -6%;
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}
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.ref {
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position: absolute;
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margin: 0 auto;
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right: 2%;
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font-size: 1em;
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text-align: end;
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max-width: 90%;
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width: fit-content;
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color: gray;
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bottom: -6%;
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}
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.con {
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position: absolute;
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margin: 0 auto;
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font-size: 1.4em;
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text-align: center;
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font-family: inherit;
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max-width: 100%;
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width: fit-content;
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color: #023047;
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bottom: -2%;
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}
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.center {
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text-align: center;
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}
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.tiny {
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font-size: 60%;
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}
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figure > figcaption {
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margin-top: -0.5em;
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}
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.reveal .slide figure > figcaption,
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.reveal .slide img.stretch + p.caption,
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.reveal .slide img.r-stretch + p.caption {
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font-size: 0.9em;
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text-align: center;
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}
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.reveal strong, .reveal b {
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font-weight: bold;
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color: crimson;
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}
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.reveal pre code {
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background-color: #554433;
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line-height: 1.2em;
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color: #fff;
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font-size: x-large;
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}
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section#title-slide p.subtitle {
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font-size: var(--r-heading3-size);
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text-decoration: none;
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color: gray;
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}
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.reveal div.sourceCode pre code {
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background-color: #002233;
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min-height: 100%;
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||||
font-size: x-large;
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}
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126
_extensions/inst/css/style.css
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126
_extensions/inst/css/style.css
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.udot {
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text-decoration-line: underline;
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text-decoration-color: rgb(50, 50, 50);
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text-decoration-style: dashed;
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text-decoration-thickness: 1px;
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}
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.good {
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background-color: forestgreen;
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color: lightyellow;
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}
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.bad {
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background-color: orangered;
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color: lightyellow;
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}
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.del {
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/* text-decoration-color: rgb(222 13 13); */
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text-decoration: line-through;
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background-color: rgba(255, 0, 0, 0.2);
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text-decoration-style: initial;
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text-decoration-thickness: 1.5px;
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||||
}
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||||
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||||
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.todo {
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background-color: darkorange;
|
||||
color: lightyellow;
|
||||
}
|
||||
|
||||
.com {
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||||
background-color: #0025ff;
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||||
font-weight: bold;
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||||
color: lightyellow;
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||||
}
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||||
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.add .ins {
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||||
text-decoration: underline;
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||||
background-color: rgba(0, 128, 0, 0.2);
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/* text-decoration-color: rgb(222 13 13); */
|
||||
background-color: violet;
|
||||
text-decoration-style: initial;
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||||
text-decoration-thickness: 2px;
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||||
}
|
||||
|
||||
|
||||
del {
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||||
text-decoration-line: line-through;
|
||||
text-decoration-color: rgb(222 13 13);
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text-decoration-style: initial;
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text-decoration-thickness: 1.0px;
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}
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||||
|
||||
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||||
ins {
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||||
text-decoration: underline;
|
||||
background-color: rgba(0, 128, 0, 0.2);
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||||
text-decoration-style: initial;
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||||
text-decoration-thickness: 2px;
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}
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||||
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.clab {
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background-color: rgb(255, 245, 240);
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}
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||||
.rem {
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||||
background-color: darkorange;
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||||
color: lightyellow;
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||||
text-decoration-thickness: 2px;
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||||
}
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||||
|
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#criticnav {
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position: fixed;
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||||
z-index: 1100;
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top: 0;
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||||
right: 0;
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||||
width: 120px;
|
||||
border-bottom: solid 1px #ffffff;
|
||||
margin: 0;
|
||||
padding: 10;
|
||||
background-color: rgb(143 38 38 / 95%);
|
||||
color: #ffffff;
|
||||
font-size: 12px;
|
||||
font-family: "Helvetica Neue", helvetica, arial, sans-serif !important
|
||||
}
|
||||
|
||||
#criticnav ul {
|
||||
list-style-type: none;
|
||||
width: 90%;
|
||||
margin: 0 auto;
|
||||
padding: 0
|
||||
}
|
||||
|
||||
#criticnav ul li {
|
||||
display: block;
|
||||
width: 100px;
|
||||
min-width: 80px;
|
||||
text-align: center;
|
||||
padding: 5px 0 3px !important;
|
||||
margin: 5px 2px !important;
|
||||
line-height: 1em;
|
||||
float: center;
|
||||
text-transform: uppercase;
|
||||
cursor: pointer;
|
||||
border-radius: 20px;
|
||||
border: 3px solid rgba(255,255,255,0);
|
||||
color: #fff !important
|
||||
}
|
||||
|
||||
.markup del {
|
||||
background-color: rgba(255, 0, 0, 0.2);
|
||||
text-decoration-line: line-through;
|
||||
/* text-decoration-color: rgb(222 13 13); */
|
||||
text-decoration-style: initial;
|
||||
text-decoration-thickness: 1.5px;
|
||||
}
|
||||
|
||||
.markup ins {
|
||||
text-decoration: underline;
|
||||
background-color: rgba(0, 128, 0, 0.2);
|
||||
/* text-decoration-color: rgb(222 93 93); */
|
||||
text-decoration-style: initial;
|
||||
text-decoration-thickness: 2px;
|
||||
}
|
||||
BIN
_extensions/inst/img/rceeslogo.png
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BIN
_extensions/inst/img/rceeslogo.png
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|
After Width: | Height: | Size: 81 KiB |
BIN
_extensions/inst/img/rceeslonglogo.png
Normal file
BIN
_extensions/inst/img/rceeslonglogo.png
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|
After Width: | Height: | Size: 222 KiB |
BIN
_extensions/inst/img/signms.png
Normal file
BIN
_extensions/inst/img/signms.png
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Binary file not shown.
|
After Width: | Height: | Size: 250 KiB |
BIN
_extensions/inst/img/signmy.png
Normal file
BIN
_extensions/inst/img/signmy.png
Normal file
Binary file not shown.
|
After Width: | Height: | Size: 150 KiB |
BIN
_extensions/inst/img/ucaslogo.png
Normal file
BIN
_extensions/inst/img/ucaslogo.png
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Binary file not shown.
|
After Width: | Height: | Size: 229 KiB |
280
_extensions/inst/tex/american-chemical-society.csl
Normal file
280
_extensions/inst/tex/american-chemical-society.csl
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@@ -0,0 +1,280 @@
|
||||
<?xml version="1.0" encoding="utf-8"?>
|
||||
<style xmlns="http://purl.org/net/xbiblio/csl" class="in-text" version="1.0" demote-non-dropping-particle="sort-only" page-range-format="expanded" default-locale="en-US">
|
||||
<info>
|
||||
<title>American Chemical Society</title>
|
||||
<title-short>ACS</title-short>
|
||||
<id>http://www.zotero.org/styles/american-chemical-society</id>
|
||||
<link href="http://www.zotero.org/styles/american-chemical-society" rel="self"/>
|
||||
<link href="https://pubs.acs.org/doi/full/10.1021/acsguide.40303" rel="documentation"/>
|
||||
<link href="https://pubs.acs.org/doi/book/10.1021/acsguide" rel="documentation"/>
|
||||
<author>
|
||||
<name>Julian Onions</name>
|
||||
<email>julian.onions@gmail.com</email>
|
||||
</author>
|
||||
<contributor>
|
||||
<name>Ivan Bushmarinov</name>
|
||||
<email>ib@ineos.ac.ru</email>
|
||||
</contributor>
|
||||
<contributor>
|
||||
<name>Sebastian Karcher</name>
|
||||
</contributor>
|
||||
<category citation-format="numeric"/>
|
||||
<category field="chemistry"/>
|
||||
<summary>The American Chemical Society style</summary>
|
||||
<updated>2021-06-04T03:27:50+00:00</updated>
|
||||
<rights license="http://creativecommons.org/licenses/by-sa/3.0/">This work is licensed under a Creative Commons Attribution-ShareAlike 3.0 License</rights>
|
||||
</info>
|
||||
<locale xml:lang="en">
|
||||
<terms>
|
||||
<term name="editortranslator" form="short">
|
||||
<single>ed. and translator</single>
|
||||
<multiple>eds. and translators</multiple>
|
||||
</term>
|
||||
<term name="translator" form="short">
|
||||
<single>translator</single>
|
||||
<multiple>translators</multiple>
|
||||
</term>
|
||||
<term name="collection-editor" form="short">
|
||||
<single>series ed.</single>
|
||||
<multiple>series eds.</multiple>
|
||||
</term>
|
||||
</terms>
|
||||
</locale>
|
||||
<macro name="editor">
|
||||
<group delimiter="; ">
|
||||
<names variable="editor translator" delimiter="; ">
|
||||
<name sort-separator=", " initialize-with=". " name-as-sort-order="all" delimiter=", " delimiter-precedes-last="always"/>
|
||||
<label form="short" prefix=", " text-case="title"/>
|
||||
</names>
|
||||
<names variable="collection-editor">
|
||||
<name sort-separator=", " initialize-with=". " name-as-sort-order="all" delimiter=", " delimiter-precedes-last="always"/>
|
||||
<label form="short" prefix=", " text-case="title"/>
|
||||
</names>
|
||||
</group>
|
||||
</macro>
|
||||
<macro name="author">
|
||||
<names variable="author" suffix=".">
|
||||
<name sort-separator=", " initialize-with=". " name-as-sort-order="all" delimiter="; " delimiter-precedes-last="always"/>
|
||||
<label form="short" prefix=", " text-case="capitalize-first"/>
|
||||
</names>
|
||||
</macro>
|
||||
<macro name="publisher">
|
||||
<choose>
|
||||
<if type="thesis" match="any">
|
||||
<group delimiter=", ">
|
||||
<text variable="publisher"/>
|
||||
<text variable="publisher-place"/>
|
||||
</group>
|
||||
</if>
|
||||
<else>
|
||||
<group delimiter=": ">
|
||||
<text variable="publisher"/>
|
||||
<text variable="publisher-place"/>
|
||||
</group>
|
||||
</else>
|
||||
</choose>
|
||||
</macro>
|
||||
<macro name="title">
|
||||
<choose>
|
||||
<if type="bill book graphic legal_case legislation motion_picture report song" match="any">
|
||||
<text variable="title" text-case="title" font-style="italic"/>
|
||||
</if>
|
||||
<else>
|
||||
<text variable="title" text-case="title"/>
|
||||
</else>
|
||||
</choose>
|
||||
</macro>
|
||||
<macro name="volume">
|
||||
<group delimiter=" ">
|
||||
<text term="volume" form="short" text-case="capitalize-first"/>
|
||||
<text variable="volume"/>
|
||||
</group>
|
||||
</macro>
|
||||
<macro name="series">
|
||||
<text variable="collection-title"/>
|
||||
</macro>
|
||||
<macro name="pages">
|
||||
<label variable="page" form="short" suffix=" " strip-periods="true"/>
|
||||
<text variable="page"/>
|
||||
</macro>
|
||||
<macro name="book-container">
|
||||
<group delimiter=". ">
|
||||
<text macro="title"/>
|
||||
<choose>
|
||||
<if type="entry-dictionary entry-encyclopedia" match="none">
|
||||
<group delimiter=" ">
|
||||
<text term="in" text-case="capitalize-first"/>
|
||||
<text variable="container-title" font-style="italic"/>
|
||||
</group>
|
||||
</if>
|
||||
<else>
|
||||
<text variable="container-title" font-style="italic"/>
|
||||
</else>
|
||||
</choose>
|
||||
</group>
|
||||
</macro>
|
||||
<macro name="issued">
|
||||
<date variable="issued" delimiter=" ">
|
||||
<date-part name="year"/>
|
||||
</date>
|
||||
</macro>
|
||||
<macro name="full-issued">
|
||||
<date variable="issued" delimiter=" ">
|
||||
<date-part name="month" form="long" suffix=" "/>
|
||||
<date-part name="day" suffix=", "/>
|
||||
<date-part name="year"/>
|
||||
</date>
|
||||
</macro>
|
||||
<macro name="edition">
|
||||
<choose>
|
||||
<if is-numeric="edition">
|
||||
<group delimiter=" ">
|
||||
<number variable="edition" form="ordinal"/>
|
||||
<text term="edition" form="short"/>
|
||||
</group>
|
||||
</if>
|
||||
<else>
|
||||
<text variable="edition" suffix="."/>
|
||||
</else>
|
||||
</choose>
|
||||
</macro>
|
||||
<citation collapse="citation-number">
|
||||
<sort>
|
||||
<key variable="citation-number"/>
|
||||
</sort>
|
||||
<layout delimiter="," vertical-align="sup">
|
||||
<text variable="citation-number"/>
|
||||
</layout>
|
||||
</citation>
|
||||
<bibliography second-field-align="flush" entry-spacing="0">
|
||||
<layout suffix=".">
|
||||
<text variable="citation-number" prefix="(" suffix=") "/>
|
||||
<text macro="author" suffix=" "/>
|
||||
<choose>
|
||||
<if type="article-journal review" match="any">
|
||||
<group delimiter=" ">
|
||||
<text macro="title" suffix="."/>
|
||||
<text variable="container-title" font-style="italic" form="short"/>
|
||||
<group delimiter=", ">
|
||||
<text macro="issued" font-weight="bold"/>
|
||||
<choose>
|
||||
<if variable="volume">
|
||||
<group delimiter=" ">
|
||||
<text variable="volume" font-style="italic"/>
|
||||
<text variable="issue" prefix="(" suffix=")"/>
|
||||
</group>
|
||||
</if>
|
||||
<else>
|
||||
<group delimiter=" ">
|
||||
<text term="issue" form="short" text-case="capitalize-first"/>
|
||||
<text variable="issue"/>
|
||||
</group>
|
||||
</else>
|
||||
</choose>
|
||||
<text variable="page"/>
|
||||
</group>
|
||||
</group>
|
||||
</if>
|
||||
<else-if type="article-magazine article-newspaper article" match="any">
|
||||
<group delimiter=" ">
|
||||
<text macro="title" suffix="."/>
|
||||
<text variable="container-title" font-style="italic" suffix="."/>
|
||||
<text macro="edition"/>
|
||||
<text macro="publisher"/>
|
||||
<group delimiter=", ">
|
||||
<text macro="full-issued"/>
|
||||
<text macro="pages"/>
|
||||
</group>
|
||||
</group>
|
||||
</else-if>
|
||||
<else-if type="thesis">
|
||||
<group delimiter=", ">
|
||||
<group delimiter=". ">
|
||||
<text macro="title"/>
|
||||
<text variable="genre"/>
|
||||
</group>
|
||||
<text macro="publisher"/>
|
||||
<text macro="issued"/>
|
||||
<text macro="volume"/>
|
||||
<text macro="pages"/>
|
||||
</group>
|
||||
</else-if>
|
||||
<else-if type="bill book graphic legal_case legislation motion_picture report song" match="any">
|
||||
<group delimiter="; ">
|
||||
<group delimiter=", ">
|
||||
<text macro="title"/>
|
||||
<text macro="edition"/>
|
||||
</group>
|
||||
<text macro="editor" prefix=" "/>
|
||||
<text macro="series"/>
|
||||
<choose>
|
||||
<if type="report">
|
||||
<group delimiter=" ">
|
||||
<text variable="genre"/>
|
||||
<text variable="number"/>
|
||||
</group>
|
||||
</if>
|
||||
</choose>
|
||||
<group delimiter=", ">
|
||||
<text macro="publisher"/>
|
||||
<text macro="issued"/>
|
||||
</group>
|
||||
<group delimiter=", ">
|
||||
<text macro="volume"/>
|
||||
<text macro="pages"/>
|
||||
</group>
|
||||
</group>
|
||||
</else-if>
|
||||
<else-if type="patent">
|
||||
<group delimiter=", ">
|
||||
<group delimiter=". ">
|
||||
<text macro="title"/>
|
||||
<text variable="number"/>
|
||||
</group>
|
||||
<date variable="issued" form="text"/>
|
||||
</group>
|
||||
</else-if>
|
||||
<else-if type="chapter paper-conference entry-dictionary entry-encyclopedia" match="any">
|
||||
<group delimiter="; ">
|
||||
<text macro="book-container"/>
|
||||
<text macro="editor"/>
|
||||
<text macro="series"/>
|
||||
<group delimiter=", ">
|
||||
<text macro="publisher"/>
|
||||
<text macro="issued"/>
|
||||
</group>
|
||||
<group delimiter=", ">
|
||||
<text macro="volume"/>
|
||||
<text macro="pages"/>
|
||||
</group>
|
||||
</group>
|
||||
</else-if>
|
||||
<else-if type="webpage">
|
||||
<group delimiter=" ">
|
||||
<text variable="title"/>
|
||||
<text variable="URL"/>
|
||||
<date variable="accessed" prefix="(accessed " suffix=")" delimiter=" ">
|
||||
<date-part name="year"/>
|
||||
<date-part name="month" prefix="-" form="numeric-leading-zeros"/>
|
||||
<date-part name="day" prefix="-" form="numeric-leading-zeros"/>
|
||||
</date>
|
||||
</group>
|
||||
</else-if>
|
||||
<else>
|
||||
<group delimiter=", ">
|
||||
<group delimiter=". ">
|
||||
<text macro="title"/>
|
||||
<text variable="container-title" font-style="italic"/>
|
||||
</group>
|
||||
<group delimiter=", ">
|
||||
<text macro="issued"/>
|
||||
<text variable="volume" font-style="italic"/>
|
||||
<text variable="page"/>
|
||||
</group>
|
||||
</group>
|
||||
</else>
|
||||
</choose>
|
||||
<text variable="DOI" prefix=". https://doi.org/"/>
|
||||
</layout>
|
||||
</bibliography>
|
||||
</style>
|
||||
@@ -0,0 +1,435 @@
|
||||
<?xml version="1.0" encoding="utf-8"?>
|
||||
<style xmlns="http://purl.org/net/xbiblio/csl" version="1.0" class="in-text" names-delimiter=". " name-as-sort-order="all" sort-separator=" " demote-non-dropping-particle="never" initialize-with=" " initialize-with-hyphen="false" page-range-format="expanded" default-locale="zh-CN">
|
||||
<info>
|
||||
<title>China National Standard GB/T 7714-2015 (numeric, 中文)</title>
|
||||
<id>http://www.zotero.org/styles/china-national-standard-gb-t-7714-2015-numeric</id>
|
||||
<link href="http://www.zotero.org/styles/china-national-standard-gb-t-7714-2015-numeric" rel="self"/>
|
||||
<link href="http://std.samr.gov.cn/gb/search/gbDetailed?id=71F772D8055ED3A7E05397BE0A0AB82A" rel="documentation"/>
|
||||
<author>
|
||||
<name>牛耕田</name>
|
||||
<email>buffalo_d@163.com</email>
|
||||
</author>
|
||||
<contributor>
|
||||
<name>Zeping Lee</name>
|
||||
<email>zepinglee@gmail.com</email>
|
||||
</contributor>
|
||||
<category citation-format="numeric"/>
|
||||
<category field="generic-base"/>
|
||||
<summary>The Chinese GB/T 7714-2015 numeric style</summary>
|
||||
<updated>2022-02-23T10:44:01+00:00</updated>
|
||||
<rights license="http://creativecommons.org/licenses/by-sa/3.0/">This work is licensed under a Creative Commons Attribution-ShareAlike 3.0 License</rights>
|
||||
</info>
|
||||
<locale xml:lang="zh-CN">
|
||||
<date form="text">
|
||||
<date-part name="year" suffix="年" range-delimiter="—"/>
|
||||
<date-part name="month" form="numeric" suffix="月" range-delimiter="—"/>
|
||||
<date-part name="day" suffix="日" range-delimiter="—"/>
|
||||
</date>
|
||||
<terms>
|
||||
<term name="edition" form="short">版</term>
|
||||
<term name="open-quote">“</term>
|
||||
<term name="close-quote">”</term>
|
||||
<term name="open-inner-quote">‘</term>
|
||||
<term name="close-inner-quote">’</term>
|
||||
</terms>
|
||||
</locale>
|
||||
<locale>
|
||||
<date form="numeric">
|
||||
<date-part name="year" range-delimiter="/"/>
|
||||
<date-part name="month" form="numeric-leading-zeros" prefix="-" range-delimiter="/"/>
|
||||
<date-part name="day" form="numeric-leading-zeros" prefix="-" range-delimiter="/"/>
|
||||
</date>
|
||||
<terms>
|
||||
<term name="page-range-delimiter">-</term>
|
||||
</terms>
|
||||
</locale>
|
||||
<!-- 引用日期 -->
|
||||
<macro name="accessed-date">
|
||||
<date variable="accessed" form="numeric" prefix="[" suffix="]"/>
|
||||
</macro>
|
||||
<!-- 主要责任者 -->
|
||||
<macro name="author">
|
||||
<names variable="author">
|
||||
<name>
|
||||
<name-part name="family" text-case="uppercase"/>
|
||||
<name-part name="given"/>
|
||||
</name>
|
||||
<substitute>
|
||||
<names variable="composer"/>
|
||||
<names variable="illustrator"/>
|
||||
<names variable="director"/>
|
||||
<choose>
|
||||
<if variable="container-title" match="none">
|
||||
<names variable="editor"/>
|
||||
</if>
|
||||
</choose>
|
||||
</substitute>
|
||||
</names>
|
||||
</macro>
|
||||
<!-- 书籍的卷号（“第 x 卷”或“第 x 册”） -->
|
||||
<macro name="book-volume">
|
||||
<choose>
|
||||
<if type="article article-journal article-magazine article-newspaper periodical" match="none">
|
||||
<choose>
|
||||
<if is-numeric="volume">
|
||||
<group delimiter=" ">
|
||||
<label variable="volume" form="short" text-case="capitalize-first"/>
|
||||
<text variable="volume"/>
|
||||
</group>
|
||||
</if>
|
||||
<else>
|
||||
<text variable="volume"/>
|
||||
</else>
|
||||
</choose>
|
||||
</if>
|
||||
</choose>
|
||||
</macro>
|
||||
<!-- 专著主要责任者 -->
|
||||
<macro name="container-author">
|
||||
<names variable="editor">
|
||||
<name>
|
||||
<name-part name="family" text-case="uppercase"/>
|
||||
<name-part name="given"/>
|
||||
</name>
|
||||
<substitute>
|
||||
<names variable="editorial-director"/>
|
||||
<names variable="collection-editor"/>
|
||||
<names variable="container-author"/>
|
||||
</substitute>
|
||||
</names>
|
||||
</macro>
|
||||
<!-- 专著题名 -->
|
||||
<macro name="container-title">
|
||||
<group delimiter=", ">
|
||||
<group delimiter=": ">
|
||||
<choose>
|
||||
<if variable="container-title">
|
||||
<text variable="container-title"/>
|
||||
</if>
|
||||
<else>
|
||||
<text variable="event"/>
|
||||
</else>
|
||||
</choose>
|
||||
<text macro="book-volume"/>
|
||||
</group>
|
||||
<choose>
|
||||
<if variable="event-date">
|
||||
<date variable="event-date" form="text"/>
|
||||
<text variable="event-place"/>
|
||||
</if>
|
||||
</choose>
|
||||
</group>
|
||||
</macro>
|
||||
<!-- 版本项 -->
|
||||
<macro name="edition">
|
||||
<choose>
|
||||
<if is-numeric="edition">
|
||||
<group delimiter=" ">
|
||||
<number variable="edition" form="ordinal"/>
|
||||
<text term="edition" form="short"/>
|
||||
</group>
|
||||
</if>
|
||||
<else>
|
||||
<text variable="edition"/>
|
||||
</else>
|
||||
</choose>
|
||||
</macro>
|
||||
<!-- 电子资源的更新或修改日期 -->
|
||||
<macro name="issued-date">
|
||||
<date variable="issued" form="numeric"/>
|
||||
</macro>
|
||||
<!-- 出版年 -->
|
||||
<macro name="issued-year">
|
||||
<choose>
|
||||
<if is-uncertain-date="issued">
|
||||
<date variable="issued" prefix="[" suffix="]">
|
||||
<date-part name="year" range-delimiter="-"/>
|
||||
</date>
|
||||
</if>
|
||||
<else>
|
||||
<date variable="issued">
|
||||
<date-part name="year" range-delimiter="-"/>
|
||||
</date>
|
||||
</else>
|
||||
</choose>
|
||||
</macro>
|
||||
<!-- 专著的出版项 -->
|
||||
<macro name="publishing">
|
||||
<group delimiter=": ">
|
||||
<group delimiter=", ">
|
||||
<group delimiter=": ">
|
||||
<text variable="publisher-place"/>
|
||||
<text variable="publisher"/>
|
||||
</group>
|
||||
<!-- 非电子资源显示“出版年” -->
|
||||
<choose>
|
||||
<if variable="publisher page" type="book chapter paper-conference thesis" match="any">
|
||||
<text macro="issued-year"/>
|
||||
</if>
|
||||
<else-if variable="URL DOI" match="none">
|
||||
<text macro="issued-year"/>
|
||||
</else-if>
|
||||
</choose>
|
||||
</group>
|
||||
<text variable="page"/>
|
||||
</group>
|
||||
<choose>
|
||||
<!-- 纯电子资源显示“更新或修改日期” -->
|
||||
<if variable="publisher page" type="book chapter paper-conference thesis" match="none">
|
||||
<choose>
|
||||
<if variable="URL DOI" match="any">
|
||||
<text macro="issued-date" prefix="(" suffix=")"/>
|
||||
</if>
|
||||
</choose>
|
||||
</if>
|
||||
</choose>
|
||||
<text macro="accessed-date"/>
|
||||
</macro>
|
||||
<!-- 其他责任者 -->
|
||||
<macro name="secondary-contributor">
|
||||
<names variable="translator">
|
||||
<name>
|
||||
<name-part name="family" text-case="uppercase"/>
|
||||
<name-part name="given"/>
|
||||
</name>
|
||||
<label form="short" prefix=", "/>
|
||||
</names>
|
||||
</macro>
|
||||
<!-- 连续出版物中的析出文献的出处项（年、卷、期等信息） -->
|
||||
<macro name="periodical-publishing">
|
||||
<group>
|
||||
<group delimiter=": ">
|
||||
<group>
|
||||
<group delimiter=", ">
|
||||
<text macro="container-title" text-case="title"/>
|
||||
<choose>
|
||||
<if type="article-newspaper">
|
||||
<text macro="issued-date"/>
|
||||
</if>
|
||||
<else>
|
||||
<text macro="issued-year"/>
|
||||
</else>
|
||||
</choose>
|
||||
<text variable="volume"/>
|
||||
</group>
|
||||
<text variable="issue" prefix="(" suffix=")"/>
|
||||
</group>
|
||||
<text variable="page"/>
|
||||
</group>
|
||||
<text macro="accessed-date"/>
|
||||
</group>
|
||||
</macro>
|
||||
<!-- 题名 -->
|
||||
<macro name="title">
|
||||
<group delimiter=", ">
|
||||
<group delimiter=": ">
|
||||
<text variable="title"/>
|
||||
<group delimiter=" ">
|
||||
<choose>
|
||||
<if variable="container-title" type="paper-conference" match="none">
|
||||
<text macro="book-volume"/>
|
||||
</if>
|
||||
</choose>
|
||||
<choose>
|
||||
<if type="bill legal_case legislation patent regulation report standard" match="any">
|
||||
<text variable="number"/>
|
||||
</if>
|
||||
</choose>
|
||||
</group>
|
||||
</group>
|
||||
<choose>
|
||||
<if variable="container-title" type="paper-conference" match="none">
|
||||
<choose>
|
||||
<if variable="event-date">
|
||||
<text variable="event-place"/>
|
||||
<date variable="event-date" form="text"/>
|
||||
</if>
|
||||
</choose>
|
||||
</if>
|
||||
</choose>
|
||||
</group>
|
||||
<text macro="type-code" prefix="[" suffix="]"/>
|
||||
</macro>
|
||||
<!-- 文献类型标识 -->
|
||||
<macro name="type-code">
|
||||
<group delimiter="/">
|
||||
<choose>
|
||||
<if type="article">
|
||||
<choose>
|
||||
<if variable="archive">
|
||||
<text value="A"/>
|
||||
</if>
|
||||
<else>
|
||||
<text value="M"/>
|
||||
</else>
|
||||
</choose>
|
||||
</if>
|
||||
<else-if type="article-journal article-magazine periodical" match="any">
|
||||
<text value="J"/>
|
||||
</else-if>
|
||||
<else-if type="article-newspaper">
|
||||
<text value="N"/>
|
||||
</else-if>
|
||||
<else-if type="bill collection legal_case legislation regulation" match="any">
|
||||
<text value="A"/>
|
||||
</else-if>
|
||||
<else-if type="book chapter" match="any">
|
||||
<text value="M"/>
|
||||
</else-if>
|
||||
<else-if type="dataset">
|
||||
<text value="DS"/>
|
||||
</else-if>
|
||||
<else-if type="map">
|
||||
<text value="CM"/>
|
||||
</else-if>
|
||||
<else-if type="paper-conference">
|
||||
<text value="C"/>
|
||||
</else-if>
|
||||
<else-if type="patent">
|
||||
<text value="P"/>
|
||||
</else-if>
|
||||
<else-if type="post post-weblog webpage" match="any">
|
||||
<text value="EB"/>
|
||||
</else-if>
|
||||
<else-if type="report">
|
||||
<text value="R"/>
|
||||
</else-if>
|
||||
<else-if type="software">
|
||||
<text value="CP"/>
|
||||
</else-if>
|
||||
<else-if type="standard">
|
||||
<text value="S"/>
|
||||
</else-if>
|
||||
<else-if type="thesis">
|
||||
<text value="D"/>
|
||||
</else-if>
|
||||
<else>
|
||||
<text value="Z"/>
|
||||
</else>
|
||||
</choose>
|
||||
<choose>
|
||||
<if variable="URL DOI" match="any">
|
||||
<text value="OL"/>
|
||||
</if>
|
||||
</choose>
|
||||
</group>
|
||||
</macro>
|
||||
<!-- 获取和访问路径以及 DOI -->
|
||||
<macro name="url-doi">
|
||||
<group delimiter=". ">
|
||||
<text variable="URL"/>
|
||||
<text variable="DOI" prefix="DOI:"/>
|
||||
</group>
|
||||
</macro>
|
||||
<!-- 连续出版物的年卷期 -->
|
||||
<macro name="year-volume-issue">
|
||||
<group>
|
||||
<group delimiter=", ">
|
||||
<text macro="issued-year"/>
|
||||
<text variable="volume"/>
|
||||
</group>
|
||||
<text variable="issue" prefix="(" suffix=")"/>
|
||||
</group>
|
||||
</macro>
|
||||
<!-- 专著和电子资源 -->
|
||||
<macro name="monograph-layout">
|
||||
<group delimiter=". " suffix=".">
|
||||
<text macro="author"/>
|
||||
<text macro="title"/>
|
||||
<text macro="secondary-contributor"/>
|
||||
<text macro="edition"/>
|
||||
<text macro="publishing"/>
|
||||
<text macro="url-doi"/>
|
||||
</group>
|
||||
</macro>
|
||||
<!-- 专著中的析出文献 -->
|
||||
<macro name="chapter-in-book-layout">
|
||||
<group delimiter=". " suffix=".">
|
||||
<text macro="author"/>
|
||||
<group delimiter="//">
|
||||
<group delimiter=". ">
|
||||
<text macro="title"/>
|
||||
<text macro="secondary-contributor"/>
|
||||
</group>
|
||||
<group delimiter=". ">
|
||||
<text macro="container-author"/>
|
||||
<text macro="container-title"/>
|
||||
</group>
|
||||
</group>
|
||||
<text macro="edition"/>
|
||||
<text macro="publishing"/>
|
||||
<text macro="url-doi"/>
|
||||
</group>
|
||||
</macro>
|
||||
<!-- 连续出版物 -->
|
||||
<macro name="serial-layout">
|
||||
<group delimiter=". " suffix=".">
|
||||
<text macro="author"/>
|
||||
<text macro="title"/>
|
||||
<text macro="year-volume-issue"/>
|
||||
<text macro="publishing"/>
|
||||
<text variable="URL"/>
|
||||
<text variable="DOI" prefix="DOI:"/>
|
||||
</group>
|
||||
</macro>
|
||||
<!-- 连续出版物中的析出文献 -->
|
||||
<macro name="article-in-periodical-layout">
|
||||
<group delimiter=". " suffix=".">
|
||||
<text macro="author"/>
|
||||
<text macro="title"/>
|
||||
<text macro="periodical-publishing"/>
|
||||
<text macro="url-doi"/>
|
||||
</group>
|
||||
</macro>
|
||||
<!-- 专利文献 -->
|
||||
<macro name="patent-layout">
|
||||
<group delimiter=". " suffix=".">
|
||||
<text macro="author"/>
|
||||
<text macro="title"/>
|
||||
<group>
|
||||
<text macro="issued-date"/>
|
||||
<text macro="accessed-date"/>
|
||||
</group>
|
||||
<text macro="url-doi"/>
|
||||
</group>
|
||||
</macro>
|
||||
<!-- 正文中引用的文献标注格式 -->
|
||||
<macro name="citation-layout">
|
||||
<group>
|
||||
<text variable="citation-number"/>
|
||||
</group>
|
||||
</macro>
|
||||
<!-- 参考文献表格式 -->
|
||||
<macro name="entry-layout">
|
||||
<choose>
|
||||
<if type="article-journal article-magazine article-newspaper" match="any">
|
||||
<text macro="article-in-periodical-layout"/>
|
||||
</if>
|
||||
<else-if type="periodical">
|
||||
<text macro="serial-layout"/>
|
||||
</else-if>
|
||||
<else-if type="patent">
|
||||
<text macro="patent-layout"/>
|
||||
</else-if>
|
||||
<else-if type="paper-conference" variable="container-title" match="any">
|
||||
<text macro="chapter-in-book-layout"/>
|
||||
</else-if>
|
||||
<else>
|
||||
<text macro="monograph-layout"/>
|
||||
</else>
|
||||
</choose>
|
||||
</macro>
|
||||
<citation collapse="citation-number" after-collapse-delimiter=",">
|
||||
<layout vertical-align="sup" delimiter="," prefix="[" suffix="]">
|
||||
<text macro="citation-layout"/>
|
||||
</layout>
|
||||
</citation>
|
||||
<bibliography entry-spacing="0" et-al-min="4" et-al-use-first="3" second-field-align="flush">
|
||||
<!-- 取消这部分注释可以使用 CSL-M 的功能支持双语 -->
|
||||
<!-- <layout locale="en"><text variable="citation-number" prefix="[" suffix="]"/><text macro="entry-layout"/></layout> -->
|
||||
<layout>
|
||||
<text variable="citation-number" prefix="[" suffix="]"/>
|
||||
<text macro="entry-layout"/>
|
||||
</layout>
|
||||
</bibliography>
|
||||
</style>
|
||||
240
_extensions/inst/tex/cv.tex
Normal file
240
_extensions/inst/tex/cv.tex
Normal file
@@ -0,0 +1,240 @@
|
||||
%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
|
||||
% Academic Letter LaTeX and RMarkdown Structure %
|
||||
% Author: Pedro Henrique Pereira Braga %
|
||||
% %
|
||||
% License: %
|
||||
% CC BY-NC-SA 3.0 (http://creativecommons.org/licenses/by-nc-sa/3.0/) %
|
||||
% %
|
||||
%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
|
||||
|
||||
% Set the font size (11pt, for now) and paper size (e.g. letterpaper, a4paper)
|
||||
\documentclass[11pt, letterpaper]{letter}
|
||||
|
||||
%----------------------------------------------------------------------
|
||||
% PACKAGES AND OTHER DOCUMENT CONFIGURATIONS
|
||||
%----------------------------------------------------------------------
|
||||
|
||||
\usepackage{graphicx} % Required for including pictures
|
||||
\usepackage{fancyhdr} % Allows the use of fancy headers and footers
|
||||
|
||||
\usepackage{microtype} % For typography improvement
|
||||
|
||||
\usepackage{url} % Allows the use of hyperlinks
|
||||
\urlstyle{same} % Allows hyperlink fonts to be the same as the mainfont
|
||||
\usepackage[hidelinks]{hyperref} % Allows the use of hyperlinks and
|
||||
% removes the blue boxes around the link
|
||||
|
||||
\pagestyle{empty} % Removes headers and footers
|
||||
|
||||
\usepackage{setspace} % Allows the use of double spacing in the letter body
|
||||
|
||||
\setlength\parindent{1cm} % Paragraph indentation
|
||||
|
||||
% Create a new command for the horizontal rule in the document which allows
|
||||
% thickness specification
|
||||
\makeatletter
|
||||
\def\@texttop{} % force the address to start above
|
||||
\renewcommand*{\opening}[1]{\ifx\@empty\fromaddress
|
||||
\thispagestyle{firstpage}%
|
||||
{\raggedleft\@date\par}%
|
||||
\else % home address
|
||||
\thispagestyle{empty}%
|
||||
{\raggedleft\begin{tabular}{l@{}}\ignorespaces
|
||||
\fromaddress \\*[2\parskip]%
|
||||
\@date \end{tabular}\par}%
|
||||
\fi
|
||||
%\vspace{2\parskip}% <-- Removed
|
||||
%{\raggedright \toname \\ \toaddress \par}% <-- Removed
|
||||
%\vspace{2\parskip}% <-- Removed
|
||||
#1\par\nobreak}
|
||||
\let\ps@empty\ps@plain
|
||||
\let\ps@firstpage\ps@plain
|
||||
\makeatother
|
||||
|
||||
%--------------------------------------------------------------------------
|
||||
% FONTS
|
||||
%--------------------------------------------------------------------------
|
||||
|
||||
\usepackage[T1]{fontenc} % Output font encoding for international characters
|
||||
% \usepackage[utf8]{inputenc} % Required for inputting international characters
|
||||
\usepackage[quiet]{fontspec} % Allows the use of fontspec
|
||||
\setmainfont{Calibri}
|
||||
% \usepackage{txfonts} % Allows the use of Lato fonts
|
||||
|
||||
|
||||
%----------------------------------------------------------------------------
|
||||
% DOCUMENT MARGINS
|
||||
%----------------------------------------------------------------------------
|
||||
|
||||
\usepackage{geometry} % Required for adjusting page dimensions
|
||||
|
||||
\geometry{
|
||||
headheight = 0.7in, % Header height
|
||||
top=1.5in, % Top margin
|
||||
bottom=1.5cm, % Bottom margin
|
||||
left=3cm, % Left margin
|
||||
right=3cm, % Right margin
|
||||
% showframe, % Uncomment to show how the type block is set on the page
|
||||
}
|
||||
|
||||
%-----------------------------------------------------------------------------
|
||||
% AUTHOR AND RECIPIENTS NEW COMMANDS AND DETAILS STRUCTURE
|
||||
%-----------------------------------------------------------------------------
|
||||
|
||||
\newcommand{\authordetails}[1]{\renewcommand{\authordetails}{#1}}
|
||||
\newcommand{\recipientdetails}[1]{\renewcommand{\recipientdetails}{#1}}
|
||||
|
||||
%-----------------------------------------------------------------------------
|
||||
% HEADER STRUCTURE
|
||||
%-----------------------------------------------------------------------------
|
||||
|
||||
\address{
|
||||
% Include the author's details on the right side of the page under the line
|
||||
\raggedleft{
|
||||
\footnotesize{ % Use a smaller font size
|
||||
$author$\\ % Author name
|
||||
\authordetails\\
|
||||
\hspace{1mm}
|
||||
}
|
||||
}
|
||||
\vspace{-0.05\textheight} % Move the date and letter content up
|
||||
}
|
||||
|
||||
%------------------------------------------------------------------------------
|
||||
% COMPOSE THE ENTIRE HEADER
|
||||
%------------------------------------------------------------------------------
|
||||
|
||||
\renewcommand{\opening}[1]{
|
||||
{\fromaddress
|
||||
\vspace{0.05\textheight}\\ % Print the sender's address here and add some whitespace to allow the printing of the date
|
||||
\raggedleft{$date$} % Include the date, aligned to the right
|
||||
\par % par
|
||||
}
|
||||
{\raggedright
|
||||
\toname\\
|
||||
\toaddress
|
||||
\par} % Print the recipient's name and adress
|
||||
\vspace{0.25cm} % White vertical space after recipient's address
|
||||
\noindent #1 % Following this, insert the opening info
|
||||
}
|
||||
|
||||
%------------------------------------------------------------------------------
|
||||
% SIGNATURE STRUCTURE
|
||||
%------------------------------------------------------------------------------
|
||||
% The signature is a combination of the author's name, title and institution
|
||||
\signature{$author$, on behalf of all authors\\
|
||||
Email: $from_email$}
|
||||
|
||||
% I will later combine the option of inserting a signature within it
|
||||
|
||||
\renewcommand{\closing}[1]{
|
||||
\vspace{2.5mm} % Some whitespace after the letter content and before the signature
|
||||
\noindent % Stop paragraph indentation
|
||||
% \hspace*{\longindentation} % Move the signature right to the value of \longindentation
|
||||
\parbox{\indentedwidth}{
|
||||
\raggedright
|
||||
#1 % Print the signature text
|
||||
% \vskip 1.65cm % Whitespace between the closing text and author's name for a physical signature
|
||||
\\\includegraphics[height=0.6in, keepaspectratio=true]{$from_sign$}\\
|
||||
\fromsig % Prints the value of \signature{}, i.e. author name and title
|
||||
}
|
||||
}
|
||||
|
||||
%-------------------------------------------------------------------------------
|
||||
% AUTHOR'S INFORMATION
|
||||
%-------------------------------------------------------------------------------
|
||||
|
||||
\authordetails{
|
||||
$from_position$\\
|
||||
$from_department$\\ % Sender's department/institution
|
||||
$from_institution$\\
|
||||
$from_address$ % Sender's address
|
||||
% $from_city$, $from_state_province$\\ % Sender's city, state or province,
|
||||
% $from_postalcode$\\ % postal code
|
||||
% $from_country$
|
||||
}
|
||||
|
||||
%------------------------------------------------------------------------------
|
||||
% RECIPIENT'S INFORMATION
|
||||
%------------------------------------------------------------------------------
|
||||
|
||||
\recipientdetails{
|
||||
$to_professional_title$ $to_name$\\
|
||||
$if(to_journal)$
|
||||
\textit{$to_journal$}
|
||||
$endif$
|
||||
}
|
||||
|
||||
%------------------------------------------------------------------------------
|
||||
% HEADER CONTENTS
|
||||
%------------------------------------------------------------------------------
|
||||
|
||||
\fancypagestyle{firstpage}{
|
||||
\fancyhf{}
|
||||
\fancyhead[L]{
|
||||
\includegraphics[height=0.6in, keepaspectratio=true]{$from_institution_logo$}
|
||||
}
|
||||
\fancyhead[R]{$author$\\
|
||||
\footnotesize{
|
||||
$from_email$\\ % Sender's email address
|
||||
% $from_personal_website$ \\ % Sender's URL
|
||||
$from_phone$ % Sender's phone number
|
||||
}
|
||||
}
|
||||
}
|
||||
|
||||
\fancypagestyle{plain}{
|
||||
\fancyhf{}
|
||||
\fancyhead[L]{
|
||||
\includegraphics[height=0.6in, keepaspectratio=true]{$from_institution_logo$}
|
||||
}
|
||||
\fancyhead[R]{$author$\\
|
||||
\footnotesize{
|
||||
$from_email$\\ % Sender's email address
|
||||
% $from_personal_website$ \\ % Sender's URL
|
||||
$from_phone$ % Sender's phone number
|
||||
}
|
||||
}
|
||||
}
|
||||
|
||||
\fancypagestyle{empty}{
|
||||
\fancyhf{}
|
||||
\fancyhead[L]{
|
||||
\includegraphics[height=0.6in, keepaspectratio=true]{$from_institution_logo$}
|
||||
}
|
||||
\fancyhead[R]{$author$\\
|
||||
\footnotesize{
|
||||
$from_email$\\ % Sender's email address
|
||||
% $from_personal_website$ \\ % Sender's URL
|
||||
$from_phone$ % Sender's phone number
|
||||
}
|
||||
}
|
||||
}
|
||||
|
||||
%------------------------------------------------------------------------------
|
||||
\pagestyle{plain}
|
||||
|
||||
\begin{document}
|
||||
|
||||
%------------------------------------------------------------------------------
|
||||
% TO ADDRESS
|
||||
%------------------------------------------------------------------------------
|
||||
|
||||
\begin{letter}{\recipientdetails}
|
||||
|
||||
%------------------------------------------------------------------------------
|
||||
% LETTER CONTENT
|
||||
%------------------------------------------------------------------------------
|
||||
|
||||
\opening{$opening_greeting$}
|
||||
% \begin{doublespacing}
|
||||
|
||||
$body$
|
||||
|
||||
% \end{doublespacing}
|
||||
\closing{$closing_greeting$}
|
||||
|
||||
%------------------------------------------------------------------------------
|
||||
|
||||
\end{letter}
|
||||
\end{document}
|
||||
426
_extensions/inst/tex/els.tex
Normal file
426
_extensions/inst/tex/els.tex
Normal file
@@ -0,0 +1,426 @@
|
||||
$-- Keeping in template layout for backward compatibility
|
||||
\documentclass[$if(layout)$$layout$$else$$for(classoption)$$classoption$$sep$,$endfor$$endif$]{elsarticle} %review=doublespace preprint=single 5p=2 column
|
||||
%%% Begin My package additions %%%%%%%%%%%%%%%%%%%
|
||||
\usepackage[hyphens]{url}
|
||||
$if(journal)$
|
||||
\journal{$journal$} % Sets Journal name
|
||||
$endif$
|
||||
\usepackage{lineno} % add
|
||||
$if(linenumbers)$
|
||||
\linenumbers % turns line numbering on
|
||||
$endif$
|
||||
\usepackage{graphicx}
|
||||
\usepackage{xstring}
|
||||
\usepackage[table]{xcolor}
|
||||
%%%%%%%%%%%%%%%% end my additions to header
|
||||
\usepackage[T1]{fontenc}
|
||||
\usepackage{lmodern}
|
||||
\usepackage{amssymb,amsmath}
|
||||
\usepackage{ifxetex,ifluatex}
|
||||
\usepackage{fixltx2e} % provides \textsubscript
|
||||
% use upquote if available, for straight quotes in verbatim environments
|
||||
\IfFileExists{upquote.sty}{\usepackage{upquote}}{}
|
||||
\ifnum 0\ifxetex 1\fi\ifluatex 1\fi=0 % if pdftex
|
||||
\usepackage[utf8]{inputenc}
|
||||
$if(euro)$
|
||||
\usepackage{eurosym}
|
||||
$endif$
|
||||
\else % if luatex or xelatex
|
||||
\usepackage{fontspec}
|
||||
\ifxetex
|
||||
\usepackage{xltxtra,xunicode}
|
||||
\fi
|
||||
\defaultfontfeatures{Mapping=tex-text,Scale=MatchLowercase}
|
||||
\newcommand{\euro}{€}
|
||||
$if(mainfont)$
|
||||
\setmainfont{$mainfont$}
|
||||
$endif$
|
||||
$if(sansfont)$
|
||||
\setsansfont{$sansfont$}
|
||||
$endif$
|
||||
$if(monofont)$
|
||||
\setmonofont{$monofont$}
|
||||
$endif$
|
||||
$if(mathfont)$
|
||||
\setmathfont{$mathfont$}
|
||||
$endif$
|
||||
\fi
|
||||
% use microtype if available
|
||||
\IfFileExists{microtype.sty}{\usepackage{microtype}}{}
|
||||
$if(geometry)$
|
||||
\usepackage[$for(geometry)$$geometry$$sep$,$endfor$]{geometry}
|
||||
$endif$
|
||||
$if(natbib)$
|
||||
\usepackage{natbib}
|
||||
\setcitestyle{$natbiboptions$}
|
||||
\bibliographystyle{$if(biblio-style)$$biblio-style$$else$plainnat$endif$}
|
||||
$endif$
|
||||
$if(listings)$
|
||||
\usepackage{listings}
|
||||
$endif$
|
||||
$if(lhs)$
|
||||
\lstnewenvironment{code}{\lstset{language=Haskell,basicstyle=\small\ttfamily}}{}
|
||||
$endif$
|
||||
$if(verbatim-in-note)$
|
||||
\usepackage{fancyvrb}
|
||||
$endif$
|
||||
$if(graphics)$
|
||||
\usepackage{graphicx}
|
||||
$endif$
|
||||
\ifxetex
|
||||
\usepackage[setpagesize=false, % page size defined by xetex
|
||||
unicode=false, % unicode breaks when used with xetex
|
||||
xetex]{hyperref}
|
||||
\else
|
||||
\usepackage[unicode=true]{hyperref}
|
||||
\fi
|
||||
\hypersetup{breaklinks=true,
|
||||
bookmarks=true,
|
||||
pdfauthor={$author-meta$},
|
||||
pdftitle={$title-meta$},
|
||||
colorlinks=$if(colorlinks)$true$else$false$endif$,
|
||||
urlcolor=$if(urlcolor)$$urlcolor$$else$blue$endif$,
|
||||
linkcolor=$if(linkcolor)$$linkcolor$$else$magenta$endif$,
|
||||
pdfborder={0 0 0}}
|
||||
\urlstyle{same} % don't use monospace font for urls
|
||||
$if(links-as-notes)$
|
||||
% Make links footnotes instead of hotlinks:
|
||||
\renewcommand{\href}[2]{#2\footnote{\url{#1}}}
|
||||
$endif$
|
||||
$if(strikeout)$
|
||||
\usepackage[normalem]{ulem}
|
||||
% avoid problems with \sout in headers with hyperref:
|
||||
\pdfstringdefDisableCommands{\renewcommand{\sout}{}}
|
||||
$endif$
|
||||
$if(numbersections)$
|
||||
\setcounter{secnumdepth}{5}
|
||||
$else$
|
||||
\setcounter{secnumdepth}{0}
|
||||
$endif$
|
||||
$if(verbatim-in-note)$
|
||||
\VerbatimFootnotes % allows verbatim text in footnotes
|
||||
$endif$
|
||||
$if(lang)$
|
||||
\ifxetex
|
||||
\usepackage{polyglossia}
|
||||
\setmainlanguage{$mainlang$}
|
||||
\else
|
||||
\usepackage[$lang$]{babel}
|
||||
\fi
|
||||
$endif$
|
||||
% Pandoc toggle for numbering sections (defaults to be off)
|
||||
$if(numbersections)$
|
||||
$else$
|
||||
\setcounter{secnumdepth}{0}
|
||||
$endif$
|
||||
$if(highlighting-macros)$
|
||||
% Pandoc syntax highlighting
|
||||
$highlighting-macros$
|
||||
$endif$
|
||||
% tightlist command for lists without linebreak
|
||||
\providecommand{\tightlist}{%
|
||||
\setlength{\itemsep}{0pt}\setlength{\parskip}{0pt}}
|
||||
$if(tables)$
|
||||
% From pandoc table feature
|
||||
\usepackage{longtable,booktabs,array}
|
||||
$if(multirow)$
|
||||
\usepackage{multirow}
|
||||
$endif$
|
||||
\usepackage{calc} % for calculating minipage widths
|
||||
% Correct order of tables after \paragraph or \subparagraph
|
||||
\usepackage{etoolbox}
|
||||
\makeatletter
|
||||
\patchcmd\longtable{\par}{\if@noskipsec\mbox{}\fi\par}{}{}
|
||||
\makeatother
|
||||
% Allow footnotes in longtable head/foot
|
||||
\IfFileExists{footnotehyper.sty}{\usepackage{footnotehyper}}{\usepackage{footnote}}
|
||||
\makesavenoteenv{longtable}
|
||||
$endif$
|
||||
$if(csl-refs)$
|
||||
% Pandoc citation processing
|
||||
\newlength{\cslhangindent}
|
||||
\setlength{\cslhangindent}{1.5em}
|
||||
\newlength{\csllabelwidth}
|
||||
\setlength{\csllabelwidth}{3em}
|
||||
\newlength{\cslentryspacingunit} % times entry-spacing
|
||||
\setlength{\cslentryspacingunit}{\parskip}
|
||||
% for Pandoc 2.8 to 2.10.1
|
||||
\newenvironment{cslreferences}%
|
||||
{$if(csl-hanging-indent)$\setlength{\parindent}{0pt}%
|
||||
\everypar{\setlength{\hangindent}{\cslhangindent}}\ignorespaces$endif$}%
|
||||
{\par}
|
||||
% For Pandoc 2.11+
|
||||
\newenvironment{CSLReferences}[2] % #1 hanging-ident, #2 entry spacing
|
||||
{% don't indent paragraphs
|
||||
\setlength{\parindent}{0pt}
|
||||
% turn on hanging indent if param 1 is 1
|
||||
\ifodd #1
|
||||
\let\oldpar\par
|
||||
\def\par{\hangindent=\cslhangindent\oldpar}
|
||||
\fi
|
||||
% set entry spacing
|
||||
\setlength{\parskip}{#2\cslentryspacingunit}
|
||||
}%
|
||||
{}
|
||||
\usepackage{calc}
|
||||
\newcommand{\CSLBlock}[1]{#1\hfill\break}
|
||||
\newcommand{\CSLLeftMargin}[1]{\parbox[t]{\csllabelwidth}{#1}}
|
||||
\newcommand{\CSLRightInline}[1]{\parbox[t]{\linewidth - \csllabelwidth}{#1}\break}
|
||||
\newcommand{\CSLIndent}[1]{\hspace{\cslhangindent}#1}
|
||||
$endif$
|
||||
$for(header-includes)$
|
||||
$header-includes$
|
||||
$endfor$
|
||||
|
||||
\usepackage{xifthen}
|
||||
% set special color for EST
|
||||
\ifthenelse{\equal{$journal$}{Environmental Science \& Technology}}
|
||||
{\definecolor{seccol}{RGB}{56, 95, 66}}
|
||||
{\definecolor{seccol}{RGB}{0, 0, 0}}
|
||||
|
||||
$if(uppersections)$
|
||||
\usepackage{titlesec}
|
||||
\titleformat{\section}
|
||||
{\color{seccol}\large\bfseries\MakeUppercase}{\thesection}{1em}{}
|
||||
$endif$
|
||||
$if(sectiononnewpage)$
|
||||
\AddToHook{cmd/section/before}{\clearpage}
|
||||
$endif$
|
||||
|
||||
\usepackage{enumitem}
|
||||
\usepackage{fontspec}
|
||||
\usepackage{float}
|
||||
\setmainfont{Helvetica}
|
||||
\usepackage[normalem]{ulem}
|
||||
\usepackage{hyperref}
|
||||
\usepackage{nameref} %needed by zref-xr
|
||||
\usepackage{zref-xr,zref-hyperref,zref-user}
|
||||
\usepackage{xr-hyper}
|
||||
|
||||
% force to use \zref
|
||||
$if(msname)$
|
||||
\def\msname{$msname$}
|
||||
\zexternaldocument*{\msname}
|
||||
\renewcommand{\ref}{\zref}
|
||||
$endif$
|
||||
$if(smname)$
|
||||
\def\smname{$smname$}
|
||||
\zexternaldocument*{\smname}
|
||||
$endif$
|
||||
|
||||
\zxrsetup{toltxlabel=true}
|
||||
{\catcode`\#=12 \gdef\hashchar{#1}}
|
||||
\makeatletter
|
||||
\newcommand\hzref[1]{\edef\next{%
|
||||
\noexpand\href{%
|
||||
\zref@extractdefault{#1}{url}{}%
|
||||
\zref@ifrefcontainsprop{#1}{anchor}{%
|
||||
\hashchar\zref@extract{#1}{anchor}}{}}%
|
||||
{\noexpand\zref{#1}}}\next}
|
||||
\makeatother
|
||||
|
||||
|
||||
|
||||
$if(revision)$
|
||||
% \usepackage{xcolor}
|
||||
\usepackage{adjustbox}
|
||||
\usepackage{mdframed}
|
||||
\newmdenv[topline=false,
|
||||
leftline=true,
|
||||
bottomline=false,
|
||||
rightline=false,
|
||||
linewidth=3pt,
|
||||
%backgroundcolor=lightgray,
|
||||
linecolor=gray!30,
|
||||
backgroundcolor=gray!5,
|
||||
skipabove=\topsep,
|
||||
skipbelow=\topsep,
|
||||
leftmargin=0pt,
|
||||
rightmargin=0pt,
|
||||
innertopmargin=0pt,
|
||||
innerbottommargin=0pt
|
||||
]{refquote}
|
||||
\newmdenv[topline=false,
|
||||
leftline=true,
|
||||
bottomline=false,
|
||||
rightline=false,
|
||||
linewidth=3pt,
|
||||
%backgroundcolor=lightgray,
|
||||
backgroundcolor=red!3!white,
|
||||
linecolor=red!30!white,
|
||||
skipabove=\topsep,
|
||||
skipbelow=\topsep,
|
||||
leftmargin=0pt,
|
||||
rightmargin=0pt,
|
||||
innertopmargin=10pt,
|
||||
innerbottommargin=10pt
|
||||
]{question}
|
||||
\setenumerate{labelsep=*, leftmargin=1.0pc}
|
||||
% setup hyperlink for page and line number
|
||||
\def\msname{$if(msname)$$msname$$else$MS$endif$}
|
||||
\def\smname{$if(smname)$$smname$$else$SM$endif$}
|
||||
\setenumerate{labelsep=*, leftmargin=1.0pc}
|
||||
%\zexternaldocument*{ManuscriptNew\veraa}
|
||||
\zexternaldocument*{\msname}
|
||||
\zexternaldocument*{\smname}
|
||||
\newcommand{\hlabel}[1]{\label{#1}\hypertarget{#1}{
|
||||
\linelabel{line:#1}}}
|
||||
%\externaldocument[si-]{\smname\veraa}[\smname\veraa.pdf]
|
||||
\makeatletter
|
||||
\newcommand{\clab}[2]{%
|
||||
\protected@write\@auxout{\let\clab\@secondoftwo}{
|
||||
\string\newlabel{r:#1}{{#2}{}}}%
|
||||
\hlabel{#1}#2\hlabel{#1end}}
|
||||
\makeatother
|
||||
\newcommand{\zhypera}[1]{\href[pdfnewwindow]{\msname.pdf\##1}{\\[1ex]\textbf{Page \zpageref{#1}, Line
|
||||
\zref{line:#1}--\zref{line:#1end}:}\\}}
|
||||
\newcommand{\cref}[1]{\begin{refquote}\zhypera{#1}{\zref{r:#1}}\\[-0.5ex]\end{refquote}}
|
||||
% \newenvironment{ra}[1][\unskip]{\par \noindent \\[-1ex] \textbf{Response/Action:}\par\bf}{\ \\}
|
||||
\renewenvironment{quote}{\begin{question}}{\end{question}}
|
||||
% \renewenvironment{verbatim}{\begin{ra}}{\end{ra}}
|
||||
$endif$
|
||||
|
||||
% def default corresponding authors and equal contributing authors variables
|
||||
\def\hascorr{0}
|
||||
\def\haseqc{0}
|
||||
% check if corresponding author(s) and equal contributing authors are available
|
||||
$for(author)$$if(author.correspondence)$\def\hascorr{1}$endif$$if(author.equalcontribution)$\def\haseqc{1}$endif$ $endfor$
|
||||
|
||||
\newcommand{\getcorrauthinfo}{
|
||||
\subsection{Corresponding Author(s)}
|
||||
\def\a{} \def\b{} \def\c{}
|
||||
\hspace{-2.2em}
|
||||
$for(author)$
|
||||
$if(author.correspondence)$
|
||||
\textbf{$author.name$:}
|
||||
\vspace{-1em}
|
||||
\begin{enumerate}[labelindent=-12pt,label=\arabic*.,itemindent=0em,leftmargin=!, itemsep = -10pt]
|
||||
$for(author.institute)$ \def\a{$author.institute$}
|
||||
$for(institute)$ \def\b{$institute.id$} \def\c{$institute.name$}
|
||||
\ifx \a\b \item \c; \fi
|
||||
$endfor$
|
||||
$endfor$
|
||||
$if(author.email)$\item email: $author.email$;$endif$
|
||||
$if(author.orcid)$\item orcid: $author.orcid$;$endif$
|
||||
$if(author.tel)$\item Tel: $author.tel$;$endif$
|
||||
$if(author.fax)$\item Fax: $author.fax$$endif$
|
||||
\end{enumerate}
|
||||
$endif$
|
||||
$endfor$
|
||||
}
|
||||
|
||||
\newcommand{\getotherauthinfo}{
|
||||
\subsection{Author(s)}
|
||||
\def\a{} \def\b{} \def\c{}
|
||||
\hspace{-2.2em}
|
||||
$for(author)$
|
||||
$if(author.correspondence)$
|
||||
$else$
|
||||
\textbf{$author.name$:}
|
||||
\vspace{-1em}
|
||||
\begin{enumerate}[labelindent=-12pt,label=\arabic*.,itemindent=0em,leftmargin=!, itemsep = -10pt]
|
||||
$for(author.institute)$ \def\a{$author.institute$} $for(institute)$ \def\b{$institute.id$} \def\c{$institute.name$}
|
||||
\ifx \a\b \item \c; \fi
|
||||
$endfor$
|
||||
$endfor$
|
||||
$if(author.email)$\item email: $author.email$;$endif$
|
||||
$if(author.orcid)$\item orcid: $author.orcid$;$endif$
|
||||
$if(author.tel)$\item Tel: $author.tel$;$endif$
|
||||
$if(author.fax)$\item Fax: $author.fax$$endif$
|
||||
\end{enumerate}
|
||||
$endif$
|
||||
$endfor$
|
||||
}
|
||||
|
||||
$preamble$
|
||||
|
||||
% remove the two line around Abstract
|
||||
$if(abstract)$
|
||||
$else$
|
||||
\makeatletter
|
||||
\renewcommand{\MaketitleBox}{%
|
||||
\resetTitleCounters
|
||||
\def\baselinestretch{1}%
|
||||
\begin{center}
|
||||
\def\baselinestretch{1}%
|
||||
\large \@title \par
|
||||
\vskip 18pt
|
||||
\normalsize\elsauthors \par
|
||||
\vskip 30pt
|
||||
\footnotesize \itshape \elsaddress \par
|
||||
\end{center}
|
||||
\vskip 12pt
|
||||
}
|
||||
\makeatother
|
||||
$endif$
|
||||
|
||||
\begin{document}
|
||||
$for(include-before)$
|
||||
$include-before$
|
||||
$endfor$
|
||||
\begin{frontmatter}
|
||||
|
||||
\title{$title$$if(subtitle)$\\\Large{$subtitle$}$endif$}
|
||||
$for(author)$\author$if(authorwithinstitute)$[$for(author.institute)$$author.institute$$sep$,$endfor$]$endif${$author.name$$if(author.correspondence)$\corref{corrauth}$endif$$if(author.equalcontribution)$\corref{eqcon}$endif$ $if(author.footnote)$\fnref{$author.footnote$}$endif$}$if(author.email)$\ead{$author.email$}$endif$$endfor$
|
||||
$if(authorwithinstitute)$ $for(institute)$ \address[$institute.id$]{$institute.name$} $endfor$ $endif$
|
||||
% generate corresponding authors.
|
||||
% \StrBehind is from xstring package
|
||||
\ifnum \hascorr=1
|
||||
\def\corrauths{
|
||||
$for(author)$$if(author.correspondence)$and $author.name$ ($author.email$) $endif$$endfor$}
|
||||
\cortext[corrauth]{Corresponding to \StrBehind*{\corrauths}{and }.}
|
||||
\fi
|
||||
|
||||
% generate equal contributing authors.
|
||||
\ifnum \haseqc=1
|
||||
\def\eqa{$for(author)$$if(author.equalcontribution)$and $author.name$ $endif$$endfor$}
|
||||
\cortext[eqcon]{\StrBehind*{\eqa}{and } are equally contributed to this work.}
|
||||
\fi
|
||||
|
||||
$for(footnote)$
|
||||
\fntext[$footnote.id$]{$footnote.text$}
|
||||
$endfor$
|
||||
|
||||
$if(abstract)$
|
||||
\begin{abstract}
|
||||
$abstract$
|
||||
\end{abstract}
|
||||
$if(keywords)$
|
||||
\begin{keyword}
|
||||
$for(keywords/allbutlast)$$keywords$ \sep $endfor$
|
||||
$for(keywords/last)$$keywords$$endfor$
|
||||
\end{keyword}
|
||||
$endif$
|
||||
$endif$
|
||||
\end{frontmatter}
|
||||
|
||||
$body$
|
||||
|
||||
$if(authorwithinstitute)$
|
||||
$else$
|
||||
\section{Author Information}
|
||||
|
||||
\getcorrauthinfo{}
|
||||
|
||||
\getotherauthinfo{}
|
||||
|
||||
$endif$
|
||||
|
||||
|
||||
$if(natbib)$
|
||||
$if(bibliography)$
|
||||
$if(biblio-title)$
|
||||
$if(book-class)$
|
||||
\renewcommand\bibname{$biblio-title$}
|
||||
$else$
|
||||
\renewcommand\refname{$biblio-title$}
|
||||
$endif$
|
||||
$endif$
|
||||
\bibliography{$bibliography$}
|
||||
$endif$
|
||||
$endif$
|
||||
|
||||
$for(include-after)$
|
||||
$include-after$
|
||||
$endfor$
|
||||
\end{document}
|
||||
239
_extensions/inst/tex/elsevier-harvard.csl
Normal file
239
_extensions/inst/tex/elsevier-harvard.csl
Normal file
@@ -0,0 +1,239 @@
|
||||
<?xml version="1.0" encoding="utf-8"?>
|
||||
<style xmlns="http://purl.org/net/xbiblio/csl" class="in-text" version="1.0" demote-non-dropping-particle="never" default-locale="en-US">
|
||||
<info>
|
||||
<title>Elsevier - Harvard (with titles)</title>
|
||||
<id>http://www.zotero.org/styles/elsevier-harvard</id>
|
||||
<link href="http://www.zotero.org/styles/elsevier-harvard" rel="self"/>
|
||||
<link href="http://www.zotero.org/styles/ecology-letters" rel="template"/>
|
||||
<link href="http://www.elsevier.com/journals/biological-conservation/0006-3207/guide-for-authors#68000" rel="documentation"/>
|
||||
<author>
|
||||
<name>David Kaplan</name>
|
||||
<email>david.kaplan@ird.fr</email>
|
||||
</author>
|
||||
<contributor>
|
||||
<name>Simon Kornblith</name>
|
||||
<email>simon@simonster.com</email>
|
||||
</contributor>
|
||||
<contributor>
|
||||
<name>Bruce D'Arcus</name>
|
||||
</contributor>
|
||||
<contributor>
|
||||
<name>Curtis M. Humphrey</name>
|
||||
</contributor>
|
||||
<contributor>
|
||||
<name>Richard Karnesky</name>
|
||||
<email>karnesky+zotero@gmail.com</email>
|
||||
<uri>http://arc.nucapt.northwestern.edu/Richard_Karnesky</uri>
|
||||
</contributor>
|
||||
<contributor>
|
||||
<name>Sebastian Karcher</name>
|
||||
</contributor>
|
||||
<category citation-format="author-date"/>
|
||||
<category field="biology"/>
|
||||
<category field="generic-base"/>
|
||||
<updated>2014-03-04T00:09:00+00:00</updated>
|
||||
<rights license="http://creativecommons.org/licenses/by-sa/3.0/">This work is licensed under a Creative Commons Attribution-ShareAlike 3.0 License</rights>
|
||||
</info>
|
||||
<macro name="container">
|
||||
<choose>
|
||||
<if type="chapter paper-conference" match="any">
|
||||
<text term="in" prefix=", " suffix=": "/>
|
||||
<names variable="editor translator" delimiter=", " suffix=", ">
|
||||
<name name-as-sort-order="all" sort-separator=", " initialize-with="." delimiter=", " delimiter-precedes-last="always"/>
|
||||
<label form="short" text-case="capitalize-first" prefix=" (" suffix=")"/>
|
||||
</names>
|
||||
<group delimiter=", ">
|
||||
<text variable="container-title" text-case="title"/>
|
||||
<text variable="collection-title" text-case="title"/>
|
||||
</group>
|
||||
</if>
|
||||
<else-if type="bill book graphic legal_case legislation motion_picture report song" match="any">
|
||||
<group prefix=", " delimiter=", ">
|
||||
<text variable="container-title"/>
|
||||
<text variable="collection-title"/>
|
||||
</group>
|
||||
</else-if>
|
||||
<else>
|
||||
<group prefix=". " delimiter=", ">
|
||||
<text variable="container-title" form="short"/>
|
||||
<text variable="collection-title"/>
|
||||
</group>
|
||||
</else>
|
||||
</choose>
|
||||
</macro>
|
||||
<macro name="author">
|
||||
<names variable="author">
|
||||
<name name-as-sort-order="all" sort-separator=", " initialize-with="." delimiter=", " delimiter-precedes-last="always"/>
|
||||
<label form="short" prefix=" (" suffix=")" text-case="capitalize-first"/>
|
||||
<substitute>
|
||||
<names variable="editor"/>
|
||||
<names variable="translator"/>
|
||||
<text macro="title"/>
|
||||
</substitute>
|
||||
</names>
|
||||
</macro>
|
||||
<macro name="author-short">
|
||||
<names variable="author">
|
||||
<name form="short" and="text" delimiter=", " initialize-with=". "/>
|
||||
<substitute>
|
||||
<names variable="editor"/>
|
||||
<names variable="translator"/>
|
||||
<choose>
|
||||
<if type="bill book graphic legal_case legislation motion_picture report song" match="any">
|
||||
<text variable="title" form="short" font-style="italic"/>
|
||||
</if>
|
||||
<else>
|
||||
<text variable="title" form="short" quotes="true"/>
|
||||
</else>
|
||||
</choose>
|
||||
</substitute>
|
||||
</names>
|
||||
</macro>
|
||||
<macro name="access">
|
||||
<choose>
|
||||
<if variable="DOI">
|
||||
<text variable="DOI" prefix="https://doi.org/"/>
|
||||
</if>
|
||||
<else-if type="webpage post-weblog" match="any">
|
||||
<group delimiter=" ">
|
||||
<text value="URL"/>
|
||||
<text variable="URL"/>
|
||||
<group prefix="(" suffix=").">
|
||||
<text term="accessed" suffix=" "/>
|
||||
<date variable="accessed">
|
||||
<date-part name="month" form="numeric" suffix="."/>
|
||||
<date-part name="day" suffix="."/>
|
||||
<date-part name="year" form="short"/>
|
||||
</date>
|
||||
</group>
|
||||
</group>
|
||||
</else-if>
|
||||
</choose>
|
||||
</macro>
|
||||
<macro name="title">
|
||||
<choose>
|
||||
<if type="report thesis" match="any">
|
||||
<text variable="title"/>
|
||||
<group prefix=" (" suffix=")" delimiter=" ">
|
||||
<text variable="genre"/>
|
||||
<text variable="number" prefix="No. "/>
|
||||
</group>
|
||||
</if>
|
||||
<else-if type="bill book graphic legal_case legislation motion_picture report song speech" match="any">
|
||||
<text variable="title"/>
|
||||
<text macro="edition" prefix=", "/>
|
||||
</else-if>
|
||||
<else-if type="webpage">
|
||||
<text variable="title"/>
|
||||
<text value="WWW Document" prefix=" [" suffix="]"/>
|
||||
</else-if>
|
||||
<else>
|
||||
<text variable="title"/>
|
||||
</else>
|
||||
</choose>
|
||||
</macro>
|
||||
<macro name="publisher">
|
||||
<group delimiter=", ">
|
||||
<text variable="publisher"/>
|
||||
<text variable="publisher-place"/>
|
||||
</group>
|
||||
</macro>
|
||||
<macro name="event">
|
||||
<choose>
|
||||
<if variable="event">
|
||||
<text term="presented at" text-case="capitalize-first" suffix=" "/>
|
||||
<text variable="event"/>
|
||||
</if>
|
||||
</choose>
|
||||
</macro>
|
||||
<macro name="issued">
|
||||
<choose>
|
||||
<if variable="issued">
|
||||
<date variable="issued">
|
||||
<date-part name="year"/>
|
||||
</date>
|
||||
</if>
|
||||
<else>
|
||||
<text term="no date" form="short"/>
|
||||
</else>
|
||||
</choose>
|
||||
</macro>
|
||||
<macro name="edition">
|
||||
<group delimiter=" ">
|
||||
<choose>
|
||||
<if is-numeric="edition">
|
||||
<number variable="edition" form="ordinal"/>
|
||||
</if>
|
||||
<else>
|
||||
<text variable="edition" suffix="."/>
|
||||
</else>
|
||||
</choose>
|
||||
<text value="ed"/>
|
||||
</group>
|
||||
</macro>
|
||||
<macro name="locators">
|
||||
<choose>
|
||||
<if type="article-journal article-magazine article-newspaper" match="any">
|
||||
<group prefix=" " delimiter=", ">
|
||||
<group>
|
||||
<text variable="volume"/>
|
||||
</group>
|
||||
<text variable="page"/>
|
||||
</group>
|
||||
</if>
|
||||
<else-if type="bill book graphic legal_case legislation motion_picture report song thesis" match="any">
|
||||
<group delimiter=", " prefix=". ">
|
||||
<text macro="event"/>
|
||||
<text macro="publisher"/>
|
||||
</group>
|
||||
</else-if>
|
||||
<else-if type="chapter paper-conference" match="any">
|
||||
<group delimiter=", " prefix=". ">
|
||||
<text macro="event"/>
|
||||
<text macro="publisher"/>
|
||||
<group>
|
||||
<label variable="page" form="short" suffix=" "/>
|
||||
<text variable="page"/>
|
||||
</group>
|
||||
</group>
|
||||
</else-if>
|
||||
<else-if type="patent">
|
||||
<text variable="number" prefix=". "/>
|
||||
</else-if>
|
||||
</choose>
|
||||
</macro>
|
||||
<citation et-al-min="3" et-al-use-first="1" disambiguate-add-givenname="true" disambiguate-add-year-suffix="true" collapse="year" cite-group-delimiter=", ">
|
||||
<sort>
|
||||
<key macro="author"/>
|
||||
<key macro="issued" sort="descending"/>
|
||||
</sort>
|
||||
<layout prefix="(" suffix=")" delimiter="; ">
|
||||
<group delimiter=", ">
|
||||
<text macro="author-short"/>
|
||||
<text macro="issued"/>
|
||||
<group delimiter=" ">
|
||||
<label variable="locator" form="short"/>
|
||||
<text variable="locator"/>
|
||||
</group>
|
||||
</group>
|
||||
</layout>
|
||||
</citation>
|
||||
<bibliography hanging-indent="true" entry-spacing="0" line-spacing="1">
|
||||
<sort>
|
||||
<key macro="author"/>
|
||||
<key macro="issued" sort="descending"/>
|
||||
</sort>
|
||||
<layout>
|
||||
<group suffix=".">
|
||||
<text macro="author" suffix=","/>
|
||||
<text macro="issued" prefix=" "/>
|
||||
<group prefix=". ">
|
||||
<text macro="title"/>
|
||||
<text macro="container"/>
|
||||
<text macro="locators"/>
|
||||
</group>
|
||||
</group>
|
||||
<text macro="access" prefix=". "/>
|
||||
</layout>
|
||||
</bibliography>
|
||||
</style>
|
||||
17
_extensions/inst/tex/nature-biotechnology.csl
Normal file
17
_extensions/inst/tex/nature-biotechnology.csl
Normal file
@@ -0,0 +1,17 @@
|
||||
<?xml version="1.0" encoding="utf-8"?>
|
||||
<style xmlns="http://purl.org/net/xbiblio/csl" version="1.0" default-locale="en-GB">
|
||||
<!-- Generated with https://github.com/citation-style-language/utilities/tree/master/generate_dependent_styles/data/npg -->
|
||||
<info>
|
||||
<title>Nature Biotechnology</title>
|
||||
<id>http://www.zotero.org/styles/nature-biotechnology</id>
|
||||
<link href="http://www.zotero.org/styles/nature-biotechnology" rel="self"/>
|
||||
<link href="http://www.zotero.org/styles/nature" rel="independent-parent"/>
|
||||
<link href="http://www.nature.com/nbt/pdf/gta.pdf" rel="documentation"/>
|
||||
<category citation-format="numeric"/>
|
||||
<category field="biology"/>
|
||||
<issn>1087-0156</issn>
|
||||
<eissn>1546-1696</eissn>
|
||||
<updated>2014-06-17T02:29:16+00:00</updated>
|
||||
<rights license="http://creativecommons.org/licenses/by-sa/3.0/">This work is licensed under a Creative Commons Attribution-ShareAlike 3.0 License</rights>
|
||||
</info>
|
||||
</style>
|
||||
154
_extensions/inst/tex/nature.csl
Normal file
154
_extensions/inst/tex/nature.csl
Normal file
@@ -0,0 +1,154 @@
|
||||
<?xml version="1.0" encoding="utf-8"?>
|
||||
<style xmlns="http://purl.org/net/xbiblio/csl" class="in-text" version="1.0" demote-non-dropping-particle="sort-only" default-locale="en-GB">
|
||||
<info>
|
||||
<title>Nature</title>
|
||||
<id>http://www.zotero.org/styles/nature</id>
|
||||
<link href="http://www.zotero.org/styles/nature" rel="self"/>
|
||||
<link href="http://www.nature.com/nature/authors/gta/index.html#a5.4" rel="documentation"/>
|
||||
<link href="http://www.nature.com/srep/publish/guidelines#references" rel="documentation"/>
|
||||
<author>
|
||||
<name>Michael Berkowitz</name>
|
||||
<email>mberkowi@gmu.edu</email>
|
||||
</author>
|
||||
<category citation-format="numeric"/>
|
||||
<category field="science"/>
|
||||
<category field="generic-base"/>
|
||||
<issn>0028-0836</issn>
|
||||
<eissn>1476-4687</eissn>
|
||||
<updated>2022-07-02T13:18:26+00:00</updated>
|
||||
<rights license="http://creativecommons.org/licenses/by-sa/3.0/">This work is licensed under a Creative Commons Attribution-ShareAlike 3.0 License</rights>
|
||||
</info>
|
||||
<macro name="title">
|
||||
<choose>
|
||||
<if type="bill book graphic legal_case legislation motion_picture report song" match="any">
|
||||
<text variable="title" font-style="italic"/>
|
||||
</if>
|
||||
<else>
|
||||
<text variable="title"/>
|
||||
</else>
|
||||
</choose>
|
||||
</macro>
|
||||
<macro name="author">
|
||||
<names variable="author">
|
||||
<name sort-separator=", " delimiter=", " and="symbol" initialize-with=". " delimiter-precedes-last="never" name-as-sort-order="all"/>
|
||||
<label form="short" prefix=", "/>
|
||||
<et-al font-style="italic"/>
|
||||
</names>
|
||||
</macro>
|
||||
<macro name="access">
|
||||
<choose>
|
||||
<if variable="volume" type="article" match="any"/>
|
||||
<else-if variable="DOI">
|
||||
<text variable="DOI" prefix="doi:"/>
|
||||
</else-if>
|
||||
</choose>
|
||||
</macro>
|
||||
<macro name="issuance">
|
||||
<choose>
|
||||
<if type="bill book graphic legal_case legislation motion_picture song thesis chapter paper-conference" match="any">
|
||||
<group delimiter="; " suffix=".">
|
||||
<group delimiter=", " prefix="(" suffix=")">
|
||||
<text variable="publisher" form="long"/>
|
||||
<date variable="issued">
|
||||
<date-part name="year"/>
|
||||
</date>
|
||||
</group>
|
||||
</group>
|
||||
</if>
|
||||
<else-if type="article">
|
||||
<group delimiter=" ">
|
||||
<choose>
|
||||
<if variable="genre" match="any">
|
||||
<text variable="genre" text-case="capitalize-first"/>
|
||||
</if>
|
||||
<else>
|
||||
<text term="article" text-case="capitalize-first"/>
|
||||
</else>
|
||||
</choose>
|
||||
<text term="at"/>
|
||||
<choose>
|
||||
<if variable="DOI" match="any">
|
||||
<text variable="DOI" prefix="https://doi.org/"/>
|
||||
</if>
|
||||
<else>
|
||||
<text variable="URL"/>
|
||||
</else>
|
||||
</choose>
|
||||
<date date-parts="year" form="text" variable="issued" prefix="(" suffix=")"/>
|
||||
</group>
|
||||
</else-if>
|
||||
<else-if type="report webpage post post-weblog" match="any">
|
||||
<group delimiter=" ">
|
||||
<text variable="URL"/>
|
||||
<date date-parts="year" form="text" variable="issued" prefix="(" suffix=")"/>
|
||||
</group>
|
||||
</else-if>
|
||||
<else>
|
||||
<date variable="issued" prefix="(" suffix=")">
|
||||
<date-part name="year"/>
|
||||
</date>
|
||||
</else>
|
||||
</choose>
|
||||
</macro>
|
||||
<macro name="container-title">
|
||||
<choose>
|
||||
<if type="article-journal">
|
||||
<text variable="container-title" font-style="italic" form="short"/>
|
||||
</if>
|
||||
<else>
|
||||
<text variable="container-title" font-style="italic"/>
|
||||
</else>
|
||||
</choose>
|
||||
</macro>
|
||||
<macro name="editor">
|
||||
<choose>
|
||||
<if type="chapter paper-conference" match="any">
|
||||
<names variable="editor" prefix="(" suffix=")">
|
||||
<label form="short" suffix=" "/>
|
||||
<name and="symbol" delimiter-precedes-last="never" initialize-with=". " name-as-sort-order="all"/>
|
||||
</names>
|
||||
</if>
|
||||
</choose>
|
||||
</macro>
|
||||
<macro name="volume">
|
||||
<choose>
|
||||
<if type="article-journal" match="any">
|
||||
<text variable="volume" font-weight="bold" suffix=","/>
|
||||
</if>
|
||||
<else>
|
||||
<group delimiter=" ">
|
||||
<label variable="volume" form="short"/>
|
||||
<text variable="volume"/>
|
||||
</group>
|
||||
</else>
|
||||
</choose>
|
||||
</macro>
|
||||
<citation collapse="citation-number">
|
||||
<sort>
|
||||
<key variable="citation-number"/>
|
||||
</sort>
|
||||
<layout vertical-align="sup" delimiter=",">
|
||||
<text variable="citation-number"/>
|
||||
</layout>
|
||||
</citation>
|
||||
<bibliography et-al-min="6" et-al-use-first="1" second-field-align="flush" entry-spacing="0" line-spacing="2">
|
||||
<layout suffix=".">
|
||||
<text variable="citation-number" suffix="."/>
|
||||
<group delimiter=" ">
|
||||
<text macro="author" suffix="."/>
|
||||
<text macro="title" suffix="."/>
|
||||
<choose>
|
||||
<if type="chapter paper-conference" match="any">
|
||||
<text term="in"/>
|
||||
</if>
|
||||
</choose>
|
||||
<text macro="container-title"/>
|
||||
<text macro="editor"/>
|
||||
<text macro="volume"/>
|
||||
<text variable="page"/>
|
||||
<text macro="issuance"/>
|
||||
<text macro="access"/>
|
||||
</group>
|
||||
</layout>
|
||||
</bibliography>
|
||||
</style>
|
||||
1359
_extensions/inst/tex/supp.cls
Normal file
1359
_extensions/inst/tex/supp.cls
Normal file
File diff suppressed because it is too large
Load Diff
432
_extensions/inst/tex/supp.tex
Normal file
432
_extensions/inst/tex/supp.tex
Normal file
@@ -0,0 +1,432 @@
|
||||
$-- Keeping in template layout for backward compatibility
|
||||
\documentclass[$if(layout)$$layout$$else$$for(classoption)$$classoption$$sep$,$endfor$$endif$]{_extensions/inst/tex/supp} %review=doublespace preprint=single 5p=2 column
|
||||
%%% Begin My package additions %%%%%%%%%%%%%%%%%%%
|
||||
\usepackage[hyphens]{url}
|
||||
$if(journal)$
|
||||
\journal{$journal$} % Sets Journal name
|
||||
$endif$
|
||||
\usepackage{lineno} % add
|
||||
$if(linenumbers)$
|
||||
\linenumbers % turns line numbering on
|
||||
$endif$
|
||||
\usepackage{graphicx}
|
||||
\usepackage{xstring}
|
||||
\usepackage{xcolor}
|
||||
%%%%%%%%%%%%%%%% end my additions to header
|
||||
\usepackage[T1]{fontenc}
|
||||
\usepackage{lmodern}
|
||||
\usepackage{amssymb,amsmath}
|
||||
\usepackage{ifxetex,ifluatex}
|
||||
\usepackage{fixltx2e} % provides \textsubscript
|
||||
% use upquote if available, for straight quotes in verbatim environments
|
||||
\IfFileExists{upquote.sty}{\usepackage{upquote}}{}
|
||||
\ifnum 0\ifxetex 1\fi\ifluatex 1\fi=0 % if pdftex
|
||||
\usepackage[utf8]{inputenc}
|
||||
$if(euro)$
|
||||
\usepackage{eurosym}
|
||||
$endif$
|
||||
\else % if luatex or xelatex
|
||||
\usepackage{fontspec}
|
||||
\ifxetex
|
||||
\usepackage{xltxtra,xunicode}
|
||||
\fi
|
||||
\defaultfontfeatures{Mapping=tex-text,Scale=MatchLowercase}
|
||||
\newcommand{\euro}{€}
|
||||
$if(mainfont)$
|
||||
\setmainfont{$mainfont$}
|
||||
$endif$
|
||||
$if(sansfont)$
|
||||
\setsansfont{$sansfont$}
|
||||
$endif$
|
||||
$if(monofont)$
|
||||
\setmonofont{$monofont$}
|
||||
$endif$
|
||||
$if(mathfont)$
|
||||
\setmathfont{$mathfont$}
|
||||
$endif$
|
||||
\fi
|
||||
% use microtype if available
|
||||
\IfFileExists{microtype.sty}{\usepackage{microtype}}{}
|
||||
$if(geometry)$
|
||||
\usepackage[$for(geometry)$$geometry$$sep$,$endfor$]{geometry}
|
||||
$endif$
|
||||
$if(natbib)$
|
||||
\usepackage{natbib}
|
||||
\setcitestyle{$natbiboptions$}
|
||||
\bibliographystyle{$if(biblio-style)$$biblio-style$$else$plainnat$endif$}
|
||||
$endif$
|
||||
$if(listings)$
|
||||
\usepackage{listings}
|
||||
$endif$
|
||||
$if(lhs)$
|
||||
\lstnewenvironment{code}{\lstset{language=Haskell,basicstyle=\small\ttfamily}}{}
|
||||
$endif$
|
||||
$if(verbatim-in-note)$
|
||||
\usepackage{fancyvrb}
|
||||
$endif$
|
||||
$if(graphics)$
|
||||
\usepackage{graphicx}
|
||||
$endif$
|
||||
\ifxetex
|
||||
\usepackage[setpagesize=false, % page size defined by xetex
|
||||
unicode=false, % unicode breaks when used with xetex
|
||||
xetex]{hyperref}
|
||||
\else
|
||||
\usepackage[unicode=true]{hyperref}
|
||||
\fi
|
||||
\hypersetup{breaklinks=true,
|
||||
bookmarks=true,
|
||||
pdfauthor={$author-meta$},
|
||||
pdftitle={$title-meta$},
|
||||
colorlinks=$if(colorlinks)$true$else$false$endif$,
|
||||
urlcolor=$if(urlcolor)$$urlcolor$$else$blue$endif$,
|
||||
linkcolor=$if(linkcolor)$$linkcolor$$else$magenta$endif$,
|
||||
pdfborder={0 0 0}}
|
||||
\urlstyle{same} % don't use monospace font for urls
|
||||
$if(links-as-notes)$
|
||||
% Make links footnotes instead of hotlinks:
|
||||
\renewcommand{\href}[2]{#2\footnote{\url{#1}}}
|
||||
$endif$
|
||||
$if(strikeout)$
|
||||
\usepackage[normalem]{ulem}
|
||||
% avoid problems with \sout in headers with hyperref:
|
||||
\pdfstringdefDisableCommands{\renewcommand{\sout}{}}
|
||||
$endif$
|
||||
$if(numbersections)$
|
||||
\setcounter{secnumdepth}{5}
|
||||
$else$
|
||||
\setcounter{secnumdepth}{0}
|
||||
$endif$
|
||||
$if(verbatim-in-note)$
|
||||
\VerbatimFootnotes % allows verbatim text in footnotes
|
||||
$endif$
|
||||
$if(lang)$
|
||||
\ifxetex
|
||||
\usepackage{polyglossia}
|
||||
\setmainlanguage{$mainlang$}
|
||||
\else
|
||||
\usepackage[$lang$]{babel}
|
||||
\fi
|
||||
$endif$
|
||||
% Pandoc toggle for numbering sections (defaults to be off)
|
||||
$if(numbersections)$
|
||||
$else$
|
||||
\setcounter{secnumdepth}{0}
|
||||
$endif$
|
||||
$if(highlighting-macros)$
|
||||
% Pandoc syntax highlighting
|
||||
$highlighting-macros$
|
||||
$endif$
|
||||
% tightlist command for lists without linebreak
|
||||
\providecommand{\tightlist}{%
|
||||
\setlength{\itemsep}{0pt}\setlength{\parskip}{0pt}}
|
||||
$if(tables)$
|
||||
% From pandoc table feature
|
||||
\usepackage{longtable,booktabs,array}
|
||||
$if(multirow)$
|
||||
\usepackage{multirow}
|
||||
$endif$
|
||||
\usepackage{calc} % for calculating minipage widths
|
||||
% Correct order of tables after \paragraph or \subparagraph
|
||||
\usepackage{etoolbox}
|
||||
\makeatletter
|
||||
\patchcmd\longtable{\par}{\if@noskipsec\mbox{}\fi\par}{}{}
|
||||
\makeatother
|
||||
% Allow footnotes in longtable head/foot
|
||||
\IfFileExists{footnotehyper.sty}{\usepackage{footnotehyper}}{\usepackage{footnote}}
|
||||
\makesavenoteenv{longtable}
|
||||
$endif$
|
||||
$if(csl-refs)$
|
||||
% Pandoc citation processing
|
||||
\newlength{\cslhangindent}
|
||||
\setlength{\cslhangindent}{1.5em}
|
||||
\newlength{\csllabelwidth}
|
||||
\setlength{\csllabelwidth}{3em}
|
||||
\newlength{\cslentryspacingunit} % times entry-spacing
|
||||
\setlength{\cslentryspacingunit}{\parskip}
|
||||
% for Pandoc 2.8 to 2.10.1
|
||||
\newenvironment{cslreferences}%
|
||||
{$if(csl-hanging-indent)$\setlength{\parindent}{0pt}%
|
||||
\everypar{\setlength{\hangindent}{\cslhangindent}}\ignorespaces$endif$}%
|
||||
{\par}
|
||||
% For Pandoc 2.11+
|
||||
\newenvironment{CSLReferences}[2] % #1 hanging-ident, #2 entry spacing
|
||||
{% don't indent paragraphs
|
||||
\setlength{\parindent}{0pt}
|
||||
% turn on hanging indent if param 1 is 1
|
||||
\ifodd #1
|
||||
\let\oldpar\par
|
||||
\def\par{\hangindent=\cslhangindent\oldpar}
|
||||
\fi
|
||||
% set entry spacing
|
||||
\setlength{\parskip}{#2\cslentryspacingunit}
|
||||
}%
|
||||
{}
|
||||
\usepackage{calc}
|
||||
\newcommand{\CSLBlock}[1]{#1\hfill\break}
|
||||
\newcommand{\CSLLeftMargin}[1]{\parbox[t]{\csllabelwidth}{#1}}
|
||||
\newcommand{\CSLRightInline}[1]{\parbox[t]{\linewidth - \csllabelwidth}{#1}\break}
|
||||
\newcommand{\CSLIndent}[1]{\hspace{\cslhangindent}#1}
|
||||
$endif$
|
||||
$for(header-includes)$
|
||||
$header-includes$
|
||||
$endfor$
|
||||
|
||||
|
||||
\usepackage{xifthen}
|
||||
% set special color for EST
|
||||
\ifthenelse{\equal{$journal$}{Environmental Science \& Technology}}
|
||||
{\definecolor{seccol}{RGB}{56, 95, 66}}
|
||||
{\definecolor{seccol}{RGB}{0, 0, 0}}
|
||||
|
||||
$if(uppersections)$
|
||||
\usepackage{titlesec}
|
||||
\titleformat{\section}
|
||||
{\color{seccol}\large\bfseries\MakeUppercase}{\thesection}{1em}{}
|
||||
$endif$
|
||||
$if(sectiononnewpage)$
|
||||
\AddToHook{cmd/section/before}{\clearpage}
|
||||
$endif$
|
||||
|
||||
\usepackage{enumitem}
|
||||
\usepackage{fontspec}
|
||||
\usepackage{float}
|
||||
\setmainfont{Helvetica}
|
||||
\usepackage[normalem]{ulem}
|
||||
\usepackage{hyperref}
|
||||
\usepackage{nameref} %needed by zref-xr
|
||||
\usepackage{zref-xr,zref-hyperref,zref-user}
|
||||
\usepackage{xr-hyper}
|
||||
|
||||
% force to use \zref
|
||||
$if(msname)$
|
||||
\def\msname{$msname$}
|
||||
\zexternaldocument*{\msname}
|
||||
\renewcommand{\ref}{\zref}
|
||||
$endif$
|
||||
$if(smname)$
|
||||
\def\smname{$smname$}
|
||||
\zexternaldocument*{\smname}
|
||||
$endif$
|
||||
|
||||
\zxrsetup{toltxlabel=true}
|
||||
{\catcode`\#=12 \gdef\hashchar{#1}}
|
||||
\makeatletter
|
||||
\newcommand\hzref[1]{\edef\next{%
|
||||
\noexpand\href{%
|
||||
\zref@extractdefault{#1}{url}{}%
|
||||
\zref@ifrefcontainsprop{#1}{anchor}{%
|
||||
\hashchar\zref@extract{#1}{anchor}}{}}%
|
||||
{\noexpand\zref{#1}}}\next}
|
||||
\makeatother
|
||||
|
||||
|
||||
|
||||
$if(revision)$
|
||||
% \usepackage{xcolor}
|
||||
\usepackage{adjustbox}
|
||||
\usepackage{mdframed}
|
||||
\newmdenv[topline=false,
|
||||
leftline=true,
|
||||
bottomline=false,
|
||||
rightline=false,
|
||||
linewidth=3pt,
|
||||
%backgroundcolor=lightgray,
|
||||
linecolor=gray!30,
|
||||
backgroundcolor=gray!5,
|
||||
skipabove=\topsep,
|
||||
skipbelow=\topsep,
|
||||
leftmargin=0pt,
|
||||
rightmargin=0pt,
|
||||
innertopmargin=0pt,
|
||||
innerbottommargin=0pt
|
||||
]{refquote}
|
||||
\newmdenv[topline=false,
|
||||
leftline=true,
|
||||
bottomline=false,
|
||||
rightline=false,
|
||||
linewidth=3pt,
|
||||
%backgroundcolor=lightgray,
|
||||
backgroundcolor=red!3!white,
|
||||
linecolor=red!30!white,
|
||||
skipabove=\topsep,
|
||||
skipbelow=\topsep,
|
||||
leftmargin=0pt,
|
||||
rightmargin=0pt,
|
||||
innertopmargin=10pt,
|
||||
innerbottommargin=10pt
|
||||
]{question}
|
||||
\setenumerate{labelsep=*, leftmargin=1.0pc}
|
||||
% setup hyperlink for page and line number
|
||||
\def\msname{$if(msname)$$msname$$else$MS$endif$}
|
||||
\def\smname{$if(smname)$$smname$$else$SM$endif$}
|
||||
\setenumerate{labelsep=*, leftmargin=1.0pc}
|
||||
%\zexternaldocument*{ManuscriptNew\veraa}
|
||||
\zexternaldocument*{\msname}
|
||||
\zexternaldocument*{\smname}
|
||||
\newcommand{\hlabel}[1]{\label{#1}\hypertarget{#1}{
|
||||
\linelabel{line:#1}}}
|
||||
%\externaldocument[si-]{\smname\veraa}[\smname\veraa.pdf]
|
||||
\makeatletter
|
||||
\newcommand{\clab}[2]{%
|
||||
\protected@write\@auxout{\let\clab\@secondoftwo}{
|
||||
\string\newlabel{r:#1}{{#2}{}}}%
|
||||
\hlabel{#1}#2\hlabel{#1end}}
|
||||
\makeatother
|
||||
\newcommand{\zhypera}[1]{\href[pdfnewwindow]{\msname.pdf\##1}{\\[1ex]\textbf{Page \zpageref{#1}, Line
|
||||
\zref{line:#1}--\zref{line:#1end}:}\\}}
|
||||
\newcommand{\cref}[1]{\begin{refquote}\zhypera{#1}{\zref{r:#1}}\\[-0.5ex]\end{refquote}}
|
||||
% \newenvironment{ra}[1][\unskip]{\par \noindent \\[-1ex] \textbf{Response/Action:}\par\bf}{\ \\}
|
||||
\renewenvironment{quote}{\begin{question}}{\end{question}}
|
||||
% \renewenvironment{verbatim}{\begin{ra}}{\end{ra}}
|
||||
$endif$
|
||||
|
||||
|
||||
% def default corresponding authors and equal contributing authors variables
|
||||
\def\hascorr{0}
|
||||
\def\haseqc{0}
|
||||
% check if corresponding author(s) and equal contributing authors are available
|
||||
$for(author)$$if(author.correspondence)$\def\hascorr{1}$endif$$if(author.equalcontribution)$\def\haseqc{1}$endif$ $endfor$
|
||||
|
||||
\newcommand{\getcorrauthinfo}{
|
||||
\subsection{Corresponding Author(s)}
|
||||
\def\a{} \def\b{} \def\c{}
|
||||
\hspace{-2.2em}
|
||||
$for(author)$
|
||||
$if(author.correspondence)$
|
||||
\textbf{$author.name$:}
|
||||
\vspace{-1em}
|
||||
\begin{enumerate}[labelindent=-12pt,label=\arabic*.,itemindent=0em,leftmargin=!, itemsep = -10pt]
|
||||
$for(author.institute)$ \def\a{$author.institute$}
|
||||
$for(institute)$ \def\b{$institute.id$} \def\c{$institute.name$}
|
||||
\ifx \a\b \item \c; \fi
|
||||
$endfor$
|
||||
$endfor$
|
||||
$if(author.email)$\item email: $author.email$;$endif$
|
||||
$if(author.orcid)$\item orcid: $author.orcid$;$endif$
|
||||
$if(author.tel)$\item Tel: $author.tel$;$endif$
|
||||
$if(author.fax)$\item Fax: $author.fax$$endif$
|
||||
\end{enumerate}
|
||||
$endif$
|
||||
$endfor$
|
||||
}
|
||||
|
||||
\newcommand{\getotherauthinfo}{
|
||||
\subsection{Author(s)}
|
||||
\def\a{} \def\b{} \def\c{}
|
||||
\hspace{-2.2em}
|
||||
$for(author)$
|
||||
$if(author.correspondence)$
|
||||
$else$
|
||||
\textbf{$author.name$:}
|
||||
\vspace{-1em}
|
||||
\begin{enumerate}[labelindent=-12pt,label=\arabic*.,itemindent=0em,leftmargin=!, itemsep = -10pt]
|
||||
$for(author.institute)$ \def\a{$author.institute$} $for(institute)$ \def\b{$institute.id$} \def\c{$institute.name$}
|
||||
\ifx \a\b \item \c; \fi
|
||||
$endfor$
|
||||
$endfor$
|
||||
$if(author.email)$\item email: $author.email$;$endif$
|
||||
$if(author.orcid)$\item orcid: $author.orcid$;$endif$
|
||||
$if(author.tel)$\item Tel: $author.tel$;$endif$
|
||||
$if(author.fax)$\item Fax: $author.fax$$endif$
|
||||
\end{enumerate}
|
||||
$endif$
|
||||
$endfor$
|
||||
}
|
||||
|
||||
$preamble$
|
||||
|
||||
% remove the two line around Abstract
|
||||
$if(abstract)$
|
||||
$else$
|
||||
\makeatletter
|
||||
\renewcommand{\MaketitleBox}{%
|
||||
\resetTitleCounters
|
||||
\def\baselinestretch{1}%
|
||||
\begin{center}
|
||||
\def\baselinestretch{1}%
|
||||
\large \@title \par
|
||||
\vskip 18pt
|
||||
\normalsize\elsauthors \par
|
||||
\vskip 30pt
|
||||
\footnotesize \itshape \elsaddress \par
|
||||
\end{center}
|
||||
\vskip 12pt
|
||||
}
|
||||
\makeatother
|
||||
$endif$
|
||||
|
||||
\begin{document}
|
||||
$for(include-before)$
|
||||
$include-before$
|
||||
$endfor$
|
||||
\begin{frontmatter}
|
||||
|
||||
\title{$title$$if(subtitle)$\\\Large{$subtitle$}$endif$}
|
||||
$for(author)$\author$if(authorwithinstitute)$[$for(author.institute)$$author.institute$$sep$,$endfor$]$endif${$author.name$$if(author.correspondence)$\corref{corrauth}$endif$$if(author.equalcontribution)$\corref{eqcon}$endif$ $if(author.footnote)$\fnref{$author.footnote$}$endif$}$if(author.email)$\ead{$author.email$}$endif$$endfor$
|
||||
$if(authorwithinstitute)$ $for(institute)$ \address[$institute.id$]{$institute.name$} $endfor$ $endif$
|
||||
% generate corresponding authors.
|
||||
% \StrBehind is from xstring package
|
||||
\ifnum \hascorr=1
|
||||
\def\corrauths{
|
||||
$for(author)$$if(author.correspondence)$and $author.name$ ($author.email$) $endif$$endfor$}
|
||||
\cortext[corrauth]{Corresponding to \StrBehind*{\corrauths}{and }.}
|
||||
\fi
|
||||
|
||||
% generate equal contributing authors.
|
||||
\ifnum \haseqc=1
|
||||
\def\eqa{$for(author)$$if(author.equalcontribution)$and $author.name$ $endif$$endfor$}
|
||||
\cortext[eqcon]{\StrBehind*{\eqa}{and } are equally contributed to this work.}
|
||||
\fi
|
||||
|
||||
$for(footnote)$
|
||||
\fntext[$footnote.id$]{$footnote.text$}
|
||||
$endfor$
|
||||
|
||||
$if(abstract)$
|
||||
\begin{abstract}
|
||||
$abstract$
|
||||
\end{abstract}
|
||||
$if(keywords)$
|
||||
\begin{keyword}
|
||||
$for(keywords/allbutlast)$$keywords$ \sep $endfor$
|
||||
$for(keywords/last)$$keywords$$endfor$
|
||||
\end{keyword}
|
||||
$endif$
|
||||
$endif$
|
||||
\end{frontmatter}
|
||||
|
||||
$body$
|
||||
|
||||
$if(authorwithinstitute)$
|
||||
$else$
|
||||
\section{Author Information}
|
||||
|
||||
\getcorrauthinfo{}
|
||||
|
||||
\getotherauthinfo{}
|
||||
|
||||
\section{Notes}
|
||||
|
||||
The authors declare no competing financial interest.
|
||||
|
||||
$endif$
|
||||
|
||||
|
||||
$if(natbib)$
|
||||
$if(bibliography)$
|
||||
$if(biblio-title)$
|
||||
$if(book-class)$
|
||||
\renewcommand\bibname{$biblio-title$}
|
||||
$else$
|
||||
\renewcommand\refname{$biblio-title$}
|
||||
$endif$
|
||||
$endif$
|
||||
\bibliography{$bibliography$}
|
||||
$endif$
|
||||
$endif$
|
||||
|
||||
$for(include-after)$
|
||||
$include-after$
|
||||
$endfor$
|
||||
\end{document}
|
||||
181
_extensions/inst/tex/the-isme-j.csl
Normal file
181
_extensions/inst/tex/the-isme-j.csl
Normal file
@@ -0,0 +1,181 @@
|
||||
<?xml version="1.0" encoding="utf-8"?>
|
||||
<style xmlns="http://purl.org/net/xbiblio/csl" class="in-text" version="1.0" demote-non-dropping-particle="sort-only" default-locale="en-GB">
|
||||
<info>
|
||||
<title>The ISME Journal</title>
|
||||
<id>http://www.zotero.org/styles/the-isme-journal</id>
|
||||
<link href="http://www.zotero.org/styles/the-isme-journal" rel="self"/>
|
||||
<link href="http://www.zotero.org/styles/journal-of-frailty-and-aging" rel="template"/>
|
||||
<link href="http://www.nature.com/ismej/ismej_new_gta.pdf" rel="documentation"/>
|
||||
<author>
|
||||
<name>Patrick O'Brien</name>
|
||||
<email>obrienpat86@gmail.com</email>
|
||||
</author>
|
||||
<category citation-format="numeric"/>
|
||||
<category field="biology"/>
|
||||
<issn>1751-7362</issn>
|
||||
<eissn>1751-7370</eissn>
|
||||
<summary>The ISME Journal style, which is not the same as for Nature</summary>
|
||||
<updated>2018-03-19T15:30:26+00:00</updated>
|
||||
<rights license="http://creativecommons.org/licenses/by-sa/3.0/">This work is licensed under a Creative Commons Attribution-ShareAlike 3.0 License</rights>
|
||||
</info>
|
||||
<macro name="author">
|
||||
<names variable="author">
|
||||
<name sort-separator=" " initialize-with="" name-as-sort-order="all" delimiter=", " delimiter-precedes-last="always"/>
|
||||
<label form="short" strip-periods="true" prefix=" (" suffix=")"/>
|
||||
<substitute>
|
||||
<names variable="editor"/>
|
||||
<names variable="translator"/>
|
||||
</substitute>
|
||||
</names>
|
||||
</macro>
|
||||
<macro name="editor">
|
||||
<text term="in" text-case="capitalize-first" suffix=": "/>
|
||||
<names variable="editor">
|
||||
<name sort-separator=" " initialize-with="" name-as-sort-order="all" delimiter=", " delimiter-precedes-last="always"/>
|
||||
<label form="short" strip-periods="true" prefix=" (" suffix=")."/>
|
||||
</names>
|
||||
</macro>
|
||||
<macro name="edition">
|
||||
<choose>
|
||||
<if is-numeric="edition">
|
||||
<group delimiter=" ">
|
||||
<number variable="edition" form="ordinal"/>
|
||||
<text term="edition" form="short" strip-periods="true"/>
|
||||
</group>
|
||||
</if>
|
||||
<else>
|
||||
<text variable="edition"/>
|
||||
</else>
|
||||
</choose>
|
||||
</macro>
|
||||
<macro name="title">
|
||||
<choose>
|
||||
<if type="book">
|
||||
<group delimiter=", " suffix=". ">
|
||||
<text variable="title"/>
|
||||
<text macro="edition"/>
|
||||
</group>
|
||||
</if>
|
||||
<else>
|
||||
<text variable="title" suffix=". "/>
|
||||
</else>
|
||||
</choose>
|
||||
</macro>
|
||||
<macro name="publisher">
|
||||
<group delimiter=", ">
|
||||
<text variable="publisher"/>
|
||||
<text variable="publisher-place"/>
|
||||
</group>
|
||||
</macro>
|
||||
<macro name="year-date">
|
||||
<date variable="issued">
|
||||
<date-part name="year"/>
|
||||
</date>
|
||||
</macro>
|
||||
<citation collapse="citation-number">
|
||||
<sort>
|
||||
<key variable="citation-number"/>
|
||||
</sort>
|
||||
<layout prefix="[" suffix="]" delimiter=", ">
|
||||
<text variable="citation-number"/>
|
||||
</layout>
|
||||
</citation>
|
||||
<bibliography et-al-min="7" et-al-use-first="6" second-field-align="flush" line-spacing="2" entry-spacing="0">
|
||||
<layout>
|
||||
<text variable="citation-number" suffix=". "/>
|
||||
<group delimiter=". ">
|
||||
<text macro="author"/>
|
||||
<text macro="title"/>
|
||||
</group>
|
||||
<choose>
|
||||
<if type="chapter">
|
||||
<text macro="editor"/>
|
||||
<group delimiter=". " suffix=". ">
|
||||
<group prefix=" " delimiter=", ">
|
||||
<text variable="container-title" font-style="italic"/>
|
||||
<text macro="edition"/>
|
||||
</group>
|
||||
<text macro="year-date"/>
|
||||
<group delimiter=", ">
|
||||
<text macro="publisher"/>
|
||||
<group delimiter=" ">
|
||||
<label variable="page" form="short" strip-periods="true"/>
|
||||
<text variable="page"/>
|
||||
</group>
|
||||
</group>
|
||||
</group>
|
||||
</if>
|
||||
<else-if type="paper-conference">
|
||||
<text macro="editor"/>
|
||||
<group delimiter=". " suffix=". ">
|
||||
<group prefix=" " delimiter=", ">
|
||||
<text variable="container-title" form="short" font-style="italic"/>
|
||||
<text macro="edition"/>
|
||||
</group>
|
||||
<text macro="year-date"/>
|
||||
<group delimiter=", ">
|
||||
<text macro="publisher"/>
|
||||
<group delimiter=" ">
|
||||
<label variable="page" form="short" strip-periods="true"/>
|
||||
<text variable="page"/>
|
||||
</group>
|
||||
</group>
|
||||
</group>
|
||||
</else-if>
|
||||
<else-if type="article-journal">
|
||||
<group delimiter="; " suffix=". ">
|
||||
<group delimiter=" ">
|
||||
<text variable="container-title" suffix=" " form="short" strip-periods="true" font-style="italic"/>
|
||||
<text macro="year-date"/>
|
||||
</group>
|
||||
<group delimiter=": ">
|
||||
<text variable="volume" font-weight="bold"/>
|
||||
<text variable="page"/>
|
||||
</group>
|
||||
</group>
|
||||
</else-if>
|
||||
<else-if type="bill book graphic legal_case legislation motion_picture report song" match="any">
|
||||
<group delimiter=". " suffix=". ">
|
||||
<text variable="container-title" suffix=" " font-style="italic"/>
|
||||
<text macro="year-date"/>
|
||||
<text macro="publisher"/>
|
||||
</group>
|
||||
</else-if>
|
||||
<else-if type="webpage">
|
||||
<group suffix=". ">
|
||||
<text variable="container-title" suffix=". " font-style="italic"/>
|
||||
<text variable="URL" suffix=". "/>
|
||||
<date variable="accessed">
|
||||
<date-part prefix="Accessed " name="day" suffix=" "/>
|
||||
<date-part name="month" form="short" suffix=" " strip-periods="true"/>
|
||||
<date-part name="year"/>
|
||||
</date>
|
||||
</group>
|
||||
</else-if>
|
||||
<else-if type="thesis">
|
||||
<group delimiter=". " suffix=". ">
|
||||
<text variable="container-title" suffix=" " font-style="italic"/>
|
||||
<text macro="year-date"/>
|
||||
<group delimiter=", ">
|
||||
<text variable="genre"/>
|
||||
<text variable="publisher"/>
|
||||
</group>
|
||||
</group>
|
||||
</else-if>
|
||||
<else>
|
||||
<group>
|
||||
<group delimiter=". " suffix=". ">
|
||||
<text variable="container-title" form="short" suffix=" " strip-periods="true" font-style="italic"/>
|
||||
<text macro="year-date"/>
|
||||
<text macro="publisher"/>
|
||||
</group>
|
||||
<group prefix=", " delimiter=": ">
|
||||
<text variable="volume" font-weight="bold"/>
|
||||
<text variable="page"/>
|
||||
</group>
|
||||
</group>
|
||||
</else>
|
||||
</choose>
|
||||
</layout>
|
||||
</bibliography>
|
||||
</style>
|
||||
BIN
_extensions/inst/word/MS.docx
Normal file
BIN
_extensions/inst/word/MS.docx
Normal file
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BIN
_extensions/inst/word/RN.docx
Normal file
BIN
_extensions/inst/word/RN.docx
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BIN
_extensions/inst/word/cv.docx
Normal file
BIN
_extensions/inst/word/cv.docx
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BIN
_extensions/inst/word/manu.docx
Normal file
BIN
_extensions/inst/word/manu.docx
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BIN
_extensions/inst/word/repcn.docx
Normal file
BIN
_extensions/inst/word/repcn.docx
Normal file
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Reference in New Issue
Block a user